Citrus Sinensis ID: 028517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mdmdidqtikdkdlfkaaetgdsstfksLSKQQLLKSLslrndddrTLLHVAASCGHPEVVEILLSVDesanvvnavdeegwapihsaasiGNVTIVEMLLSkgadvnlkndggrtALHYAASKGWLKIVELLISRgakinskdkvgctalhrgastgNSALCELLIEEgaevdatdkagqtplmNAVICYNkefsgcsssnktwsgc
Flexible Loop (DISEMBL)
mdmdidqtikdkdlfkaaetgdsstfkslskQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKefsgcsssnktwsgc
Low Complexity Region (SEG)
MDMDIDQTIKDKDLFKAAETGDSSTFkslskqqllkslslRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC
Disordered region (IsUnstruct)
*********************************************RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFS************
Disordered Region (DISOPRED)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW*G*
Disordered Region (DISEMBL)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSG***********
Disordered Region (DISPRO)
*****DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
O75832	226	26S proteasome non-ATPase	yes	no	0.701	0.646	0.46	9e-26
Q9Z2X3	231	26S proteasome non-ATPase	yes	no	0.701	0.632	0.46	1e-25
Q9Z2X2	231	26S proteasome non-ATPase	yes	no	0.725	0.653	0.452	1e-25
Q54HW1	232	26S proteasome non-ATPase	yes	no	0.865	0.775	0.4	2e-25
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.807	0.142	0.364	5e-23
Q502K3	1071	Serine/threonine-protein	no	no	0.812	0.157	0.385	1e-22
Q54KA7	986	Ankyrin repeat, PH and SE	no	no	0.697	0.147	0.405	7e-22
Q0VGY8	1856	Protein TANC1 OS=Mus musc	no	no	0.649	0.072	0.427	2e-21
P50086	228	Probable 26S proteasome r	yes	no	0.754	0.688	0.390	2e-21
Q6F6B3	1849	Protein TANC1 OS=Rattus n	no	no	0.649	0.073	0.427	3e-21

>sp|O75832|PSD10_HUMAN 26S proteasome non-ATPase regulatory subunit 10 OS=Homo sapiens GN=PSMD10 PE=1 SV=1

 Score =  116 bits (291), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 87/150 (58%), Gaps = 4/150 (2%)

Query: 36  KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G  
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRD 86

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG 154
            IV+ LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR 
Sbjct: 87  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 146

Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           A+ GN  +  +L+   A  +  D  G TPL
Sbjct: 147 AAKGNLKMIHILLYYKASTNIQDTEGNTPL 176

Acts as an proto-oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.
Homo sapiens (taxid: 9606)

>sp|Q9Z2X3|PSD10_RAT 26S proteasome non-ATPase regulatory subunit 10 OS=Rattus norvegicus GN=Psmd10 PE=2 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 88/150 (58%), Gaps = 4/150 (2%)

Query: 36  KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G  
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNEKDDAGWSPLHIAASAGRD 86

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG 154
            IV+ LL KGA VN  N  G TALHYAASK   +I  +L+  GA  ++K+    TA+HR 
Sbjct: 87  EIVKALLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPDAKNHYDATAMHRA 146

Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           A+ GN  +  +L+   A  +  D  G TPL
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPL 176

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z2X2|PSD10_MOUSE 26S proteasome non-ATPase regulatory subunit 10 OS=Mus musculus GN=Psmd10 PE=1 SV=3

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 92/157 (58%), Gaps = 6/157 (3%)

Query: 31  KQQLL--KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           K+++L  KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H 
Sbjct: 23  KERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHI 79

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AAS G   IV+ LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD   
Sbjct: 80  AASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
            TA+HR A+ GN  +  +L+   A  +  D  G TPL
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL 176

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Mus musculus (taxid: 10090)

>sp|Q54HW1|PSD10_DICDI 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 106/185 (57%), Gaps = 5/185 (2%)

Query: 10  KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDE 69
           K+ DL +  + G     K L + Q +K+   +++D+RT LH AA+ G   V + L+  D 
Sbjct: 12  KEDDLLEFVKVGKLLEVKDLIENQGVKA-DCKDEDERTPLHWAAAKGQISVAQYLM--DN 68

Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
                N  D+ GW P+ SA S G+  +V++LL  GAD N  ND  RT LHYA+SKG   I
Sbjct: 69  CKCSPNTNDDGGWTPLTSATSAGHTHMVKLLLEFGADPNTVNDSKRTPLHYASSKGRSDI 128

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
           V+LL++ GAK N KD  G   +HR +S G+ A  E L++  A +++T+  G TPL  A  
Sbjct: 129 VDLLLTHGAK-NRKDDTGSAPIHRASSNGSVATVERLLKGEANINSTNNEGDTPLHIAAE 187

Query: 190 CYNKE 194
            YN E
Sbjct: 188 -YNHE 191

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC).

Dictyostelium discoideum (taxid: 44689)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  107 bits (268), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 17   AAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA 76
            AA++G+ +    L K +    +  + +   T+LH AA  G+  +V +L+    +   +N 
Sbjct: 938  AAKSGNLNLVNWLIKNK--ADIHAKTNSGETILHFAAESGNLNLVSLLI---HNGTDINT 992

Query: 77   VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
              ++G   +H A   GN+ +V +L+ KG DVN K + G T LH+A   G L +V LL+ R
Sbjct: 993  KTDDGLTALHYAVESGNLNLVSLLIHKGIDVNAKTNSGETILHFAVDLGSLDLVSLLMVR 1052

Query: 137  GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
            GA +N+K   G TALH    + N AL  LL+  GA+V+A + +G+TPL  AVI
Sbjct: 1053 GADVNAKTDDGLTALHYAVESDNLALVSLLMVYGADVNAKNNSGETPLHYAVI 1105

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 101/179 (56%), Gaps = 10/179 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLS--VDESA 71
           L  AA++G     K L  +    +LS  +  DR  +H AA  GH EVV++L+S   D+S 
Sbjct: 144 LHHAAQSGYQEMVKLLLNKG--ANLSASDKKDRQPIHWAAYLGHLEVVKLLVSQGSDKSC 201

Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
                 D+ G+ P+H+AA+ G+V +V+ LL  GA+++  N  G TALH A   G   +  
Sbjct: 202 K-----DKRGYTPLHAAAASGHVDVVKYLLRNGAEIDEPNAFGNTALHVACYTGQEAVAN 256

Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAEVDATDKAGQTPLMNAVI 189
            L++RGA +N  +  G T LH  A + N ALC ELL+  GA+V+   K G++PL  A I
Sbjct: 257 ELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNGADVNMQSKEGKSPLHMAAI 315

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score =  103 bits (258), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 3/148 (2%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH A++ G+P+ VE+L+  D     VNAVD +   P+H A+  G+ + V +LL KGA 
Sbjct: 171 TPLHHASAGGNPQCVELLIKADSK---VNAVDNDCITPLHQASFSGHSSCVSLLLKKGAK 227

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           V+ ++  G + LH AAS G++  VE L+  G  IN  D  G T LH     GN  L + L
Sbjct: 228 VDPRDIHGISPLHNAASAGYVDCVEQLVRNGENINCVDIEGVTPLHHTCFNGNLQLTKRL 287

Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKE 194
           IE GA+++  D+ G+TPL  A    +KE
Sbjct: 288 IELGAKINMVDEMGETPLHKAAFNGHKE 315

Dictyostelium discoideum (taxid: 44689)

>sp|Q0VGY8|TANC1_MOUSE Protein TANC1 OS=Mus musculus GN=Tanc1 PE=1 SV=2

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 82/138 (59%), Gaps = 3/138 (2%)

Query: 47   TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
            T L  AA  G  E+ E+LL   E    V+  +  G  P+  AA  G+  +V +LL +G D
Sbjct: 1078 TALTAAAGRGKVEICELLL---ERGAAVSRANRRGVPPLFCAARQGHWQVVRLLLDRGCD 1134

Query: 107  VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            VNL +  GRT L  A+ +G L  VE L+S+GA ++S DK G +AL      G+ A+ + L
Sbjct: 1135 VNLSDKQGRTPLMVASCEGHLSTVEFLLSKGAALSSLDKEGLSALSWACLKGHRAVVQYL 1194

Query: 167  IEEGAEVDATDKAGQTPL 184
            +EEGAE+D TDK G+TPL
Sbjct: 1195 VEEGAEIDQTDKNGRTPL 1212

May be a scaffold component in the postsynaptic density.

Mus musculus (taxid: 10090)

>sp|P50086|PSD10_YEAST Probable 26S proteasome regulatory subunit p28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAS6 PE=1 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 7/164 (4%)

Query: 32  QQLL---KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           Q+LL    SL L+ D D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H 
Sbjct: 19  QELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 78

Query: 88  AASIGNVTIVEMLLSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           A S+GN+ +V+ L  +    D+N   + G T LH A  K W ++ + LI  GA +  KDK
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

Query: 146 VGCTALHRGASTGNSALCELLIEEG-AEVDATDKAGQTPLMNAV 188
                LHR AS G+  L ELL   G + V+  DK G TPL +A+
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC) and appears to have an overlapping role with RPN14.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6F6B3|TANC1_RAT Protein TANC1 OS=Rattus norvegicus GN=Tanc1 PE=1 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 82/138 (59%), Gaps = 3/138 (2%)

Query: 47   TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
            T L  AA  G  E+ E+LL   E    V+  +  G  P+  AA  G+  +V++LL +G D
Sbjct: 1071 TALTAAAGRGKLEICELLL---ERGAAVSRANRRGVPPLFCAARQGHWQVVQLLLDRGCD 1127

Query: 107  VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            VN  +  GRT L  AA +G L  VE L+S+GA ++S DK G +AL      G+ A+ + L
Sbjct: 1128 VNPNDKQGRTPLMVAACEGHLSTVEFLLSKGAALSSLDKEGLSALSWACLKGHRAVVQYL 1187

Query: 167  IEEGAEVDATDKAGQTPL 184
            +EEGAE+D TDK G+TPL
Sbjct: 1188 VEEGAEIDQTDKNGRTPL 1205

May be a scaffold component in the postsynaptic density.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
224108912	244	predicted protein [Populus trichocarpa]	0.942	0.803	0.78	9e-81
359472517	243	PREDICTED: serine/threonine-protein phos	0.942	0.806	0.726	1e-79
449452082	243	PREDICTED: 26S proteasome non-ATPase reg	0.942	0.806	0.736	6e-79
255542108	243	ankyrin repeat-containing protein, putat	0.932	0.798	0.751	2e-77
363814565	228	uncharacterized protein LOC100795610 [Gl	0.942	0.859	0.73	3e-77
351726608	243	uncharacterized protein LOC100499930 [Gl	0.942	0.806	0.717	4e-77
388490486	245	unknown [Lotus japonicus]	0.942	0.8	0.700	7e-75
357487433	247	Ankyrin repeat domain-containing protein	0.942	0.793	0.716	3e-70
388520411	247	unknown [Medicago truncatula]	0.942	0.793	0.716	5e-70
4335756	247	putative ankyrin [Arabidopsis thaliana]	0.923	0.777	0.640	2e-66

>gi|224108912|ref|XP_002315012.1| predicted protein [Populus trichocarpa] gi|222864052|gb|EEF01183.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (780), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 156/200 (78%), Positives = 173/200 (86%), Gaps = 4/200 (2%)

Query: 1   MDMDIDQT--IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHP 58
           MDMDID    IKDKDLFKAAETGDSSTFKSL  ++L K+LSL+NDD R++LHVAAS GHP
Sbjct: 3   MDMDIDPPSQIKDKDLFKAAETGDSSTFKSLPPERLSKALSLQNDDGRSVLHVAASSGHP 62

Query: 59  EVVEILLSVDESAN-VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRT 116
           EVV+IL  +D+S++ VVN  DEEGWAP+HSAASIGNV IVE+LLSKG ADVNLKNDGGR 
Sbjct: 63  EVVKILSDIDQSSSAVVNGKDEEGWAPLHSAASIGNVEIVEILLSKGRADVNLKNDGGRA 122

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 176
           ALHYAASKGWLKI +LLIS GAKIN KDKVGCT LHR ASTGNS LCELLIEEGAEVDA 
Sbjct: 123 ALHYAASKGWLKIAQLLISHGAKINIKDKVGCTPLHRAASTGNSELCELLIEEGAEVDAV 182

Query: 177 DKAGQTPLMNAVICYNKEFS 196
           DKA QTPLM+A+IC NKE +
Sbjct: 183 DKADQTPLMSAIICNNKEVA 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472517|ref|XP_002271979.2| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Vitis vinifera]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/201 (72%), Positives = 171/201 (85%), Gaps = 5/201 (2%)

Query: 1   MDMDIDQT-----IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           MDM+ID T     IKD+DLF+AA++GDSS F++LS QQLL++LSLRN+DDR+LLHVA S 
Sbjct: 1   MDMEIDPTEPEAQIKDEDLFRAADSGDSSVFRALSPQQLLRALSLRNEDDRSLLHVATSL 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH EVV++L   D S + +N+VDEEGWAP+HSAAS G+  IVE+L+S+GADVNLKNDGGR
Sbjct: 61  GHLEVVKMLSEADPSVSGINSVDEEGWAPLHSAASSGHTEIVEILISRGADVNLKNDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
           TALHYAASKGWLKI E LI   AKIN+KDK+GCT LHR ASTGNSA+CELLIEEGAEVDA
Sbjct: 121 TALHYAASKGWLKIAEFLILHNAKINAKDKIGCTPLHRAASTGNSAMCELLIEEGAEVDA 180

Query: 176 TDKAGQTPLMNAVICYNKEFS 196
            DKAGQTPLMNAVIC NKE +
Sbjct: 181 IDKAGQTPLMNAVICQNKEVA 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452082|ref|XP_004143789.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cucumis sativus] gi|449513555|ref|XP_004164356.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cucumis sativus]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 148/201 (73%), Positives = 167/201 (83%), Gaps = 5/201 (2%)

Query: 1   MDMDIDQT-----IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           MDM+ID +     IKD DLFKAAETGDSS F +L+  QL +SLSLRN+DDR+LLHVA S 
Sbjct: 1   MDMEIDASKDVCLIKDNDLFKAAETGDSSVFTALTPHQLSQSLSLRNEDDRSLLHVAVSS 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH +VV+IL++ D+S  V+N  DEEGWAPIHSAASIG   I+++LLS GADVNLKNDGGR
Sbjct: 61  GHADVVKILVTADQSTKVINCADEEGWAPIHSAASIGRSDILDILLSGGADVNLKNDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
           TALHYA+SKGWLKI E LIS GAKIN KDKVGCT LHR ASTGNS LCE LIEEGAEVDA
Sbjct: 121 TALHYASSKGWLKIAETLISHGAKINLKDKVGCTPLHRAASTGNSELCEFLIEEGAEVDA 180

Query: 176 TDKAGQTPLMNAVICYNKEFS 196
           TDKAGQTPLMNAV+C NKE +
Sbjct: 181 TDKAGQTPLMNAVVCENKEVA 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542108|ref|XP_002512118.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223549298|gb|EEF50787.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/201 (75%), Positives = 167/201 (83%), Gaps = 7/201 (3%)

Query: 3   MDIDQT------IKDKDLFKAAETGDSSTFKSLSKQQLLKSL-SLRNDDDRTLLHVAASC 55
           M+ID T      I DKDLFKAAE+GDSSTFKSLS +QL  +L SL+NDD R+LLHVAASC
Sbjct: 1   MEIDSTDQTGRQITDKDLFKAAESGDSSTFKSLSPEQLSTALLSLQNDDARSLLHVAASC 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH EVV+ILL VDE  +VVN+ DEEGW P+HSAASIGN+ IVE+LLSKGADVN K DGGR
Sbjct: 61  GHLEVVKILLDVDEPKSVVNSKDEEGWTPLHSAASIGNLEIVEILLSKGADVNAKTDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
            ALHYAASKGWLKI E+LI  GAKIN KDKVGCT+LHR ASTGN  LCELLIEEGAEVD+
Sbjct: 121 AALHYAASKGWLKIAEVLILHGAKINLKDKVGCTSLHRAASTGNYQLCELLIEEGAEVDS 180

Query: 176 TDKAGQTPLMNAVICYNKEFS 196
            DKAGQTPLM AVIC NKE +
Sbjct: 181 IDKAGQTPLMTAVICDNKEVA 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814565|ref|NP_001242758.1| uncharacterized protein LOC100795610 [Glycine max] gi|255634879|gb|ACU17798.1| unknown [Glycine max]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/200 (73%), Positives = 169/200 (84%), Gaps = 4/200 (2%)

Query: 1   MDMDIDQ----TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           M++DI++     +K+KDLFKAAE G++STF++LS + L K+LSLRN+D R+LLHVAAS G
Sbjct: 3   MEVDIEKKQQDVVKEKDLFKAAEEGEASTFEALSSEILSKALSLRNEDARSLLHVAASSG 62

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
           H +VV+I LS D SA VVN  DEEGWAP+HSAASIG+V IVE LLSKGADVNLKN+GGR 
Sbjct: 63  HSQVVKIALSCDASAGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGGRA 122

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 176
           ALHYAASKGW+KI E+LIS  AKIN KDKVGCT LHR ASTG S LCELLIEEGAEVDA 
Sbjct: 123 ALHYAASKGWVKIAEMLISHDAKINIKDKVGCTPLHRAASTGKSELCELLIEEGAEVDAV 182

Query: 177 DKAGQTPLMNAVICYNKEFS 196
           D+AGQTPLMNAVICYNKE +
Sbjct: 183 DRAGQTPLMNAVICYNKEVA 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726608|ref|NP_001238156.1| uncharacterized protein LOC100499930 [Glycine max] gi|255627777|gb|ACU14233.1| unknown [Glycine max]

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 145/202 (71%), Positives = 166/202 (82%), Gaps = 6/202 (2%)

Query: 1   MDMDID------QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAAS 54
           M+M++D        +K+KDLFKAAE GD STF++ S + L K+LSLRN+D R+LLHVAAS
Sbjct: 1   MEMEVDTEKKQQDVVKEKDLFKAAEEGDMSTFEAHSSETLSKALSLRNEDARSLLHVAAS 60

Query: 55  CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG 114
            GH +VV++LLS D S  VVN  DEEGWAP+HSAASIG+V IVE LLSKGADVNLKN+GG
Sbjct: 61  SGHSQVVKMLLSCDASVGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGG 120

Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
           RTALHYAASKGW+KI E+LIS  AKIN KDKVGCT LHR ASTG S LCE LIEEGAEVD
Sbjct: 121 RTALHYAASKGWVKIAEMLISHDAKINIKDKVGCTPLHRAASTGKSELCEFLIEEGAEVD 180

Query: 175 ATDKAGQTPLMNAVICYNKEFS 196
           A D+AGQTPLMNAVICYNKE +
Sbjct: 181 AVDRAGQTPLMNAVICYNKEVA 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490486|gb|AFK33309.1| unknown [Lotus japonicus]

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 143/204 (70%), Positives = 168/204 (82%), Gaps = 8/204 (3%)

Query: 1   MDMDIDQ--------TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVA 52
           M+M++D          +K+KDLFKAAE GD+STF++ S + L +SLSLRN+D R+LLHVA
Sbjct: 1   MEMEVDSEKNQQDTVMVKEKDLFKAAEEGDTSTFQASSPETLSESLSLRNEDARSLLHVA 60

Query: 53  ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           AS GH +VV+ILLS D SA+VVN+ D+EGWAP+HSAASIGN+ IVE LLSKGADVNLKN 
Sbjct: 61  ASSGHSQVVKILLSADASASVVNSADDEGWAPLHSAASIGNLEIVEALLSKGADVNLKNG 120

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
           GGRTALHYAASKG +KI E+LIS  AK+N KDKVGCT LHR ASTGNS LCELLIEEGAE
Sbjct: 121 GGRTALHYAASKGRVKIAEILISHDAKVNIKDKVGCTPLHRAASTGNSELCELLIEEGAE 180

Query: 173 VDATDKAGQTPLMNAVICYNKEFS 196
           VDA D+AGQTPLM+AVI  NKE +
Sbjct: 181 VDAVDRAGQTPLMSAVIDRNKEIA 204

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487433|ref|XP_003614004.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355515339|gb|AES96962.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/201 (71%), Positives = 169/201 (84%), Gaps = 5/201 (2%)

Query: 1   MDMDID-----QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           M+M +D     +TIK+KDLFKAAE GDSSTF+SLS + L K+LSLRN+DDR+LLHVAAS 
Sbjct: 5   MNMVVDTEKKQETIKEKDLFKAAEEGDSSTFESLSSESLSKALSLRNEDDRSLLHVAASF 64

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH +VV+ILLS D SA V+N+ DEEGWAP+HSAASIGN  I+E LL+KGADVN+KN+GGR
Sbjct: 65  GHSKVVKILLSCDASAEVINSGDEEGWAPLHSAASIGNSEILEALLNKGADVNIKNNGGR 124

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
            ALHYAASKG +KI E+LIS  A IN KDKVG T LHR ASTG+S LCELLIEEGA+VDA
Sbjct: 125 AALHYAASKGRMKIAEILISHNANINIKDKVGSTPLHRAASTGHSELCELLIEEGADVDA 184

Query: 176 TDKAGQTPLMNAVICYNKEFS 196
            D+AGQTPLM+AVICYNKE +
Sbjct: 185 VDRAGQTPLMSAVICYNKEVA 205

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520411|gb|AFK48267.1| unknown [Medicago truncatula]

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 144/201 (71%), Positives = 169/201 (84%), Gaps = 5/201 (2%)

Query: 1   MDMDID-----QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           M+M +D     +TIK+KDLFKAAE GDSSTF+SLS + L K+LSLRN+DDR+LLHVAAS 
Sbjct: 5   MNMVVDTEKKQETIKEKDLFKAAEEGDSSTFESLSSESLSKALSLRNEDDRSLLHVAASF 64

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH +VV+ILLS D SA V+N+ DEEGWAP+HSAASIGN  I+E LL+KGADVN+KN+GGR
Sbjct: 65  GHSKVVKILLSCDASAEVINSGDEEGWAPLHSAASIGNSEILEALLNKGADVNIKNNGGR 124

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
            ALHYAASKG +KI E+LIS  A IN KDKVG T LHR ASTG+S LCELLIEEGA+VDA
Sbjct: 125 AALHYAASKGRMKIAEILISHNANINIKDKVGSTPLHRTASTGHSELCELLIEEGADVDA 184

Query: 176 TDKAGQTPLMNAVICYNKEFS 196
            D+AGQTPLM+AVICYNKE +
Sbjct: 185 VDRAGQTPLMSAVICYNKEVA 205

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4335756|gb|AAD17433.1| putative ankyrin [Arabidopsis thaliana]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 157/192 (81%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D  + ++D++LFKAAE GDSS F SLS++QL KSL+ RN+D R+LLHVAAS GH ++V++
Sbjct: 6   DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
           L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct: 66  LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query: 124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
           KG L+I +LL++ GAKIN  DKVGCT LHR AS G   +CE LIEEGAE+DATDK GQT 
Sbjct: 126 KGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCEFLIEEGAEIDATDKMGQTA 185

Query: 184 LMNAVICYNKEF 195
           LM++VIC +K+ 
Sbjct: 186 LMHSVICDDKQL 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2063804	240	AT2G03430 "AT2G03430" [Arabido	0.918	0.795	0.602	2.5e-58
UNIPROTKB|E2RA22	226	PSMD10 "Uncharacterized protei	0.677	0.623	0.455	1.4e-25
UNIPROTKB|O75832	226	PSMD10 "26S proteasome non-ATP	0.677	0.623	0.455	1.4e-25
RGD|620350	231	Psmd10 "proteasome (prosome, m	0.677	0.610	0.455	1.8e-25
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.673	0.619	0.426	2.2e-25
MGI|MGI:1858898	231	Psmd10 "proteasome (prosome, m	0.677	0.610	0.455	2.9e-25
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.721	0.646	0.428	4.6e-25
UNIPROTKB|F1P1R3	189	PSMD10 "Uncharacterized protei	0.663	0.730	0.418	1.4e-23
ASPGD|ASPL0000061746	237	AN1209 [Emericella nidulans (t	0.701	0.616	0.401	7e-22
UNIPROTKB|Q2KI59	151	PSMD10 "Proteasome (Prosome, m	0.543	0.748	0.487	2.4e-21

TAIR|locus:2063804 AT2G03430 "AT2G03430" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 115/191 (60%), Positives = 146/191 (76%)

Query:     4 DIDQTIKDKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDRTLLHVAASCGHPEVVEI 63
             D  + ++D++LFKAAE GDSS F              RN+D R+LLHVAAS GH ++V++
Sbjct:     6 DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query:    64 LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
             L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct:    66 LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query:   124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
             KG L+I +LL++ GAKIN  DKVGCT LHR AS G   +CE LIEEGAE+DATDK GQT 
Sbjct:   126 KGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCEFLIEEGAEIDATDKMGQTA 185

Query:   184 LMNAVICYNKE 194
             LM++VIC +K+
Sbjct:   186 LMHSVICDDKQ 196

GO:0008150 "biological_process" evidence=ND

GO:0005618 "cell wall" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007140 "male meiosis" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

UNIPROTKB|E2RA22 PSMD10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 66/145 (45%), Positives = 83/145 (57%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 151

Query:   160 SALCELLIEEGAEVDATDKAGQTPL 184
               +  +L+   A  +  D  G TPL
Sbjct:   152 LKMIHILLYYKASTNIQDTEGNTPL 176

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|O75832 PSMD10 "26S proteasome non-ATPase regulatory subunit 10" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 66/145 (45%), Positives = 83/145 (57%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 151

Query:   160 SALCELLIEEGAEVDATDKAGQTPL 184
               +  +L+   A  +  D  G TPL
Sbjct:   152 LKMIHILLYYKASTNIQDTEGNTPL 176

GO:0005515 "protein binding" evidence=IPI

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0043409 "negative regulation of MAPK cascade" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA;IMP

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000502 "proteasome complex" evidence=TAS

GO:0005838 "proteasome regulatory particle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

RGD|620350 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Rattus norvegicus (taxid:10116)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 66/145 (45%), Positives = 84/145 (57%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNEKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
             LL KGA VN  N  G TALHYAASK   +I  +L+  GA  ++K+    TA+HR A+ GN
Sbjct:    92 LLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPDAKNHYDATAMHRAAAKGN 151

Query:   160 SALCELLIEEGAEVDATDKAGQTPL 184
               +  +L+   A  +  D  G TPL
Sbjct:   152 LKMVHILLFYKASTNIQDTEGNTPL 176

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO;ISS

GO:0008134 "transcription factor binding" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO;ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO;ISS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO;ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;ISS

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO;ISS

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO;ISS

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO;ISS

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO;ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISO

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 61/143 (42%), Positives = 82/143 (57%)

Query:    42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             + D RT LH A S GH  + + LL +      V+  D+  W P+H AAS G   IV  L+
Sbjct:    37 DQDSRTALHWACSAGHVNIAQFLLDLGVE---VDLKDDACWTPLHIAASAGREEIVRSLI 93

Query:   102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             SKGA +N  N  G T LHYAASK   +I ++L+  GA  N+ DK+  T LHR ++ GN  
Sbjct:    94 SKGAQLNSVNQNGCTPLHYAASKNLYEIAQILLENGADPNATDKLQSTPLHRASAKGNYR 153

Query:   162 LCELLIEEGAEVDATDKAGQTPL 184
             L +LL++E A  +  D  G TPL
Sbjct:   154 LIQLLLKESASTNIQDSEGNTPL 176

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

MGI|MGI:1858898 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Mus musculus (taxid:10090)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 66/145 (45%), Positives = 83/145 (57%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN
Sbjct:    92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151

Query:   160 SALCELLIEEGAEVDATDKAGQTPL 184
               +  +L+   A  +  D  G TPL
Sbjct:   152 LKMVHILLFYKASTNIQDTEGNTPL 176

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 66/154 (42%), Positives = 92/154 (59%)

Query:    41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
             +++D+RT LH AA+ G   V + L+  D      N  D+ GW P+ SA S G+  +V++L
Sbjct:    42 KDEDERTPLHWAAAKGQISVAQYLM--DNCKCSPNTNDDGGWTPLTSATSAGHTHMVKLL 99

Query:   101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
             L  GAD N  ND  RT LHYA+SKG   IV+LL++ GAK N KD  G   +HR +S G+ 
Sbjct:   100 LEFGADPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAK-NRKDDTGSAPIHRASSNGSV 158

Query:   161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
             A  E L++  A +++T+  G TPL  A   YN E
Sbjct:   159 ATVERLLKGEANINSTNNEGDTPLHIAAE-YNHE 191

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1P1R3 PSMD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/141 (41%), Positives = 78/141 (55%)

Query:    44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
             D RT LH A S GH  V ++LL +      V   D+ GW P+H AAS G   IV+ L+ K
Sbjct:     2 DSRTALHWACSAGHAAVADLLLGLGVP---VGDKDDAGWTPLHIAASAGRDEIVKALIDK 58

Query:   104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
             GA +N  N  G T LHYAASK   +I  +L+  GA  ++ D    T LHR A+ GN  + 
Sbjct:    59 GAPINAVNQNGCTPLHYAASKNKQEIAIMLLENGADPDATDHFESTPLHRAAAKGNLKMI 118

Query:   164 ELLIEEGAEVDATDKAGQTPL 184
             ++L+   A V+  D  G TPL
Sbjct:   119 QILLRHNASVNIQDSEGNTPL 139

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

ASPGD|ASPL0000061746 AN1209 [Emericella nidulans (taxid:162425)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 61/152 (40%), Positives = 89/152 (58%)

Query:    41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT---IV 97
             ++DDDR  +H A +  H  +VE+L+S  +    V   D   W P+  AAS+ N     I+
Sbjct:    36 KDDDDRLPIHWAVAYNHLPIVELLVSTKDFDPDVE--DGSCWTPLMIAASLRNAEGDPII 93

Query:    98 EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
             E+LL KGADVN K+  G+ ALH+A SK  +  V  L+        KDK G  ALHR A+ 
Sbjct:    94 ELLLRKGADVNAKSITGQNALHFATSKANITTVRTLLENKCSARVKDKRGQLALHRAAAI 153

Query:   158 GNSALCELLIEEG-AEVDATDKAGQTPLMNAV 188
             G++ + +LL++EG + V+ATD  G T L +A+
Sbjct:   154 GSTPIIQLLLKEGRSPVNATDNDGLTALHHAI 185

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q2KI59 PSMD10 "Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 10" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 57/117 (48%), Positives = 70/117 (59%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 148

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-41
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-40
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-29
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-27
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-26
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-22
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-21
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-20
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-19
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-17
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-17
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-16
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-16
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-16
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-14
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-13
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-13
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-13
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-12
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-12
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-12
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-10
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-10
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-09
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-09
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-08
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-08
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	4e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-06
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	7e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	8e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-05
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-05
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	2e-05
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	3e-05
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	8e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-04
smart00248	30	smart00248, ANK, ankyrin repeats	6e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	0.001
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	0.002
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.003
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  134 bits (340), Expect = 8e-41
 Identities = 61/127 (48%), Positives = 85/127 (66%), Gaps = 3/127 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R++D RT LH+AAS GH EVV++LL   E+   VNA D +G  P+H AA  G++ IV++L
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLL---ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L KGADVN ++  G T LH AA  G L +V+LL+  GA +N++DK G T LH  A  G+ 
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 161 ALCELLI 167
            + +LL+
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  132 bits (333), Expect = 8e-40
 Identities = 59/120 (49%), Positives = 83/120 (69%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           NA DE+G  P+H AAS G++ +V++LL  GADVN K++ GRT LH AA  G L+IV+LL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            +GA +N++DK G T LH  A  GN  + +LL++ GA+V+A DK G+TPL  A    + E
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  104 bits (262), Expect = 5e-29
 Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 9/130 (6%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
            +D+D    L  AA  G     K L +      ++ +++D RT LH+AA  GH E+V++L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124
           L   E    VNA D++G  P+H AA  GN+ +V++LL  GADVN ++  GRT LH AA  
Sbjct: 60  L---EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116

Query: 125 GWLKIVELLI 134
           G L++V+LL+
Sbjct: 117 GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 98.1 bits (245), Expect = 6e-27
 Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 2/93 (2%)

Query: 85  IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +H AA  GN+ +V++LL KGADVNL +    TALH AA  G L+IV+LL+  GA +N+KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 145 KVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
           K G TALH  A  GN  + +LL+E GA+++  D
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 96.9 bits (242), Expect = 2e-26
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  G+ E+V++LL      N+ +         +H AA  GN+ IV++LL  GADVN
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT-----ALHLAARNGNLEIVKLLLEHGADVN 55

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            K+  G TALH AA  G L+IV+LL+  GA IN KD
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 91.7 bits (228), Expect = 7e-22
 Identities = 59/179 (32%), Positives = 82/179 (45%), Gaps = 28/179 (15%)

Query: 42  NDDDRTLLHVAASCGH-----PEVVEILLSVDESANVVNAVDEEGWAPIHSAAS--IGNV 94
             ++ T LH  ++  +      E+V++LL     ANV NA D  G  P+  A S    + 
Sbjct: 65  TKNNSTPLHYLSNIKYNLTDVKEIVKLLLE--YGANV-NAPDNNGITPLLYAISKKSNSY 121

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGW--LKIVELLISRGAK------------- 139
           +IVE LL  GA+VN+KN  G   LH         LKI++LLI +G               
Sbjct: 122 SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSY 181

Query: 140 ---INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
              IN KD  G T LH      N    + L++ GA  +  +K G TPL  A++  NKE 
Sbjct: 182 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEI 240

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 90.5 bits (225), Expect = 2e-21
 Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 28/175 (16%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG-----NVTIVEML 100
              L++A    + +VV+ILL  D  A++ ++       P+H  ++I         IV++L
Sbjct: 36  VLPLYLAKEARNIDVVKILL--DNGADINSSTKNN-STPLHYLSNIKYNLTDVKEIVKLL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASK--GWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           L  GA+VN  ++ G T L YA SK      IVE L+  GA +N K+  G   LH    + 
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN 152

Query: 159 NSAL--CELLIEEGAEVDA----------------TDKAGQTPLMNAVICYNKEF 195
              L   +LLI++G +++A                 D  G TPL  AV   N EF
Sbjct: 153 KIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF 207

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 87.4 bits (217), Expect = 3e-20
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 11/163 (6%)

Query: 41  RNDDDRTLLHVAAS--CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI-- 96
           ++   RT LHV  S    +P+V+ +LL   + A+V NA+D  G  P+       N  +  
Sbjct: 113 KDKVGRTPLHVYLSGFNINPKVIRLLL--RKGADV-NALDLYGMTPLAVLLKSRNANVEL 169

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAA--SKGWLKIVELLISRGAKINSKDKVGCTALHRG 154
           + +L+  GADV   +D  R+ LH+     K   +IV  LI  G    + D +G T LH  
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSM 229

Query: 155 A--STGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
           A  S+   +L   L+  G  ++A ++ GQTPL  A +  N   
Sbjct: 230 ATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRA 272

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 84.3 bits (209), Expect = 4e-19
 Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 13/149 (8%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV-TIVEMLLSK 103
            +T LH+       +V +I+  + E+   VNA +  G+ P+H          ++++L+  
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA 106

Query: 104 GADVNLKNDGGRTALH-YAASKGWL--KIVELLISRGAKINSKDKVGCTALH-----RGA 155
           GADVN K+  GRT LH Y +    +  K++ LL+ +GA +N+ D  G T L      R A
Sbjct: 107 GADVNAKDKVGRTPLHVYLSGF-NINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNA 165

Query: 156 STGNSALCELLIEEGAEVDATDKAGQTPL 184
              N  L  LLI+ GA+V A D   ++ L
Sbjct: 166 ---NVELLRLLIDAGADVYAVDDRFRSLL 191

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 77.6 bits (190), Expect = 2e-17
 Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 13/208 (6%)

Query: 2   DMDIDQTIKDKDLFKAAETGDSSTFKSLS-KQQLLKSLSLRNDDDRTLLHVAASCGHPEV 60
               + + K  +L+       +++   L  K  + + L+ R+ D R  LH AAS G  ++
Sbjct: 29  LDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKI 88

Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAA-----SIGNVTIVEMLLSKGA---DVNLKND 112
           V++LL     A+V NA D +G  P+H AA       GN+ + ++LL  GA     NL+++
Sbjct: 89  VKLLL--ASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
            G T LH+AA  G   IVELL+  GA  NS++  G TAL   A  G   L +LL+++G  
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Query: 173 VD-ATDKAGQTPLMNAVICYNKEFSGCS 199
           +             N         +   
Sbjct: 206 LSLLKFNLEGVANANVSKRNILNLTSLI 233

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 96  IVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG 154
           I ++LLS GAD+N+K+   G TALHYA      ++ ELL+S GA +N  DK   + LH  
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208

Query: 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
               N  +  +L+E GA  DA DK G TPL  +V
Sbjct: 209 VKHYNKPIVHILLENGASTDARDKCGNTPLHISV 242

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.1 bits (180), Expect = 3e-17
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
           LH AA  G L++V+LL+ +GA +N  D    TALH  A  GN  + +LL+E GA+V+A D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 178 KAGQTPLMNAVICYNKE 194
           K G T L  A    N E
Sbjct: 59  KDGNTALHLAARNGNLE 75

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 77.0 bits (189), Expect = 1e-16
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 2/150 (1%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D  + LH A   G  + VE LL + + A+ V    ++G  P+H A  +  + I+++L+++
Sbjct: 67  DIESELHDAVEEGDVKAVEELLDLGKFADDV--FYKDGMTPLHLATILKKLDIMKLLIAR 124

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           GAD ++ N    + LH A   G +K +ELLI   A ++ +D  GCT L    + G+ A+C
Sbjct: 125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAIC 184

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
           ++L++ GA +D   K G    +   I  NK
Sbjct: 185 KMLLDSGANIDYFGKNGCVAALCYAIENNK 214

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 75.8 bits (186), Expect = 4e-16
 Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           L + N  D ++L +   C   ++++ +L   +    VN  D E    +H A   G++  +
Sbjct: 86  LLIDNGVDTSILPI--PCIEKDMIKTIL---DCGIDVNIKDAELKTFLHYAIKKGDLESI 140

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +ML   GADVN+++D G   +H A    +  I++LL+ +GA  N KD  G + LH  A  
Sbjct: 141 KMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEY 200

Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
           G+ A  +LLI+ G  +    K G TPL NA+I +N+
Sbjct: 201 GDYACIKLLIDHGNHIMNKCKNGFTPLHNAII-HNR 235

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 74.9 bits (184), Expect = 7e-16
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 7/151 (4%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
               T LH A       + E+LLS   + N+ +  +    +P+H A    N  IV +LL 
Sbjct: 166 HKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN---SPLHHAVKHYNKPIVHILLE 222

Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKV-GCTALHRGASTGNS 160
            GA  + ++  G T LH +        I++LL+  G  +N+K  + G TALH  +S  + 
Sbjct: 223 NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH--SSIKSE 280

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICY 191
              +LL+E GA++++ +    TPL +AV  Y
Sbjct: 281 RKLKLLLEYGADINSLNSYKLTPLSSAVKQY 311

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 68.9 bits (169), Expect = 8e-14
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 94  VTIVEMLLSKGADVNLKNDGGRTALHYAASKGW---LKIVELLISRGAKINSKDKVGCTA 150
           V  V  LL+ GADVN + + G+T LH            IV LL+  GA +N+ ++ G T 
Sbjct: 27  VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTP 86

Query: 151 LHRGASTGNSA-LCELLIEEGAEVDATDKAGQTPL 184
           LH       +  + +LLI+ GA+V+A DK G+TPL
Sbjct: 87  LHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL 121

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 47  TLLHVAASCGHP--EVVEILLS----VDESANV---------VNAVDEEGWAPIHSAASI 91
            LLH+         +++++L+     ++    V         +N  D  G+ P+H A   
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202

Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            N   V+ LL  GA+ NL N  G T LH A      +I +LL++ G  I +  +
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
           E+ ++LLS     N+ +    +G   +H A    +  + E+LLS GA+VN+ +    + L
Sbjct: 148 EITKLLLSYGADINMKD--RHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205

Query: 119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST-GNSALCELLIEEGAEVDATD 177
           H+A       IV +L+  GA  +++DK G T LH       +  + +LL+E G +V+A  
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265

Query: 178 KA-GQTPLMNAV 188
              G T L +++
Sbjct: 266 YILGLTALHSSI 277

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 67.0 bits (163), Expect = 4e-13
 Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 7/151 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEML 100
           N +D +LL    +    E +E  L + ++   VN++D+    P+H A+   +++ +V  L
Sbjct: 238 NKNDLSLLKAIRN----EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKL 293

Query: 101 LSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKVGCTALHRGASTG- 158
           L +GADVN KN  G T L+  A  G+  + +  LI  GA +N+ D++  T LH+ ++   
Sbjct: 294 LERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDR 353

Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
           N  +   L+E GA V+A D   +TP+  A +
Sbjct: 354 NKDIVITLLELGANVNARDYCDKTPIHYAAV 384

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167
           GRTALH AA  G L++V+ L+ +G  IN  D+ G TALH  A  GN  + +LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 58.8 bits (143), Expect = 3e-12
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           G   +H AA  G + +V+ LL KG D+N  ++ G TALH AA  G L++++LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 64.3 bits (156), Expect = 4e-12
 Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 6/145 (4%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH A++    +  +I++++ E    VNA D     PIH AA   NV I+  LL  GAD
Sbjct: 343 TPLHQASTLDRNK--DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400

Query: 107 VNLKNDGGRTALHYA--ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG-NSALC 163
           +   +    TALH+A   +  ++  V+ LI RGA +NSK+K   T LH          + 
Sbjct: 401 IEALSQKIGTALHFALCGTNPYMS-VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVI 459

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAV 188
           E+L++ GA+V+A +   Q PL+ A+
Sbjct: 460 EMLLDNGADVNAINIQNQYPLLIAL 484

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 58.0 bits (140), Expect = 5e-10
 Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 35/178 (19%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN-VTIVEMLLSKGA-- 105
           LH A    + +VV+ LL+   +   VN  D     P+H      N + + EM+ S     
Sbjct: 41  LHQAVEARNLDVVKSLLTRGHN---VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS 97

Query: 106 ---------------DVNL-------KNDGGRTA-LHYAASKGW-----LKIVELLISRG 137
                          +V +       +    +T  L Y   K        +I +LL+S G
Sbjct: 98  VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG 157

Query: 138 AKINSKDK-VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           A IN KD+  G TALH      +  L ELL+  GA V+  DK   +PL +AV  YNK 
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKP 215

Length = 477

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 58.0 bits (140), Expect = 5e-10
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
           D      +L   A TG+++  + L K +      + +   RT LH+AAS G+ + V +LL
Sbjct: 521 DDPNMASNLLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLL 578

Query: 66  SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML--LSKGADVNLKNDGGRTALHYAAS 123
              + A  V+  D  G   + +A S  +  I  +L   +  +D +   D     L  AA 
Sbjct: 579 ---KHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGD----LLCTAAK 631

Query: 124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
           +  L  ++ L+ +G  ++S+D  G TAL    +  +  +  LLI  GA+VD  +
Sbjct: 632 RNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 57.8 bits (139), Expect = 6e-10
 Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 45/202 (22%)

Query: 14  LFKAAETGDSSTFKSLSKQ-QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN 72
           + K A +G+   +  +++  + +K +  R   D  L           + E+LL   E   
Sbjct: 124 ILKEAISGNDIHYDKINESIEYMKLIKERIQQDELL-----------IAEMLL---EGGA 169

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE- 131
            VNA D     PIH AA  GN  +V +LLS GADVN+      + L  A     +  ++ 
Sbjct: 170 DVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA 229

Query: 132 ----------------------------LLISRGAKINSKDKVGCTALHRGASTGN-SAL 162
                                       LL   G  +NS D    T LH  +   + S L
Sbjct: 230 IIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRL 289

Query: 163 CELLIEEGAEVDATDKAGQTPL 184
              L+E GA+V+A +  G+TPL
Sbjct: 290 VPKLLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.7 bits (127), Expect = 7e-10
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 67  VDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           ++     +NA D  G  P+H AA  G + +V+ LL  G D+NL++  G TAL  A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 46/144 (31%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-----DESANVVNAVDE------EGW 82
           LL +LS R     TLLH A S  + + VE +L        +S  +  A D+       G 
Sbjct: 71  LLLNLSCRGAVGDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI 129

Query: 83  APIHSAASIGNVTIVEMLLSKGADVNLKNDG--------------GRTALHYAASKGWLK 128
             +H AA   N  IV++LL +GA V  +  G              G + L+ AA  G   
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPS 189

Query: 129 IVELLISRGAKINSKDKVGCTALH 152
           IV LL    A I + D +G T LH
Sbjct: 190 IVALLSEDPADILTADSLGNTLLH 213

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGA 155
           I EMLL  GADVN K+    T +HYAA +G  K+V LL+S GA +N       + L    
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 156 STGNSALCELLIEEGAEVDATDKA-----GQTPLMNAVICYNKEFS 196
            + N    + +I+  + ++  D +         L  +++ Y+  FS
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFS 265

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           RT LH AA  G  E+V+ LL   E    +N  DE+G   +H AA  GN+ ++++LL
Sbjct: 2   RTALHKAAISGRLELVKYLL---EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 31/133 (23%)

Query: 87  SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           + AS GN  ++E LL    D ++ +  GRT LH AASKG+   V +L+     ++ +D  
Sbjct: 531 TVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDAN 590

Query: 147 GCTA---------------LHRGAS-----TGNSALCEL-----------LIEEGAEVDA 175
           G TA               L+  AS          LC             L+++G  VD+
Sbjct: 591 GNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS 650

Query: 176 TDKAGQTPLMNAV 188
            D  G T L  A+
Sbjct: 651 EDHQGATALQVAM 663

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G T LH AA  G L++V+LL+  GA +N++DK
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVEL 132
           N  D++G  P+H A+ I N  IV MLL+ GAD N  +   +T L+Y +      ++ + L
Sbjct: 66  NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINL 125

Query: 133 LISRGAKI-NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY 191
           L+  GAKI NS D+ GC  L    +  +  + + ++  G E    DK G+  +   ++  
Sbjct: 126 LVQYGAKINNSVDEEGCGPL-LACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSD 184

Query: 192 NKEFSGCS 199
           N + S  S
Sbjct: 185 NPKASTIS 192

Length = 446

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 47/229 (20%)

Query: 1   MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDD--DRTLLHVAASCGHP 58
              +   + ++K    AAE GD ++       +  K L++   D   R+ L VAA     
Sbjct: 8   PAEESPLSDEEKAFLPAAERGDLASVYR--DLEEPKKLNINCPDRLGRSALFVAAIENEN 65

Query: 59  -EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS-------KGADVNLK 110
            E+ E+LL++             G   +H A S+  V  VE +L        K   + L 
Sbjct: 66  LELTELLLNLSCRG-------AVGDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELA 117

Query: 111 NDG-------GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG--------- 154
           ND        G TALH AA +   +IV+LL+ RGA + ++         +          
Sbjct: 118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR--ACGDFFVKSQGVDSFYHG 175

Query: 155 -------ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFS 196
                  A  G+ ++  LL E+ A++   D  G T L   V+    EF 
Sbjct: 176 ESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVM--ENEFK 222

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 51.1 bits (122), Expect = 8e-08
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           +G +PI  A    +   +++L+  GA  ++K     + LH A  +G +K VE L+  G  
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 140 INSK-DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
            +    K G T LH         + +LLI  GA+ D  +    +PL  AV+
Sbjct: 94  ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVM 144

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 13/182 (7%)

Query: 22  DSSTFKSLSKQQLLKSL-------SLRNDDD--RTLLHVAASCGHPEVVEILLSVDESAN 72
           D S  K++  + L  SL       S+ + DD   T LH A+    P +  ++  + E   
Sbjct: 241 DLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQA--PSLSRLVPKLLERGA 298

Query: 73  VVNAVDEEGWAPIHSAASIG-NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK-IV 130
            VNA + +G  P++  A  G +   +  L+  GADVN  +    T LH A++    K IV
Sbjct: 299 DVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIV 358

Query: 131 ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC 190
             L+  GA +N++D    T +H  A   N  +   L++ GA+++A  +   T L  A+  
Sbjct: 359 ITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCG 418

Query: 191 YN 192
            N
Sbjct: 419 TN 420

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
           L  +AAS G      ILL         N  D +G  P+H A + G+V +V +LL  GAD 
Sbjct: 86  LCQLAAS-GDAVGARILL---TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141

Query: 108 NLKNDGGRTALHYAASKGWLKIVELLIS 135
            L +  G+T L  A   G+ ++V+LL  
Sbjct: 142 TLLDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 100 LLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           LL  G  D+N  +  G T LH AA  G L++V+ L+  G  +N +D  G TAL 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 8e-07
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  + LH+A   G  + +E+L+  D  A  ++  D  G  P+  A + G++ I +MLL
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLI--DHKA-CLDIEDCCGCTPLIIAMAKGDIAICKMLL 188

Query: 102 SKGADVN-LKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
             GA+++    +G   AL YA     + IV L I RGA  N
Sbjct: 189 DSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.7 bits (104), Expect = 9e-07
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           +G  P+H AA  G++ +V++LL  GADVN ++ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 23/140 (16%)

Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           N +N   +E   P+  A   G+  IVE+ +  GAD+N  N      L  A   G   I++
Sbjct: 26  NCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIK 85

Query: 132 LLISRGA-----------------------KINSKDKVGCTALHRGASTGNSALCELLIE 168
           LLI  G                         +N KD    T LH     G+    ++L E
Sbjct: 86  LLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE 145

Query: 169 EGAEVDATDKAGQTPLMNAV 188
            GA+V+  D  G  P+  A+
Sbjct: 146 YGADVNIEDDNGCYPIHIAI 165

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 86  HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             AAS G+     +LL+ GAD N ++  GRT LH A + G +++V +L+  GA     DK
Sbjct: 88  QLAAS-GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146

Query: 146 VGCTALHRGASTGNSALCELL 166
            G T L      G   + +LL
Sbjct: 147 DGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
             +L++ GA  N +D  G T LH   + G+  +  +L+E GA+    DK G+TPL  A 
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE 156

Length = 664

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 45.4 bits (107), Expect = 7e-06
 Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 6/126 (4%)

Query: 66  SVDESANVVNAVDEEG-WAPIHSAASIGNVT--IVEMLLSKGADVNLKNDGGRTALHYAA 122
           ++D   N++ A++  G +  +H+   I  +    VE LL +G   N  +D G   LH A+
Sbjct: 21  NLDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIAS 80

Query: 123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL--CELLIEEGAEV-DATDKA 179
                +IV +L++ GA  N+ DK   T L+  + T +  +    LL++ GA++ ++ D+ 
Sbjct: 81  KINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEE 140

Query: 180 GQTPLM 185
           G  PL+
Sbjct: 141 GCGPLL 146

Length = 446

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGW---LKIVELLISRGAKINSKDKVGCTALH 152
           IV++L+  GAD+N KN  G T L+   S G+   L+I+  +I  GA     DK G T L 
Sbjct: 91  IVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQ 150

Query: 153 RGASTGNSA---LCELLIEEGAEVD 174
               + +     + +LL+E+G +++
Sbjct: 151 VYLQSNHHIDIEIIKLLLEKGVDIN 175

Length = 489

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 14 LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
          L KAA +G     K L   +    ++  ++D  T LH+AA  G+ EV+++LL
Sbjct: 5  LHKAAISGRLELVKYLL--EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKIN 141
           G T LH AA  G L++V+LL+  GA IN
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEV---VEILLSVDESANVVNAVDEEGWAPIHSAAS 90
           L + ++ +N +     H AA CG  ++       +  D  A  +NA D+ G   IH AA 
Sbjct: 10  LEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAE 69

Query: 91  IGN----VTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELL 133
                    I++ L+  GAD+N +    G TALH AA +    + E L
Sbjct: 70  KHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWL 117

Length = 169

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 4  DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK---SLSLRNDDDRTLLHVAASCGHPEV 60
          D++    D  L  AA  G+    K      LL+    ++ ++ D  T LH+AA  G+ E+
Sbjct: 22 DVNLGDTDTALHLAARNGNLEIVK-----LLLEHGADVNAKDKDGNTALHLAARNGNLEI 76

Query: 61 VEILLSVDESANVVN 75
          V++LL      N+ +
Sbjct: 77 VKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           TALH+ A +G   L + L+E+G +++ TD+ G T L  A 
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAA 42

Length = 54

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 94  VTIVEMLLSKGADVNLKNDGGRTAL-----HYAASKGWLKIVELLISRGAKINSKDKVGC 148
             IV++ ++ GA+VN  ++   T L     +    K  L IV++LI  GA IN K+  G 
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110

Query: 149 TALHRGASTG---NSALCELLIEEGAEVDATDKAGQTPL 184
           T L+   S G   N  +   +IE GA+    DK G T L
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTML 149

Length = 489

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 18/116 (15%)

Query: 69  ESANVVNAVDE-------EGWAPIHSAASIGNVTIVEMLL------SKGADVNLKNDGGR 115
           ES + +  ++E       EG    H AA  G   I+             A +N  +D G+
Sbjct: 2   ESPHFMTCLEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQ 61

Query: 116 TALHYAASK--GWL--KIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELL 166
             +H AA K    L  +I++ LI  GA IN+++ + G TALH  A   +  L E L
Sbjct: 62  MCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWL 117

Length = 169

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           P+H AA++ +  IV++LL  G D +  +D G TAL+YA   G ++ V+L + +  ++   
Sbjct: 64  PLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 123

Query: 144 DKVG 147
            K G
Sbjct: 124 GKTG 127

Length = 284

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 133 LISRG-AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
           L+  G   +N+ D  G T LH  A  G   L + L++ G +++  D  G T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 67  VDESANVVNAVDEEGWAPIHSAASIGNVT--IVEMLLSKGADVNLKNDG-GRTALHYAAS 123
           V +    VN  ++    PI S      V   I++ L+  GADVN K      +ALH+  S
Sbjct: 37  VKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS 96

Query: 124 KGW---LKIVELLISRGAKINSKDKVGCTALHR 153
                  +I+++LI  G+ I  +D+ G   LH 
Sbjct: 97  FNKNVEPEILKILIDSGSSITEEDEDGKNLLHM 129

Length = 209

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 17/114 (14%)

Query: 93  NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK--IVELLISRGAKINSKDKVGCTA 150
           ++++V   L  G  ++ K+  GRT LH    +  +   I++LL   G  +N  D +G T 
Sbjct: 296 DISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTV 355

Query: 151 LHR-----------GASTGNSALCEL---LIEEGAEVDATDKAGQTPLMNAVIC 190
           LH               T N    ++   LI  GA++ A +  G TPL  + IC
Sbjct: 356 LHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPL-TSYIC 408

Length = 764

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVN 75
          D  T LH+AA  GH EVV++LL      N  +
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 114 GRTALHYAA----SKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNSALCELLIE 168
           GR   H  A    +   +KI ELL++ GA IN+++   G T LH  AST N  L E L  
Sbjct: 57  GRQCTHMVAWYDRANAVMKI-ELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCR 115

Query: 169 E-GAEVDATDKAGQTP 183
           + G  + A +   +T 
Sbjct: 116 QLGVNLGAINYQHETA 131

Length = 166

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDK 178
           G T LH  A  G+  + +LL+E GA+V+A DK
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKIN 141
           GRT LH AA  G L++V+LL+ +GA IN
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 15/107 (14%)

Query: 93  NVTIVEMLLSKGADVNLKN-------------DGGRTALH-YAASKGW-LKIVELLISRG 137
           N+   E  LS  A  N KN              G    LH Y   KG   + VE L+ RG
Sbjct: 3   NIMSAEYYLSLYAKYNSKNLDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRG 62

Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
              N  D  G   LH  +   N+ +  +L+  GA+ +A DK  +TPL
Sbjct: 63  YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL 109

Length = 446

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86
           + +  T LH+AA  G  E+V+ LL      N+    D +G   + 
Sbjct: 12 TDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL---RDSDGLTALD 54

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+ D RT LH+A + GH +VV +LL   E       +D++G  P+  A   G   +V++L
Sbjct: 111 RDYDGRTPLHIACANGHVQVVRVLL---EFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Query: 101 LS 102
             
Sbjct: 168 SR 169

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.6 bits (83), Expect = 6e-04
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
           +G  P+H AA  GN+ +V++LL KGAD+N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 127 LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE---LLIEEGAEVDATDKAGQTP 183
           ++ V  L++ GA +N + + G T LH      +  + +   LL+E GA+V+A ++ G TP
Sbjct: 27  VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTP 86

Query: 184 LMNAVICYNKE 194
           L    +     
Sbjct: 87  LH-LYLYNATT 96

Length = 471

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.001
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           +G  P+H AA  GN+ +V++LL  GAD+N
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 111 NDGGRTALHYAASKGWL---KIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELL 166
           N  G+  +H  ++       + ++LL+  GA IN K++V G T LH    T N  L   L
Sbjct: 52  NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWL 111

Query: 167 IEE-GAEVDATDKAGQTPLMNAVICYN 192
             + G  ++  + A +TP   A   ++
Sbjct: 112 CNQPGVNMEILNYAFKTPYYVACERHD 138

Length = 154

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 5/144 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA--SIGN-VTIVE 98
            D+  T L +  +    E++E+   +    ++++  D  G    H  A     N V  +E
Sbjct: 18  EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIE 77

Query: 99  MLLSKGADVNLKNDG-GRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGAS 156
           +L++ GAD+N +  G G T LH AAS    ++ E L  + G  + + +    TA H    
Sbjct: 78  LLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYK 137

Query: 157 TGNSALCELLIEEGAEVDATDKAG 180
             +  + E+L   GA  D     G
Sbjct: 138 MRDRRMMEILRANGAVCDDPLSIG 161

Length = 166

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 47/200 (23%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN---VTIV 97
           +N D  T L+   S G+   +EILL + E+      +D++G+  +       +   + I+
Sbjct: 105 KNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEII 164

Query: 98  EMLLSKGADVNL-KNDGGRTALH----YAASKGWLKIVELLISRG--------------- 137
           ++LL KG D+N   N      LH    Y   +    I++L +  G               
Sbjct: 165 KLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFM 224

Query: 138 ------------------------AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
                                     IN  D++G   L+   S  N  + E L++ G ++
Sbjct: 225 EYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI 284

Query: 174 DATDKAGQTPLMNAVICYNK 193
           +   + G T L  A    +K
Sbjct: 285 NIITELGNTCLFTAFENESK 304

Length = 489

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           D  G + ++ A +  NV +V  LL+ GA  NL  +     LH AA+    KIV++L+  G
Sbjct: 27  DVHGHSALYYAIADNNVRLVCTLLNAGALKNLLEN--EFPLHQAATLEDTKIVKILLFSG 84

Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG-QTPLMNAVI 189
              +  D  G TAL+    +GN    +L +++   +    K G +T   +AV+
Sbjct: 85  MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 137

Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	99.98
PHA02795	437	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02917	661	ankyrin-like protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PHA02741	169	hypothetical protein; Provisional	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PHA02792	631	ankyrin-like protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.91
PHA02736	154	Viral ankyrin protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.78
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.74
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.74
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.71
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.71
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.66
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.63
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.61
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.59
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.53
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.49
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.45
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.07
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.05
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.05
PF13606	30	Ank_3: Ankyrin repeat	99.0
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.97
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.97
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.94
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.93
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.92
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.89
PF13606	30	Ank_3: Ankyrin repeat	98.81
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.8
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.77
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.76
KOG0522	560	consensus Ankyrin repeat protein [General function	98.72
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.7
KOG0522	560	consensus Ankyrin repeat protein [General function	98.62
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.43
KOG0511	516	consensus Ankyrin repeat protein [General function	98.39
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.35
KOG2384	223	consensus Major histocompatibility complex protein	98.31
KOG0511	516	consensus Ankyrin repeat protein [General function	98.27
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.17
KOG2384	223	consensus Major histocompatibility complex protein	98.13
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.1
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.09
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.4
KOG2505	591	consensus Ankyrin repeat protein [General function	97.34
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.32
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.31
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.13
KOG2505	591	consensus Ankyrin repeat protein [General function	96.95
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.71
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.62
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.69
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.41

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.6e-38  Score=229.51  Aligned_cols=195  Identities=17%  Similarity=0.141  Sum_probs=174.9

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (208)
                      .+..|..+++|||+|+..|+.++++.|++.+.  +.+..  .+.||||+|+..|+.+++++|+..+.+   ++..+..|.
T Consensus        23 a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga--~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gad---vn~~d~~G~   95 (284)
T PHA02791         23 AFKADVHGHSALYYAIADNNVRLVCTLLNAGA--LKNLL--ENEFPLHQAATLEDTKIVKILLFSGMD---DSQFDDKGN   95 (284)
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcC--CCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCC
Confidence            45678899999999999999999999998763  33333  478999999999999999999998876   567788999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCc-hHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhhCCH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGR-TALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNS  160 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~A~~~~~~  160 (208)
                      ||||.|+..|+.+++++|+++|++++.++..|+ ||+|+|+..|+.+++++|++++.+.  .+ ..|.||||.|+..|+.
T Consensus        96 TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~  173 (284)
T PHA02791         96 TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHV  173 (284)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCH
Confidence            999999999999999999999999998888875 8999999999999999999987543  23 3589999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhCCcccccccccccccc
Q 028517          161 ALCELLIEEGAEVDATDKAGQTP-LMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       161 ~~~~~Ll~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      +++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++++..
T Consensus       174 eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        174 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             HHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999999999999999999987 99999999999999999988754

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.3e-38  Score=206.08  Aligned_cols=186  Identities=42%  Similarity=0.592  Sum_probs=88.0

Q ss_pred             HHHHHcCChHHHHHHHHHhhhhhccCCCC-CCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCC
Q 028517           15 FKAAETGDSSTFKSLSKQQLLKSLSLRND-DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN   93 (208)
Q Consensus        15 ~~a~~~g~~~~~~~l~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~   93 (208)
                      +.+++.....-++.+++..+ .+++.+++ +|+||||.||..|+.+++.+|++. ... .++.+|..|+||||.|++.|+
T Consensus         8 ~~~~~~~~~~kveel~~s~~-kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv-~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    8 KAICENCEEFKVEELIQSDP-KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNV-KPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             HHHHhhchHHHHHHHHhcCh-hhhhccccccCCceeeeeeecCchhHHHHHHhc-CCC-CCCCccccCCchhhhhhhcCc
Confidence            33444444444444444332 22333332 455555555555555555555431 111 133334445555555555555


Q ss_pred             HHHHHHHHhC-CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCC
Q 028517           94 VTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE  172 (208)
Q Consensus        94 ~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~  172 (208)
                      .++++-|+.+ |++++..+..|.|+||+|+..|+.++.++|+++|+.++.+|..|.||||.|+..|.+.++++|+..|+.
T Consensus        85 ~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~  164 (226)
T KOG4412|consen   85 DEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP  164 (226)
T ss_pred             HHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC
Confidence            5555555544 455555455555555555555555555555555555545555555555555555555555555555555


Q ss_pred             CCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517          173 VDATDKAGQTPLMNAVICYNKEFSGCSSSNK  203 (208)
Q Consensus       173 ~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  203 (208)
                      ++..|.+|+||||.|.-.|++++...|++.+
T Consensus       165 ~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g  195 (226)
T KOG4412|consen  165 LNTQDKYGFTPLHHALAEGHPDVAVLLVRAG  195 (226)
T ss_pred             CCcccccCccHHHHHHhccCchHHHHHHHhc
Confidence            5555555555555554444444444444443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-38  Score=205.69  Aligned_cols=178  Identities=38%  Similarity=0.477  Sum_probs=166.1

Q ss_pred             ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhc-ccccccccccCCCCCcHHH
Q 028517            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~-~~~~~~~~~~~~~~~~~l~   86 (208)
                      .++++|||.|++.|..+++.+|+.+. .-.++.+|+.|+||||.||..|+.++++.|+.. +++   ++..+..|.|+||
T Consensus        36 qD~Rt~LHwa~S~g~~eiv~fLlsq~-nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad---vna~tn~G~T~LH  111 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIVYFLLSQP-NVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD---VNATTNGGQTCLH  111 (226)
T ss_pred             ccCCceeeeeeecCchhHHHHHHhcC-CCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC---cceecCCCcceeh
Confidence            38999999999999999999999744 567777899999999999999999999999986 444   7888899999999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      +|+..|..+++++|+++|+.++.+|..|.||+|-|+.-|.++++++|+..|+.+|.+|+.|+||||.|.-.|+.++...|
T Consensus       112 yAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lL  191 (226)
T KOG4412|consen  112 YAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLL  191 (226)
T ss_pred             hhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888999999999


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHh
Q 028517          167 IEEGAEVDATDKAGQTPLMNAVIC  190 (208)
Q Consensus       167 l~~~~~~~~~~~~g~t~l~~A~~~  190 (208)
                      .++|++.+..|++| ||+-.|+-.
T Consensus       192 V~~gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  192 VRAGADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             HHhccceeeccccC-chHHHHHHH
Confidence            99999999999988 998887653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-36  Score=237.92  Aligned_cols=201  Identities=26%  Similarity=0.341  Sum_probs=176.8

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +++..+..+.+|||.|++.|+.+++++|++.+  .++...+..+.||||.|+..|+.+++++|++.+...  ....+..|
T Consensus        27 ~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g  102 (413)
T PHA02875         27 NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG--AIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA--DDVFYKDG  102 (413)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc--cccccCCC
Confidence            45566677899999999999999999998876  355556677889999999999999999999877643  23445678


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~  161 (208)
                      .||||.|+..|+.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~e  182 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIA  182 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCC-CHHHHHHHhCCcccccccccccccc
Q 028517          162 LCELLIEEGAEVDATDKAGQ-TPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~g~-t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      ++++|+++|++++..+..|. ||+++|+..++.+++++|+++++..
T Consensus       183 iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            99999999999999988775 7888899999999999999988754

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=232.15  Aligned_cols=192  Identities=23%  Similarity=0.229  Sum_probs=177.0

Q ss_pred             CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (208)
Q Consensus        10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (208)
                      .+++|+.|++.|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.|..   .+..+..+.||||.|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g--~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~t~L~~A~   76 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIG--INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI---PDVKYPDIESELHDAV   76 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---ccccCCCcccHHHHHH
Confidence            478999999999999999999876  57777788999999999999999999999998876   4455667899999999


Q ss_pred             hcCCHHHHHHHHhCCCCCC-CCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH
Q 028517           90 SIGNVTIVEMLLSKGADVN-LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE  168 (208)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~  168 (208)
                      ..|+.+++++|++.|.... ..+..|.||+|+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++
T Consensus        77 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~  156 (413)
T PHA02875         77 EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID  156 (413)
T ss_pred             HCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999987654 446689999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          169 EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       169 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      +|++++.++..|.||||+|+..|+.+++++|+++++..
T Consensus       157 ~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~  194 (413)
T PHA02875        157 HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI  194 (413)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999987654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.9e-36  Score=237.84  Aligned_cols=200  Identities=28%  Similarity=0.413  Sum_probs=177.2

Q ss_pred             CcccccccCcHHHHHHH--HcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcC--CHHHHHHHHhccccccccccc
Q 028517            2 DMDIDQTIKDKDLFKAA--ETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAV   77 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~--~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~ll~~~~~~~~~~~~   77 (208)
                      +++..+..+.+||+.|+  ..|+.+++++|++.+  .++...+..|.||||+|+..|  +.+++++|++.|.+   ++..
T Consensus        98 ~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d---in~~  172 (480)
T PHA03100         98 NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG--ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD---INAK  172 (480)
T ss_pred             CCCCCCCCCCchhhHHHhcccChHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC---cccc
Confidence            45667778899999999  999999999998866  467777888999999999999  89999999988876   5666


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCC------chHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCCCCc
Q 028517           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG------RTALHYAASKGW--LKIVELLISRGAKINSKDKVGCT  149 (208)
Q Consensus        78 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~t  149 (208)
                      +..|.||||.|+..|+.+++++|+++|++++..+..+      .||+|.|+..++  .+++++|+++|++++.+|..|.|
T Consensus       173 d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~T  252 (480)
T PHA03100        173 NRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFT  252 (480)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCC
Confidence            7789999999999999999999999999988888877      889999999998  99999999999999999999999


Q ss_pred             HHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          150 ALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       150 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |||.|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|+++++..
T Consensus       253 pL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i  309 (480)
T PHA03100        253 PLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI  309 (480)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCH
Confidence            999999999999999999999999999999999999999999999999999888753

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.4e-35  Score=228.25  Aligned_cols=184  Identities=29%  Similarity=0.434  Sum_probs=149.7

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccc----------
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN----------   72 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~----------   72 (208)
                      ++..+..+.+||+.|++.|+.+++++|++.+  .+++..+..|.||||.|+..|+.+++++|++.|.+..          
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~G--a~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~  105 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHG--ADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKD  105 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHH
Confidence            4556667889999999999999999998766  4666677888899999999999999999988765432          


Q ss_pred             ----------cccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 028517           73 ----------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS  142 (208)
Q Consensus        73 ----------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~  142 (208)
                                .++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++.
T Consensus       106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~  185 (434)
T PHA02874        106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV  185 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC
Confidence                      1344567788999999999999999999999999988888999999999999999999999999998888


Q ss_pred             CCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 028517          143 KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV  188 (208)
Q Consensus       143 ~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  188 (208)
                      .+..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus       186 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~  231 (434)
T PHA02874        186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI  231 (434)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence            8888999999999999999999999888765554444444444333

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-34  Score=229.42  Aligned_cols=199  Identities=27%  Similarity=0.318  Sum_probs=162.8

Q ss_pred             CcccccccCcHHHHH-----HHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHH--hcCCHHHHHHHHhcccccccc
Q 028517            2 DMDIDQTIKDKDLFK-----AAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA--SCGHPEVVEILLSVDESANVV   74 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~-----a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~~~~ll~~~~~~~~~   74 (208)
                      +++..+..+.++++.     |+..|+.++++.|++.+  .+++..+..|.||||+|+  ..|+.+++++|++.|.+   +
T Consensus        60 ~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g--a~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~---~  134 (480)
T PHA03100         60 DINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG--ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN---V  134 (480)
T ss_pred             CCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCC--CCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC---C
Confidence            345556667777777     77888888887777655  355667777888888888  88888888888877765   4


Q ss_pred             cccCCCCCcHHHHHHhcC--CHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-----
Q 028517           75 NAVDEEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG-----  147 (208)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-----  147 (208)
                      +..+..|.||||.|+..+  +.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++|++++..+..+     
T Consensus       135 ~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~  214 (480)
T PHA03100        135 NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTI  214 (480)
T ss_pred             CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHH
Confidence            566778888888888888  8888888888888888888888888888888888888888888888888777777     


Q ss_pred             -CcHHHHHHhhCC--HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          148 -CTALHRGASTGN--SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       148 -~t~l~~A~~~~~--~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                       .||+|.|+..++  .+++++|+++|++++.++..|.||||+|+..|+.+++++|++.++.
T Consensus       215 ~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad  275 (480)
T PHA03100        215 FETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN  275 (480)
T ss_pred             HHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             788888888888  8888999988999999999999999999999999999999988764

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-34  Score=227.53  Aligned_cols=196  Identities=24%  Similarity=0.279  Sum_probs=147.7

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccc---------------
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA---------------   71 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~---------------   71 (208)
                      ...+.+|||.|++.|+.++|++|++.+  .+++..+..|.||||+||..|+.+++++|++.+...               
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~g--advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~  111 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRG--HNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNN  111 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHc
Confidence            345678899999999999999998765  577778888999999999887776666555421110               


Q ss_pred             ----------------------------------------------ccccccCCC-CCcHHHHHHhcCCHHHHHHHHhCC
Q 028517           72 ----------------------------------------------NVVNAVDEE-GWAPIHSAASIGNVTIVEMLLSKG  104 (208)
Q Consensus        72 ----------------------------------------------~~~~~~~~~-~~~~l~~a~~~~~~~~~~~Ll~~~  104 (208)
                                                                    ..++..+.. |.||||.|+..|+.+++++|+++|
T Consensus       112 ~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g  191 (477)
T PHA02878        112 RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYG  191 (477)
T ss_pred             CCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC
Confidence                                                          002333444 788888888888888888888888


Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh-CCHHHHHHHHHcCCCCCCCCC-CCCC
Q 028517          105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST-GNSALCELLIEEGAEVDATDK-AGQT  182 (208)
Q Consensus       105 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~-~g~t  182 (208)
                      ++++.++..|.||+|.|+..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|+++|++++..+. .|.|
T Consensus       192 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~T  271 (477)
T PHA02878        192 ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLT  271 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCC
Confidence            88888888888888888888888888888888888888888888888888764 577888888888888877765 6788


Q ss_pred             HHHHHHHhCCcccccccccccccc
Q 028517          183 PLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       183 ~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |||+|  .++.+++++|+++++..
T Consensus       272 pLh~A--~~~~~~v~~Ll~~gadi  293 (477)
T PHA02878        272 ALHSS--IKSERKLKLLLEYGADI  293 (477)
T ss_pred             HHHHH--ccCHHHHHHHHHCCCCC
Confidence            88888  46677778777776543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=1.5e-34  Score=222.58  Aligned_cols=191  Identities=34%  Similarity=0.416  Sum_probs=177.1

Q ss_pred             ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccC-CCCCcHHH
Q 028517            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIH   86 (208)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l~   86 (208)
                      ......++.|++.|+++.++.+++.. +.+.+..|..|.|+||.|+.+++++++++|++++++   ++... .-+.||||
T Consensus        42 d~~~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad---vn~~gG~l~stPLH  117 (600)
T KOG0509|consen   42 DSSLDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD---VNAIGGVLGSTPLH  117 (600)
T ss_pred             chhhhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC---ccccCCCCCCCcch
Confidence            34467899999999999999999985 678888899999999999999999999999999988   44444 56789999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      +|+++|++.++++|+++|++++.+|.+|.+|+|.|++.++...+-+++.++++++.+|.+|.|||++|+..|....++.|
T Consensus       118 WAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~L  197 (600)
T KOG0509|consen  118 WAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRL  197 (600)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             HHcCCCCCCCC-CCCCCHHHHHHHhCCccccccccccc
Q 028517          167 IEEGAEVDATD-KAGQTPLMNAVICYNKEFSGCSSSNK  203 (208)
Q Consensus       167 l~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~l~~~~  203 (208)
                      +..|+.+..+| ..|.||||+|+..|+.+.++ |+..+
T Consensus       198 L~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g  234 (600)
T KOG0509|consen  198 LKFGASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEG  234 (600)
T ss_pred             HHhcccccccccccCCchHHHHHhcCCcceEe-hhhhc
Confidence            99999999998 89999999999999999999 55443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.3e-34  Score=222.65  Aligned_cols=190  Identities=27%  Similarity=0.419  Sum_probs=174.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhc
Q 028517           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (208)
Q Consensus        12 ~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~   91 (208)
                      ..+..|+..|+++.++.|++.. +...+..+..|.||||.|+..|+.+++++|++.|.+   ++..+..|.|||+.|+..
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~-~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~---~n~~~~~~~t~L~~A~~~   78 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNK-GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD---INHINTKIPHPLLTAIKI   78 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHc
Confidence            4688999999999999999866 455667788899999999999999999999998877   566778899999999999


Q ss_pred             CCHHHHHHHHhCCC-----------------------CCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 028517           92 GNVTIVEMLLSKGA-----------------------DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGC  148 (208)
Q Consensus        92 ~~~~~~~~Ll~~~~-----------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  148 (208)
                      |+.+++++|+++|+                       +++.++..|.||+|+|+..|+.+++++|+++|++++..+..|.
T Consensus        79 ~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~  158 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGC  158 (434)
T ss_pred             CCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCC
Confidence            99999999998765                       4566788899999999999999999999999999999999999


Q ss_pred             cHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       149 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      ||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++++.
T Consensus       159 tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~  215 (434)
T PHA02874        159 YPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH  215 (434)
T ss_pred             CHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999999999999998754

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=9.3e-34  Score=221.56  Aligned_cols=197  Identities=18%  Similarity=0.236  Sum_probs=174.7

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcC--CHHHHHHHHhcccccccccccCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVDE   79 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~ll~~~~~~~~~~~~~~   79 (208)
                      +++..+..+.||||.|++.|+.++++.|++.+  .+++.+|..|.||||+|+..+  ..+++++|++.|++..  ...+.
T Consensus        64 dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin--~~~d~  139 (446)
T PHA02946         64 SPNETDDDGNYPLHIASKINNNRIVAMLLTHG--ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN--NSVDE  139 (446)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcc--cccCC
Confidence            56788899999999999999999999999876  577888999999999998765  4899999999887632  24577


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh
Q 028517           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW--LKIVELLISRGAKINSKDKVGCTALHRGAST  157 (208)
Q Consensus        80 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~  157 (208)
                      .|.|||+ |+..++.+++++|++.|++++.+|..|.||+|.|+..++  .+++++|+++|++++.+|..|.||||+|+..
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            8999997 666789999999999999999999999999999887554  6899999999999999999999999999987


Q ss_pred             C--CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCc-ccccccccccc
Q 028517          158 G--NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK-EFSGCSSSNKT  204 (208)
Q Consensus       158 ~--~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~-~~~~~l~~~~~  204 (208)
                      +  +.+++++|++ |++++.+|.+|.||||+|+..++. ++++.|++++.
T Consensus       219 ~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        219 TVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             CCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            6  7899999985 899999999999999999999885 88888888764

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.3e-34  Score=208.21  Aligned_cols=183  Identities=15%  Similarity=0.152  Sum_probs=162.1

Q ss_pred             ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC-CcHHH
Q 028517            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIH   86 (208)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~-~~~l~   86 (208)
                      ..+.+|||.|+..|+.++++.|++.+  .+.+.++..|.||||+|+..|+.+++++|++.+++   ++..+..| .||||
T Consensus        59 ~d~~TpLh~Aa~~g~~eiV~lLL~~G--advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad---in~~~~~g~~TpL~  133 (284)
T PHA02791         59 LENEFPLHQAATLEDTKIVKILLFSG--MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFY  133 (284)
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cCccCCCCCcHHHH
Confidence            34689999999999999999999865  57777899999999999999999999999998876   45556666 58999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH-HHHHHhhCCHHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA-LHRGASTGNSALCE  164 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~-l~~A~~~~~~~~~~  164 (208)
                      .|+..|+.+++++|++++...  .+ ..|.||||+|+..|+.++++.|+++|++++.++..|.|| ||+|+..|+.++++
T Consensus       134 ~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~  211 (284)
T PHA02791        134 HAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQ  211 (284)
T ss_pred             HHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            999999999999999987543  23 258999999999999999999999999999999999987 99999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          165 LLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       165 ~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      +|+++|++++.+|.+| +++      +..|++++|+++..
T Consensus       212 lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~  244 (284)
T PHA02791        212 ALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHV  244 (284)
T ss_pred             HHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhh
Confidence            9999999999999854 555      88899999998654

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=195.68  Aligned_cols=177  Identities=19%  Similarity=0.214  Sum_probs=157.4

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhc--CCHHHHHHHHhcccccccccccC-CCCCc
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC--GHPEVVEILLSVDESANVVNAVD-EEGWA   83 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~~~~ll~~~~~~~~~~~~~-~~~~~   83 (208)
                      .....+||+.|++.|+.+.|+.|++.     .+..+..|.||||+|+..  ++.+++++|++.|++   ++..+ ..|.|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad---vn~~~~~~g~T   89 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD---VNFKTRDNNLS   89 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC---CCccCCCCCCC
Confidence            45678999999999999999999864     345688999999999975  489999999999887   45554 57999


Q ss_pred             HHHHHHhc---CCHHHHHHHHhCCCCCCCCCCCCchHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHH-HHhh
Q 028517           84 PIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALHYAAS--KGWLKIVELLISRGAKINSKDKVGCTALHR-GAST  157 (208)
Q Consensus        84 ~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~-A~~~  157 (208)
                      |||.|+..   ++.+++++|+++|++++.++..|.||+|.|+.  .++.+++++|+++|++++.+|..|.||||. |+..
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhc
Confidence            99998753   57999999999999999999999999999876  468999999999999999999999999995 5678


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 028517          158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICY  191 (208)
Q Consensus       158 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  191 (208)
                      ++.+++++|+++|++++.+|..|.||+++|..++
T Consensus       170 ~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            8999999999999999999999999999998765

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.5e-33  Score=220.02  Aligned_cols=199  Identities=27%  Similarity=0.305  Sum_probs=150.0

Q ss_pred             CcccccccCcHHHHHHHHcC-ChHHHHHHHHHhhhhhccCCCCCCchHHHHHH--hcCCHHHHHHHHhcccccccccccC
Q 028517            2 DMDIDQTIKDKDLFKAAETG-DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA--SCGHPEVVEILLSVDESANVVNAVD   78 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g-~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~~~~ll~~~~~~~~~~~~~   78 (208)
                      |++..+..|.+|||.|+..| ..++++.|++.+  .+++..+..|.||||+|+  ..++.+++++|++.|.+   ++..+
T Consensus        75 din~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g--a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad---~~~~d  149 (471)
T PHA03095         75 DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAG--ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD---VNALD  149 (471)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC--CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC---CCccC
Confidence            56667778888888888888 488888887765  466777777888888888  45567778887776665   33344


Q ss_pred             CCCCcHHHHHHhc-------------------------------------CCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517           79 EEGWAPIHSAASI-------------------------------------GNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (208)
Q Consensus        79 ~~~~~~l~~a~~~-------------------------------------~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (208)
                      ..|.||||.|+..                                     ++.++++.|++.|++++.+|..|.||+|+|
T Consensus       150 ~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~A  229 (471)
T PHA03095        150 LYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSM  229 (471)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            4445555544433                                     345555566666666666666666777777


Q ss_pred             HHcCCH--HHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccc
Q 028517          122 ASKGWL--KIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCS  199 (208)
Q Consensus       122 ~~~~~~--~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  199 (208)
                      +..+..  .+++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.++.+|.||+++|+..|+.+++++|
T Consensus       230 a~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~L  309 (471)
T PHA03095        230 ATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAA  309 (471)
T ss_pred             HhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            666653  466777888889998998999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 028517          200 SSNKTW  205 (208)
Q Consensus       200 ~~~~~~  205 (208)
                      ++.++.
T Consensus       310 L~~~~~  315 (471)
T PHA03095        310 LAKNPS  315 (471)
T ss_pred             HHhCCC
Confidence            887654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=218.50  Aligned_cols=196  Identities=26%  Similarity=0.356  Sum_probs=171.2

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhh-----------------------------------------------
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQL-----------------------------------------------   34 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~-----------------------------------------------   34 (208)
                      |++..+..|.+|||.|++.|+.+.+++|+....                                               
T Consensus        62 dvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~  141 (477)
T PHA02878         62 NVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSK  141 (477)
T ss_pred             CCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccc
Confidence            567788899999999999988887777765310                                               


Q ss_pred             ---------------hhhccCCCCC-CchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHH
Q 028517           35 ---------------LKSLSLRNDD-DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE   98 (208)
Q Consensus        35 ---------------~~~~~~~~~~-g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~   98 (208)
                                     +.+++..+.. |.||||+|+..|+.+++++|++.|++   ++..+..|.||||.|+..++.++++
T Consensus       142 ~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad---~n~~d~~g~tpLh~A~~~~~~~iv~  218 (477)
T PHA02878        142 DDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN---VNIPDKTNNSPLHHAVKHYNKPIVH  218 (477)
T ss_pred             hhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCCHHHHH
Confidence                           1123345556 99999999999999999999998877   5677889999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCchHHHHHHHc-CCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHhhCCHHHHHHHHHcCCCCCCC
Q 028517           99 MLLSKGADVNLKNDGGRTALHYAASK-GWLKIVELLISRGAKINSKDK-VGCTALHRGASTGNSALCELLIEEGAEVDAT  176 (208)
Q Consensus        99 ~Ll~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  176 (208)
                      +|++.|++++.++..|.||+|+|+.. ++.+++++|+++|++++..+. .|.||||.|  .++.+++++|+++|+|++..
T Consensus       219 ~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~  296 (477)
T PHA02878        219 ILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSL  296 (477)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCc
Confidence            99999999999999999999999975 689999999999999998876 799999999  57789999999999999999


Q ss_pred             CCCCCCHHHHHHHhC-Ccccccccccc
Q 028517          177 DKAGQTPLMNAVICY-NKEFSGCSSSN  202 (208)
Q Consensus       177 ~~~g~t~l~~A~~~~-~~~~~~~l~~~  202 (208)
                      +.+|.||+++|+..+ ..++.+.|+++
T Consensus       297 d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        297 NSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             CCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            999999999999865 56778877764

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.5e-33  Score=220.79  Aligned_cols=200  Identities=21%  Similarity=0.259  Sum_probs=173.6

Q ss_pred             CcccccccCcHHHHHHHHc-----CChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcC---CHHHHHHHHhccccccc
Q 028517            2 DMDIDQTIKDKDLFKAAET-----GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESANV   73 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~-----g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~~~~ll~~~~~~~~   73 (208)
                      |++..+..+.+||+.|+..     +..++++.|++.+  .+++..+..|.||||+|+..+   +.+++++|++.|++   
T Consensus        63 dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G--adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad---  137 (489)
T PHA02798         63 NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG--ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD---  137 (489)
T ss_pred             CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC--CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC---
Confidence            5677888999999998864     6789999999876  578888999999999999875   78999999998887   


Q ss_pred             ccccCCCCCcHHHHHHhcCC---HHHHHHHHhCCCCCCCCC-CCCchHHHHHHHc----CCHHHHHHHHHcCCC------
Q 028517           74 VNAVDEEGWAPIHSAASIGN---VTIVEMLLSKGADVNLKN-DGGRTALHYAASK----GWLKIVELLISRGAK------  139 (208)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~~~----~~~~~~~~ll~~~~~------  139 (208)
                      ++..+..|.||||.|++.++   .+++++|+++|++++.++ ..+.||+|.++..    ++.+++++|+++|++      
T Consensus       138 vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~  217 (489)
T PHA02798        138 TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK  217 (489)
T ss_pred             ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc
Confidence            57778899999999999987   999999999999998875 4688999988764    367888888877654      


Q ss_pred             ---------------------------------CCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 028517          140 ---------------------------------INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMN  186 (208)
Q Consensus       140 ---------------------------------~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~  186 (208)
                                                       ++.+|..|.||||.|+..|+.+++++|+++|+|++.++..|.|||++
T Consensus       218 ~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~  297 (489)
T PHA02798        218 SHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFT  297 (489)
T ss_pred             cccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHH
Confidence                                             44466779999999999999999999999999999999999999999


Q ss_pred             HHHhCCcccccccccccccc
Q 028517          187 AVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       187 A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |+..++.++++.|++.++..
T Consensus       298 A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        298 AFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             HHHcCcHHHHHHHHccCCCH
Confidence            99999999999999987643

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=217.73  Aligned_cols=200  Identities=25%  Similarity=0.268  Sum_probs=163.8

Q ss_pred             CcccccccCcHHHHHHHHcC---ChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcC-CHHHHHHHHhccccccccccc
Q 028517            2 DMDIDQTIKDKDLFKAAETG---DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG-HPEVVEILLSVDESANVVNAV   77 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g---~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~~~~ll~~~~~~~~~~~~   77 (208)
                      +++..+..+.++||.|++.|   +.++++.|++.+  .+++.++..|.||||+|+..| +.+++++|++.|.+   ++..
T Consensus        39 ~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G--adin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~---in~~  113 (471)
T PHA03095         39 DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG--ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD---VNAK  113 (471)
T ss_pred             CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCC---CCCC
Confidence            56778889999999999999   999999999877  578888899999999999999 59999999998887   6778


Q ss_pred             CCCCCcHHHHHH--hcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCC-------
Q 028517           78 DEEGWAPIHSAA--SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVELLISRGAKINSKDKV-------  146 (208)
Q Consensus        78 ~~~~~~~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~-------  146 (208)
                      +..|.||||.|+  ..++.+++++|+++|++++.++..|.||+|+++..+  ..+++++|+++|++++..+..       
T Consensus       114 ~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~  193 (471)
T PHA03095        114 DKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHH  193 (471)
T ss_pred             CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            889999999999  556899999999999999999999999998877654  455666666665555444444       


Q ss_pred             ----------------------------CCcHHHHHHhhCCH--HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccc
Q 028517          147 ----------------------------GCTALHRGASTGNS--ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFS  196 (208)
Q Consensus       147 ----------------------------~~t~l~~A~~~~~~--~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  196 (208)
                                                  |.||||.|+..|..  .+++.|++.|++++.+|..|.||||+|+..|+.+++
T Consensus       194 ~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v  273 (471)
T PHA03095        194 HLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRAC  273 (471)
T ss_pred             HHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence                                        44555555544432  456667788888888899999999999999999999


Q ss_pred             cccccccccc
Q 028517          197 GCSSSNKTWS  206 (208)
Q Consensus       197 ~~l~~~~~~~  206 (208)
                      ++|++.++..
T Consensus       274 ~~LL~~gad~  283 (471)
T PHA03095        274 RRLIALGADI  283 (471)
T ss_pred             HHHHHcCCCC
Confidence            9999877654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.3e-32  Score=220.19  Aligned_cols=198  Identities=24%  Similarity=0.294  Sum_probs=171.1

Q ss_pred             Ccccc-cccCcHHHHHHHH--cCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCC--HHHHHHHHhcccccccccc
Q 028517            2 DMDID-QTIKDKDLFKAAE--TGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH--PEVVEILLSVDESANVVNA   76 (208)
Q Consensus         2 ~~~~~-~~~~~~~l~~a~~--~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~~~~ll~~~~~~~~~~~   76 (208)
                      |++.. +..|.+|||.|+.  .++.+++++|++.+  .+++..+..|.||||+|+..|+  .+++++|++.|++   ++.
T Consensus       168 DIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~G--ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD---VN~  242 (764)
T PHA02716        168 NLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNG--VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD---MDM  242 (764)
T ss_pred             CcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC---CCC
Confidence            45555 7789999998864  46789999999876  5788889999999999999995  5999999999987   567


Q ss_pred             cCCCCCcHHHHH-------------------------------------HhcCCHHHHHHHHhCCCCCCCCCCCCchHHH
Q 028517           77 VDEEGWAPIHSA-------------------------------------ASIGNVTIVEMLLSKGADVNLKNDGGRTALH  119 (208)
Q Consensus        77 ~~~~~~~~l~~a-------------------------------------~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~  119 (208)
                      ++..|.||||.|                                     ++.|+.+++++|+++|++++.+|..|.||||
T Consensus       243 kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH  322 (764)
T PHA02716        243 KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLH  322 (764)
T ss_pred             CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHH
Confidence            788999999865                                     3457889999999999999999999999999


Q ss_pred             HHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh--------------hCCHHHHHHHHHcCCCCCCCCCCCCCH
Q 028517          120 YAAS--KGWLKIVELLISRGAKINSKDKVGCTALHRGAS--------------TGNSALCELLIEEGAEVDATDKAGQTP  183 (208)
Q Consensus       120 ~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~--------------~~~~~~~~~Ll~~~~~~~~~~~~g~t~  183 (208)
                      +|+.  .++.+++++|+++|++++.+|..|+||||+|+.              .++.+++++|+++|++++.+|..|.||
T Consensus       323 ~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TP  402 (764)
T PHA02716        323 QYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTP  402 (764)
T ss_pred             HHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCCh
Confidence            9764  457899999999999999999999999999865              368899999999999999999999999


Q ss_pred             HHH----HHHhCCcccccccccccc
Q 028517          184 LMN----AVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       184 l~~----A~~~~~~~~~~~l~~~~~  204 (208)
                      ||.    |...+..+++++|++.+.
T Consensus       403 Lh~y~~~a~n~~~~dIvklLis~~~  427 (764)
T PHA02716        403 LTSYICTAQNYMYYDIIDCLISDKV  427 (764)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhCcc
Confidence            993    334567899999988653

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.4e-32  Score=215.36  Aligned_cols=199  Identities=20%  Similarity=0.255  Sum_probs=131.6

Q ss_pred             CcccccccCcHHHHHHHHc---CChHHHHHHHHHhhhhhc-cCCCCCCchHHHHHHhc--CCHHHHHHHHhccccccccc
Q 028517            2 DMDIDQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKSL-SLRNDDDRTLLHVAASC--GHPEVVEILLSVDESANVVN   75 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~---g~~~~~~~l~~~~~~~~~-~~~~~~g~t~L~~A~~~--g~~~~~~~ll~~~~~~~~~~   75 (208)
                      |++..+..|.+||+.|+..   |+.+++++|++.+  .++ ...+..|.||||+|+..  ++.+++++|++.|+++   +
T Consensus       100 din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G--adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi---~  174 (494)
T PHA02989        100 DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG--INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNL---F  174 (494)
T ss_pred             CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC--CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc---c
Confidence            3445555556666555443   4556666665544  344 44555566666655432  4556666666555542   2


Q ss_pred             c-cCCCCCcHHHHHHhc----CCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHc------CCHHHHHHHHHcCCCCCCCC
Q 028517           76 A-VDEEGWAPIHSAASI----GNVTIVEMLLSKGADVNLKNDGGRTALHYAASK------GWLKIVELLISRGAKINSKD  144 (208)
Q Consensus        76 ~-~~~~~~~~l~~a~~~----~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~------~~~~~~~~ll~~~~~~~~~~  144 (208)
                      . .+..|.|||+.|+..    ++.+++++|+++|++++.++..+.++++.++..      +..+++++|+. +++++.+|
T Consensus       175 ~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d  253 (494)
T PHA02989        175 EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKD  253 (494)
T ss_pred             ccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCC
Confidence            2 344555666655443    255666666666666655555555665554432      23344444433 46667777


Q ss_pred             CCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          145 KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       145 ~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      ..|.||||+|+..|+.+++++|+++|+|++.++..|.||||+|+..++.+++++|++.++..
T Consensus       254 ~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        254 KKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             CCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence            88999999999999999999999999999999999999999999999999999999977643

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-31  Score=220.45  Aligned_cols=202  Identities=26%  Similarity=0.334  Sum_probs=172.7

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccc---------
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN---------   72 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~---------   72 (208)
                      |++..+..|.+|||.|++.|+.++|++|++.+  .+.+..+..|.||||+|+..|+.+++++|++.+....         
T Consensus       170 dvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~G--ad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~a  247 (682)
T PHA02876        170 DVNAKDIYCITPIHYAAERGNAKMVNLLLSYG--ADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKA  247 (682)
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC--CCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHH
Confidence            56778888999999999999999999999876  4667778889999999999999998888876543211         


Q ss_pred             -----------------cccccCCCCCcHHHHHHhcCCH-HHHHHHHhCCCCCCCCCCCCchHHHHHHHcC-CHHHHHHH
Q 028517           73 -----------------VVNAVDEEGWAPIHSAASIGNV-TIVEMLLSKGADVNLKNDGGRTALHYAASKG-WLKIVELL  133 (208)
Q Consensus        73 -----------------~~~~~~~~~~~~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~l  133 (208)
                                       ..+..+..|.||||.|+..++. +++++|++.|++++.++..|.||+|+|+..| ..++++.|
T Consensus       248 i~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~L  327 (682)
T PHA02876        248 IRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTL  327 (682)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHH
Confidence                             1344566789999999999886 5889999999999999999999999999988 58899999


Q ss_pred             HHcCCCCCCCCCCCCcHHHHHHhh-CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          134 ISRGAKINSKDKVGCTALHRGAST-GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       134 l~~~~~~~~~~~~~~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      +..|++++..+..|.||||.|+.. +..+++++|++.|++++.++..|.||||+|+..|+.+++++|++.++.
T Consensus       328 l~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad  400 (682)
T PHA02876        328 IMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD  400 (682)
T ss_pred             HHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            999999999999999999999875 467888889999999999999999999999999999999999887654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6.8e-33  Score=206.72  Aligned_cols=190  Identities=31%  Similarity=0.421  Sum_probs=173.5

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHhhhhhcc--------CCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccC
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLS--------LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD   78 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~--------~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~   78 (208)
                      ...+.+||..|+++|+.++|++|++.. ..+++        -..-.|.+||..|+..||+++++.|+..+++   +|...
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~-~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~---VN~tT  114 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHC-RASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS---VNDTT  114 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHh-cCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc---ccccc
Confidence            345679999999999999999999965 22222        2245788999999999999999999998866   77888


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 028517           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (208)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~  158 (208)
                      ....|||-.||.-|+.+++|+|+++|++++..|+.|.|.|++|+..|+.+++++|++.|+|++.++..|+|+||.++..|
T Consensus       115 ~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  115 RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESG  194 (615)
T ss_pred             ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcc
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccc
Q 028517          159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSS  201 (208)
Q Consensus       159 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  201 (208)
                      +.+++++|+.+|+.++ +|..|.|||..|...|..++|..|++
T Consensus       195 ~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cHHHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999998885 46779999999999999999999986

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-31  Score=220.25  Aligned_cols=200  Identities=27%  Similarity=0.303  Sum_probs=167.8

Q ss_pred             CcccccccCcHHHHHHHHcCCh-HHHHHHHHHhhhhhccCCCCCCchHHHHHHhcC-CHHHHHHHHhcccccccccccCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDS-STFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG-HPEVVEILLSVDESANVVNAVDE   79 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~-~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~~~~ll~~~~~~~~~~~~~~   79 (208)
                      +++..+..+.+|||.|+..|+. ++++.|++.+  .+++..+..|.||||+|+..| +.++++.|+..+.+   ++..+.
T Consensus       265 ~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g--adin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad---in~~d~  339 (682)
T PHA02876        265 SVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG--ADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD---VNAADR  339 (682)
T ss_pred             CCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC---CCCccc
Confidence            4556677889999999999987 4777777655  567778889999999999988 58999999988776   566778


Q ss_pred             CCCcHHHHHHhc-CCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 028517           80 EGWAPIHSAASI-GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (208)
Q Consensus        80 ~~~~~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~  158 (208)
                      .|.||||.|+.. ++.++++.|++.|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+..+
T Consensus       340 ~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~  419 (682)
T PHA02876        340 LYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGT  419 (682)
T ss_pred             CCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcC
Confidence            889999998875 4688888999999999999999999999999999999999999999998888888889999888765


Q ss_pred             C-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC-Ccccccccccccccc
Q 028517          159 N-SALCELLIEEGAEVDATDKAGQTPLMNAVICY-NKEFSGCSSSNKTWS  206 (208)
Q Consensus       159 ~-~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~l~~~~~~~  206 (208)
                      . ..++++|+++|++++.+|.+|.||||+|+..+ +.+++++|++.++..
T Consensus       420 ~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        420 NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV  469 (682)
T ss_pred             CHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC
Confidence            5 46788888999999999999999999998876 678999998887654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.5e-31  Score=216.49  Aligned_cols=200  Identities=21%  Similarity=0.202  Sum_probs=166.3

Q ss_pred             CcccccccCcHHHHHH-------------------------------------HHcCChHHHHHHHHHhhhhhccCCCCC
Q 028517            2 DMDIDQTIKDKDLFKA-------------------------------------AETGDSSTFKSLSKQQLLKSLSLRNDD   44 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a-------------------------------------~~~g~~~~~~~l~~~~~~~~~~~~~~~   44 (208)
                      |++..+..+.+||+.|                                     ++.|+.++++.|++.+  .+++.+|..
T Consensus       239 DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G--AdIN~kD~~  316 (764)
T PHA02716        239 DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG--VKLHYKDSA  316 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC--CceeccCCC
Confidence            5677788888888864                                     4567888888888765  467788999


Q ss_pred             CchHHHHHHh--cCCHHHHHHHHhcccccccccccCCCCCcHHHHHHh--------------cCCHHHHHHHHhCCCCCC
Q 028517           45 DRTLLHVAAS--CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS--------------IGNVTIVEMLLSKGADVN  108 (208)
Q Consensus        45 g~t~L~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~--------------~~~~~~~~~Ll~~~~~~~  108 (208)
                      |+||||+|+.  .++.+++++|++.|++   ++.++..|.||||.|+.              .++.+++++|+++|++++
T Consensus       317 G~TPLH~Aaa~~~~~~eIVklLLe~GAD---IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn  393 (764)
T PHA02716        317 GRTCLHQYILRHNISTDIIKLLHEYGND---LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT  393 (764)
T ss_pred             CCCHHHHHHHHhCCCchHHHHHHHcCCC---CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCC
Confidence            9999999864  5689999999998876   67788999999999865              368999999999999999


Q ss_pred             CCCCCCchHHHHH----HHcCCHHHHHHHHHcCC----------------------------------------------
Q 028517          109 LKNDGGRTALHYA----ASKGWLKIVELLISRGA----------------------------------------------  138 (208)
Q Consensus       109 ~~~~~~~~~l~~a----~~~~~~~~~~~ll~~~~----------------------------------------------  138 (208)
                      .++..|.||||.+    ...+..+++++|++.++                                              
T Consensus       394 ~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~  473 (764)
T PHA02716        394 AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDS  473 (764)
T ss_pred             CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccc
Confidence            9999999999942    23456788888776532                                              


Q ss_pred             ---------------CCCCCCCCCCcHHHHHHhhCCH-----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCc-----
Q 028517          139 ---------------KINSKDKVGCTALHRGASTGNS-----ALCELLIEEGAEVDATDKAGQTPLMNAVICYNK-----  193 (208)
Q Consensus       139 ---------------~~~~~~~~~~t~l~~A~~~~~~-----~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~-----  193 (208)
                                     +.+..|..|.||||+|+..|+.     +++++|++.|++++.++.+|+||||+|+++|+.     
T Consensus       474 ~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~  553 (764)
T PHA02716        474 TKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQW  553 (764)
T ss_pred             cccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHH
Confidence                           1233466799999999998876     556999999999999999999999999999987     


Q ss_pred             ccccccccccccc
Q 028517          194 EFSGCSSSNKTWS  206 (208)
Q Consensus       194 ~~~~~l~~~~~~~  206 (208)
                      ++++.|+++++..
T Consensus       554 eIvk~LL~~ga~~  566 (764)
T PHA02716        554 YIVKNILDKRPNV  566 (764)
T ss_pred             HHHHHHHhcCCCc
Confidence            9999999988654

>PHA02946 ankyin-like protein; Provisional

Probab=99.98  E-value=8.2e-31  Score=205.05  Aligned_cols=185  Identities=21%  Similarity=0.250  Sum_probs=164.0

Q ss_pred             cHHHHHHH--HcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517           11 DKDLFKAA--ETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (208)
Q Consensus        11 ~~~l~~a~--~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (208)
                      .+.||.++  ..++.++++.|++.+  .+++.++..|.||||+|+..|+.+++++|++.|++   ++.++..|.||||+|
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~G--advn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd---in~~d~~g~TpLh~A  112 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRG--YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD---PNACDKQHKTPLYYL  112 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCc--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---CCCCCCCCCCHHHHH
Confidence            56777655  445778999999876  57888899999999999999999999999998877   567889999999999


Q ss_pred             HhcC--CHHHHHHHHhCCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC--HHHH
Q 028517           89 ASIG--NVTIVEMLLSKGADVNL-KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN--SALC  163 (208)
Q Consensus        89 ~~~~--~~~~~~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~--~~~~  163 (208)
                      +..+  ..+++++|+++|++++. .+..|.||++ |+..+..+++++|+++|++++..|..|.||||.|+..++  .+++
T Consensus       113 ~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v  191 (446)
T PHA02946        113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTI  191 (446)
T ss_pred             HHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHH
Confidence            8765  48999999999999985 5889999997 667799999999999999999999999999999887554  6899


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhC--Cccccccccc
Q 028517          164 ELLIEEGAEVDATDKAGQTPLMNAVICY--NKEFSGCSSS  201 (208)
Q Consensus       164 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~--~~~~~~~l~~  201 (208)
                      ++|+++|++++.+|.+|.||||+|+..+  +.+++++|++
T Consensus       192 ~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~  231 (446)
T PHA02946        192 SWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP  231 (446)
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc
Confidence            9999999999999999999999999986  7789998885

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=199.21  Aligned_cols=186  Identities=20%  Similarity=0.096  Sum_probs=165.4

Q ss_pred             HHHHcCChHHHHHHHHHhhhhhcc------CCCCCCchHHHHHHh--cCCHHHHHHHHhcccccccccccCCCCCcHHHH
Q 028517           16 KAAETGDSSTFKSLSKQQLLKSLS------LRNDDDRTLLHVAAS--CGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (208)
Q Consensus        16 ~a~~~g~~~~~~~l~~~~~~~~~~------~~~~~g~t~L~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~   87 (208)
                      .|+..+..|+++.|+..+.  +..      .++..++|+||+++.  .|+.+++++|++.|++.   +.  ..+.||+|.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~--~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI---n~--~~~~t~lh~  155 (437)
T PHA02795         83 LFAYITYKDIISALVSKNY--MEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI---YK--IECLNAYFR  155 (437)
T ss_pred             HHhhcchHHHHHHHHhccc--ccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC---CC--CCCCCHHHH
Confidence            8999999999999998774  322      467789999999999  89999999999999984   33  245899999


Q ss_pred             HHhcCCHHHHHHHHhCCCCCCCCC------CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517           88 AASIGNVTIVEMLLSKGADVNLKN------DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (208)
Q Consensus        88 a~~~~~~~~~~~Ll~~~~~~~~~~------~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~  161 (208)
                      |+..++.+++++|+++|+......      ..+.+++|.+...+..+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus       156 A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~e  235 (437)
T PHA02795        156 GICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYID  235 (437)
T ss_pred             HHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999997433222      24778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCC--------ccccccccccccccCC
Q 028517          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYN--------KEFSGCSSSNKTWSGC  208 (208)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~--------~~~~~~l~~~~~~~~~  208 (208)
                      ++++|+++|++++.++..|.||||+|+..|+        .+++++|+++++..+|
T Consensus       236 iVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        236 LVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            9999999999999999999999999999995        5899999999987776

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=4.7e-31  Score=203.35  Aligned_cols=184  Identities=33%  Similarity=0.424  Sum_probs=170.1

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCC-CCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~   80 (208)
                      +++..|..+-+.||.|+.+++++++++|++.+.  +.+... .-+.||||.|++.|+..++++|++.|++   +..+|..
T Consensus        70 ~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga--dvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd---pt~~D~~  144 (600)
T KOG0509|consen   70 SVNNPDREGVTLLHWAAINNRLDVARYLISHGA--DVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD---PTLKDKQ  144 (600)
T ss_pred             CCCCCCcCCccceeHHHHcCcHHHHHHHHHcCC--CccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC---CceecCC
Confidence            456678899999999999999999999999874  666555 6789999999999999999999999998   5778899


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhhCC
Q 028517           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGN  159 (208)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~A~~~~~  159 (208)
                      |.+|+|.|++.++...+-+|+.++.+++.+|..|.||+++|+..+....+..|+..++.+...| .+|.||||+|+..|+
T Consensus       145 G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN  224 (600)
T KOG0509|consen  145 GLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGN  224 (600)
T ss_pred             CCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999888999999999999887 889999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Q 028517          160 SALCELLIEEGAEVDATDKAGQTPLMNAVIC  190 (208)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~  190 (208)
                      ..++..+++.|++.+..|.+|+||+..|...
T Consensus       225 ~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  225 LTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999966677899999999999999999887

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=9.9e-31  Score=206.01  Aligned_cols=200  Identities=28%  Similarity=0.359  Sum_probs=157.2

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHh---hhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccc-----------
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQ---LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN-----------   72 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~---~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~-----------   72 (208)
                      +..+..+||.|++.|..|.++.++.+.   ....++..+..+.+|||.|...|+.+.++.+++.++...           
T Consensus       184 ~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~k  263 (929)
T KOG0510|consen  184 DIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEK  263 (929)
T ss_pred             cCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHH
Confidence            333444444444444444444444411   123445567777888888888888888888887655432           


Q ss_pred             -cccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHH-cC-CCCCCCCCCCCc
Q 028517           73 -VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS-RG-AKINSKDKVGCT  149 (208)
Q Consensus        73 -~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~-~~~~~~~~~~~t  149 (208)
                       .++..|..|.||||+|++.|++++++.|+..|++++.++.++.||+|.|+..|++++++-|++ .+ ...+..|-.|.|
T Consensus       264 elv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~t  343 (929)
T KOG0510|consen  264 ELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMT  343 (929)
T ss_pred             HHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCC
Confidence             244557889999999999999999999999999999999999999999999999999999998 33 345667788999


Q ss_pred             HHHHHHhhCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          150 ALHRGASTGNSALCELLIEEGAEVD---ATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       150 ~l~~A~~~~~~~~~~~Ll~~~~~~~---~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |||+|++.|+..+++.|+++|+...   ..|++|.||||.|+..|+..+|+.|++++.+.
T Consensus       344 pLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  344 PLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             chhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            9999999999999999999998876   45999999999999999999999999999875

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1e-29  Score=202.35  Aligned_cols=198  Identities=20%  Similarity=0.222  Sum_probs=155.7

Q ss_pred             CcccccccCcHHHHHHHHcC--ChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcC------CHHHHHHHHhccccccc
Q 028517            2 DMDIDQTIKDKDLFKAAETG--DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG------HPEVVEILLSVDESANV   73 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g--~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g------~~~~~~~ll~~~~~~~~   73 (208)
                      |++.. ..+.++++.++..+  +.++++.|++.+  .+++.++ .+.||||.|+..+      +.+++++|++.|++   
T Consensus        28 dvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~G--Advn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad---  100 (494)
T PHA02989         28 DVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNG--ADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGAD---  100 (494)
T ss_pred             Ccccc-cCCCCHHHHHHhcCCCChHHHHHHHHcC--CCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC---
Confidence            44554 45778876655443  678999998876  3555544 5688999887654      46789999988877   


Q ss_pred             ccccCCCCCcHHHHHHhc---CCHHHHHHHHhCCCCC-CCCCCCCchHHHHHHHc--CCHHHHHHHHHcCCCCCC-CCCC
Q 028517           74 VNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADV-NLKNDGGRTALHYAASK--GWLKIVELLISRGAKINS-KDKV  146 (208)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~-~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~-~~~~  146 (208)
                      ++..+..|.|||+.|+..   ++.+++++|+++|+++ +.++..|.||||+|+..  ++.+++++|+++|++++. .+..
T Consensus       101 in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~  180 (494)
T PHA02989        101 INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLY  180 (494)
T ss_pred             CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccccc
Confidence            567778889999877654   6789999999999998 78888899999988754  578899999999998887 5678


Q ss_pred             CCcHHHHHHhhC----CHHHHHHHHHcCCCCC--------------------------------------CCCCCCCCHH
Q 028517          147 GCTALHRGASTG----NSALCELLIEEGAEVD--------------------------------------ATDKAGQTPL  184 (208)
Q Consensus       147 ~~t~l~~A~~~~----~~~~~~~Ll~~~~~~~--------------------------------------~~~~~g~t~l  184 (208)
                      |.||||.|++.+    +.+++++|+++|++++                                      .+|..|.|||
T Consensus       181 g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL  260 (494)
T PHA02989        181 GLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPL  260 (494)
T ss_pred             CCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHH
Confidence            889998887654    7888888888887654                                      3455699999


Q ss_pred             HHHHHhCCcccccccccccccc
Q 028517          185 MNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       185 ~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |+|+..|+.+++++|+++++..
T Consensus       261 ~~Aa~~~~~~~v~~LL~~Gadi  282 (494)
T PHA02989        261 LISAKVDNYEAFNYLLKLGDDI  282 (494)
T ss_pred             HHHHHhcCHHHHHHHHHcCCCc
Confidence            9999999999999999988754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=205.51  Aligned_cols=191  Identities=18%  Similarity=0.160  Sum_probs=160.0

Q ss_pred             ccccccCcHHHHHHHHc---CChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHH----HHHHHHhcccccccccc
Q 028517            4 DIDQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPE----VVEILLSVDESANVVNA   76 (208)
Q Consensus         4 ~~~~~~~~~~l~~a~~~---g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~----~~~~ll~~~~~~~~~~~   76 (208)
                      +..|..++++||.|+..   |+.+++++|++.+  .+....+..|.||||.|+.+|+.+    +++.|++.+...   +.
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g--a~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~---n~  100 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSG--TNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS---NI  100 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCC--CCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC---CC
Confidence            44577899999997555   8899999999866  577788999999999999999965    456676543321   22


Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHH--HcCCHHHHHHHHHcCCCCCCCCC---CC----
Q 028517           77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA--SKGWLKIVELLISRGAKINSKDK---VG----  147 (208)
Q Consensus        77 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~---~~----  147 (208)
                      .  ...+++++|+..++.+++++|+++|++++.+|..|.||++.++  ..++.+++++|+++|++++..+.   .|    
T Consensus       101 ~--~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~  178 (661)
T PHA02917        101 N--DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYD  178 (661)
T ss_pred             C--CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccc
Confidence            1  2236778899999999999999999999999999999999654  57899999999999999976543   23    


Q ss_pred             -------CcHHHHHHh-----------hCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCc--cccccccc
Q 028517          148 -------CTALHRGAS-----------TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK--EFSGCSSS  201 (208)
Q Consensus       148 -------~t~l~~A~~-----------~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~--~~~~~l~~  201 (208)
                             .||||+|+.           .++.+++++|+++|++++.++.+|.||||+|+..|+.  |+|++|+.
T Consensus       179 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        179 DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence                   599999986           4689999999999999999999999999999999996  69999975

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=7.1e-30  Score=201.25  Aligned_cols=203  Identities=27%  Similarity=0.317  Sum_probs=151.2

Q ss_pred             CCcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccc--ccccccccC
Q 028517            1 MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDE--SANVVNAVD   78 (208)
Q Consensus         1 ~~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~--~~~~~~~~~   78 (208)
                      +|+++.+..+.||||.|+..++.|..+.|+..+  .++...+.+|.+|+|.|+.+|..++++.++....  ....++..+
T Consensus       145 ~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~--a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~  222 (929)
T KOG0510|consen  145 ADVNLEDENGFTPLHLAARKNKVEAKKELINKG--ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDN  222 (929)
T ss_pred             CCccccccCCCchhhHHHhcChHHHHHHHHhcC--CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccccccc
Confidence            366777777777777777777777556665544  4666667777777777777777777777775111  111245556


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCCC---------------CCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 028517           79 EEGWAPIHSAASIGNVTIVEMLLSKGAD---------------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK  143 (208)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~---------------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  143 (208)
                      ..+.+|||.|+..|++++++.+++.|..               ++..|++|.||+|+|++.|+.++++.|+.+|++++.+
T Consensus       223 n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k  302 (929)
T KOG0510|consen  223 NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK  302 (929)
T ss_pred             CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc
Confidence            6778888888888888888888886644               3345677888888888888888888888888888888


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHH-cC-CCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          144 DKVGCTALHRGASTGNSALCELLIE-EG-AEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       144 ~~~~~t~l~~A~~~~~~~~~~~Ll~-~~-~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      +.++.||||.|+++|+++.++-|++ .+ ..++..|..|.||+|.|++.|+..+++.|+..++.
T Consensus       303 n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~  366 (929)
T KOG0510|consen  303 NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGAL  366 (929)
T ss_pred             CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChh
Confidence            8888888888888888888888887 43 44566677888888888888888888888877654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.7e-29  Score=199.70  Aligned_cols=193  Identities=20%  Similarity=0.267  Sum_probs=165.3

Q ss_pred             CcHHHHHHHH--cCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhc-----CCHHHHHHHHhcccccccccccCCCCC
Q 028517           10 KDKDLFKAAE--TGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC-----GHPEVVEILLSVDESANVVNAVDEEGW   82 (208)
Q Consensus        10 ~~~~l~~a~~--~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (208)
                      +.+++.....  .++.++++.|++.+  .+++..+..|.||||.|+..     ++.+++++|++.|++   ++..+..|.
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~G--advn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad---iN~~d~~G~  110 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLG--ANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD---INKKNSDGE  110 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCC--CCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC---CCCCCCCcC
Confidence            4455543333  44789999999877  58888899999999998864     678999999999887   677888999


Q ss_pred             cHHHHHHhcC---CHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC---HHHHHHHHHcCCCCCCCC-CCCCcHHHHHH
Q 028517           83 APIHSAASIG---NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW---LKIVELLISRGAKINSKD-KVGCTALHRGA  155 (208)
Q Consensus        83 ~~l~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~-~~~~t~l~~A~  155 (208)
                      ||||.|+..+   +.+++++|+++|++++.++..|.||+|+|+..++   .+++++|+++|++++..+ ..|.||+|.++
T Consensus       111 TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~  190 (489)
T PHA02798        111 TPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYF  190 (489)
T ss_pred             cHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHH
Confidence            9999999875   7899999999999999999999999999999987   999999999999998875 46889999887


Q ss_pred             hh----CCHHHHHHHHHcCCCC---------------------------------------CCCCCCCCCHHHHHHHhCC
Q 028517          156 ST----GNSALCELLIEEGAEV---------------------------------------DATDKAGQTPLMNAVICYN  192 (208)
Q Consensus       156 ~~----~~~~~~~~Ll~~~~~~---------------------------------------~~~~~~g~t~l~~A~~~~~  192 (208)
                      ..    ++.+++++|+++|+++                                       +.+|..|.||||+|+..++
T Consensus       191 ~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~  270 (489)
T PHA02798        191 KYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNN  270 (489)
T ss_pred             HhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCc
Confidence            64    4788888888877644                                       4466789999999999999


Q ss_pred             ccccccccccccccC
Q 028517          193 KEFSGCSSSNKTWSG  207 (208)
Q Consensus       193 ~~~~~~l~~~~~~~~  207 (208)
                      .+++++|++.++..+
T Consensus       271 ~~~v~~LL~~GAdin  285 (489)
T PHA02798        271 RKIFEYLLQLGGDIN  285 (489)
T ss_pred             HHHHHHHHHcCCccc
Confidence            999999999887654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=6.3e-30  Score=190.98  Aligned_cols=191  Identities=28%  Similarity=0.370  Sum_probs=167.1

Q ss_pred             HHHHHHcCChHHHHHHHHHhh---hhhccCCCCCCchHHHHHHhcCCHHHHHHHHh-cccccccccc-----cCCCCCcH
Q 028517           14 LFKAAETGDSSTFKSLSKQQL---LKSLSLRNDDDRTLLHVAASCGHPEVVEILLS-VDESANVVNA-----VDEEGWAP   84 (208)
Q Consensus        14 l~~a~~~g~~~~~~~l~~~~~---~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~-~~~~~~~~~~-----~~~~~~~~   84 (208)
                      ...|++.|....++.|+....   ..+.-....+|.|||..||++|+.+++++|++ .+++++....     ....|-+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            448999999999999986532   12222346788999999999999999999998 4444322111     12357789


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 028517           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE  164 (208)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~  164 (208)
                      |-.|...|++++++.|+++|+.++.....+.|||.-||..|+.+++++|+++|+|++..+..|.|.|++||..|+.++++
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHH
Confidence            99999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          165 LLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       165 ~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      +|++.|+|++.++..|.|+||-++..|+.||++.|+.+++
T Consensus       168 yLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga  207 (615)
T KOG0508|consen  168 YLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA  207 (615)
T ss_pred             HHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999998765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=174.42  Aligned_cols=158  Identities=25%  Similarity=0.233  Sum_probs=140.6

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcC--CHHHHHHHHhCCCCCCCCC-CCCchHHH
Q 028517           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKN-DGGRTALH  119 (208)
Q Consensus        43 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~-~~~~~~l~  119 (208)
                      +.+.|||+.|+..|+.++++.|+..      .+..+..|.||||.|+..+  +.+++++|+++|++++.++ ..|.||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh   92 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALH   92 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHH
Confidence            4568999999999999999999863      3556788999999999854  8999999999999999987 48999999


Q ss_pred             HHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh--hCCHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHhCCc
Q 028517          120 YAASK---GWLKIVELLISRGAKINSKDKVGCTALHRGAS--TGNSALCELLIEEGAEVDATDKAGQTPLMN-AVICYNK  193 (208)
Q Consensus       120 ~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~-A~~~~~~  193 (208)
                      +|+..   +..+++++|+++|++++.++..|.||||.|+.  .++.+++++|+++|++++.++.+|.||+|. |+..++.
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCH
Confidence            98764   47899999999999999999999999999886  468999999999999999999999999995 6678899


Q ss_pred             ccccccccccccc
Q 028517          194 EFSGCSSSNKTWS  206 (208)
Q Consensus       194 ~~~~~l~~~~~~~  206 (208)
                      +++++|++++...
T Consensus       173 ~iv~~Ll~~Gadi  185 (209)
T PHA02859        173 KIFDFLTSLGIDI  185 (209)
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999987643

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=9.4e-28  Score=200.64  Aligned_cols=180  Identities=25%  Similarity=0.327  Sum_probs=163.0

Q ss_pred             ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHH
Q 028517            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (208)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~   87 (208)
                      .....+|+.|+..|+.+.++.|++.+  .+++..|..|.||||+|+..|+.+++++|++.|.+   ++..+..|.||||.
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G--~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad---in~~d~~G~TpL~~  597 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN---VHIRDANGNTALWN  597 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC---CCCcCCCCCCHHHH
Confidence            34578999999999999999999766  57888999999999999999999999999998876   67788899999999


Q ss_pred             HHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI  167 (208)
Q Consensus        88 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll  167 (208)
                      |+..|+.+++++|++.+...+.  ..+.+++|.|+..|+.++++.|+++|++++..|..|.||||.|+..|+.+++++|+
T Consensus       598 A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        598 AISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            9999999999999998765543  45778999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCC-CCHHHHHHHhCCcc
Q 028517          168 EEGAEVDATDKAG-QTPLMNAVICYNKE  194 (208)
Q Consensus       168 ~~~~~~~~~~~~g-~t~l~~A~~~~~~~  194 (208)
                      ++|++++..+.+| .+|...+......+
T Consensus       676 ~~GAdv~~~~~~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        676 MNGADVDKANTDDDFSPTELRELLQKRE  703 (823)
T ss_pred             HcCCCCCCCCCCCCCCHHHHHHHHHHhh
Confidence            9999999999888 99999887655444

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=190.24  Aligned_cols=194  Identities=14%  Similarity=0.128  Sum_probs=160.9

Q ss_pred             cccccCcHHHHHHHHcC---ChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcC--CHHHHHHHHhcccccccccccCC
Q 028517            5 IDQTIKDKDLFKAAETG---DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVDE   79 (208)
Q Consensus         5 ~~~~~~~~~l~~a~~~g---~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~ll~~~~~~~~~~~~~~   79 (208)
                      ..|..|+|+||.|+..|   +.++++.|++.+  .+++.+|..|.||||.|+..+  +.+++++|++.|.... .+..+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~G--Adin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~-~~~~~~  112 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRG--VERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNAS-NELTSN  112 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCC--CCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCC-cccccc
Confidence            56778999999999997   499999999876  688889999999999999976  7999999999876543 344566


Q ss_pred             CCCcHHHHHHh--cCCHHHHHHHHh-CCCCCCCCCC-----CCchHHHHHHHcCCHHHHHHHHHcCCCCCC-------CC
Q 028517           80 EGWAPIHSAAS--IGNVTIVEMLLS-KGADVNLKND-----GGRTALHYAASKGWLKIVELLISRGAKINS-------KD  144 (208)
Q Consensus        80 ~~~~~l~~a~~--~~~~~~~~~Ll~-~~~~~~~~~~-----~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~-------~~  144 (208)
                      .+.+||+.++.  .++.+++++|++ .+.+++....     .|.+|++++...+..+++++|+++|++++.       .+
T Consensus       113 ~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~  192 (672)
T PHA02730        113 INDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYD  192 (672)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccccc
Confidence            68889998888  788999999997 6677775532     789999999999999999999999999851       23


Q ss_pred             CCCCcH-HHHH------HhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHH--HHHhCCccccccccc
Q 028517          145 KVGCTA-LHRG------ASTGNSALCELLIEEGAEVDATDKAGQTPLMN--AVICYNKEFSGCSSS  201 (208)
Q Consensus       145 ~~~~t~-l~~A------~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~--A~~~~~~~~~~~l~~  201 (208)
                      ....+| |+++      ...+..|++++|+++|++++.++.+|.||||+  |...++.|++++|++
T Consensus       193 ~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        193 SDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             CCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            334444 4423      34568999999999999999999999999996  555677999999998

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=1.5e-27  Score=197.38  Aligned_cols=199  Identities=33%  Similarity=0.420  Sum_probs=176.6

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (208)
                      .+..+..|.+++|.|+..|.+-..-.++.++ +.+++.....|.||||.|+..|+.+.++.+++.+..   .+.....+-
T Consensus       433 ~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~-g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~---~~~~~~~~l  508 (1143)
T KOG4177|consen  433 PNAKAKLGYTPLHVAAKKGRYLQIARLLLQY-GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN---DNLDAKKGL  508 (1143)
T ss_pred             hhhHhhcCCChhhhhhhcccHhhhhhhHhhc-CCCcchhccccCcchhhhhccCCchHHHHhhhcCCc---cCccchhcc
Confidence            3456677899999999999544444444444 467888889999999999999999999999976633   445556889


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~  162 (208)
                      +++|.+...+...+++.++++|+..+.++..++||||.|+..|+.+++++|+++|++.+.+++.|+||||.|+..|+.++
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i  588 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDI  588 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      +++|+++|++++..+.+|.|||++|++.|+.++++.|...+..
T Consensus       589 ~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  589 AELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            9999999999999999999999999999999999998875543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=2e-26  Score=183.81  Aligned_cols=200  Identities=15%  Similarity=0.160  Sum_probs=164.0

Q ss_pred             CcccccccCcHHHHH--HHHcCChHHHHHHHH--------------------------------HhhhhhccC-------
Q 028517            2 DMDIDQTIKDKDLFK--AAETGDSSTFKSLSK--------------------------------QQLLKSLSL-------   40 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~--a~~~g~~~~~~~l~~--------------------------------~~~~~~~~~-------   40 (208)
                      |++..+..|+||||.  |...|+.|+++.|++                                .+  .+...       
T Consensus       227 dIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~  304 (672)
T PHA02730        227 SIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYN--VDMEIVNLLIEG  304 (672)
T ss_pred             CCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCC--cchHHHHHHhhc
Confidence            678889999999985  555677999999998                                11  11111       


Q ss_pred             -------------CCCCCch---------------------HHHHHHhcC---CHHHHHHHHhcccccccccccCCCCCc
Q 028517           41 -------------RNDDDRT---------------------LLHVAASCG---HPEVVEILLSVDESANVVNAVDEEGWA   83 (208)
Q Consensus        41 -------------~~~~g~t---------------------~L~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (208)
                                   .+..|.+                     .|+.-..++   +.+++++|++.|++.   +.. ..|.|
T Consensus       305 ~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI---N~k-~~G~T  380 (672)
T PHA02730        305 RHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM---DKT-TDNNY  380 (672)
T ss_pred             cCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC---CcC-CCCCc
Confidence                         3445544                     566666655   689999999999984   443 68999


Q ss_pred             HHHHHHhcCC----HHHHHHHHhCCC--CCCCCCCCCchHHHH---HHHcC---------CHHHHHHHHHcCCCCCCCCC
Q 028517           84 PIHSAASIGN----VTIVEMLLSKGA--DVNLKNDGGRTALHY---AASKG---------WLKIVELLISRGAKINSKDK  145 (208)
Q Consensus        84 ~l~~a~~~~~----~~~~~~Ll~~~~--~~~~~~~~~~~~l~~---a~~~~---------~~~~~~~ll~~~~~~~~~~~  145 (208)
                      |||.|+..++    .+++++|+++|+  +++.++..|.||+|.   +...+         ..+++++|+.+|++++.+|.
T Consensus       381 pLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~  460 (672)
T PHA02730        381 PLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDN  460 (672)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCC
Confidence            9999988875    899999999997  588889999999984   32222         23569999999999999999


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHh--CCccccccccccccccC
Q 028517          146 VGCTALHRGASTGNSALCELLIEEGAEVDATDK-AGQTPLMNAVIC--YNKEFSGCSSSNKTWSG  207 (208)
Q Consensus       146 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~g~t~l~~A~~~--~~~~~~~~l~~~~~~~~  207 (208)
                      .|.||||+|+..++.+++++|+++|++++..+. .|.||+++|+..  ++.+++++|+++++...
T Consensus       461 ~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        461 ENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            999999999999999999999999999999997 599999999974  78999999999998654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=4.6e-26  Score=190.54  Aligned_cols=160  Identities=25%  Similarity=0.282  Sum_probs=147.6

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (208)
Q Consensus        42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (208)
                      +..+.++|+.|+..|+.++++.|++.|.+   ++..|..|.||||.|+..|+.+++++|+++|++++.+|..|.||+|.|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d---~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLD---PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            44567899999999999999999998877   577889999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccc
Q 028517          122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSS  201 (208)
Q Consensus       122 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  201 (208)
                      +..|+.+++++|+..+...+.  ..+.++||.|+..|+.+++++|+++|+|++.+|.+|.||||+|+..|+.+++++|++
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            999999999999988765543  346789999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q 028517          202 NKTWS  206 (208)
Q Consensus       202 ~~~~~  206 (208)
                      +++..
T Consensus       677 ~GAdv  681 (823)
T PLN03192        677 NGADV  681 (823)
T ss_pred             cCCCC
Confidence            87643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.3e-25  Score=171.67  Aligned_cols=167  Identities=18%  Similarity=0.184  Sum_probs=147.3

Q ss_pred             cccccCcHHHHHHHH--cCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccccccc-----
Q 028517            5 IDQTIKDKDLFKAAE--TGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV-----   77 (208)
Q Consensus         5 ~~~~~~~~~l~~a~~--~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~-----   77 (208)
                      ..+...+++||.++.  .|+.+++++|++.+.  +++.  ..+.||+|.|+..++.+++++|++.|...  .+..     
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GA--DIn~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~--~n~~~~~l~  184 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGA--VIYK--IECLNAYFRGICKKESSVVEFILNCGIPD--ENDVKLDLY  184 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCC--CCCC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcc--cccccchhh
Confidence            456778999999999  999999999998874  5544  34589999999999999999999988642  2222     


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh
Q 028517           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST  157 (208)
Q Consensus        78 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~  157 (208)
                      +..+.+++|.|...++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..
T Consensus       185 ~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        185 KIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDR  264 (437)
T ss_pred             hhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            23477899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC--------HHHHHHHHHcCCCCCCCC
Q 028517          158 GN--------SALCELLIEEGAEVDATD  177 (208)
Q Consensus       158 ~~--------~~~~~~Ll~~~~~~~~~~  177 (208)
                      |+        .+++++|+++|++++...
T Consensus       265 g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        265 GSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CCcccccccHHHHHHHHHhCCCCCCchh
Confidence            84        699999999999887644

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.2e-25  Score=182.45  Aligned_cols=196  Identities=16%  Similarity=0.110  Sum_probs=157.7

Q ss_pred             CcccccccCcHHHHHHHHcCChHHH----HHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccccccc
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTF----KSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV   77 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~----~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~   77 (208)
                      +.+..+..+.|||+.|+..|+.+.+    +.|++...  ..+..  ...++++.|+..|+.+++++|++.|++   ++..
T Consensus        60 ~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~--~~n~~--~~~~~~~~a~~~~~~e~vk~Ll~~Gad---in~~  132 (661)
T PHA02917         60 NPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATG--YSNIN--DFNIFSYMKSKNVDVDLIKVLVEHGFD---LSVK  132 (661)
T ss_pred             CccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccC--CCCCC--CcchHHHHHhhcCCHHHHHHHHHcCCC---CCcc
Confidence            4456677889999999999996655    45554331  12222  123677889999999999999999887   6778


Q ss_pred             CCCCCcHHHHH--HhcCCHHHHHHHHhCCCCCCCCCC---CC-----------chHHHHHHH-----------cCCHHHH
Q 028517           78 DEEGWAPIHSA--ASIGNVTIVEMLLSKGADVNLKND---GG-----------RTALHYAAS-----------KGWLKIV  130 (208)
Q Consensus        78 ~~~~~~~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~---~~-----------~~~l~~a~~-----------~~~~~~~  130 (208)
                      +..|.|||+.+  ...|+.+++++|+++|++++.++.   .|           .||+|+|+.           .++.+++
T Consensus       133 d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv  212 (661)
T PHA02917        133 CENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVV  212 (661)
T ss_pred             CCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHH
Confidence            88999999954  457899999999999999976543   23           599999986           4588999


Q ss_pred             HHHHHcCCCCCCCCCCCCcHHHHHHhhCCH--HHHHHHHHcCCCCC----CCCCCCCCHHHHHHHhC---------Cccc
Q 028517          131 ELLISRGAKINSKDKVGCTALHRGASTGNS--ALCELLIEEGAEVD----ATDKAGQTPLMNAVICY---------NKEF  195 (208)
Q Consensus       131 ~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~--~~~~~Ll~~~~~~~----~~~~~g~t~l~~A~~~~---------~~~~  195 (208)
                      ++|+++|++++..|..|.||||+|+..|+.  +++++|++ |++.+    ..+..|.+|+++|+..+         ..++
T Consensus       213 ~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~i  291 (661)
T PHA02917        213 KCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDL  291 (661)
T ss_pred             HHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHH
Confidence            999999999999999999999999999985  79999975 87764    45677889999999522         6789


Q ss_pred             cccccccccc
Q 028517          196 SGCSSSNKTW  205 (208)
Q Consensus       196 ~~~l~~~~~~  205 (208)
                      +++|++.+..
T Consensus       292 v~~Li~~Ga~  301 (661)
T PHA02917        292 VKLFLENGKP  301 (661)
T ss_pred             HHHHHhCCCC
Confidence            9999998864

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=2.3e-26  Score=191.16  Aligned_cols=195  Identities=23%  Similarity=0.208  Sum_probs=145.0

Q ss_pred             CcccccccCcHHHH-HHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcC---CHHHHHHHHhcccccc---c-
Q 028517            2 DMDIDQTIKDKDLF-KAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESAN---V-   73 (208)
Q Consensus         2 ~~~~~~~~~~~~l~-~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~~~~ll~~~~~~~---~-   73 (208)
                      +++..|..|+++|| .|+..++.++++.|++.+.      .+..|.||||.|+..+   ...+++++...+....   . 
T Consensus        44 ~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        44 NINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             CCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            34555667777777 6666677777777765441      4566777777776621   1123333333221100   0 


Q ss_pred             ---ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCC--------------CCCchHHHHHHHcCCHHHHHHHHHc
Q 028517           74 ---VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------DGGRTALHYAASKGWLKIVELLISR  136 (208)
Q Consensus        74 ---~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~ll~~  136 (208)
                         .......|.||||.|+..++.++++.|+++|++++.++              ..|.+|++.|+..++.+++++|+++
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence               01122468999999999999999999999999988653              2588999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHhhC---------CHHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHhCCcccccccc
Q 028517          137 GAKINSKDKVGCTALHRGASTG---------NSALCELLIEEGAEV-------DATDKAGQTPLMNAVICYNKEFSGCSS  200 (208)
Q Consensus       137 ~~~~~~~~~~~~t~l~~A~~~~---------~~~~~~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~l~  200 (208)
                      |++++..|..|+||||.|+..+         ...+.+++++.+++.       +..|.+|.||+++|+..|+.++++.|+
T Consensus       198 gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL  277 (743)
T TIGR00870       198 PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL  277 (743)
T ss_pred             CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHH
Confidence            9999999999999999999886         234566676665544       667999999999999999999999999


Q ss_pred             cc
Q 028517          201 SN  202 (208)
Q Consensus       201 ~~  202 (208)
                      +.
T Consensus       278 ~~  279 (743)
T TIGR00870       278 AI  279 (743)
T ss_pred             HH
Confidence            83

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.9e-25  Score=176.70  Aligned_cols=204  Identities=20%  Similarity=0.160  Sum_probs=165.3

Q ss_pred             cccccccCcHHHHHHHHcC-------ChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcC--CHHHHHHHHhcccc---
Q 028517            3 MDIDQTIKDKDLFKAAETG-------DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDES---   70 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g-------~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~ll~~~~~---   70 (208)
                      +|.++..|.|+||+|+..+       +.|+++.|++.+  .+++..|..|.||||+|+.+.  +.|+++.|+....+   
T Consensus       168 i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g--~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        168 TDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHE--KEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             cccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCC--CCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence            4577888999999999999       899999999877  477788999999999999999  77888888751000   


Q ss_pred             -------------------cc---------------c-------------------------------------------
Q 028517           71 -------------------AN---------------V-------------------------------------------   73 (208)
Q Consensus        71 -------------------~~---------------~-------------------------------------------   73 (208)
                                         .+               +                                           
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                               00               0                                           


Q ss_pred             ------ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCC--chHHHHHHHcCCH---HHHHHHHHcCCCCCC
Q 028517           74 ------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG--RTALHYAASKGWL---KIVELLISRGAKINS  142 (208)
Q Consensus        74 ------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~~l~~a~~~~~~---~~~~~ll~~~~~~~~  142 (208)
                            ..........+++.|+..++.+++++|+++|++++.+|..|  .||+|.|......   +++++++++|++++.
T Consensus       326 ~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~  405 (631)
T PHA02792        326 CMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINK  405 (631)
T ss_pred             HHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccc
Confidence                  00000123456778889999999999999999999888764  6899987776654   457888999999999


Q ss_pred             CCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH---h-------CCccccccccccccccCC
Q 028517          143 KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI---C-------YNKEFSGCSSSNKTWSGC  208 (208)
Q Consensus       143 ~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~---~-------~~~~~~~~l~~~~~~~~~  208 (208)
                      +|..|.||||.|+..++.+++++|+++|++++.++..|.||+++|+.   .       ...++++.|+++++...|
T Consensus       406 kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~~  481 (631)
T PHA02792        406 IDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIEC  481 (631)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChhH
Confidence            99999999999999999999999999999999999999999999976   2       225668888888876543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=8.8e-27  Score=158.56  Aligned_cols=191  Identities=26%  Similarity=0.290  Sum_probs=152.8

Q ss_pred             CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (208)
Q Consensus        10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (208)
                      |-..++.++-+|+.+.+...+.++  ..-+..+--+.+|+.+++..-+++....+.+.     .++..|+.|.|||.+|+
T Consensus        96 g~~~~~v~ap~~s~~k~sttltN~--~rgnevs~~p~s~~slsVhql~L~~~~~~~~n-----~VN~~De~GfTpLiWAa  168 (296)
T KOG0502|consen   96 GWSALLVAAPCGSVDKVSTTLTNG--ARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN-----KVNACDEFGFTPLIWAA  168 (296)
T ss_pred             hhhhhhhcCCCCCcceeeeeeccc--ccCCccccccCChhhHHHHHHHHHHHHHHhhc-----cccCccccCchHhHHHH
Confidence            444444444555444444444433  12222334455666666666666655554431     27888999999999999


Q ss_pred             hcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHc
Q 028517           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (208)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  169 (208)
                      ..|+++++++|++.|++++...+...+.|..|+..|..++++.|+.++.|+|..|-+|-|||-+|++.|+..+++.|++.
T Consensus       169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s  248 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNS  248 (296)
T ss_pred             hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhc
Confidence            99999999999999999999998999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHhCCccccccccccccccCC
Q 028517          170 GAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC  208 (208)
Q Consensus       170 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~  208 (208)
                      |+|++.-+..|++++..|+..|+- +|+-.+++...+.|
T Consensus       249 GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~  286 (296)
T KOG0502|consen  249 GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLC  286 (296)
T ss_pred             CCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHh
Confidence            999999999999999999999998 77777766655544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=9.6e-27  Score=192.67  Aligned_cols=198  Identities=32%  Similarity=0.430  Sum_probs=141.9

Q ss_pred             ccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcC-CHHHHHHHHhcccccccccccCCCCCcH
Q 028517            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG-HPEVVEILLSVDESANVVNAVDEEGWAP   84 (208)
Q Consensus         6 ~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~~~~ll~~~~~~~~~~~~~~~~~~~   84 (208)
                      +...+-++||.|+..++...++.+++.+  .+.+..+..|+||+|.|+..| ..+....+++.+.+   .+.....|.||
T Consensus       403 ~gk~gvTplh~aa~~~~~~~v~l~l~~g--A~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~---~n~~s~~G~T~  477 (1143)
T KOG4177|consen  403 AGKNGVTPLHVAAHYGNPRVVKLLLKRG--ASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGAD---PNAVSKQGFTP  477 (1143)
T ss_pred             CCCCCcceeeehhhccCcceEEEEeccC--CChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCC---cchhccccCcc
Confidence            3334444444444444444444444422  244444555566666666666 55555555554444   44455566666


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 028517           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE  164 (208)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~  164 (208)
                      ||.|...|+.++++.+++.++..+.....+.+++|.+...+...+++.++++|++.+.++..+.||||.||.+|+..+|+
T Consensus       478 Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~Vk  557 (1143)
T KOG4177|consen  478 LHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVK  557 (1143)
T ss_pred             hhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHH
Confidence            66666666666666666666655555566666677666666777777777777888888889999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccccCC
Q 028517          165 LLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC  208 (208)
Q Consensus       165 ~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~  208 (208)
                      +|+++|+|.+.+++.|+||||.|+..|..++++.|.++++..+|
T Consensus       558 fLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  558 FLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             HhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999999999999999999987764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=1.5e-24  Score=148.69  Aligned_cols=142  Identities=23%  Similarity=0.286  Sum_probs=120.4

Q ss_pred             ccCCCCCCchHHHHHHhcCCH----HHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHH---HHHHHHhCCCCCCCC
Q 028517           38 LSLRNDDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT---IVEMLLSKGADVNLK  110 (208)
Q Consensus        38 ~~~~~~~g~t~L~~A~~~g~~----~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~Ll~~~~~~~~~  110 (208)
                      ....+..+.++||.||..|+.    +++++|.+.+..   ++..+..|.||||+|+..|+.+   ++++|+++|++++.+
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~---~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~   89 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL---LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAR   89 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh---hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCC
Confidence            334566788899999999998    455566655443   5677888999999999988765   488999999999998


Q ss_pred             C-CCCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCC
Q 028517          111 N-DGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQT  182 (208)
Q Consensus       111 ~-~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t  182 (208)
                      + ..|.||||+|+..++.+++++|+. .|++++..+..|.||||+|+..++.+++++|+++|++.+.++..|.+
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            8 589999999999999999999995 79999999999999999999999999999999999999998877754

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=9.2e-25  Score=171.44  Aligned_cols=197  Identities=26%  Similarity=0.310  Sum_probs=172.9

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      ..+.+|.++.+.||+|+..|+.++++.|++...  .....+..|.+|||+|++.|+.++++.++..+..   .+..+..|
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea--~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~---~na~~~e~  115 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA--LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI---LNAVNIEN  115 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchh--hhhhhhccCcceEEehhhcCcchHHHHHHhcccC---CCcccccC
Confidence            356788999999999999999999999998663  3444568899999999999999999999987633   67777899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCC--------CCCCCCCCcHHHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI--------NSKDKVGCTALHR  153 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~--------~~~~~~~~t~l~~  153 (208)
                      .||||.|++.|+.+++.+|+++++++-.++..+.|++..|++.|..++++.|++...+.        ..++..+.+|||+
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHl  195 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHL  195 (854)
T ss_pred             cCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcch
Confidence            99999999999999999999999999999999999999999999999999998763221        2344567889999


Q ss_pred             HHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       154 A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      |.++|+.++++.|++.|.|++..... .|+||.|+.+|..++|+.|+.-+.
T Consensus       196 aakngh~~~~~~ll~ag~din~~t~~-gtalheaalcgk~evvr~ll~~gi  245 (854)
T KOG0507|consen  196 AAKNGHVECMQALLEAGFDINYTTED-GTALHEAALCGKAEVVRFLLEIGI  245 (854)
T ss_pred             hhhcchHHHHHHHHhcCCCccccccc-chhhhhHhhcCcchhhhHHHhhcc
Confidence            99999999999999999999887764 479999999999999999987553

>PHA02741 hypothetical protein; Provisional

Probab=99.92  E-value=3.2e-24  Score=147.73  Aligned_cols=134  Identities=25%  Similarity=0.344  Sum_probs=88.4

Q ss_pred             hccCCCCCCchHHHHHHhcCCHHHHHHHHhcc---cccccccccCCCCCcHHHHHHhcCC----HHHHHHHHhCCCCCCC
Q 028517           37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSVD---ESANVVNAVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNL  109 (208)
Q Consensus        37 ~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~---~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~~~~~  109 (208)
                      .+..++..|.||||+|+..|+.++++.|+...   .....++..+..|.||||.|+..++    .+++++|++.|++++.
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~   92 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA   92 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC
Confidence            34455667777777777777777777764321   0111245566667777777777766    4666777777777766


Q ss_pred             CCC-CCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC
Q 028517          110 KND-GGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGCTALHRGASTGNSALCELLIEEG  170 (208)
Q Consensus       110 ~~~-~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~  170 (208)
                      ++. .|.||||+|+..++.+++++|+. .|++++..+..|.|||+.|+..++.+++++|++.+
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            664 67777777777777777777775 36676666677777777777777777777776654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=3.3e-24  Score=147.06  Aligned_cols=132  Identities=24%  Similarity=0.295  Sum_probs=118.6

Q ss_pred             cccCCCCCcHHHHHHhcCCH----HHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHH---HHHHHHHcCCCCCCCC-CC
Q 028517           75 NAVDEEGWAPIHSAASIGNV----TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK---IVELLISRGAKINSKD-KV  146 (208)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~ll~~~~~~~~~~-~~  146 (208)
                      +..+..+.++||.|++.|+.    +++++|++.+..++.+|..|.||+|+|+..++.+   ++++|+++|++++.++ ..
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~   93 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGT   93 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34556778899999999998    6666788899999989999999999999998765   4899999999999998 48


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          147 GCTALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       147 ~~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |.||||+|+..++.+++++|+. .|++++.++..|.||+|+|+..++.+++++|+++++..
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  154 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC  154 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999995 79999999999999999999999999999999987654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=6.1e-24  Score=176.72  Aligned_cols=177  Identities=25%  Similarity=0.283  Sum_probs=147.4

Q ss_pred             ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHH-HHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLH-VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (208)
                      ...+..++.|++.|+.+.++.+++...+.+.+..|..|+|||| .|+..++.++++.|++.+.       .+..|.||||
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-------~~~~G~T~Lh   87 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-------RGAVGDTLLH   87 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-------CCCcChHHHH
Confidence            3457899999999999999999987444677788899999999 8889999999999997654       4568999999


Q ss_pred             HHHhc---CCHHHHHHHHhCCCCC----------CCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC---------
Q 028517           87 SAASI---GNVTIVEMLLSKGADV----------NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD---------  144 (208)
Q Consensus        87 ~a~~~---~~~~~~~~Ll~~~~~~----------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~---------  144 (208)
                      .|+..   +...++..+...+...          ......|.||||+|+..|+.++++.|+++|++++..+         
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~  167 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQ  167 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCC
Confidence            99873   2234445555544221          1123469999999999999999999999999988643         


Q ss_pred             -----CCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 028517          145 -----KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY  191 (208)
Q Consensus       145 -----~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  191 (208)
                           ..|.|||+.|+..|+.+++++|+++|+|++..|..|.||+|+|+..+
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence                 25889999999999999999999999999999999999999999986

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.91  E-value=9.4e-24  Score=167.15  Aligned_cols=202  Identities=13%  Similarity=0.063  Sum_probs=162.7

Q ss_pred             CcccccccCcHHHHHHHH-cCChHHHHHHHHHhhhh----------------------------------hccCCCCCCc
Q 028517            2 DMDIDQTIKDKDLFKAAE-TGDSSTFKSLSKQQLLK----------------------------------SLSLRNDDDR   46 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~-~g~~~~~~~l~~~~~~~----------------------------------~~~~~~~~g~   46 (208)
                      |++..+..+.+++++|+. .++.|++++|++.+...                                  ..+..+..|.
T Consensus        97 dvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~  176 (631)
T PHA02792         97 EINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGK  176 (631)
T ss_pred             CcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCC
Confidence            455566678888899966 69999999999876310                                  1124566799


Q ss_pred             hHHHHHHhcC-------CHHHHHHHHhcccccccccccCCCCCcHHHHHHhcC--CHHHHHHHHhCCCC-----------
Q 028517           47 TLLHVAASCG-------HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG--NVTIVEMLLSKGAD-----------  106 (208)
Q Consensus        47 t~L~~A~~~g-------~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~-----------  106 (208)
                      ||||+|+.++       +.|+++.|++.|+.   ++..+..|.||||.|+...  ..++++.|++..-.           
T Consensus       177 t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~---~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y  253 (631)
T PHA02792        177 TVLYYYIITRSQDGYATSLDVINYLISHEKE---MRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNY  253 (631)
T ss_pred             chHHHHHhhCCcccccCCHHHHHHHHhCCCC---cCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHH
Confidence            9999999999       89999999998877   6778889999999999988  78888888874221           


Q ss_pred             ------------------------------------------------------------------------------CC
Q 028517          107 ------------------------------------------------------------------------------VN  108 (208)
Q Consensus       107 ------------------------------------------------------------------------------~~  108 (208)
                                                                                                    .+
T Consensus       254 ~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~  333 (631)
T PHA02792        254 LRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGAT  333 (631)
T ss_pred             HHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCc
Confidence                                                                                          00


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CcHHHHHHhhCCH---HHHHHHHHcCCCCCCCCCCCCCH
Q 028517          109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG--CTALHRGASTGNS---ALCELLIEEGAEVDATDKAGQTP  183 (208)
Q Consensus       109 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~--~t~l~~A~~~~~~---~~~~~Ll~~~~~~~~~~~~g~t~  183 (208)
                      .-.......++.|+..++.+++++|+++|++++.+|..|  .||||.|......   +++++|+++|+|++.+|..|.||
T Consensus       334 ~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TP  413 (631)
T PHA02792        334 LYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSI  413 (631)
T ss_pred             cccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcch
Confidence            000112456777888999999999999999999888765  6899988776654   46888999999999999999999


Q ss_pred             HHHHHHhCCcccccccccccccc
Q 028517          184 LMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       184 l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      ||+|+..++.+++++|+++++..
T Consensus       414 Lh~Aa~~~n~eivelLLs~GADI  436 (631)
T PHA02792        414 LYYCIESHSVSLVEWLIDNGADI  436 (631)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999999999999999988754

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=3.3e-23  Score=142.68  Aligned_cols=130  Identities=26%  Similarity=0.327  Sum_probs=115.1

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHh------CCCCCCCCCCCCchHHHHHHHcCC----HHHHHHHHHcCCCCCCC
Q 028517           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLS------KGADVNLKNDGGRTALHYAASKGW----LKIVELLISRGAKINSK  143 (208)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~------~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~  143 (208)
                      ++..+..|.||||.|++.|+.++++.|+.      .|.+++.+|..|.||||+|+..++    .+++++|+++|++++.+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            34556789999999999999999998854      357788889999999999999998    58889999999999988


Q ss_pred             CC-CCCcHHHHHHhhCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517          144 DK-VGCTALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK  203 (208)
Q Consensus       144 ~~-~~~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  203 (208)
                      +. .|.||||+|+..++.+++++|+. .|++++..|.+|.|||++|+..++.+++++|.+..
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            85 89999999999999999999997 59999999999999999999999999999998753

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=3.3e-24  Score=155.87  Aligned_cols=181  Identities=30%  Similarity=0.387  Sum_probs=152.3

Q ss_pred             CChHHHHHHHHHhh-------hhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhc--
Q 028517           21 GDSSTFKSLSKQQL-------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI--   91 (208)
Q Consensus        21 g~~~~~~~l~~~~~-------~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~--   91 (208)
                      -+.+.|...+..+.       .-..+..|.+|+|+||||..++++++++.|++.+-.  .+...+..|+||++.++..  
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC--~VD~qNrAGYtpiMLaALA~l  314 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVC--DVDQQNRAGYTPVMLAALAKL  314 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcc--cccccccccccHHHHHHHHhh
Confidence            35566666665442       224567799999999999999999999999986654  3888899999999987543  


Q ss_pred             ---CCHHHHHHHHhCCCCCCCCCC-CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517           92 ---GNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI  167 (208)
Q Consensus        92 ---~~~~~~~~Ll~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll  167 (208)
                         ...+++..|.+.| +++.+-. .|.|.|++|+..|+.++++.|+..|+|+|.+|.+|.|+|+.|+.+|+.|+++.|+
T Consensus       315 k~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLL  393 (452)
T KOG0514|consen  315 KQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLL  393 (452)
T ss_pred             cchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHh
Confidence               4677888888875 3444433 7999999999999999999999999999999999999999999999999999999


Q ss_pred             Hc-CCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          168 EE-GAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       168 ~~-~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      .. +.|..+.|.+|.|+|.+|...|+.||--.|+.+-.
T Consensus       394 A~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n  431 (452)
T KOG0514|consen  394 AVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHMN  431 (452)
T ss_pred             ccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHHH
Confidence            77 78999999999999999999999999888877543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.4e-23  Score=153.36  Aligned_cols=158  Identities=19%  Similarity=0.187  Sum_probs=129.7

Q ss_pred             cCCCCCCch-HHHHHHhcCCHHHHHHHHhcccccccccc-cCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCC-CCCCc
Q 028517           39 SLRNDDDRT-LLHVAASCGHPEVVEILLSVDESANVVNA-VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGR  115 (208)
Q Consensus        39 ~~~~~~g~t-~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~~  115 (208)
                      ..+|..+.| +||.|+..|+.+++++|++.|+++..... .+..|.||||.|+..++.+++++|+++|++++.+ +..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            345555554 67777888999999999999987532211 2458999999999999999999999999999986 45799


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccc
Q 028517          116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF  195 (208)
Q Consensus       116 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  195 (208)
                      ||+|.|+..++.+++++|+.+|++++.++..|.||++.|+..++.+++..+...     ..+..+.+|.+++   ++.|+
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~n~ei  177 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN-----EISNFYKHPKKIL---INFDI  177 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC-----cccccccChhhhh---ccHHH
Confidence            999999999999999999999999999999999999999998888887666532     2355677888875   47889


Q ss_pred             ccccccccc
Q 028517          196 SGCSSSNKT  204 (208)
Q Consensus       196 ~~~l~~~~~  204 (208)
                      ++.|+++..
T Consensus       178 ~~~Lish~v  186 (300)
T PHA02884        178 LKILVSHFI  186 (300)
T ss_pred             HHHHHHHHH
Confidence            999988765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.91  E-value=2.1e-23  Score=141.76  Aligned_cols=138  Identities=19%  Similarity=0.212  Sum_probs=107.4

Q ss_pred             hccCCCCCCchHHHHHHhcCCHHHHHHHHhc--ccccccccccCCCCCcHHHHHHhcCCH---HHHHHHHhCCCCCCCCC
Q 028517           37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSV--DESANVVNAVDEEGWAPIHSAASIGNV---TIVEMLLSKGADVNLKN  111 (208)
Q Consensus        37 ~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~--~~~~~~~~~~~~~~~~~l~~a~~~~~~---~~~~~Ll~~~~~~~~~~  111 (208)
                      .....+..|.||||+|+..|+.+.+......  ...+......+..|.||||+|+..++.   +++++|++.|++++.++
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            3445678899999999999984322211111  111222345677899999999998876   46888999999998887


Q ss_pred             -CCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCC
Q 028517          112 -DGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD  174 (208)
Q Consensus       112 -~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~  174 (208)
                       ..|.||||+|+..++.+++++|+.+ |++++..+..|.|||++|+..|+.+++++|+++|++.+
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence             4899999999999999999999874 88888888899999999999999999999999888764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=8.5e-25  Score=148.93  Aligned_cols=193  Identities=24%  Similarity=0.332  Sum_probs=168.2

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (208)
                      +..++..+-.+.+.|+.++......-.. ..+...+..|.++++.++-+|+.+..+..+..++.   .+..+..+.+|+.
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~-~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r---gnevs~~p~s~~s  134 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDP-DAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR---GNEVSLMPWSPLS  134 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCC-CCCCCCCchhhhhhhhcCCCCCcceeeeeeccccc---CCccccccCChhh
Confidence            4456777788899999999888865442 23334466799999999999999999999877766   4566678899999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      +++-.-+.+....+.+.  .++..|..|.|||.||+..|++.++++|++.|++++...+...++|.+|++.|..++|++|
T Consensus       135 lsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lL  212 (296)
T KOG0502|consen  135 LSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELL  212 (296)
T ss_pred             HHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHH
Confidence            99988888888777766  5677899999999999999999999999999999999989999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          167 IEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       167 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      ++.+.|++..|.+|.|||-||++.++.++++.|+..++.
T Consensus       213 L~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd  251 (296)
T KOG0502|consen  213 LTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGAD  251 (296)
T ss_pred             HhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999988764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=2.4e-23  Score=151.41  Aligned_cols=163  Identities=27%  Similarity=0.359  Sum_probs=146.2

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhc-----CCHHHHHHHHhccccccccccc
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC-----GHPEVVEILLSVDESANVVNAV   77 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~~~~ll~~~~~~~~~~~~   77 (208)
                      +++.|..|+|+||||+.-+|+++|+.|++.+ ..+....+.-|+||+++++..     .+.+++..|+..|.-   ..+.
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV---NaKA  336 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV---NAKA  336 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc---chhh
Confidence            4778999999999999999999999999998 678888899999999999853     467888889876642   3344


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHh
Q 028517           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGAS  156 (208)
Q Consensus        78 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~A~~  156 (208)
                      ...|+|+|+.|++.|+.++++.|+..|++++.+|.+|.|.|++|+..|+.+++++|+.. +++...+|.+|.|+|..|..
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHh
Confidence            56899999999999999999999999999999999999999999999999999999966 78899999999999999999


Q ss_pred             hCCHHHHHHHHHc
Q 028517          157 TGNSALCELLIEE  169 (208)
Q Consensus       157 ~~~~~~~~~Ll~~  169 (208)
                      .|+.||.-+|..+
T Consensus       417 agh~eIa~mlYa~  429 (452)
T KOG0514|consen  417 AGHREIAVMLYAH  429 (452)
T ss_pred             cCchHHHHHHHHH
Confidence            9999998777654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=3.2e-23  Score=162.90  Aligned_cols=195  Identities=26%  Similarity=0.272  Sum_probs=171.3

Q ss_pred             CcHHHHHHHHcCChHHHHHHHHHhh-----------hhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccC
Q 028517           10 KDKDLFKAAETGDSSTFKSLSKQQL-----------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD   78 (208)
Q Consensus        10 ~~~~l~~a~~~g~~~~~~~l~~~~~-----------~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~   78 (208)
                      ....+..|++.|+++.+..+++...           ..+.+..|.+|.|.||.|+..|+.++.+.|++..+.   +...+
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~---ldl~d   79 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL---LDLCD   79 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh---hhhhh
Confidence            4567899999999999999997432           234456788999999999999999999999987665   44455


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 028517           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (208)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~  158 (208)
                      ..|.+|||+|++.|+.++++.++.++..++..+..|.+|+|.+++.++.+++++|+.+|++.-..++.+.|++.+|++.|
T Consensus        80 ~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   80 TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFG  159 (854)
T ss_pred             ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhh
Confidence            78999999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCC--------CCCCCCCCCCHHHHHHHhCCccccccccccccccC
Q 028517          159 NSALCELLIEEGAE--------VDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSG  207 (208)
Q Consensus       159 ~~~~~~~Ll~~~~~--------~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  207 (208)
                      ..++++.|++....        -..++..+-+|+|.|+.+|+.++++.|++.+..+|
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din  216 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDIN  216 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcc
Confidence            99999999976221        12345578889999999999999999999887654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=4.2e-23  Score=140.26  Aligned_cols=133  Identities=24%  Similarity=0.257  Sum_probs=111.4

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCC-----CCCCCCCCchHHHHHHHcCCHH---HHHHHHHcCCCCCCCCC
Q 028517           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD-----VNLKNDGGRTALHYAASKGWLK---IVELLISRGAKINSKDK  145 (208)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~~~l~~a~~~~~~~---~~~~ll~~~~~~~~~~~  145 (208)
                      .+..+..|.||||+|++.|+.+.+........+     ...+|..|.||||+|+..+..+   ++++|+++|++++.++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            566678899999999999984322211111111     2345789999999999999864   68899999999999884


Q ss_pred             -CCCcHHHHHHhhCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          146 -VGCTALHRGASTGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       146 -~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                       .|.||||+|+..++.+++++|+.+ |++++.++..|.||+++|+..|+.+++++|+++++..
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence             899999999999999999999984 9999999999999999999999999999999988754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=4.4e-22  Score=130.98  Aligned_cols=144  Identities=31%  Similarity=0.329  Sum_probs=128.8

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q 028517           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (208)
Q Consensus        47 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  126 (208)
                      -.+..|+..+....++.|++..+  ..++.+|..++||||.|+.+|+.++++.|+..|++++.+...|+||||.||..++
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~a--n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKA--NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcc--ccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            34678888899999999998544  4589999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC-HHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhCC
Q 028517          127 LKIVELLISRGAKINSKDKVGCTALHRGASTGN-SALCELLIE-EGAEVDATDKAGQTPLMNAVICYN  192 (208)
Q Consensus       127 ~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~-~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~  192 (208)
                      .+++..|+++|+|++.......||||+|+...+ ...+++|+. .++++-..+..+.||+++|-+.+-
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            999999999999999998889999999998765 456677764 589999999999999999998754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=5.6e-22  Score=146.20  Aligned_cols=126  Identities=21%  Similarity=0.206  Sum_probs=112.5

Q ss_pred             cccCCCCC-cHHHHHHhcCCHHHHHHHHhCCCCCCCCC----CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCC
Q 028517           75 NAVDEEGW-APIHSAASIGNVTIVEMLLSKGADVNLKN----DGGRTALHYAASKGWLKIVELLISRGAKINSK-DKVGC  148 (208)
Q Consensus        75 ~~~~~~~~-~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~  148 (208)
                      ..++..+. ++|+.|+..++.+++++|+++|++++.++    ..|.||+|+|+..++.+++++|+++|++++.. +..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            34455555 56778888899999999999999999874    58999999999999999999999999999986 46799


Q ss_pred             cHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517          149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS  200 (208)
Q Consensus       149 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  200 (208)
                      ||||.|+..++.+++++|+.+|++++.++..|.||+++|++.++.+++..+.
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            9999999999999999999999999999999999999999998888765543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=3.1e-22  Score=152.04  Aligned_cols=186  Identities=31%  Similarity=0.427  Sum_probs=114.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcC
Q 028517           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (208)
Q Consensus        13 ~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~   92 (208)
                      .+..|++.|+++-+..|+..+  ..++..+.+|.|+||-+|.-.+.++++++++.+++   ++..+..++||+|.|+..|
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~g--a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~---Vn~~d~e~wtPlhaaascg  117 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRG--ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN---VNAQDNEGWTPLHAAASCG  117 (527)
T ss_pred             HHHhccccccHHHHHHHhccC--CCccccCCccchhHHHHHhcccHHHHHHHHHhcCC---ccccccccCCcchhhcccc
Confidence            456677777777777776554  34466677777777777777777777777777666   6667777777777777777


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCchHHHHHHH--------------cCCH-------------HHHHHHHHcCCCCCCCCC
Q 028517           93 NVTIVEMLLSKGADVNLKNDGGRTALHYAAS--------------KGWL-------------KIVELLISRGAKINSKDK  145 (208)
Q Consensus        93 ~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~--------------~~~~-------------~~~~~ll~~~~~~~~~~~  145 (208)
                      +..++.+|+.+|+++...+..|..|...+.-              .-.+             ++-+|+ ..|.+.+..+.
T Consensus       118 ~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l-~~G~~~d~~~~  196 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWL-NAGAELDARHA  196 (527)
T ss_pred             cHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHH-hcccccccccc
Confidence            7777777777776655555544433322110              0000             011122 24444444544


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       146 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      .|-|.||.|..+|..++.++|++.|.+++.+|.+|+||||.|+.=|..++.++|++++.
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga  255 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA  255 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhc
Confidence            56666666666666666666666666666666666666666666666666666666554

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.86  E-value=3.8e-21  Score=152.64  Aligned_cols=196  Identities=30%  Similarity=0.343  Sum_probs=165.2

Q ss_pred             cccccCcHHHHHHHHcCChHHHHHHHHHhh-------hhhccCCCCCCchHHHHHHhc---CCHHHHHHHHhcccccccc
Q 028517            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQL-------LKSLSLRNDDDRTLLHVAASC---GHPEVVEILLSVDESANVV   74 (208)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~-------~~~~~~~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~~   74 (208)
                      +.+...+.++..|...+..+.+..++....       ..+++.+-.-|.|.||.|.-.   ++.++++.|++..+.  .+
T Consensus        96 ~l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~--li  173 (782)
T KOG3676|consen   96 ILKRFDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPK--LI  173 (782)
T ss_pred             hhhhcchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHH--Hh
Confidence            344555688999999999999988876442       134455567899999999873   455889999875542  22


Q ss_pred             cc----cCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCC---------CC--------------CCchHHHHHHHcCCH
Q 028517           75 NA----VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK---------ND--------------GGRTALHYAASKGWL  127 (208)
Q Consensus        75 ~~----~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~---------~~--------------~~~~~l~~a~~~~~~  127 (208)
                      +.    ....|.||||.|+.+.+.+++++|++.|++++.+         |.              .|..||..|+..++.
T Consensus       174 nd~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~  253 (782)
T KOG3676|consen  174 NDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQP  253 (782)
T ss_pred             hhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCH
Confidence            22    2346999999999999999999999999997644         11              367899999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517          128 KIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE--VDATDKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       128 ~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      +++++|+++|+|++.+|+.|+|.||..+..-..+|..+++++|++  ...+|.+|.|||..|+..|+.+|.+.+++.
T Consensus       254 eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  254 EIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999  899999999999999999999999999887

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=2.9e-20  Score=122.46  Aligned_cols=145  Identities=32%  Similarity=0.411  Sum_probs=128.1

Q ss_pred             cHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHh
Q 028517           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (208)
Q Consensus        11 ~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (208)
                      ...+..|+..|.+..|+.|++.. ..-.+.+|.+|+||||.|+.+|++++++.|+..+++   ...+...|+||||.||.
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~-an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn---~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEK-ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN---KEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhc-cccccccccccccHHHHHHhcCchHHHHHHHHccCC---cccccccCccchhhhhc
Confidence            45678899999999999999887 577889999999999999999999999999999888   56677899999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHH-HHHHHH-HcCCCCCCCCCCCCcHHHHHHhhCC
Q 028517           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK-IVELLI-SRGAKINSKDKVGCTALHRGASTGN  159 (208)
Q Consensus        91 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~ll-~~~~~~~~~~~~~~t~l~~A~~~~~  159 (208)
                      -.+.+++-+|+++|++++.......||||+++...+.. .+.+|+ ..++.+-.....+.||+..|-+.+-
T Consensus       140 WnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             ccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            99999999999999999999999999999999877654 456655 4577777788889999999988764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.85  E-value=4.8e-20  Score=120.60  Aligned_cols=122  Identities=46%  Similarity=0.688  Sum_probs=85.3

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 028517           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (208)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~  158 (208)
                      ..|.|||+.|+..++.+++++|++.+.....++..|.+|++.|+..+..+++++|++.+..++..+..+.||+|.|+..+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            45667777777777777777777766665666667777777777777777777777776666666666777777777777


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517          159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS  200 (208)
Q Consensus       159 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  200 (208)
                      +.+++++|++++.+.+..+..|.||+++|...++.+++++|+
T Consensus        85 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          85 NLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            777777777777666666777777777777777777666653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=2.5e-20  Score=114.95  Aligned_cols=89  Identities=55%  Similarity=0.836  Sum_probs=69.0

Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 028517           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE  164 (208)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~  164 (208)
                      ||.|++.|+.+++++|++.+.+++.    |.||+|+|+..|+.+++++|+++|++++.++.+|.||||.|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            5778888888888888887766655    677888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCCCCCCC
Q 028517          165 LLIEEGAEVDATD  177 (208)
Q Consensus       165 ~Ll~~~~~~~~~~  177 (208)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            8888888877654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.83  E-value=7.5e-19  Score=114.88  Aligned_cols=124  Identities=48%  Similarity=0.748  Sum_probs=110.3

Q ss_pred             CCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 028517           41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (208)
Q Consensus        41 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  120 (208)
                      .+..|.||||.|+..++.+++++|+..+..   ....+..|.+|++.|+..++.+++++|++.+...+..+..+.+|+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~---~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD---VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            456789999999999999999999987765   35667789999999999999999999999998888888889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517          121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI  167 (208)
Q Consensus       121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll  167 (208)
                      |+..++.+++++|++++.+.+..+..+.||++.|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999888888889999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=7.6e-20  Score=139.18  Aligned_cols=154  Identities=30%  Similarity=0.362  Sum_probs=129.5

Q ss_pred             HHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCH
Q 028517           48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL  127 (208)
Q Consensus        48 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~  127 (208)
                      .+.-||..|..+=++.|+..+..   .+..+.+|.|+||.+|...+.+|+++|+++|+.++..|..++||+|.|+..|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~---~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGAS---PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCC---ccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccH
Confidence            47788999999999999988866   477788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC--------------HH------------HHHHHHHcCCCCCCCCCCCC
Q 028517          128 KIVELLISRGAKINSKDKVGCTALHRGASTGN--------------SA------------LCELLIEEGAEVDATDKAGQ  181 (208)
Q Consensus       128 ~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~--------------~~------------~~~~Ll~~~~~~~~~~~~g~  181 (208)
                      .++.+|+++|+++...+..|..|...+.-.-.              .+            -++..+..|.+.+.++..|-
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~  199 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGA  199 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccc
Confidence            99999999999887777777666554331111              11            12222336888899998899


Q ss_pred             CHHHHHHHhCCcccccccccccc
Q 028517          182 TPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       182 t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      |++|+|+.+|..++.++|++.+.
T Consensus       200 T~lHvAaa~Gy~e~~~lLl~ag~  222 (527)
T KOG0505|consen  200 TALHVAAANGYTEVAALLLQAGY  222 (527)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhcc
Confidence            99999999999999999998764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.81  E-value=5.9e-19  Score=108.77  Aligned_cols=88  Identities=45%  Similarity=0.724  Sum_probs=57.9

Q ss_pred             HHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHH
Q 028517           49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK  128 (208)
Q Consensus        49 L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  128 (208)
                      ||.|+..|+.+++++|++.+.+.   +.    |.||||+|+..|+.+++++|+++|++++.++..|.||+|+|+..++.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~---~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI---NL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT---TS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC---CC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            56677777777777777644332   11    566777777777777777777777777776667777777777777777


Q ss_pred             HHHHHHHcCCCCCCC
Q 028517          129 IVELLISRGAKINSK  143 (208)
Q Consensus       129 ~~~~ll~~~~~~~~~  143 (208)
                      ++++|+++|++++.+
T Consensus        74 ~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   74 IVKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHHTTT-TTSS
T ss_pred             HHHHHHHcCCCCCCc
Confidence            777777777666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=1.3e-19  Score=128.85  Aligned_cols=137  Identities=37%  Similarity=0.483  Sum_probs=121.9

Q ss_pred             HHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCC
Q 028517           14 LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN   93 (208)
Q Consensus        14 l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~   93 (208)
                      ++.-++.|+.-.|+..++.. ..+.+.-|+.|.+|||.||+.|+..+++.|+..|+.   ++..+....||||.|+..|+
T Consensus         4 if~wcregna~qvrlwld~t-ehdln~gddhgfsplhwaakegh~aivemll~rgar---vn~tnmgddtplhlaaahgh   79 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDT-EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR---VNSTNMGDDTPLHLAAAHGH   79 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCc-ccccccccccCcchhhhhhhcccHHHHHHHHhcccc---cccccCCCCcchhhhhhccc
Confidence            45567788888888888766 578888899999999999999999999999988876   66677777899999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 028517           94 VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG  154 (208)
Q Consensus        94 ~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A  154 (208)
                      .++++.|++..++++..+..|+||+|+||..|.-.+.+-|+..|+.++.-++.|.||+..|
T Consensus        80 rdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   80 RDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            9999999999999999999999999999999999999999999999998999999999865

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=9.6e-20  Score=129.42  Aligned_cols=115  Identities=45%  Similarity=0.615  Sum_probs=110.4

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 028517           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHR  153 (208)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~  153 (208)
                      ++..|-.|.+|||+|++.|+..+++.|+.+|+.++..+....||+|.|+..|+.++++.|+++.+|+|..+..|+||||+
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhy  106 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHY  106 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhh
Confidence            67778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 028517          154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV  188 (208)
Q Consensus       154 A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  188 (208)
                      ||+-|+..+.+-|+..|+.+++-|.+|.||+..|.
T Consensus       107 acfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  107 ACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            99999999999999999999999999999998764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=4.1e-18  Score=135.64  Aligned_cols=168  Identities=22%  Similarity=0.261  Sum_probs=141.0

Q ss_pred             CcccccccCcHHHHHHHH---cCChHHHHHHHHHhhh--hhcc-CCCCCCchHHHHHHhcCCHHHHHHHHhccccccc--
Q 028517            2 DMDIDQTIKDKDLFKAAE---TGDSSTFKSLSKQQLL--KSLS-LRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--   73 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~---~g~~~~~~~l~~~~~~--~~~~-~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~--   73 (208)
                      +++.+..-|+|.||.|..   .+.-+++..|++-.++  +++. .....|.||||+|+.+.+.+++++|++.|++...  
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa  214 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARA  214 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHh
Confidence            355567789999999997   3444888888876532  2222 2346899999999999999999999998876211  


Q ss_pred             ----cccc--------------CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHH
Q 028517           74 ----VNAV--------------DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS  135 (208)
Q Consensus        74 ----~~~~--------------~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  135 (208)
                          ....              -..|..||..|+..++.+++++|+++|++++.+|..|+|.||..+..-..+|..++++
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~  294 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALE  294 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHh
Confidence                0001              1247889999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC--CCCCCCCCCcHHHHHHhhCCHHHHHHHHHc
Q 028517          136 RGAK--INSKDKVGCTALHRGASTGNSALCELLIEE  169 (208)
Q Consensus       136 ~~~~--~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  169 (208)
                      +|+.  ....+..|-|||.+|++.|..++++.+++.
T Consensus       295 ~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  295 LGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999  778899999999999999999999999987

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.78  E-value=5.4e-19  Score=144.53  Aligned_cols=198  Identities=24%  Similarity=0.289  Sum_probs=131.0

Q ss_pred             ccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHH
Q 028517            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (208)
Q Consensus         6 ~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l   85 (208)
                      +|..+..++..|+-.|+...|+.|+......+ ...|..+.|+|.+||..|+.++++.|+..+...   ..++...+|||
T Consensus       786 rdkkgf~plImaatagh~tvV~~llk~ha~ve-aQsdrtkdt~lSlacsggr~~vvelLl~~gank---ehrnvsDytPl  861 (2131)
T KOG4369|consen  786 RDKKGFVPLIMAATAGHITVVQDLLKAHADVE-AQSDRTKDTMLSLACSGGRTRVVELLLNAGANK---EHRNVSDYTPL  861 (2131)
T ss_pred             cccccchhhhhhcccCchHHHHHHHhhhhhhh-hhcccccCceEEEecCCCcchHHHHHHHhhccc---cccchhhcCch
Confidence            44455556666666666666666554442111 123455566666666666666666666555542   23344556666


Q ss_pred             HHHHhcCCHHHHHHHHhCCCCCCCCCC--CCchHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHhhCCHHH
Q 028517           86 HSAASIGNVTIVEMLLSKGADVNLKND--GGRTALHYAASKGWLKIVELLISRGAKINSK-DKVGCTALHRGASTGNSAL  162 (208)
Q Consensus        86 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~--~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~t~l~~A~~~~~~~~  162 (208)
                      ..|...|.+++++.|+.+|.+++.+..  .|..||..|..+|+......|++.|.|+|.. ..+.+|+|-+|+..|..|+
T Consensus       862 sla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~ev  941 (2131)
T KOG4369|consen  862 SLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEV  941 (2131)
T ss_pred             hhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchH
Confidence            666666667777777776666665533  4666777777777777777777777776643 3456778888888888888


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccccC
Q 028517          163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSG  207 (208)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  207 (208)
                      +..||.+.++...+...|.|||+-++..|..|+=+.|+..++..|
T Consensus       942 v~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~n  986 (2131)
T KOG4369|consen  942 VFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTN  986 (2131)
T ss_pred             HHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccc
Confidence            888888888888888888888888888888888888888776543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.74  E-value=1.6e-18  Score=141.77  Aligned_cols=192  Identities=26%  Similarity=0.306  Sum_probs=173.3

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (208)
                      .-+++|..|+..|+-|.+..|+..+  .+.+.+|..|.+||.+|+..||..+++.|+......  ....|+.+.|+|.+|
T Consensus       756 n~~t~LT~acaggh~e~vellv~rg--aniehrdkkgf~plImaatagh~tvV~~llk~ha~v--eaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRG--ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV--EAQSDRTKDTMLSLA  831 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhc--ccccccccccchhhhhhcccCchHHHHHHHhhhhhh--hhhcccccCceEEEe
Confidence            3478999999999999999999876  588889999999999999999999999999865553  566788999999999


Q ss_pred             HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCcHHHHHHhhCCHHHHHHH
Q 028517           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK--DKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~--~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      |..|+.+++..|+..|++...++-..+||+.+|...|..+++..|+..|..++.+  .+-|..||.+|..+|+.+.++.|
T Consensus       832 csggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             cCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHH
Confidence            9999999999999999998888999999999999999999999999999888866  45689999999999999999999


Q ss_pred             HHcCCCCCCCC-CCCCCHHHHHHHhCCcccccccccccc
Q 028517          167 IEEGAEVDATD-KAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       167 l~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      ++.|.|++..- .+-.|+|.+|+..|+.|++..|+...+
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~a  950 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQA  950 (2131)
T ss_pred             hcccchhccccccccccceeeccccCcchHHHHHHHHhh
Confidence            99999997653 467899999999999999999987543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.74  E-value=2.2e-17  Score=97.63  Aligned_cols=104  Identities=35%  Similarity=0.486  Sum_probs=91.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHH
Q 028517           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC  163 (208)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~  163 (208)
                      .+.+++++|.++-++..+..|.+++..- .|.+|+|+|+-.|..+++++|+..|++++.+|+.|.|||..|++.|+..+|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4678899999999999999887776533 789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHH
Q 028517          164 ELLIEEGAEVDATDKAGQTPLMNAV  188 (208)
Q Consensus       164 ~~Ll~~~~~~~~~~~~g~t~l~~A~  188 (208)
                      ++|+++|+|-.....+|.+.+..+-
T Consensus        84 klLL~~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhhcc
Confidence            9999999999988888988776553

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.71  E-value=4e-17  Score=96.52  Aligned_cols=104  Identities=26%  Similarity=0.388  Sum_probs=86.5

Q ss_pred             cHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHh
Q 028517           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (208)
Q Consensus        11 ~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (208)
                      +..+..++++|.++.|+.....+.  +.+ ....|++|||+|+-+|..+++++|+.+|++   ++.+|+.|.|||-.|+.
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~--nVn-~~~ggR~plhyAAD~GQl~ilefli~iGA~---i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGL--NVN-EIYGGRTPLHYAADYGQLSILEFLISIGAN---IQDKDKYGITPLLSAVW   76 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccc--cHH-HHhCCcccchHhhhcchHHHHHHHHHhccc---cCCccccCCcHHHHHHH
Confidence            466788999999999999987662  333 234889999999999999999999998887   67788899999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 028517           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (208)
Q Consensus        91 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  120 (208)
                      .|+.+++++|++.|++-+.+..+|.+.+..
T Consensus        77 EGH~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HhhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence            999999999999999888877777776653

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.71  E-value=8.5e-16  Score=110.56  Aligned_cols=129  Identities=39%  Similarity=0.524  Sum_probs=111.8

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC-----HHHHHHHHHcCC---CCCCCCC
Q 028517           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW-----LKIVELLISRGA---KINSKDK  145 (208)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~~~---~~~~~~~  145 (208)
                      ....+..+.++++.++..+..+++++++..+.+++.++..|.||+|+|+..++     .++++.|++.|+   ..+..+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            34445567889999999999999999999999888889999999999999998     899999999988   5556688


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517          146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       146 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      .|.||||+|+..|+.++++.|++.|++++.++..|.|+++.|+..++.+++..+...
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            899999999999999999999999999988889999999999999999888888774

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.66  E-value=7.5e-15  Score=105.62  Aligned_cols=128  Identities=43%  Similarity=0.634  Sum_probs=118.0

Q ss_pred             CCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCC-----HHHHHHHHhCCC---CCCCCC
Q 028517           40 LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN-----VTIVEMLLSKGA---DVNLKN  111 (208)
Q Consensus        40 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~Ll~~~~---~~~~~~  111 (208)
                      ..+..+.++++.++..+..+++++++..+.+   ++..+..|.||++.|+..++     .++++.|++.|+   ..+.++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGAD---VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCC---cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            3455688999999999999999999987766   57788999999999999999     999999999999   666679


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC
Q 028517          112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG  170 (208)
Q Consensus       112 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~  170 (208)
                      ..|.||+|+|+..|..++++.+++.|++++..+..|.|+++.|+..+..+++..+++.+
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999975

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.63  E-value=5.1e-16  Score=86.56  Aligned_cols=55  Identities=47%  Similarity=0.734  Sum_probs=31.5

Q ss_pred             HHHcC-CCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 028517          133 LISRG-AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA  187 (208)
Q Consensus       133 ll~~~-~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  187 (208)
                      |+++| .+++..|..|.||||+|+..|+.+++++|++.|++++.+|.+|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 78888999999999999999999999999988999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.61  E-value=8.6e-15  Score=120.22  Aligned_cols=105  Identities=30%  Similarity=0.447  Sum_probs=93.5

Q ss_pred             HHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHH
Q 028517           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC  163 (208)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~  163 (208)
                      .|+.|+..|+.+.++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            47788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-------CCCCCCCCCCCCCHHHHHH
Q 028517          164 ELLIEE-------GAEVDATDKAGQTPLMNAV  188 (208)
Q Consensus       164 ~~Ll~~-------~~~~~~~~~~g~t~l~~A~  188 (208)
                      ++|+++       |++.+..+..|.+|+..+.
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999988       7888877877777766543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.59  E-value=1.1e-15  Score=84.83  Aligned_cols=53  Identities=38%  Similarity=0.544  Sum_probs=28.0

Q ss_pred             CCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccc
Q 028517          147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCS  199 (208)
Q Consensus       147 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  199 (208)
                      |.||+|.|++.|+.+++++|+++|.+++.+|.+|.||+|+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34566666666666666666655666655566666666666666666655555

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.55  E-value=1.2e-13  Score=98.58  Aligned_cols=123  Identities=27%  Similarity=0.354  Sum_probs=111.0

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (208)
                      ..+.+|..++-.|+.+.+..|+..-  ...+.+|..|.|+|..|+..|+.+.++.+++.|++.+  ..++..++|||+.|
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~v--r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN--~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTV--RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN--DKQHGTLYTPLMFA   86 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHh--hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC--cccccccccHHHHH
Confidence            4578999999999999999999764  4678899999999999999999999999999998853  45678899999999


Q ss_pred             HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHH
Q 028517           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS  135 (208)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  135 (208)
                      +.+|+.++.+.|++.|+.+...+.-|.|+-..|+.-|+.+|+..+=+
T Consensus        87 ALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999999999999999999999999999999999999876644

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=2.4e-14  Score=79.34  Aligned_cols=54  Identities=48%  Similarity=0.767  Sum_probs=27.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517          114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI  167 (208)
Q Consensus       114 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll  167 (208)
                      |.||+|+|+..|+.+++++|+++|.+++.+|.+|.||||.|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            345555555555555555555555555555555555555555555555555553

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.53  E-value=1.1e-13  Score=113.82  Aligned_cols=104  Identities=31%  Similarity=0.434  Sum_probs=92.4

Q ss_pred             HHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCH
Q 028517           48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL  127 (208)
Q Consensus        48 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~  127 (208)
                      .|+.|+..|+.+.++.|++.+.+   ++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||+|+|+..++.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad---in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD---PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            48889999999999999998876   567788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc-------CCCCCCCCCCCCcHHHHH
Q 028517          128 KIVELLISR-------GAKINSKDKVGCTALHRG  154 (208)
Q Consensus       128 ~~~~~ll~~-------~~~~~~~~~~~~t~l~~A  154 (208)
                      +++++|+.+       +++.+..+..|.+|+..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            999999998       777777777676665544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=1.3e-13  Score=105.66  Aligned_cols=117  Identities=26%  Similarity=0.314  Sum_probs=96.0

Q ss_pred             HHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHH
Q 028517           49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK  128 (208)
Q Consensus        49 L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  128 (208)
                      |.-|+..|-+|+++.++..-.+   ....+..|.|+||.|+..||.++++||++.|++++..|.+||||||+|+..++..
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D---pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD---PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC---CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            4567788999999998854333   5666778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCC-CCCCCCcHHHHH--HhhCCHHHHHHHHH
Q 028517          129 IVELLISRGAKINS-KDKVGCTALHRG--ASTGNSALCELLIE  168 (208)
Q Consensus       129 ~~~~ll~~~~~~~~-~~~~~~t~l~~A--~~~~~~~~~~~Ll~  168 (208)
                      +++.|++.|+.+.. +-+++.|+..-+  ...|+.++.+||..
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999877654 345677877644  45688888898864

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=3.3e-14  Score=79.22  Aligned_cols=55  Identities=49%  Similarity=0.690  Sum_probs=24.5

Q ss_pred             HHhCC-CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 028517          100 LLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG  154 (208)
Q Consensus       100 Ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A  154 (208)
                      |+++| .+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            34555 56666677777777777777777777777777777777777777777665

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.49  E-value=2.7e-13  Score=96.75  Aligned_cols=123  Identities=33%  Similarity=0.370  Sum_probs=97.0

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCC-CCCCchHHHHHH
Q 028517           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAA  122 (208)
Q Consensus        44 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~~l~~a~  122 (208)
                      ...+||.-++..+..+.+..|++--..   .+..|.+|+++|..|+..|+.++++.|++.|++++.. +..+.|||+.|+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~---vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQ---VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhh---hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            346788888888888887777753222   6777888888888888888888888888888888763 456788888888


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHc
Q 028517          123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (208)
Q Consensus       123 ~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  169 (208)
                      ..|+.++...|++.|+.+...++-|.|+-..|++-|+-++|..+-.+
T Consensus        88 LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            88888888888888888888888888888888888888888766544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=4.5e-13  Score=102.74  Aligned_cols=101  Identities=37%  Similarity=0.490  Sum_probs=89.9

Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      -|...|-+++++.++..--++...+..|.|+||.|+..|+.+++++|+++|+++|..|++||||||.|+..++.-+++.|
T Consensus       556 DaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqL  635 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQL  635 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHH
Confidence            37888999999999998888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCC-CCCCCHHHHH
Q 028517          167 IEEGAEVDATD-KAGQTPLMNA  187 (208)
Q Consensus       167 l~~~~~~~~~~-~~g~t~l~~A  187 (208)
                      .+.|+-+.... +++.|+..-+
T Consensus       636 Ve~GaavfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  636 VESGAAVFASTLSDMETAAEKC  657 (752)
T ss_pred             HhccceEEeeecccccchhhhc
Confidence            99987664443 5677777643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.07  E-value=8.2e-11  Score=95.02  Aligned_cols=81  Identities=35%  Similarity=0.478  Sum_probs=43.6

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 028517          109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA  187 (208)
Q Consensus       109 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  187 (208)
                      .+|..|.+++|+++..+...+++||+++|++++.+|.+ |+||||.|..+|+.+++-.|+.+|+.+.+.|.+|.+||...
T Consensus        47 ikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~  126 (1267)
T KOG0783|consen   47 IKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFL  126 (1267)
T ss_pred             HHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHH
Confidence            34555555555555555555555555555555555443 45555555555555555555555555555555555555554


Q ss_pred             HH
Q 028517          188 VI  189 (208)
Q Consensus       188 ~~  189 (208)
                      ++
T Consensus       127 ~r  128 (1267)
T KOG0783|consen  127 SR  128 (1267)
T ss_pred             hh
Confidence            44

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.05  E-value=1.1e-09  Score=85.39  Aligned_cols=121  Identities=26%  Similarity=0.395  Sum_probs=88.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcC
Q 028517           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (208)
Q Consensus        13 ~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~   92 (208)
                      .|..|+..+++--++..-..+  .++..++.+..+.||+|+..|+-++++|++++++. +++...++.|.|+||.|+..+
T Consensus       869 eil~av~~~D~~klqE~h~~g--g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~-elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNG--GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-ELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcC--CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-HHHHHHhhhhhHHHHHHHHhc
Confidence            467777777765555554333  35556677778888888888888888888877653 446666777888888888888


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc
Q 028517           93 NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (208)
Q Consensus        93 ~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  136 (208)
                      +..+.++|++.|+.+...|..|.||-.-|-+.+..++..||-.+
T Consensus       946 ~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             chHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            88888888888877777777788887777777777777777644

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.05  E-value=3.3e-10  Score=91.63  Aligned_cols=108  Identities=22%  Similarity=0.372  Sum_probs=89.4

Q ss_pred             HHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCC
Q 028517           14 LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN   93 (208)
Q Consensus        14 l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~   93 (208)
                      ...+...+....++-+++..-.+..+..|..|+|+||+++..+..++++||+++|.+.  .-+..+.|+||||.|+.+|+
T Consensus        21 ~~~~~tKs~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv--~vqD~ESG~taLHRaiyyG~   98 (1267)
T KOG0783|consen   21 QDDSKTKSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV--FVQDEESGYTALHRAIYYGN   98 (1267)
T ss_pred             hhhhhhcCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee--eeccccccchHhhHhhhhch
Confidence            3344445555567777776645667888999999999999999999999999988763  23334689999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 028517           94 VTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (208)
Q Consensus        94 ~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~  123 (208)
                      ++++-.|+++|..+..+|++|..|+...++
T Consensus        99 idca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   99 IDCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            999999999999999999999999987665

>PF13606 Ank_3: Ankyrin repeat

Probab=99.00  E-value=7.9e-10  Score=52.84  Aligned_cols=29  Identities=45%  Similarity=0.684  Sum_probs=22.5

Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHHcCCCCC
Q 028517          146 VGCTALHRGASTGNSALCELLIEEGAEVD  174 (208)
Q Consensus       146 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~  174 (208)
                      +|+||||+|++.|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36778888888888888888888877765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.97  E-value=1.7e-09  Score=82.77  Aligned_cols=85  Identities=32%  Similarity=0.311  Sum_probs=71.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccc
Q 028517          117 ALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF  195 (208)
Q Consensus       117 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  195 (208)
                      -||-+++.++.+..--|+.-|++.|..+.+ |.||||.|++.|+..-+++|.-+|+|+...|.+|.||+.+|-..|+-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            477778888888888888888888887764 7889999999999888888888899998889899999999988888887


Q ss_pred             cccccc
Q 028517          196 SGCSSS  201 (208)
Q Consensus       196 ~~~l~~  201 (208)
                      .+-|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            766654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.97  E-value=8.6e-10  Score=84.00  Aligned_cols=121  Identities=21%  Similarity=0.219  Sum_probs=93.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhhhcc----CCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517           13 DLFKAAETGDSSTFKSLSKQQLLKSLS----LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (208)
Q Consensus        13 ~l~~a~~~g~~~~~~~l~~~~~~~~~~----~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (208)
                      .|..-.-..+++.+...-+..  .++.    .++..+..++.+|++.|.+..++.+.-.+.+   +...|.+..|+||.|
T Consensus       472 ~Lvs~fNFHNYD~L~h~~~~K--~DPRR~~~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D---~~~~DyD~RTaLHvA  546 (622)
T KOG0506|consen  472 QLVSKFNFHNYDSLRHPDNRK--IDPRREGGPRENDTVINVMYAAKNGDLSALRRFALQGMD---LETKDYDDRTALHVA  546 (622)
T ss_pred             HHHHHhcccCchhhccccccc--CCcccccCcccccchhhhhhhhhcCCHHHHHHHHHhccc---ccccccccchhheee
Confidence            444455556666666654422  2332    2345566788999999999999888766665   788888899999999


Q ss_pred             HhcCCHHHHHHHHh-CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCC
Q 028517           89 ASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA  138 (208)
Q Consensus        89 ~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  138 (208)
                      +..|+++++++|++ -+.+++.+|++|+||+.-|...++.+++++|.+...
T Consensus       547 AaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  547 AAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             cccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            99999999999999 467888899999999999999999999998887643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.94  E-value=2.9e-09  Score=83.06  Aligned_cols=119  Identities=27%  Similarity=0.445  Sum_probs=99.3

Q ss_pred             HHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHhhCCHHHHHH
Q 028517           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK--INSKDKVGCTALHRGASTGNSALCEL  165 (208)
Q Consensus        88 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~t~l~~A~~~~~~~~~~~  165 (208)
                      |+..+.+--++-....|..+-.++.+..+.||+|+..|+-++++|++++|..  ++..|..|.|+||.|+-.++-.+.++
T Consensus       873 av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~  952 (1004)
T KOG0782|consen  873 AVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQL  952 (1004)
T ss_pred             HHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHH
Confidence            4444444334444456777777788889999999999999999999999854  44567789999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          166 LIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       166 Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |.+.|+.+...|..|.||-.-|-+.|.++...||-+...|+
T Consensus       953 lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~yk  993 (1004)
T KOG0782|consen  953 LVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQNYK  993 (1004)
T ss_pred             HHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhchh
Confidence            99999999999999999999999999999999998766554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.93  E-value=8.7e-09  Score=79.04  Aligned_cols=85  Identities=35%  Similarity=0.463  Sum_probs=77.2

Q ss_pred             HHHHHHhcCCHHHHHHHHhCCCCCCCCCC-CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517           84 PIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (208)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~  162 (208)
                      -||.+++.|+.+..-.|+..|++++..+. .|.||||.|++.|+..-+++|+-+|+|+...|.+|.||+.+|-..|+-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            58899999999999999999999998765 79999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHH
Q 028517          163 CELLIE  168 (208)
Q Consensus       163 ~~~Ll~  168 (208)
                      .+.|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            766654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.92  E-value=1.9e-09  Score=82.24  Aligned_cols=93  Identities=26%  Similarity=0.390  Sum_probs=85.1

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHh
Q 028517           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGAS  156 (208)
Q Consensus        78 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~A~~  156 (208)
                      +..+...+..|++.|.+..++.+.-.|.++..+|.+..|.||+|+.-|+.+++++|++. +.+++.+|.||+|||.-|..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34566788999999999999999999999999999999999999999999999999976 88999999999999999999


Q ss_pred             hCCHHHHHHHHHcC
Q 028517          157 TGNSALCELLIEEG  170 (208)
Q Consensus       157 ~~~~~~~~~Ll~~~  170 (208)
                      .++.+++++|-+..
T Consensus       583 F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQ  596 (622)
T ss_pred             cCcHHHHHHHHHHh
Confidence            99999999998753

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.89  E-value=4.5e-09  Score=51.64  Aligned_cols=32  Identities=38%  Similarity=0.667  Sum_probs=25.3

Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCC
Q 028517          146 VGCTALHRGASTGNSALCELLIEEGAEVDATD  177 (208)
Q Consensus       146 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  177 (208)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36788888888888888888888888887665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.81  E-value=9.6e-09  Score=49.05  Aligned_cols=24  Identities=54%  Similarity=0.765  Sum_probs=9.9

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCC
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGA  105 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~  105 (208)
                      +||||.|++.|+.+++++|+++|+
T Consensus         3 ~T~Lh~A~~~g~~e~v~~Ll~~ga   26 (30)
T PF13606_consen    3 NTPLHLAASNGNIEIVKYLLEHGA   26 (30)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCC
Confidence            344444444444444444444433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.80  E-value=4.8e-08  Score=79.63  Aligned_cols=88  Identities=24%  Similarity=0.312  Sum_probs=59.8

Q ss_pred             ccCcHHHHHHHHcCChHHHHHHHHHhhh--hhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHH
Q 028517            8 TIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (208)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~--~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l   85 (208)
                      ..+...+..|+..|++-.|+..++....  .+.+-.|.-|+++|+.|+...+.++.++|++..-     ..     ..+|
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~-----~~-----gdAL   92 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS-----EE-----GDAL   92 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcc-----cc-----chHH
Confidence            3445667777788888888877775533  4555667777777777777777777777775321     11     3467


Q ss_pred             HHHHhcCCHHHHHHHHhCCC
Q 028517           86 HSAASIGNVTIVEMLLSKGA  105 (208)
Q Consensus        86 ~~a~~~~~~~~~~~Ll~~~~  105 (208)
                      ..|++.|..++++.++.+..
T Consensus        93 L~aI~~~~v~~VE~ll~~~~  112 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFV  112 (822)
T ss_pred             HHHHHHHHHHHHHHHHhccc
Confidence            77777777777777777643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.77  E-value=3.8e-08  Score=76.96  Aligned_cols=90  Identities=29%  Similarity=0.442  Sum_probs=52.3

Q ss_pred             HHHHHhcCCHHHHHHHHhcccccccccc-cCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCH
Q 028517           49 LHVAASCGHPEVVEILLSVDESANVVNA-VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL  127 (208)
Q Consensus        49 L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~  127 (208)
                      |..|....++..+-.|+.+|...+..+. .+..|.|+||.|++.|++.+.++|+-+|.++..+|..|.|+|+||.+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            4444455555555555655544332222 233456666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCC
Q 028517          128 KIVELLISRGA  138 (208)
Q Consensus       128 ~~~~~ll~~~~  138 (208)
                      +|+..|+++|+
T Consensus       708 ec~d~llq~gc  718 (749)
T KOG0705|consen  708 ECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHcCC
Confidence            66666666654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.76  E-value=2e-08  Score=49.24  Aligned_cols=30  Identities=47%  Similarity=0.766  Sum_probs=15.6

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCCCCCCC
Q 028517           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLK  110 (208)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  110 (208)
                      |.||||+|+..|+.+++++|+++|++++.+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            445555555555555555555555555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.72  E-value=1.6e-08  Score=78.16  Aligned_cols=86  Identities=28%  Similarity=0.442  Sum_probs=54.2

Q ss_pred             HHHHHHhcCCHHHHHHHHh--CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517           84 PIHSAASIGNVTIVEMLLS--KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (208)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~  161 (208)
                      |+|+++.....+-+...+.  ....++.+|..|.||+|.|+..|+...+..|+..|+++..++.+|++|||.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            4666666655544444322  23455566666677777777777777777777777776667777777777777777766


Q ss_pred             HHHHHHHc
Q 028517          162 LCELLIEE  169 (208)
Q Consensus       162 ~~~~Ll~~  169 (208)
                      ++.-++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            66555543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.70  E-value=5.9e-08  Score=75.90  Aligned_cols=93  Identities=25%  Similarity=0.307  Sum_probs=79.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhhhc--cCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517           12 KDLFKAAETGDSSTFKSLSKQQLLKSL--SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (208)
Q Consensus        12 ~~l~~a~~~g~~~~~~~l~~~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (208)
                      -.|..|+...++..+..|+..+.....  ...+.+|+|+||+||..|++.+.++|+-++.+   ....|..|.|+|++|=
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d---v~~rda~g~t~l~yar  702 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD---VMARDAHGRTALFYAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc---ceecccCCchhhhhHh
Confidence            357889999999999999987743322  34466789999999999999999999988876   5678899999999999


Q ss_pred             hcCCHHHHHHHHhCCCCC
Q 028517           90 SIGNVTIVEMLLSKGADV  107 (208)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~  107 (208)
                      +.|..+++..|+++|+..
T Consensus       703 ~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  703 QAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hcccHHHHHHHHHcCCCc
Confidence            999999999999998743

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.62  E-value=1.7e-07  Score=72.73  Aligned_cols=89  Identities=35%  Similarity=0.499  Sum_probs=72.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhc
Q 028517           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (208)
Q Consensus        12 ~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~   91 (208)
                      .++|.++...+.+.+...+.......+..+|..|.||||+|+..|+.+.++.|+..+++   ...++..|++|||.|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---v~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---VSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---ccccccccccHHHHHHHc
Confidence            45888888888888888765554556777888889999999999999999999887776   566778889999999999


Q ss_pred             CCHHHHHHHHhC
Q 028517           92 GNVTIVEMLLSK  103 (208)
Q Consensus        92 ~~~~~~~~Ll~~  103 (208)
                      |+.+++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            998888888776

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.43  E-value=2.1e-07  Score=77.40  Aligned_cols=89  Identities=33%  Similarity=0.432  Sum_probs=79.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCC
Q 028517          113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN  192 (208)
Q Consensus       113 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  192 (208)
                      .|.+++|.|+..+..-+.+.|+++|++++..|..|.||+|.+...|+...+..++++|++++..+.+|++++++|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             ccccccccc
Q 028517          193 KEFSGCSSS  201 (208)
Q Consensus       193 ~~~~~~l~~  201 (208)
                      -+++.++..
T Consensus       735 ~d~~~l~~l  743 (785)
T KOG0521|consen  735 ADIVLLLRL  743 (785)
T ss_pred             ccHHHHHhh
Confidence            776665543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.39  E-value=2.1e-06  Score=64.28  Aligned_cols=73  Identities=27%  Similarity=0.259  Sum_probs=58.6

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (208)
Q Consensus        46 ~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (208)
                      .--|..||+.|..+.+++|++.|.+   +|..|...+.||+.|+..||.+++++|++.|+-...-...|..++.-|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn---VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN---VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC---cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            3348899999999999999987665   788888899999999999999999999999986665444666664433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.35  E-value=2.1e-06  Score=70.44  Aligned_cols=143  Identities=19%  Similarity=0.155  Sum_probs=112.0

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHhcccc-cccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517           43 DDDRTLLHVAASCGHPEVVEILLSVDES-ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (208)
Q Consensus        43 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (208)
                      ..+.--+..|+..|+...++..++.... .-..+..|.-|.++|+.|+.+.+.++..+|++++.+.       ..++.+|
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~a   95 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLA   95 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHH
Confidence            3445567899999999999998864443 1226778889999999999999999999999997655       3478899


Q ss_pred             HHcCCHHHHHHHHHcCCCCC----------CCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 028517          122 ASKGWLKIVELLISRGAKIN----------SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY  191 (208)
Q Consensus       122 ~~~~~~~~~~~ll~~~~~~~----------~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  191 (208)
                      +..|..++++.++.+.....          ..-..+.||+.+|+..++.|+++.|+.+|+.+-.+......+-.+.....
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~C~~C~~~~~  175 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCECKTCKRETV  175 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccccCchHhhhccc
Confidence            99999999999998743321          11234789999999999999999999999998877766665555544443


Q ss_pred             C
Q 028517          192 N  192 (208)
Q Consensus       192 ~  192 (208)
                      .
T Consensus       176 ~  176 (822)
T KOG3609|consen  176 T  176 (822)
T ss_pred             c
Confidence            3

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.31  E-value=5.3e-07  Score=61.18  Aligned_cols=69  Identities=29%  Similarity=0.356  Sum_probs=61.2

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCC
Q 028517          104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTGNSALCELLIEEGAE  172 (208)
Q Consensus       104 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~  172 (208)
                      +.+++.+|..|+|+++.|+.-|+.+.+.||+.+| +++-..|..+.+++.+|-+.|..+++..|.+.--+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            4568889999999999999999999999999999 78888899999999999999999999999887333

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.27  E-value=4.4e-06  Score=62.65  Aligned_cols=70  Identities=24%  Similarity=0.305  Sum_probs=62.1

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL  151 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l  151 (208)
                      ..-|..||+.|..+.+++|++.|.++|..|+....|+.+|+..|+.+++++|+++|+-......+|..++
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            3457889999999999999999999999999999999999999999999999999987765555666554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.17  E-value=1.9e-06  Score=71.99  Aligned_cols=127  Identities=24%  Similarity=0.251  Sum_probs=96.0

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHcCCHHHHHHH-HHcCCCCCCCCCCCCcHHH
Q 028517           75 NAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELL-ISRGAKINSKDKVGCTALH  152 (208)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l-l~~~~~~~~~~~~~~t~l~  152 (208)
                      ....-.|++.+|.+...+..-+++.+++- +......+..|...+|.++ .+..+..-++ .-.|..++.+|..|+||||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccc
Confidence            33445788899999999998888888884 7767777778888888744 4444443333 3457778888999999999


Q ss_pred             HHHhhCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517          153 RGASTGNSALCELLIEEGAEV------DATDKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       153 ~A~~~~~~~~~~~Ll~~~~~~------~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      +|...|...++..|++.|++.      ..-...|.|+..+|..+|+..+..+|.+.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999998765543      23345689999999999998888887663

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.13  E-value=1.6e-05  Score=54.21  Aligned_cols=68  Identities=28%  Similarity=0.387  Sum_probs=62.2

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhCC-CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 028517           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN  141 (208)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  141 (208)
                      ++.+|..|+|+++.|+..|+.+.+.+|+.+| +.+...|.++.+...+|-+.|..+++..|.+...+-+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETS   73 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCC
Confidence            6888999999999999999999999999999 8899999999999999999999999999988744433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.10  E-value=4.8e-06  Score=69.60  Aligned_cols=87  Identities=38%  Similarity=0.504  Sum_probs=78.4

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 028517           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (208)
Q Consensus        80 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~  159 (208)
                      .|.++||.|+..+..-+..+|++.|.+++.+|..|.+|+|.+...|+......++++|++.+..+..|.+|+..|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999977755


Q ss_pred             HHHHHHH
Q 028517          160 SALCELL  166 (208)
Q Consensus       160 ~~~~~~L  166 (208)
                      .+++-++
T Consensus       735 ~d~~~l~  741 (785)
T KOG0521|consen  735 ADIVLLL  741 (785)
T ss_pred             ccHHHHH
Confidence            5544333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.09  E-value=1.2e-05  Score=67.46  Aligned_cols=130  Identities=25%  Similarity=0.288  Sum_probs=98.8

Q ss_pred             hhccCCCCCCchHHHHHHhcCCHHHHHHHHhc-ccccccccccCCCCCcHHHHHHhcCCHHHHHHHHh-CCCCCCCCCCC
Q 028517           36 KSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDG  113 (208)
Q Consensus        36 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~-~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~  113 (208)
                      .......-.|.+.+|+++..+..-+++.+++- +..   ....+..+...+|. |..++.+.+-+++. .|..++.+|..
T Consensus       565 ~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~---~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~  640 (975)
T KOG0520|consen  565 NLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG---DLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRN  640 (975)
T ss_pred             hccccCCCcchHHHHHHHHHhHHHHHHHHhcccccC---chhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCC
Confidence            34445566789999999999999999999874 322   23345666777777 55555565555554 78889999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCcHHHHHHhhCCHHHHHHHHHc
Q 028517          114 GRTALHYAASKGWLKIVELLISRGAK------INSKDKVGCTALHRGASTGNSALCELLIEE  169 (208)
Q Consensus       114 ~~~~l~~a~~~~~~~~~~~ll~~~~~------~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  169 (208)
                      |+||||+|..+|+..++..|.+-|++      +......|.|+...|-.+|+..+.-+|-++
T Consensus       641 G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  641 GWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999999866543      333455688999999999998888888664

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.40  E-value=0.0031  Score=43.10  Aligned_cols=140  Identities=16%  Similarity=0.052  Sum_probs=89.8

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHc
Q 028517           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (208)
Q Consensus        45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~  124 (208)
                      -.-.|..|++++-+.++++.-+....      .-...++.+..||+..+.++++|+-+.-...     +-.+.+.+|+..
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~L~~------~~~~~q~LFElAC~~qkydiV~WI~qnL~i~-----~~~~iFdIA~~~  114 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKEDLEN------ERYLNQELFELACEEQKYDIVKWIGQNLHIY-----NPEDIFDIAFAK  114 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHhhc------chhHHHHHHHHHHHHccccHHHHHhhccCCC-----Cchhhhhhhhhc
Confidence            34567888888888888887542211      1124566777899999999999985542222     234467788887


Q ss_pred             CCHHHHH----HHHHcCCCCCCCCCC--CCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccc
Q 028517          125 GWLKIVE----LLISRGAKINSKDKV--GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGC  198 (208)
Q Consensus       125 ~~~~~~~----~ll~~~~~~~~~~~~--~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  198 (208)
                      ...++..    .+.++...-...|..  -..-|..|+..|....+.-.+++|.+.+.      +++..|+..++..|+.+
T Consensus       115 kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~y  188 (192)
T PF03158_consen  115 KDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDY  188 (192)
T ss_pred             cchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHH
Confidence            7776632    222332111111110  01235688888999888888888877653      78999999998888887


Q ss_pred             ccc
Q 028517          199 SSS  201 (208)
Q Consensus       199 l~~  201 (208)
                      ++.
T Consensus       189 fi~  191 (192)
T PF03158_consen  189 FIR  191 (192)
T ss_pred             hhc
Confidence            764

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.34  E-value=0.00061  Score=53.28  Aligned_cols=66  Identities=27%  Similarity=0.289  Sum_probs=53.8

Q ss_pred             HcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 028517          123 SKGWLKIVELLISRGAKINS------KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV  188 (208)
Q Consensus       123 ~~~~~~~~~~ll~~~~~~~~------~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  188 (208)
                      ...-...+++|.+++.+.|.      .+....|+||+|+..|.-.++.+||+.|.|+..+|..|.||..++.
T Consensus       400 k~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  400 KKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            34446788899988766543      2334578999999999999999999999999999999999998876

>smart00248 ANK ankyrin repeats

Probab=97.32  E-value=0.00062  Score=31.08  Aligned_cols=27  Identities=41%  Similarity=0.733  Sum_probs=17.1

Q ss_pred             CCcHHHHHHhhCCHHHHHHHHHcCCCC
Q 028517          147 GCTALHRGASTGNSALCELLIEEGAEV  173 (208)
Q Consensus       147 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~  173 (208)
                      +.||+++|+..++.++++.|++++.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.31  E-value=0.0027  Score=43.44  Aligned_cols=137  Identities=14%  Similarity=0.127  Sum_probs=93.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcC
Q 028517           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (208)
Q Consensus        13 ~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~   92 (208)
                      -|.+|++.+-+.++++.  +   ......-...++.+-.||...+.|+++|+-+.-        .-..-.+.+-.|....
T Consensus        49 Ll~HAVk~nmL~ILqky--k---e~L~~~~~~~q~LFElAC~~qkydiV~WI~qnL--------~i~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKY--K---EDLENERYLNQELFELACEEQKYDIVKWIGQNL--------HIYNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHcCcHHHHHHH--H---HHhhcchhHHHHHHHHHHHHccccHHHHHhhcc--------CCCCchhhhhhhhhcc
Confidence            46678888887777776  2   233322356788999999999999999995321        1123445678899988


Q ss_pred             CHHHHH----HHHhCCCCCCCCCCC--CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517           93 NVTIVE----MLLSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        93 ~~~~~~----~Ll~~~~~~~~~~~~--~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      +.++..    ++.++....+..|..  -..-+..|+..|-...+...+++|.+++.      ++|..|+..++..++.++
T Consensus       116 DlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yf  189 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYF  189 (192)
T ss_pred             chhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHh
Confidence            877642    233332211111110  11336678899999999999999887643      699999999999999888


Q ss_pred             HH
Q 028517          167 IE  168 (208)
Q Consensus       167 l~  168 (208)
                      +.
T Consensus       190 i~  191 (192)
T PF03158_consen  190 IR  191 (192)
T ss_pred             hc
Confidence            64

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=97.13  E-value=0.0012  Score=29.98  Aligned_cols=19  Identities=58%  Similarity=0.756  Sum_probs=7.5

Q ss_pred             hHHHHHHhcCCHHHHHHHH
Q 028517           47 TLLHVAASCGHPEVVEILL   65 (208)
Q Consensus        47 t~L~~A~~~g~~~~~~~ll   65 (208)
                      ||+|+|+..++.++++.++
T Consensus         4 ~~l~~~~~~~~~~~~~~ll   22 (30)
T smart00248        4 TPLHLAAENGNLEVVKLLL   22 (30)
T ss_pred             CHHHHHHHcCCHHHHHHHH
Confidence            3333333333333333333

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.95  E-value=0.0025  Score=50.05  Aligned_cols=62  Identities=29%  Similarity=0.309  Sum_probs=50.4

Q ss_pred             HHHHHHHHhCCCCCCCC------CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 028517           94 VTIVEMLLSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGA  155 (208)
Q Consensus        94 ~~~~~~Ll~~~~~~~~~------~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~  155 (208)
                      +..+.+|.+++...+..      +....|+||+|+.+|...|+.+|++.|+|+..+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            56777888876554332      334678999999999999999999999999999999999998776

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.71  E-value=0.025  Score=40.19  Aligned_cols=45  Identities=33%  Similarity=0.507  Sum_probs=31.4

Q ss_pred             HHHHHHHHHcC-CCCCC---CCCCCCcHHHHHHhhCCHHHHHHHHHcCC
Q 028517          127 LKIVELLISRG-AKINS---KDKVGCTALHRGASTGNSALCELLIEEGA  171 (208)
Q Consensus       127 ~~~~~~ll~~~-~~~~~---~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~  171 (208)
                      ..++++++++| +++|.   +-+.|.|-|.-|+++++.+++.+|+++|+
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            45667777776 23332   33457888888888888888888888876

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.62  E-value=0.12  Score=36.96  Aligned_cols=118  Identities=21%  Similarity=0.238  Sum_probs=84.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccc-cccccCCCCCcHHHHHHh
Q 028517           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN-VVNAVDEEGWAPIHSAAS   90 (208)
Q Consensus        12 ~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~-~~~~~~~~~~~~l~~a~~   90 (208)
                      -.|..|+..-+++.+.-+....         ..-.+++.+|+..+..+++-+|+....-.. .+- ....+..-+.++.+
T Consensus       155 isledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~-~~~~~~ydieY~LS  224 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVA-SMEKELYDIEYLLS  224 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhcceecchhh-hcCcchhhHHHHHh
Confidence            4567888888888877776433         123578999999999999999997543110 011 11223335666666


Q ss_pred             c--CCHHHHHHHHhCC-CCCCC---CCCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 028517           91 I--GNVTIVEMLLSKG-ADVNL---KNDGGRTALHYAASKGWLKIVELLISRGAK  139 (208)
Q Consensus        91 ~--~~~~~~~~Ll~~~-~~~~~---~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  139 (208)
                      .  .+..++++++++| ++++.   +-.+|.|-|..|...++.+++..|+++|+-
T Consensus       225 ~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            5  4578999999988 45553   355899999999999999999999999974

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.69  E-value=0.12  Score=30.39  Aligned_cols=47  Identities=21%  Similarity=0.188  Sum_probs=29.6

Q ss_pred             cHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHh
Q 028517           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLS   66 (208)
Q Consensus        11 ~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~   66 (208)
                      ...+..|+..|+.|+++.+++...         .....+..|+.+.+.++++||++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~---------~~~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK---------PDNDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc---------cHHHHHHHHHHHhhHHHHHHHHH
Confidence            456677777777777777764331         01345677777777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.41  E-value=0.093  Score=30.81  Aligned_cols=45  Identities=27%  Similarity=0.344  Sum_probs=20.0

Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc
Q 028517           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (208)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  136 (208)
                      +..|+..|+.|+++.+++.+. ++      ...+..|+...+-++++||+++
T Consensus        10 l~~Ai~GGN~eII~~c~~~~~-~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen   10 LEYAIIGGNFEIINICLKKNK-PD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHhCCCHHHHHHHHHHhc-cH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            444455555555554444321 10      2234445555555555555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	208
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-27
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-26
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-26
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-26
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-25
1uoh_A	226	Human Gankyrin Length = 226		3e-25
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-25
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-25
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-25
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-25
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-15
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-25
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-24
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-24
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-24
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-24
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-23
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-23
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-23
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-22
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-22
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-22
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-22
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		6e-22
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		6e-22
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-22
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-16
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-22
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-07
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		8e-22
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-22
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-16
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-21
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-21
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-21
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-20
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-06
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-19
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-19
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-19
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-19
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-18
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-16
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-18
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-16
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-18
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-16
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-18
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-17
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-16
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-16
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-16
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-16
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-16
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-16
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-15
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		9e-15
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-14
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-14
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-13
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-13
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-13
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-13
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-13
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-13
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-12
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		8e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-12
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		3e-12
2xen_A	91	Structural Determinants For Improved Thermal Stabil		9e-12
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-11
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		3e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		3e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-10
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-10
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-10
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-10
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-10
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		5e-10
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		8e-10
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-09
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-09
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		4e-09
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		5e-09
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-08
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-08
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-07
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-07
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-07
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-07
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-07
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		9e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-07
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		3e-07
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		6e-07
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		1e-06
3deo_A	183	Structural Basis For Specific Substrate Recognition		2e-06
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		2e-06
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		2e-06
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		2e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-06
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		5e-06
3kea_A	285	Structure Function Studies Of Vaccinia Virus Host-R		7e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		5e-05
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		6e-05
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		6e-05
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		3e-04
3t8k_A	186	The Crystal Structure Of A Functionally Unknown Pro		6e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 95/154 (61%), Gaps = 3/154 (1%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G+ + V+ L+   E+   VNA D +G  P+H AA  G+  IV++L+SKGADVN K+
Sbjct: 11  AAENGNKDRVKDLI---ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             GRT LHYAA +G  +IV+LLIS+GA +N+KD  G T LH  A  G+  + +LLI +GA
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205
           +V+ +D  G+TPL  A    N+E          W
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 94/145 (64%), Gaps = 3/145 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D++G+ P+H AA  G++ IVE+LL  GADVN K+
Sbjct: 9   AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L+IVE+L+  GA +N+KDK G T LH  A  G+  + E+L++ GA
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 172 EVDATDKAGQTPLMNAVICYNKEFS 196
           +V+A DK G+TP   A+   N++ +
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIA 150

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 88/133 (66%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D++G+ P+H AA  G++ IVE+LL  GADVN K+
Sbjct: 9   AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L+IVE+L+  GA +N+KDK G T LH  A  G+  + E+L++ GA
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 172 EVDATDKAGQTPL 184
           +V+A DK G+TP 
Sbjct: 126 DVNAQDKFGKTPF 138

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 3/154 (1%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G+ + V+ L+   E+   VNA D +G  P+H AA  G+  +V++L+SKGADVN K+
Sbjct: 11  AAENGNKDRVKDLI---ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             GRT LH+AA  G  ++V+LLIS+GA +N+KD  G T LH  A  G+  + +LLI +GA
Sbjct: 68  SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205
           +V+ +D  G+TPL  A    N+E          W
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 84/126 (66%), Gaps = 3/126 (2%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT LH+AA  GH EVV++LL   E+   VNA D+ G  P+H AA  G++ +V++LL  GA
Sbjct: 3   RTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
           DVN K+  GRT LH AA  G L++V+LL+  GA +N+KDK G T LH  A  G+  + +L
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 166 LIEEGA 171
           L+E GA
Sbjct: 120 LLEAGA 125

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN  
Sbjct: 94  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPL 184
           +  +L+   A  +  D  G TPL
Sbjct: 154 MIHILLYYKASTNIQDTEGNTPL 176

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN  
Sbjct: 95  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 154
Query: 162 LCELLIEEGAEVDATDKAGQTPL 184
           +  +L+   A  +  D  G TPL
Sbjct: 155 MIHILLYYKASTNIQDTEGNTPL 177

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D++G+ P+H AA  G++ IVE+LL  GADVN K+
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L+IVE+L+  GA +N+KDK G T LH  A  G+  + E+L++ GA
Sbjct: 78  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 172 EVDATDKAGQTPL 184
           +V+A DK G+T  
Sbjct: 138 DVNAQDKFGKTAF 150

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN  
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPL 184
           +  +L+   A  +  D  G TPL
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPL 176

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   T LH+AA  GHPE+VE+LL   +    VNA D +GW P+H AA  G++ IVE+L
Sbjct: 43  HDDQGSTPLHLAAWIGHPEIVEVLL---KHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GADVN ++  G T LH AA +G L+IVE+L+  GA +N++DK G TA       GN 
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 161 ALCELL 166
            L E+L
Sbjct: 160 DLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 60/97 (61%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  +D G T LH AA  G  +IVE+L+  GA +N++D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
            T LH  A  G+  + E+L++ GA+V+A D  G TPL
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPL 117

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN  
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPL 184
           +  +L+   A  +  D  G TPL
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPL 176

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D  GW P+H AA  G++ IVE+LL  GADVN K+
Sbjct: 21  AARAGQDDEVRILMA---NGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L+IVE+L+  GA +N+ D  G T LH  A  G+  + E+L++ GA
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 172 EVDATDKAGQTPL 184
           +V+A DK G+T  
Sbjct: 138 DVNAQDKFGKTAF 150

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G+ + V+ LL   E+    NA D +G  P+H AA  G+  IV++LLSKGAD N K+
Sbjct: 11  AAENGNKDRVKDLL---ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             GRT LHYAA  G  +IV+LL+S+GA  N+KD  G T LH  A  G+  + +LL+ +GA
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205
           + + +D  G+TPL  A    N+E          W
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D  GW P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L++VE+L+  GA +N+ D  G T LH  A+ G+  + E+L++ GA
Sbjct: 78  SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPL 184
           +V+A DK G+T  
Sbjct: 138 DVNAQDKFGKTAF 150

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D  G  P+H AA +G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA +G L+IVE+L+  GA +N+ D +G T LH  A TG+  + E+L++ GA
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
           +V+A DK G+T  
Sbjct: 138 DVNAQDKFGKTAF 150

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT LH+AA+ GH E+VE+LL    +   VNAVD  G  P+H AAS+G++ IVE+LL  GA
Sbjct: 36  RTPLHMAAAVGHLEIVEVLL---RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
           DVN K+  G T L+ AA  G L+IVE+L+  GA +N++DK G TA       GN  L E+
Sbjct: 93  DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEI 152
Query: 166 L 166
           L
Sbjct: 153 L 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 79/120 (65%), Gaps = 3/120 (2%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNA D  G  P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           VN K+D G T LH AA++G L+IVE+L+  GA +N++DK G TA     + GN  L E+L
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D +G+ P+H AAS G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA+ G L+IVE+L+  GA +N+ D  G T LH  A  G+  + E+L++ GA
Sbjct: 78  LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPL 184
           +V+A DK G+T  
Sbjct: 138 DVNAQDKFGKTAF 150

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+  + GH E++E+LL   + A  VNA D+ GW P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLVVNNGHLEIIEVLL---KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G+ + V+ LL   E+   VNA D +G  P+H AA  G+  +V++LLS+GAD N K+
Sbjct: 11  AAENGNKDRVKDLL---ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G+T LH AA  G  ++V+LL+S+GA  N+KD  G T LH  A  G+  + +LL+ +GA
Sbjct: 68  SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205
           + + +D  G+TPL  A    N+E          W
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D  G  P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           + G T LH AA  G L+IVE+L+  GA +N+KD  G T LH  A  G+  + E+L++ GA
Sbjct: 78  NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
           +V+A DK G+T  
Sbjct: 138 DVNAQDKFGKTAF 150

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA+ G  + V IL++   +   VNA D+ G  P+H AA+ G + IVE+LL  GADVN  +
Sbjct: 13  AAAAGQDDEVRILMA---NGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA  G L+IVE+L+  GA +N+ D+ G T LH  A +G   + E+L++ GA
Sbjct: 70  SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 172 EVDATDKAGQTPL 184
           +V+A D  G T  
Sbjct: 130 DVNAQDALGLTAF 142

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK     LHR AS G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAV 188
           +  L ELL   G + V+  DK G TPL +A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK     LHR AS G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAV 188
           +  L ELL   G + V+  DK G TPL +A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA+ GH E+VE+LL   +    VNA+D  G  P+H AA IG++ IVE+LL  GAD
Sbjct: 49  TPLHLAATYGHLEIVEVLL---KHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  +  G T LH AA+ G L+IVE+L+  GA +N+ D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
            T LH  A  G+  + E+L++ GA+V+A D  G TPL  A I  + E 
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  +T LH+AA  GH E+VE+LL   +    VNA D+ G  P+H AA  G++ IVE+L
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLL---KHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GADVN  +  G T LH AA  G L+IVE+L+  GA +N++DK G TA       GN 
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 161 ALCELL 166
            L E+L
Sbjct: 160 DLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N++D  G T LH  A  G+  + E+L++ GA+V+A DK G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 181 QTPLMNAVICYNKEF 195
            TPL  A +  + E 
Sbjct: 81  DTPLHLAALYGHLEI 95

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK     LHR AS G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAV 188
           +  L ELL   G + V+  DK G TPL +A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA+ GH E+VE+LL   +    VNA+D  G  P+H AA IG++ IVE+LL  GAD
Sbjct: 49  TPLHLAATYGHLEIVEVLL---KHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 65/108 (60%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADVN  +  G T LH AA+ G L+IVE+L+  GA +N+ D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
            T LH  A  G+  + E+L++ GA+V+A D  G TPL  A I  + E 
Sbjct: 81  STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           R LL  AA  G  + V IL++   +   VNA D  G  P+H AA  G++ IVE+LL  GA
Sbjct: 16  RKLLE-AARAGQDDEVRILMA---NGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
           DV+  +  G T LH AA  G L+IVE+L+  GA +N+ D  G T LH  A  G   + E+
Sbjct: 72  DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 166 LIEEGAEVDATDKAGQTPL 184
           L++ GA+V+A DK G+T  
Sbjct: 132 LLKHGADVNAQDKFGKTAF 150

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNAVD  G  P+H AA  G++ IVE+LL  GADV+  +
Sbjct: 21  AARAGQDDEVRILIA---NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T LH AA  G L+IVE+L+  GA +N+ D  G T LH  A  G+  + E+L++ GA
Sbjct: 78  VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
           +V+A DK G+T  
Sbjct: 138 DVNAQDKFGKTAF 150

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 80/133 (60%), Gaps = 3/133 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D  GW P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGRDDEVRILMA---NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
             G T L  AA  G L+IVE+L+  GA +N+ D  G T LH  A  G+  + E+L++ GA
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 172 EVDATDKAGQTPL 184
           +V+A DK G+T  
Sbjct: 138 DVNAQDKFGKTAF 150

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N++D  G T LH  A  G+  + E+L++ GA+V+A D AG
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 181 QTPLMNAVICYNKEF 195
            TPL  A +  + E 
Sbjct: 81  MTPLRLAALFGHLEI 95

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA+DE+G  P+H AA +G++ IVE+LL  GADVN ++
Sbjct: 21  AARAGQDDEVRILMA---NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           + G T LH AA +G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N+ D+ G T LH  A  G+  + E+L++ GA+V+A D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 181 QTPLMNAVI 189
            TPL  A I
Sbjct: 81  ITPLHLAAI 89

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
           DR LL  AA  G  E V+ L +V      VN  D EG    P+H AA    V++VE LL 
Sbjct: 11  DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
            GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D    T LH  A+ G   +
Sbjct: 66  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 125
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
           C+LL++ GA+    ++ G TPL
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPL 147

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
           DR LL  AA  G  E V+ L +V      VN  D EG    P+H AA    V++VE LL 
Sbjct: 9   DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
            GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D    T LH  A+ G   +
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
           C+LL++ GA+    ++ G TPL
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPL 145

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
           DR LL  AA  G  E V+ L +V      VN  D EG    P+H AA    V++VE LL 
Sbjct: 13  DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
            GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D    T LH  A+ G   +
Sbjct: 68  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
           C+LL++ GA+    ++ G TPL
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPL 149

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 3/141 (2%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA     EV   LL    SAN   A   +G  P+H AA  G+  +V +LLSK A+
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSAN---AESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            NL N  G T LH  A +G + + ++LI  G  +++  ++G T LH  +  GN  L + L
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 167 IEEGAEVDATDKAGQTPLMNA 187
           ++  A+V+A  K G +PL  A
Sbjct: 331 LQHQADVNAKTKLGYSPLHQA 351

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN ++
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             GRT LH AA+ G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 60/88 (68%)
Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
           V +L++ GADVN  +D G T LH AA +G L+IVE+L+  GA +N++D  G T LH  A+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPL 184
            G+  + E+L+E GA+V+A DK G+T  
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             GRT LH AA+ G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 59/88 (67%)
Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
           V +L++ GADVN  +D G T LH AA +G L+IVE+L+  GA +N+ D  G T LH  A+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPL 184
            G+  + E+L+E GA+V+A DK G+T  
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             GRT LH AA+ G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 59/88 (67%)
Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
           V +L++ GADVN  +D G T LH AA +G L+IVE+L+  GA +N+ D  G T LH  A+
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPL 184
            G+  + E+L+E GA+V+A DK G+T  
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAF 117

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 61/91 (67%)
Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           G  P+H AA  G++ +V++LL  GADVN K+  GRT LH AA  G L++V+LL+  GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           N+KDK G T LH  A  G+  + +LL+E GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D +G  P+H AA   ++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           + G T LH AA  G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N+ D+ G T LH  A   +  + E+L++ GA+V+A D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 181 QTPLMNAVICYNKEF 195
            TPL  A +  + E 
Sbjct: 81  STPLHLAALFGHLEI 95

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL +   +   VNA D  G  P+H AA +G++ IVE+LL  GADVN   
Sbjct: 21  AARAGQDDEVRILTA---NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           + GRT LH AA    L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 70/134 (52%)
Query: 51  VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
           +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ 
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
           N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   + E L+  G
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 171 AEVDATDKAGQTPL 184
           A V   +K G+ P+
Sbjct: 129 ALVSICNKYGEMPV 142

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 70/134 (52%)
Query: 51  VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
           +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ 
Sbjct: 4   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
           N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   + E L+  G
Sbjct: 64  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 171 AEVDATDKAGQTPL 184
           A V   +K G+ P+
Sbjct: 124 ALVSICNKYGEMPV 137

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + + R+ LH AA  GH ++  +L  V   AN+ +   E+   P+  AA   ++  V+ L
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHML--VQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGN 159
           +  GA V+ K+  G T LH AA KG  ++V+ L+S G   +N +D  G T +       +
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGC 198
             L +LL+ +G++++  D      L  A       FSGC
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAA------FSGC 156

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA DE G  P++ A + G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             G T LH AA  G L+I E+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA  G    V +L++ GA +N+KD+ G T L+   + G+  + E+L++ GA+V+A D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 181 QTPLMNAVICYNKEFS 196
            TPL  A    + E +
Sbjct: 81  FTPLHLAAFIGHLEIA 96

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D+ G  P+H AA   ++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             G T LH  A  G L+IVE+L+  GA +N++DK G TA       GN  L E+L
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  GH    E+LL    S +    VD     P+H AAS G+  IVE+LL  GADVN
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHANIVEVLLKHGADVN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            K+    TALH+A      ++VELLI  GA ++++ K   TA       GN  L E+L
Sbjct: 95  AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 62  EILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
           E L+++    NV  +A D     P+H AA    V IV++LL  GADV+ K+ GG   LH 
Sbjct: 38  EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           A S G  ++ ELL+  GA +N+ D    T LH  AS     +C LL+  GA+    +  G
Sbjct: 98  ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG 157
Query: 181 Q-------TPLMNAVICYNKEFSGCS 199
           +       TP +   + Y  EF G S
Sbjct: 158 KSAVDMAPTPELRERLTY--EFKGHS 181

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 63/97 (64%)
Query: 79  EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           ++G  P+H+AA  G+   V+ LLSKGADVN ++  G T LH AA  G  +IV+LL+++GA
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
            +N++ K G T  H     G+  + +LL  +GA+V+A
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           VN   ++G +P+H AA  G   ++ +LL  GA+   +N      LH A  +G  ++V+ L
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
           +   AK N KD  G T L    S G+  L  LL++ GA ++A++  G T L  AVI
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 40  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
           IV++L+  G  +N  D  G T L   A  GN   C ++L+E GA+
Sbjct: 100 IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 143

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 22  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
           IV++L+  G  +N  D  G T L   A  GN   C ++L+E GA+
Sbjct: 82  IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 125

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 24  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
           IV++L+  G  +N  D  G T L   A  GN   C ++L+E GA+
Sbjct: 84  IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 127

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 18/163 (11%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  +  T   +AA  G  +++++ LS  + A+V N  D  G+     AA  G V  ++ L
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLS--KGADV-NECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 101 LSKGADVNLKND----------GGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCT 149
             +GA+VNL+            GG TAL  AA KG ++++++L+   GA +N+ D +G  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 150 AL-HRGASTGNS---ALCELLIEEGAEVDATDKAGQTPLMNAV 188
           AL H   S+ +S   A+  LL++ GA+V+   + G+TPL+ AV
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 18/163 (11%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  +  T   +AA  G  +++++ LS       VN  D  G+     AA  G V  ++ L
Sbjct: 88  RKKNGATPFILAAIAGSVKLLKLFLS---KGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
Query: 101 LSKGADVNLKND----------GGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCT 149
             +GA+VNL+            GG TAL  AA KG ++++++L+   GA +N+ D +G  
Sbjct: 145 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 204
Query: 150 AL-HRGASTGNS---ALCELLIEEGAEVDATDKAGQTPLMNAV 188
           AL H   S+ +S   A+  LL++ GA+V+   + G+TPL+ AV
Sbjct: 205 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
           D + T LH A   GH  +V  L+      +++   D EG + IH AA  G+ +IV  L++
Sbjct: 74  DLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKV-GCTALHRGASTGNS 160
           KG DV++ +  G T L +AA +   +    LL++    +N  DK    TALH     GN+
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 161 ALCELLIEEGAEVDATDKAGQTPL 184
            +  LL+E GA VDA +  G++ L
Sbjct: 191 TVISLLLEAGANVDAQNIKGESAL 214

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 30/173 (17%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  T LH A    + ++V+ L  V+  AN+ N  D EGW P+H+AAS G + I E L+
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFL--VENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLI 126
Query: 102 SKGADVNLKNDGGRTALHYAAS------------------KGWLKIVELLISRGAK--IN 141
           S+GA V   N  G T L  A                    +   K  E ++ R A+  +N
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLN 186
Query: 142 S-------KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
           S         K G TALH  A+ G + + +LLI+   +V+  D  G TPL  A
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           A S G  + V  L+ RGA IN  +  G TALH+     N  + + L+E GA ++  D  G
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 181 QTPLMNAVIC 190
             PL  A  C
Sbjct: 107 WIPLHAAASC 116

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+  +T LH+A     PE+ E LL       +    D  G  P+H A   G +  V +L
Sbjct: 38  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 94
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHR 153
                  +L       N  G T LH A+  G+L IVELL+S GA +N+++   G TALH 
Sbjct: 95  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 154
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTP 183
                N  L  LL++ GA+V+     G +P
Sbjct: 155 AVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+  +T LH+A     PE+ E LL       +    D  G  P+H A   G +  V +L
Sbjct: 41  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 97
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHR 153
                  +L       N  G T LH A+  G+L IVELL+S GA +N+++   G TALH 
Sbjct: 98  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTP 183
                N  L  LL++ GA+V+     G +P
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 48/80 (60%)
Query: 87  SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
            AA  G    V +L++ GADVN K+  G T LH AA +G L+IVE+L+  GA +N++DK 
Sbjct: 8   EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 147 GCTALHRGASTGNSALCELL 166
           G TA       GN  L E+L
Sbjct: 68  GKTAFDISIDNGNEDLAEIL 87

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 58/107 (54%)
Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           +  G   +H A+  G++  VE LL  G+D N+K+  G T LH A + G LK+VELL+   
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           A +N+      + LH  A  G+  + +LL+  GA  +A +  G  P+
Sbjct: 67  ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+  +RT L VA   G    ++ L+   E+ + +   D EG   +  A     + I E L
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKLV---ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           LSKG++VN K+  G+T L ++   G+ ++   L+  GA +N ++  G T L   +  G S
Sbjct: 88  LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            + + L+E GA++ A D  G T   +A I   +E
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQE 181

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%)
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167
           N ++   RT L  A   G    ++ L+    K+  KD  G TAL          + E L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 168 EEGAEVDATDKAGQTPLMNAVICYNKEFS 196
            +G+ V+  D +G+TPLM ++I    E S
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADV  K+  G T LH AA  G L++V+LL+  GA +N++DK G
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 148 CTALHRGASTGNSALCELL 166
            TA       GN  L E+L
Sbjct: 73  KTAFDISIDNGNEDLAEIL 91

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           N+VN  DE G+ P+  A++ G +  V  LL  GAD ++      +AL  A++ G+  IV 
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAEVDATDKAGQTPLMNAV-I 189
           LL+ R   IN  D  G T L   A  GN   C E L+  GA++     +G TP+  AV +
Sbjct: 87  LLLERDVDINIYDWNGGTPLLY-AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 190 CYNK 193
            Y K
Sbjct: 146 GYRK 149

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           N+VN  DE G+ P+  A++ G +  V  LL  GAD ++      +AL  A++ G+  IV 
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAEVDATDKAGQTPLMNAV-I 189
           LL+ R   IN  D  G T L   A  GN   C E L+  GA++     +G TP+  AV +
Sbjct: 87  LLLERDVDINIYDWNGGTPLLY-AVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 190 CYNK 193
            Y K
Sbjct: 146 GYRK 149

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
           G   +V+ ++ +  D +L ND G TALH A   G  +IV+ L+  G  +N+ D  G T L
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 152 HRGASTGNSALCELLIEEGAEVDA 175
           H  AS  N  +C+ L+E GA V A
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFA 131

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
           G   +V+ ++ +  D +L ND G TALH A   G  +IV+ L+  G  +N+ D  G T L
Sbjct: 48  GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 152 HRGASTGNSALCELLIEEGAEVDA 175
           H  AS  N  +C+ L+E GA V A
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFA 131

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 53/93 (56%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
           G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ +GA IN+ DK   T L
Sbjct: 13  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
                 G+ +  +LL+ +GA+       G T L
Sbjct: 73  LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
           G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ +GA IN+ DK   T L
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 152 HRGASTGNSALCELLIEEGAE 172
                 G+ +  +LL+ +GA+
Sbjct: 78  LSAVYEGHVSCVKLLLSKGAD 98

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
           LL  A      +V EIL    ++   V+ VD EG  P++ A    ++ I + L+ +GAD+
Sbjct: 9   LLEAANQRDTKKVKEIL---QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGNSALCELL 166
           NL+N    +   YA ++G  +I+  ++      +N  ++ G  AL   A  G+    +LL
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 167 IEEGAE-VDATDKAGQTPLMNAV 188
           +E+G E +D  +  G T L+ AV
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAV 148

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 45/79 (56%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G    V +L++ GADV  K+  G T LH AA  G L++V+LL+  GA + ++DK G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 148 CTALHRGASTGNSALCELL 166
            TA       GN  L E+L
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
           AA  G + +V+  + +  D +  N+ G TALH A       IV+ LI+ GA +NS D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS 200
            T LH  AS  ++ +C  L++ GA + AT  +           Y + ++ C++
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
           +V+  LL+  + A +   +D+ G   +H AA        + LL  GAD N +++ GRT L
Sbjct: 31  QVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 88
Query: 119 HYAASKGWLKIVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
           H A +   + + ++L+ +R   +N++   G T L   A      + E LI   A+++A D
Sbjct: 89  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD 148
Query: 178 KAGQTPLMNAVICYNKE 194
            +G+T L  A    N E
Sbjct: 149 NSGKTALHWAAAVNNTE 165

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
           DVN++++ G   LH AA +G L++VE L+   A  +  ++  G TA       G + +  
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
           L+   GA
Sbjct: 155 LMQANGA 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
           DVN++++ G   LH AA +G L++VE L+   A  +  ++  G TA       G + +  
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
           L+   GA
Sbjct: 155 LMQANGA 161

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINS 142
           P+H AA  GN++ +   L     VN  +  G TAL++A   G   IVE L ++   ++N 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 143 KDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
           ++K+G TALH  A  G + + +LL+ +GA  D
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
           DVN++++ G   LH AA +G L++VE L+   A  +  ++  G TA       G + +  
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
           L+   GA
Sbjct: 155 LMQANGA 161

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
           + A + +G   +H A +      V++LL +GAD++  +   GR+ L +A     L +V+L
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
           L+  GA +N++   G +ALH  +  G   L   L+  GA+    +    TPLM A
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
           DVN++++ G   LH AA +G L++VE L+   A  +  ++  G TA       G + +  
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
           L+   GA
Sbjct: 155 LMQANGA 161

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 88  AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           AA+ G+V  V  LL +     +  N  G+TAL      G   I   L+ +GA  N +D  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 67
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           G + +H  A TG     ++L+E GA+V+  D  G  P+  AV
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 88  AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           AA+ G+V  V  LL +     +  N  G+TAL      G   I   L+ +GA  N +D  
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 73
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           G + +H  A TG     ++L+E GA+V+  D  G  P+  AV
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 88  AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           AA+ G+V  V  LL +     +  N  G+TAL           +ELL  +GA  N +D  
Sbjct: 17  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELL-KQGASPNVQDAS 75
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           G + +H  A TG     ++L+E GA+V+A D  G  P+  A+
Sbjct: 76  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 88  AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           AA+ G+V  V  LL +     +  N  G+TAL           +ELL  +GA  N +D  
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELL-KQGASPNVQDAS 73
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           G + +H  A TG     ++L+E GA+V+A D  G  P+  A+
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 7/148 (4%)
Query: 42  NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           N  DRT    LH+AA+    +  + LL     AN+    D  G  P+H+A S     + +
Sbjct: 51  NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 107
Query: 99  MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +L+ ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+ 
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLM 185
            N     +L++ GA  D  +   +TPL 
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLF 195

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 14/97 (14%)
Query: 106 DVNLKNDGGRTALHYAA-SKGWLK------------IVELLISRGAKI-NSKDKVGCTAL 151
           DVN++   G T L  A+ S G L+            ++   I +GA + N  D+ G TAL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           H  A+   S   + L+E  A+ +  D  G+TPL  AV
Sbjct: 62  HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 42  NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           N  DRT    LH+AA     +  + LL     AN+    D  G  P+H+A S     + +
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 107
Query: 99  MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +L+ ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+ 
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLM 185
            N     +L++ GA  D  +   +TPL 
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLF 195

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 106 DVNLKNDGGRTALHYAA-SKGWLK------------IVELLISRGAKI-NSKDKVGCTAL 151
           DVN++   G T L  A+ S G L+            ++   I +GA + N  D+ G TAL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           H  A    S   + L+E  A+ +  D  G+TPL  AV
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 42  NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           N  DRT    LH+AA     +  + LL     AN+    D  G  P+H+A S     + +
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 75
Query: 99  MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +L+ ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+ 
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLM 185
            N     +L++ GA  D  +   +TPL 
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLF 163

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 42  NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           N  DRT    LH+AA     +  + LL     AN+    D  G  P+H+A S     + +
Sbjct: 52  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 108
Query: 99  MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +L+ ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+ 
Sbjct: 109 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 168
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLM 185
            N     +L++ GA  D  +   +TPL 
Sbjct: 169 NNVDAAVVLLKNGANKDMQNNREETPLF 196

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 104 GADVNLKNDGGRTALHYAA-SKGWLK------------IVELLISRGAKI-NSKDKVGCT 149
           G DVN++   G T L  A+ S G L+            ++   I +GA + N  D+ G T
Sbjct: 1   GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 150 ALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           ALH  A    S   + L+E  A+ +  D  G+TPL  AV
Sbjct: 61  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 42  NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           N  DRT    LH+AA     +  + LL     A +    D  G  P+H+A S     + +
Sbjct: 16  NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ---DNMGRTPLHAAVSADAQGVFQ 72
Query: 99  MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +LL ++  D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+ 
Sbjct: 73  ILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAV 132
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLM 185
            N     +L++ GA  D  +   +TPL 
Sbjct: 133 NNVDAAVVLLKNGANKDMQNNKEETPLF 160

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           P  +AA   +   +  LL    DV+  ++ GRTAL + A  G  K V LL   GA ++ +
Sbjct: 48  PWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 144 D-KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           D + G TALH  A      + E L+E GA+++  D+ G T L
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
           +A+VV+  +   W    +AA   +   +  LL    DV+  ++ GRTAL + A  G  K 
Sbjct: 37  AADVVSEYETPWW----TAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKC 91
Query: 130 VELLISRGAKINSKD-KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           V LL   GA ++ +D + G TALH  A      + E L+E GA+++  D+ G T L
Sbjct: 92  VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           L+ GADVN  N G    T L  A +   L   E L+  GA +N  D  G   LH     G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
           ++ L  L ++ GA++ A D  G+ PL  A+   N + 
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           L+ GADVN  N G    T L  A +   L   E L+  GA +N  D  G   LH     G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
           ++ L  L ++ GA++ A D  G+ PL  A+   N + 
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           L+ GADVN  N G    T L  A +   L   E L+  GA +N  D  G   LH     G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
           ++ L  L ++ GA++ A D  G+ PL  A+   N + 
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 91  IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
           +GN  I   LL +GA+ +LK+  G   +H AA  G+L  ++ L+   A +N +D  G   
Sbjct: 47  LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 151 LHRGASTGNSALCELLIEEGA 171
           LH  A  G+  + E L++  A
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTA 127

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE--EGWAPIHSAASIGNVTIVE 98
           R     T LH+AA   + E   +L+             E  EG   +H A    NV +V 
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 99  MLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            LL++GA V+ +  G             G   L +AA  G  +IV LLI  GA I ++D 
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152
Query: 146 VGCTALH 152
           +G T LH
Sbjct: 153 LGNTVLH 159

>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           E   P+H AA++ +  IV++LL  G D +  +D G TAL+YA   G  + V+L + +  +
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWR 120
Query: 140 INSKDKVGC-TALHRGASTGNSALCELLIEE 169
           +    K G  T+ +      + ++    + E
Sbjct: 121 LXFYGKTGWKTSFYHAVXLNDVSIVSYFLSE 151

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           W+P+H AA  G+   +  L+S+G  VN+      + LH A   G L  V++L+  GA++N
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 142 SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD----------KAGQTPLMNAVICY 191
                  T L     +G+     LL++ GA V              + G    +N++I Y
Sbjct: 64  GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAY 123

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH--SAASIGNVTIVEMLLS-- 102
           T LH + S  +  VV+ LL  D     V+  +  G++PI   + A++     +E +L   
Sbjct: 113 TALHYSVSHANFPVVQQLL--DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 103 KGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
           +  ++N K +  G+TAL  A S G + +V+ L++  A +N +D  G TAL      G+  
Sbjct: 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE 230
Query: 162 LCELLIE-EGAEVDATDKAGQTPLMNAV 188
           +  LL+     ++  TD+ G T LM A+
Sbjct: 231 IAGLLLAVPSCDISLTDRDGSTALMVAL 258

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           W+P+H AA  G+   +  L+S+G  VN+      + LH A   G L  V++L+  GA++N
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 142 SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD----------KAGQTPLMNAVICY 191
                  T L     +G+     LL++ GA V              + G    +N++I Y
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAY 179

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 79/194 (40%), Gaps = 55/194 (28%)
Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANV------VNAVDEEGWAPIHSAASIGNVTIVE 98
           +RT+LH  AS    E  E L+ V E+         VNA D +   P+  A       +V 
Sbjct: 125 NRTVLHWIASNSSAEKSEDLI-VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 99  MLLSKGADVNLKNDGGRTALHYAAS----------------KG-----------WLKIV- 130
            L   GAD  + N   R+ALH AA+                KG            L IV 
Sbjct: 184 YLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVA 243
Query: 131 -----------ELLISRGAKI--------NSKDKVGCTALHRGASTGNSALCELLI-EEG 170
                      +LL+ +GAK+        +S+   G TALH  A   N  + + L+ E+G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKG 303
Query: 171 AEVDATDKAGQTPL 184
           +  D  D+ G+TP+
Sbjct: 304 SNKDKQDEDGKTPI 317

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVEL 132
           + A + +G  P+H A    +  +V +L   GAD+N      GRT LH A       ++EL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           L+  GA   ++   G T L       N  L  LL   GA
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVEL 132
           + A + +G  P+H A    +  +V +L   GAD+N      GRT LH A       ++EL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           L+  GA   ++   G T L       N  L  LL   GA
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 57/110 (51%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           ++A   +G  P+  AA +    ++E L++  ADVN  +D G++ALH+AA+   +    +L
Sbjct: 8   LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 67
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
           +  GA  + ++    T L   A  G+    ++L++  A  D TD   + P
Sbjct: 68  LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 117

>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein Lebu_0176 From Leptotrichia Buccalis C-1013-B Length = 186

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN---LKNDGGRTALHYAASKGWLKIVE 131
           NA  E  +  + +AA +G       L  KG +     LK++     L     +   KI  
Sbjct: 2   NAXSE--YRTVSAAAXLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISX 59
Query: 132 LLISRGAKINSKDKVGCT---ALHRGAS---TGNSALCELLIEEGAEVDATDKAGQTPLM 185
            LI++GA I S+ K G T    L +G     TG + LC++ +E+GA++ A  K  +  + 
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119
Query: 186 NAVICY 191
             +  Y
Sbjct: 120 KNIFNY 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-61
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-53
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-60
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-56
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-42
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-59
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-49
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-43
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-28
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-59
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-55
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-51
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-48
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-36
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-58
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-47
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-58
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-53
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-43
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-58
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-47
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-58
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-48
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-46
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-57
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-55
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-47
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-57
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-47
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-44
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-57
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-54
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-48
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-38
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-56
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-54
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-50
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-41
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-56
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-54
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-56
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-56
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-55
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-55
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-55
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-55
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-54
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-46
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-45
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-55
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-54
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-54
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-53
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-44
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-54
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-52
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-42
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-54
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-48
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-48
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-46
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-43
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-54
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-51
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-50
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-46
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-54
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-53
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-51
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-45
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-45
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-40
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-53
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-50
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-44
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-39
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-53
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-45
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-41
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-52
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-51
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-37
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-35
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-52
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-47
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-47
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-43
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-51
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-51
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-43
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-41
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-51
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-46
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-44
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-27
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-51
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-50
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-43
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-50
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-44
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-50
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-49
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-39
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-38
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-50
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-49
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-46
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-40
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-50
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-41
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-49
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-46
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-32
2rfa_A	232	Transient receptor potential cation channel subfa	1e-49
2rfa_A	232	Transient receptor potential cation channel subfa	3e-48
2rfa_A	232	Transient receptor potential cation channel subfa	4e-43
2rfa_A	232	Transient receptor potential cation channel subfa	2e-23
2rfa_A	232	Transient receptor potential cation channel subfa	7e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-49
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-42
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-37
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-49
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-46
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-45
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-30
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-49
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-45
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-44
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-43
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-47
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-46
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-34
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-47
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-40
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-34
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-47
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-45
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-46
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-44
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-30
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-45
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-44
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-45
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-39
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-36
2etb_A	256	Transient receptor potential cation channel subfam	1e-42
2etb_A	256	Transient receptor potential cation channel subfam	1e-32
2etb_A	256	Transient receptor potential cation channel subfam	3e-31
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-39
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-34
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-30
2pnn_A	273	Transient receptor potential cation channel subfa	3e-38
2pnn_A	273	Transient receptor potential cation channel subfa	3e-35
2pnn_A	273	Transient receptor potential cation channel subfa	2e-26
2pnn_A	273	Transient receptor potential cation channel subfa	1e-22
2pnn_A	273	Transient receptor potential cation channel subfa	1e-13
2pnn_A	273	Transient receptor potential cation channel subfa	7e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-37
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-37
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-28
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-36
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-34
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-28
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-28
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-18
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-15
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-13

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  187 bits (477), Expect = 7e-61
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 2/153 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + +    +      G+   V + L    + N +N  D+ G++P+H A   G   +VEML+
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLD--NTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            +GA +N+ N G  T LH AAS G   IV+ L+   A IN+ ++ G   LH     G   
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           + E L+  GA V   +K G+ P+  A     + 
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKAPLREL 152

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  168 bits (428), Expect = 2e-53
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   + LH A   G   VVE+L+     A + N ++     P+H AAS G+  IV+ L
Sbjct: 35  GDDHGFSPLHWACREGRSAVVEMLIMRG--ARI-NVMNRGDDTPLHLAASHGHRDIVQKL 91

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L   AD+N  N+ G   LHYA   G  ++ E L++ GA ++  +K G   + +  +    
Sbjct: 92  LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE 151

Query: 161 ALCELLIEEGAEVDATD 177
            L E   + G  ++   
Sbjct: 152 LLRERAEKMGQNLNRIP 168

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  186 bits (475), Expect = 1e-60
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
           D   +H  A+ G  + ++  L      N+VN  DE G+ P+  A++ G +  V  LL  G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKG--DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE 164
           AD ++      +AL  A++ G+  IV LL+ R   IN  D  G T L       +    E
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 165 LLIEEGAEVDATDKAGQTPLMNAV 188
            L+  GA++     +G TP+  AV
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAV 143

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  175 bits (446), Expect = 3e-56
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            ++   T L  A++ G  E V  LL     A+  + + +E  + +  A++ G   IV +L
Sbjct: 32  PDERGFTPLIWASAFGEIETVRFLLEWG--ADP-HILAKERESALSLASTGGYTDIVGLL 88

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L +  D+N+ +  G T L YA     +K VE L++RGA + ++   G T +    + G  
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148

Query: 161 ALCELLIEEGAEVDATDKAGQTP 183
            + +++     ++  ++     P
Sbjct: 149 KVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  138 bits (350), Expect = 8e-42
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
               IH  A+ G +  ++  L KG + VN  ++ G T L +A++ G ++ V  L+  GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            +   K   +AL   ++ G + +  LL+E   +++  D  G TPL+ AV   + +
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.0 bits (248), Expect = 1e-26
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 113 GGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           G   ++H  A++G L  ++  + +G   +N  D+ G T L   ++ G       L+E GA
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 172 EVDATDKAGQTPLMNA 187
           +     K  ++ L  A
Sbjct: 61  DPHILAKERESALSLA 76

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  182 bits (465), Expect = 2e-59
 Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N +    L  AA  G  E V+ L +V +S N    ++     P+H AA    V++VE LL
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTV-QSVNC-RDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D    T LH  A+ G   
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           +C+LL++ GA+    ++ G TPL       + +
Sbjct: 123 ICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTD 154

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  157 bits (400), Expect = 2e-49
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LH AA      VVE LL     A+ V+A D+ G  P+H+A S G+  + E+L
Sbjct: 38  IEGRQSTPLHFAAGYNRVSVVEYLLQHG--AD-VHAKDKGGLVPLHNACSYGHYEVAELL 94

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           +  GA VN+ +    T LH AA+KG  +I +LL+  GA    K++ G T L      G++
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDT 153

Query: 161 ALCELLIEEGA 171
            + +LL  + A
Sbjct: 154 DIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  142 bits (360), Expect = 2e-43
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
            + E    +  AA  G+V  V+ L +    +         T LH+AA    + +VE L+ 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 136 RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            GA +++KDK G   LH   S G+  + ELL++ GA V+  D    TPL  A      E
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  103 bits (259), Expect = 2e-28
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSAL 162
           GA  N +       L  AA  G ++ V+ L +         +    T LH  A     ++
Sbjct: 1   GAMGNSE---ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            E L++ GA+V A DK G  PL NA    + E
Sbjct: 58  VEYLLQHGADVHAKDKGGLVPLHNACSYGHYE 89

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  182 bits (466), Expect = 9e-59
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +++  RT LH A S     V +IL+     A  ++A   +G  P+  AA +    ++E L
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGMLEDL 111

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           ++  ADVN  +D G++ALH+AA+   +    +L+  GA  + ++    T L   A  G+ 
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 171

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
              ++L++  A  D TD   + P   A    + +
Sbjct: 172 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 205

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  173 bits (442), Expect = 4e-55
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA     +  + LL     A+  N  D  G  P+H+A S     + ++L
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEAS--AD-ANIQDNMGRTPLHAAVSADAQGVFQIL 77

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           +   A D++ +   G T L  AA      ++E LI+  A +N+ D +G +ALH  A+  N
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                +L++ GA  D  +   +TPL  A    + E
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 172

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  164 bits (419), Expect = 1e-51
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
             P V+   +     A++ N  D  G   +H AA        + LL   AD N++++ GR
Sbjct: 2   DAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 59

Query: 116 TALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
           T LH A S     + ++LI   A  ++++   G T L   A      + E LI   A+V+
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119

Query: 175 ATDKAGQTPLMNAVICYNKE 194
           A D  G++ L  A    N +
Sbjct: 120 AVDDLGKSALHWAAAVNNVD 139

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  156 bits (396), Expect = 4e-48
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  D  T L +AA      ++E L++    A+V NAVD+ G + +H AA++ NV    +L
Sbjct: 88  RMHDGTTPLILAARLAVEGMLEDLINSH--ADV-NAVDDLGKSALHWAAAVNNVDAAVVL 144

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GA+ +++N+   T L  AA +G  +  ++L+   A  +  D +            + 
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 204

Query: 161 ALCELLIEEGA 171
            +  LL E   
Sbjct: 205 DIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (318), Expect = 2e-36
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  ++ LH AA+  + +   +LL     AN  +  +     P+  AA  G+    ++L
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNG--ANK-DMQNNREETPLFLAAREGSYETAKVL 177

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           L   A+ ++ +   R     A  +    IV LL       +         LH
Sbjct: 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS-------PQLH 222

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  181 bits (462), Expect = 2e-58
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 15/190 (7%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
             DK+         E   +     L         + R+  +RT L VA   G    ++ L
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFL--------RNYRDSYNRTPLMVACMLGMENAIDKL 54

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124
           +       +    D EG   +  A     + I E LLSKG++VN K+  G+T L ++   
Sbjct: 55  VENF--DKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF 111

Query: 125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           G+ ++   L+  GA +N ++  G T L   +  G S + + L+E GA++ A D  G T  
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE 171

Query: 185 MNAVICYNKE 194
            +A I   +E
Sbjct: 172 ASARIFGRQE 181

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  152 bits (388), Expect = 3e-47
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T L  A       + E LLS    +NV N  D  G  P+  +   G   +   L
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSKG--SNV-NTKDFSGKTPLMWSIIFGYSEMSYFL 120

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GA+VN +N  G T L  A+  G  +IV+ L+  GA I+++D  G TA       G  
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180

Query: 161 ALCELLIE 168
            + ++  E
Sbjct: 181 EVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 84.7 bits (211), Expect = 8e-21
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167
           +  +  G         K   + ++ L       N +D    T L      G     + L+
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 168 EEGAEVDATDKAGQTPLMNAVICYNKE 194
           E   +++  D  G T L+ AV      
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLG 82

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  179 bits (458), Expect = 4e-58
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 3/149 (2%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
              +H  A+ G    +   +  +    + N  DEEG+ P+  AA+ G + +VE LL  GA
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQE--NVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
           D  L   G  +AL  A SKG+  IV++L+  G  +N  D  G T L       +    ++
Sbjct: 61  DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120

Query: 166 LIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           L+E GA+      +G   +  AV    + 
Sbjct: 121 LLESGADPTIETDSGYNSMDLAVALGYRS 149

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  168 bits (428), Expect = 1e-53
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +++  T L  AA+ G   VVE LL     A+    + +   + +  A S G   IV+ML
Sbjct: 32  TDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADP-QLLGKGRESALSLACSKGYTDIVKML 88

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  G DVN  +  G T L YA     +K V++L+  GA    +   G  ++    + G  
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148

Query: 161 ALCELLIEEGAEVDATDK 178
           ++ +++     ++    K
Sbjct: 149 SVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  142 bits (362), Expect = 1e-43
 Identities = 30/114 (26%), Positives = 56/114 (49%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
               +H  A+ G +  +   + +   +N  ++ G T L +AA+ G + +VE L+  GA  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
               K   +AL    S G + + ++L++ G +V+  D  G TPL+ AV   + +
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK 116

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  102 bits (258), Expect = 5e-28
 Identities = 20/75 (26%), Positives = 35/75 (46%)

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
               ++H  A++G +  +   I +   IN  D+ G T L   A+ G  A+ E L++ GA+
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 173 VDATDKAGQTPLMNA 187
                K  ++ L  A
Sbjct: 62  PQLLGKGRESALSLA 76

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  178 bits (455), Expect = 6e-58
 Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D    L  AA  G  + V IL++    A      D  G +P+H AA  G+ +  E+LL  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANG--APF--TTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           G   + +    RT LH AAS+G   IVE+L+  GA +N+KD +  TALH      +  + 
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           ELLI+ GA+V    K  +T    ++   N++
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNED 147

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  151 bits (385), Expect = 2e-47
 Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +    + LH+AA  GH    E+LL      +  +A  +    P+H AAS G+  IVE+LL
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAG--VSR-DARTKVDRTPLHMAASEGHANIVEVLL 87

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GADVN K+    TALH+A      ++VELLI  GA ++++ K   TA       GN  
Sbjct: 88  KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED 147

Query: 162 LCELL 166
           L E+L
Sbjct: 148 LAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  114 bits (288), Expect = 1e-32
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R   DRT LH+AAS GH  +VE+LL     A+ VNA D      +H A    +  +VE+L
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHG--AD-VNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +  GADV+ ++   +TA   +   G   + E+L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  179 bits (456), Expect = 6e-58
 Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 3/153 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D    L  AA  G  + V IL++    A+V NA D  GW P+H AA  G++ IVE+LL
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANG--ADV-NAEDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GADVN  +  G T L  AA  G L+IVE+L+  GA +N+ D  G T LH  A  G+  
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           + E+L++ GA+V+A DK G+T    ++   N++
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  154 bits (393), Expect = 2e-48
 Identities = 58/128 (45%), Positives = 76/128 (59%), Gaps = 3/128 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA  GH E+VE+LL     A+V NAVD  G  P+  AA  G++ IVE+L
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNG--ADV-NAVDHAGMTPLRLAALFGHLEIVEVL 99

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GADVN  +  G T LH AA  G L+IVE+L+  GA +N++DK G TA       GN 
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159

Query: 161 ALCELLIE 168
            L E+L +
Sbjct: 160 DLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  149 bits (380), Expect = 2e-46
 Identities = 44/124 (35%), Positives = 68/124 (54%)

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++  +    +    +  AA  G    V +L++ GADVN ++  G T LH AA  G L+IV
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63

Query: 131 ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC 190
           E+L+  GA +N+ D  G T L   A  G+  + E+L++ GA+V+A D  G TPL  A + 
Sbjct: 64  EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123

Query: 191 YNKE 194
            + E
Sbjct: 124 GHLE 127

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 67.0 bits (165), Expect = 2e-14
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + +  T LH+AA  GH E+VE+LL     A+V NA D+ G      +   GN  + E+L
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNG--ADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165

Query: 101 LSK 103
              
Sbjct: 166 QKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 5/28 (17%), Positives = 15/28 (53%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVD 68
           ++   +T   ++   G+ ++ EIL  ++
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQKLN 169

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  180 bits (460), Expect = 1e-57
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 2/154 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T LH+AA  GH EVV+ LLS       VN  D+ GW P+  A    +V +V++L
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNG--QMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           LSKG+D+N++++     LH+AA  G + I E+L++    +++ +  G + LH  A     
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
               L +   ++V   +K G+TPL  A +     
Sbjct: 191 DCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  174 bits (443), Expect = 5e-55
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + + R+ LH AA  GH ++  +L+     AN ++   E+   P+  AA   ++  V+ L
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAG--AN-IDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGN 159
           +  GA V+ K+  G T LH AA KG  ++V+ L+S G   +N +D  G T +       +
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
             L +LL+ +G++++  D      L  A      +
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD 158

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  154 bits (393), Expect = 1e-47
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++D   T +  A    H ++V++LLS    +++ N  D E    +H AA  G V I E+L
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSKG--SDI-NIRDNEENICLHWAAFSGCVDIAEIL 163

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L+   D++  N  G + LH AA +     V L +SR + +  K+K G T L   +     
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223

Query: 161 ALCELLIEEGA 171
                + +   
Sbjct: 224 WSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  144 bits (366), Expect = 2e-43
 Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 2/125 (1%)

Query: 72  NV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++      +   +P+H+AA  G+V I  ML+  GA+++  ++  RT L  AA    L+ V
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 131 ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA-EVDATDKAGQTPLMNAVI 189
           + LI  GA ++ KD  G T LH  A  G+  + + L+  G  +V+  D  G TP++ A  
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120

Query: 190 CYNKE 194
             + +
Sbjct: 121 YKHVD 125

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.9 bits (175), Expect = 3e-15
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N    + LH+AA     + V + LS D  ++V    ++EG  P+  A+    V     +
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRD--SDV-TLKNKEGETPLQCASLNSQVWSALQM 229

Query: 101 LSKGAD 106
                D
Sbjct: 230 SKALQD 235

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  177 bits (451), Expect = 3e-57
 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 5/154 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +     L  AA+ G  E +  LL  +   NV NA +  G   +     +GN  I   LL
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNN--VNV-NAQNGFGRTALQ-VMKLGNPEIARRLL 57

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            +GA+ +LK+  G   +H AA  G+L  ++ L+   A +N +D  G   LH  A  G+  
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117

Query: 162 LCELLIEEGAE-VDATDKAGQTPLMNAVICYNKE 194
           + E L++  A  V   +  G T    A +    E
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  152 bits (386), Expect = 2e-47
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N   RT L      G+PE+   LL     AN  +  D  G+A IH AA  G +  ++ L
Sbjct: 34  QNGFGRTALQ-VMKLGNPEIARRLLLRG--ANP-DLKDRTGFAVIHDAARAGFLDTLQTL 89

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGN 159
           L   ADVN++++ G   LH AA +G L++VE L+   A  +  ++  G TA       G 
Sbjct: 90  LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

Query: 160 SALCELLIEEGA 171
           + +  L+   GA
Sbjct: 150 NEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  142 bits (362), Expect = 9e-44
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
           + E     + SAA+ G++  +  LL    +VN +N  GRTAL      G  +I   L+ R
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59

Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           GA  + KD+ G   +H  A  G     + L+E  A+V+  D  G  PL  A    +  
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  180 bits (459), Expect = 3e-57
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +++  RT LH A S     V +IL+     A  ++A   +G  P+  AA +    ++E L
Sbjct: 86  QDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGMLEDL 143

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           ++  ADVN  +D G++ALH+AA+   +    +L+  GA  + ++    T L   A  G+ 
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 203

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
              ++L++  A  D TD   + P   A    + +
Sbjct: 204 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 237

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  173 bits (440), Expect = 2e-54
 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 16/168 (9%)

Query: 41  RNDDDRTLLHVAASCG-------------HPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           R  D  T L +A+  G              P V+   +     A++ N  D  G   +H 
Sbjct: 6   RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG--ASLHNQTDRTGETALHL 63

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKV 146
           AA        + LL   AD N++++ GRT LH A S     + ++LI   A  ++++   
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           G T L   A      + E LI   A+V+A D  G++ L  A    N +
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  156 bits (397), Expect = 7e-48
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  D  T L +AA      ++E L++    A+V NAVD+ G + +H AA++ NV    +L
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSH--ADV-NAVDDLGKSALHWAAAVNNVDAAVVL 176

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GA+ +++N+   T L  AA +G  +  ++L+   A  +  D +            + 
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 236

Query: 161 ALCELLIEEGA 171
            +  LL  E  
Sbjct: 237 DIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  132 bits (335), Expect = 1e-38
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 15/136 (11%)

Query: 74  VNAVDEEGWAPIHSAASIGNVT-------------IVEMLLSKGADV-NLKNDGGRTALH 119
           VN    +G+ P+  A+  G                ++   + +GA + N  +  G TALH
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA-EVDATDK 178
            AA        + L+   A  N +D +G T LH   S     + ++LI   A ++DA   
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122

Query: 179 AGQTPLMNAVICYNKE 194
            G TPL+ A     + 
Sbjct: 123 DGTTPLILAARLAVEG 138

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  124 bits (314), Expect = 1e-35
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  ++ LH AA+  + +   +LL     AN  +  +     P+  AA  G+    ++L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNG--ANK-DMQNNREETPLFLAAREGSYETAKVL 209

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           L   A+ ++ +   R     A  +    IV LL       +  
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 99.5 bits (249), Expect = 6e-26
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 14/103 (13%)

Query: 106 DVNLKNDGGRTALHYAASKGW-------------LKIVELLISRGAKI-NSKDKVGCTAL 151
           DVN++   G T L  A+  G                ++   I +GA + N  D+ G TAL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           H  A    S   + L+E  A+ +  D  G+TPL  AV    + 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.0 bits (183), Expect = 2e-16
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+ + T L +AA  G  E  ++LL     AN  +  D     P   A    +  IV +L
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHF--ANR-DITDHMDRLPRDIAQERMHHDIVRLL 242

Query: 101 LSKGADVNLKN 111
             +    +  +
Sbjct: 243 DLEHHHHHHHH 253

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  177 bits (452), Expect = 1e-56
 Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 3/157 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

Query: 101 LSK--GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK     LHR AS G
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151

Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKE 194
           +  L ELL   G + V+  DK G TPL +A+   + +
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  171 bits (437), Expect = 3e-54
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   T  H+A S G+ EVV+ L       ++ N +  +G   +H A       + + L
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFL 126

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTGN 159
           +  GA V +K+   +  LH AAS G LK++ELL   G + +N +DK G T L    + G+
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186

Query: 160 SALCELLIEE-GAEVDATDKAGQTPLMNAV 188
                LL+E+ GAE D  D  G      A+
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  162 bits (413), Expect = 1e-50
 Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 9/155 (5%)

Query: 46  RTLLHVAASCGH-PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
              LH A       +V E+L S    + +    D++G  P+H + S     I   LLSK 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKP--SLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 105 ADVNLKN---DGGRTALHYAASKGWLKIVELLISR--GAKINSKDKVGCTALHRGASTGN 159
            +VNL +   D G T  H A S G L++V+ L  R     +N     G T LH       
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
             + + LIE GA V   DK  Q PL  A    + +
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  139 bits (353), Expect = 1e-41
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 12/168 (7%)

Query: 7   QTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVE 62
               D         A   G+    KSL  + L   L+   +   T LH+A      EV +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 63  ILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYA 121
            L+     A+V    D+    P+H AAS+G++ ++E+L   G + VN ++  G T L +A
Sbjct: 125 FLIENG--ASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181

Query: 122 ASKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSALCELLIE 168
            ++G      LL+ + GA+ +  D  G  A    A        +  + 
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV-ALNEQVK--KFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  126 bits (318), Expect = 2e-36
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 81  GWAPIHSAASIGNV-TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
              P+H A        + E+L SK + +  K+  GR  LH++ S    +I   L+S+   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 140 IN---SKDKVGCTALHRGASTGNSALCELLIE--EGAEVDATDKAGQTPLMNAVICYNKE 194
           +N     D  G T  H   S GN  + + L +     +++     G T L  AV     E
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 146 VGCTALHRGASTGNSAL-CELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           +    LH+           ELL  + + +   D+ G+ PL  +V     E
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE 50

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  177 bits (452), Expect = 2e-56
 Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 14/199 (7%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGH 57
           ++D  I +      L  A  T   S  + L    +    S    +   +T  H+A     
Sbjct: 38  ELD--IYNNLRQTPLHLAVITTLPSVVRLL----VTAGASPMALDRHGQTAAHLACEHRS 91

Query: 58  PEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGR 115
           P  +  LL       + + A + +G   +H A +      V++LL +GAD++  +   GR
Sbjct: 92  PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR 151

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
           + L +A     L +V+LL+  GA +N++   G +ALH  +  G   L   L+  GA+   
Sbjct: 152 SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211

Query: 176 TDKAGQTPLMNAVICYNKE 194
            +    TPLM A      +
Sbjct: 212 KNCHNDTPLMVARSRRVID 230

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  171 bits (437), Expect = 5e-54
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDES--ANVVNAVDEEGWAPIHSAASIGNVT 95
            +  ++D  T LH+A   G+   V  L+++ +      ++  +     P+H A      +
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPS 60

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK----INSKDKVGCTAL 151
           +V +L++ GA     +  G+TA H A        +  L+   A     + +++  G TAL
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 152 HRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICYNKE 194
           H   +T      +LL+E GA++DA D K+G++PL++AV   +  
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  154 bits (392), Expect = 3e-47
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 10/170 (5%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQ--QLLKSLSLRNDDDRTLLHVAASCGHPEVVE 62
             D+        A E    +  ++L          L  RN D  T LHVA +    E V+
Sbjct: 74  ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

Query: 63  ILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           +LL     A++ +AVD + G +P+  A    ++++V++LL  GA+VN +   G +ALH A
Sbjct: 134 LLLERG--ADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

Query: 122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           + +G L +V  L+  GA  + K+    T L    S     +        A
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  182 bits (464), Expect = 7e-56
 Identities = 66/195 (33%), Positives = 91/195 (46%), Gaps = 11/195 (5%)

Query: 4   DIDQTIKDKD--LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGHPE 59
                 +     L  A+  G     K+L    L +  S ++ N    T LH+AA  GH E
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
           V + LL     A V NA  ++   P+H AA IG+  +V++LL   A+ NL    G T LH
Sbjct: 62  VAKYLLQ--NKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 118

Query: 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA 179
            AA +G ++ V  L+ + A      K G T LH  A  G   + ELL+E  A  +A  K 
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178

Query: 180 GQTPLMNAVICYNKE 194
           G TPL  AV   N +
Sbjct: 179 GLTPLHVAVHHNNLD 193

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  181 bits (463), Expect = 7e-56
 Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA  GH E+V +LLS    AN  N  ++ G  P+H  A  G+V + ++L
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANG-NLGNKSGLTPLHLVAQEGHVPVADVL 297

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           +  G  V+     G T LH A+  G +K+V+ L+   A +N+K K+G + LH+ A  G++
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            +  LL++ GA  +     G TPL  A       
Sbjct: 358 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  181 bits (461), Expect = 2e-55
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              +  T LHVA    + ++V++LL      +  ++    G+ P+H AA    V +   L
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSP-HSPAWNGYTPLHIAAKQNQVEVARSL 231

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  G   N ++  G T LH AA +G  ++V LL+S+ A  N  +K G T LH  A  G+ 
Sbjct: 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 291

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            + ++LI+ G  VDAT + G TPL  A    N +
Sbjct: 292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 325

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  179 bits (458), Expect = 5e-55
 Identities = 55/154 (35%), Positives = 72/154 (46%), Gaps = 3/154 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +  DD+T LH AA  GH  +V++LL  +  AN  N     G  P+H AA  G+V  V  L
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENN--ANP-NLATTAGHTPLHIAAREGHVETVLAL 132

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L K A        G T LH AA  G +++ ELL+ R A  N+  K G T LH      N 
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            + +LL+  G    +    G TPL  A      E
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 226

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  179 bits (457), Expect = 6e-55
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              +  T LH+AA     EV   LL      +  NA   +G  P+H AA  G+  +V +L
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYG--GSA-NAESVQGVTPLHLAAQEGHAEMVALL 264

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           LSK A+ NL N  G T LH  A +G + + ++LI  G  +++  ++G T LH  +  GN 
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 324

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            L + L++  A+V+A  K G +PL  A    + +
Sbjct: 325 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  161 bits (411), Expect = 4e-48
 Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N    T LH+ A  GH  V ++L+       V +A    G+ P+H A+  GN+ +V+ L
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHG--VMV-DATTRMGYTPLHVASHYGNIKLVKFL 330

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L   ADVN K   G + LH AA +G   IV LL+  GA  N     G T L      G  
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390

Query: 161 ALCELL---IEEGAEVDATDKAGQTPL 184
           ++ ++L    +E + V  +DK   +  
Sbjct: 391 SVTDVLKVVTDETSFVLVSDKHRMSFP 417

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (326), Expect = 1e-35
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVA+  G+ ++V+ LL     A+V NA  + G++P+H AA  G+  IV +L
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQ--ADV-NAKTKLGYSPLHQAAQQGHTDIVTLL 363

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL---ISRGAKINSKDKVGCTALHRGAST 157
           L  GA  N  +  G T L  A   G++ + ++L       + +   DK   +        
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE----- 418

Query: 158 GNSALCELLIEEGAE 172
                 + +++   +
Sbjct: 419 ----TVDEILDVSED 429

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  122 bits (308), Expect = 4e-33
 Identities = 31/93 (33%), Positives = 45/93 (48%)

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
           S G       + G T LH A+  G L IV+ L+ RGA  N  +    T LH  A  G++ 
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           + + L++  A+V+A  K  QTPL  A    +  
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 94

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.0 bits (227), Expect = 8e-22
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 23/148 (15%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPE 59
            +D     +     L  A+  G+    K L + Q    ++ +     + LH AA  GH +
Sbjct: 303 MVD--ATTRMGYTPLHVASHYGNIKLVKFLLQHQA--DVNAKTKLGYSPLHQAAQQGHTD 358

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML---LSKGADVNLKNDGGRT 116
           +V +LL     A+  N V  +G  P+  A  +G +++ ++L     + + V + +    +
Sbjct: 359 IVTLLLKNG--ASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 415

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKD 144
                        V+ ++        + 
Sbjct: 416 FPE---------TVDEILDVSEDEGEEL 434

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  173 bits (442), Expect = 7e-55
 Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 5/155 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            D + T LH A   GH  +V  L+     A+  + +D EG + IH AA  G+ +IV  L+
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYG--ADP-SLIDGEGCSCIHLAAQFGHTSIVAYLI 129

Query: 102 SKGADVNLKNDGGRTALHYAASKG-WLKIVELLISRGAKINSKDKV-GCTALHRGASTGN 159
           +KG DV++ +  G T L +AA +   +    LL++    +N  DK    TALH     GN
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           + +  LL+E GA VDA +  G++ L  A    N  
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVW 224

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  171 bits (435), Expect = 8e-54
 Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 6/157 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNVTIVEM 99
            + ++ TLLH AA     ++V+  +S    A V + +  +    P+H A   G++++V  
Sbjct: 38  PDKENVTLLHWAAINNRIDLVKYYISKG--AIV-DQLGGDLNSTPLHWATRQGHLSMVVQ 94

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           L+  GAD +L +  G + +H AA  G   IV  LI++G  ++  D+ G T L   A   +
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154

Query: 160 SALC-ELLIEEGAEVDATDKA-GQTPLMNAVICYNKE 194
           S     LL+     V+  DK    T L  AV+  N  
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  151 bits (384), Expect = 4e-46
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEM 99
            + +  + +H+AA  GH  +V  L++     +V + +D+ G  P+  AA   +      +
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKG--QDV-DMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 100 LLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           LL+    VNL       TALH+A   G   ++ LL+  GA +++++  G +AL       
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221

Query: 159 NSALCELLIEEGAEVDATD 177
           N  +   L E        +
Sbjct: 222 NVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  147 bits (375), Expect = 9e-45
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +  +D+     I  A   G       L+  G DV   +    T LH+AA    + +V+  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 134 ISRGAKINSKDK-VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
           IS+GA ++     +  T LH     G+ ++   L++ GA+    D  G + +  A    +
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 193 KE 194
             
Sbjct: 122 TS 123

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  172 bits (438), Expect = 1e-54
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           ++  +   LL  A      +V EIL        V + VD EG  P++ A    ++ I + 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTT--YQV-DEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTG 158
           L+ +GAD+NL+N    +   YA ++G  +I+  ++      +N  ++ G  AL   A  G
Sbjct: 58  LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG 117

Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKE 194
           +    +LL+E+G  ++D  +  G T L+ AV      
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  164 bits (419), Expect = 6e-52
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + +  T L++A      E+ + L+     A++ N  +    +P   A + G   I+  +
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRG--ADI-NLQNSISDSPYLYAGAQGRTEILAYM 91

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTG 158
           L     D+N  N  G  AL  AA KG +  V+LL+  G   I+ ++  G TAL       
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151

Query: 159 NS-----ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                   + +LL+E GA+    D +G+T +  A      E
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  141 bits (357), Expect = 1e-42
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N    +    A + G  E++  +L        +N  +  G   +  AA  G++  V++L
Sbjct: 68  QNSISDSPYLYAGAQGRTEILAYMLKHA--TPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125

Query: 101 LSKG-ADVNLKNDGGRTALHYAA-----SKGWLKIVELLISRGAKINSKDKVGCTALHRG 154
           L  G  D++ +ND G TAL  A      ++ +  IV+LL+  GA  + KD  G TA+   
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185

Query: 155 ASTGNSALCELLIE 168
              G + + ++L +
Sbjct: 186 NQKGYTEISKILAQ 199

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  175 bits (447), Expect = 2e-54
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 41  RNDDDRTLLHVAASCGH-PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             +  +  L  AA  G+  +++ +L  ++   N  +A D     P+H AA    V IV++
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLN--VNC-HASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           LL  GADV+ K+ GG   LH A S G  ++ ELL+  GA +N+ D    T LH  AS   
Sbjct: 77  LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
             +C LL+  GA+    +  G++ +  A     +E
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  161 bits (409), Expect = 1e-48
 Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 24/171 (14%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA      +V++LL     A+V +A D+ G  P+H+A S G+  + E+L
Sbjct: 54  SDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADV-HAKDKGGLVPLHNACSYGHYEVTELL 110

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH-------- 152
           L  GA VN  +    T LH AASK  +++  LL+S GA     +  G +A+         
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR 170

Query: 153 -------------RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC 190
                        + A   + A  +  +          ++ +T L  AV  
Sbjct: 171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVAS 221

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  160 bits (407), Expect = 2e-48
 Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 24/189 (12%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           D T+ +      +  A             K               +LL  AA       V
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKG-------------HSLLQ-AAREADLAKV 194

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIG---NVTIVEMLLSKGADVNLKNDGGRTAL 118
           +  L+      +     +     +H A +        + E+LL KGA+VN KN    T L
Sbjct: 195 KKTLA---LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251

Query: 119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK 178
           H AA +    ++E+L   GAK+N+ D +G TALHR A  G+   C LL+  G++      
Sbjct: 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311

Query: 179 AGQTPLMNA 187
            G T     
Sbjct: 312 QGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  154 bits (392), Expect = 4e-46
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 18/158 (11%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           L N   ++ + +A +    E +                   G + +  AA   ++  V+ 
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEFK--------------GHSLLQ-AAREADLAKVKK 196

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGW---LKIVELLISRGAKINSKDKVGCTALHRGAS 156
            L+       +     TALH A +       ++ ELL+ +GA +N K+K   T LH  A 
Sbjct: 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256

Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
             ++ + E+L + GA+++A D  GQT L  A +  + +
Sbjct: 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQ 294

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  147 bits (374), Expect = 2e-43
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEMLLSKGADVNLKNDGGRTA 117
           +    L     SA       E     +  AA  GN   ++ +L     + +  +    T 
Sbjct: 5   KSALDLAD--PSAKA-VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
           LH AA    ++IV+LL+  GA +++KDK G   LH   S G+  + ELL++ GA V+A D
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121

Query: 178 KAGQTPLMNAVICYNKE 194
               TPL  A      E
Sbjct: 122 LWQFTPLHEAASKNRVE 138

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  129 bits (326), Expect = 2e-36
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 10/119 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N D  T LHVAA   H +V+E+L      A + NA+D  G   +H AA  G++    +L
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHG--AKM-NALDSLGQTALHRAALAGHLQTCRLL 299

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           LS G+D ++ +  G TA          + V+ ++S    + + D      L   +  G+
Sbjct: 300 LSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDY--RLLEASKAGD 351

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  173 bits (442), Expect = 2e-54
 Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 14/164 (8%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEML 100
             +D  LL  A      ++V+ LL     ANV N  +EE GW P+H+A  +    IVE+L
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGG--ANV-NFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GAD  L+   G T    AA  G +K+++L +S+GA +N  D  G TA    A  G  
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118

Query: 161 ALCELLIEEGAEVDATDK----------AGQTPLMNAVICYNKE 194
              + L + GA V+   K           G T LM+A    + E
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  167 bits (425), Expect = 1e-51
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 18/169 (10%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  +  T   +AA  G  +++++ LS    A+V N  D  G+     AA  G V  ++ L
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKG--ADV-NECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 101 LSKGADVNLKN----------DGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGCT 149
             +GA+VNL+            GG TAL  AA KG ++++++L+   GA +N+ D +G  
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 150 ALHRGASTGNSALC----ELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           AL     + + +       LL++ GA+V+   + G+TPL+ AV   +  
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  163 bits (414), Expect = 4e-50
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 13/167 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSV-------DESANVVNAVDEEGWAPIHSAASIGN 93
            +    T    AA  G  + ++ L           ++      + + G   +  AA  G+
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 94  VTIVEMLLSK-GADVNLKNDGGRTALHYAASKG----WLKIVELLISRGAKINSKDKVGC 148
           V ++++LL + GADVN  ++ GR AL +A           I  LL+  GA +N + + G 
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220

Query: 149 TALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKE 194
           T L       +  L + L+E E  E++ TD  G+T L+ AV    K+
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  153 bits (388), Expect = 3e-46
 Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 21/191 (10%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSL--------SKQQLLKSLSLRNDDDRTLLHV 51
           D++    D        +AA  G     K L         +++  +          T L  
Sbjct: 97  DVN--ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT----IVEMLLSKGADV 107
           AA  GH EV++ILL  +  A+V NA D  G   +  A    + +    I  +LL  GADV
Sbjct: 155 AAEKGHVEVLKILLD-EMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSALCELL 166
           N++ + G+T L  A  K  L +V+ L+ +   +IN  D  G TAL          + ELL
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

Query: 167 IEEGAEVDATD 177
            + GA  D  D
Sbjct: 273 CKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  125 bits (316), Expect = 2e-35
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 41  RNDDDRTLLHVAASCGH----PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI 96
            ++  R  L  A           +  +LL     A+V N   E G  P+  A    ++ +
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHG--ADV-NVRGERGKTPLILAVEKKHLGL 234

Query: 97  VEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           V+ LL +   ++N  +  G+TAL  A      KI ELL  RGA  +  D V
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  173 bits (440), Expect = 6e-54
 Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 4/153 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              D + +H AA  GH   +  L+S      V N +  +  +P+H A   G+++ V++LL
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQG--WAV-NIITADHVSPLHEACLGGHLSCVKILL 112

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GA VN       T L  A   G    V LL+  GA +  +     + +H  A  G+  
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVE 171

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
               LI  G  +D       TPL  A     + 
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 204

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  171 bits (435), Expect = 3e-53
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              D  + LH A   GH   V+ILL     A  VN V  +   P+ +A   G+   V +L
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILLKHG--AQ-VNGVTADWHTPLFNACVSGSWDCVNLL 144

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GA V  ++D   + +H AA +G ++ V  LI+ G  I+ K     T L+        
Sbjct: 145 LQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR 203

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           A  + L+E GA+V+   K   +PL   V   ++E
Sbjct: 204 ACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEE 236

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  167 bits (425), Expect = 1e-51
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 5/147 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              D  T L  A   G  + V +LL     A+V    + +  +PIH AA  G+V  V  L
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHG--ASV-QP-ESDLASPIHEAARRGHVECVNSL 176

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           ++ G +++ K     T L+ A        V+ L+  GA +N + K   + LH    T + 
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASE 235

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNA 187
            L  LL++ GA+  A +  G+ P+   
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  151 bits (384), Expect = 1e-45
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D  + +H AA  GH E V  L++     N+ +        P++ A        V+ LL
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYG--GNI-DHKISHLGTPLYLACENQQRACVKKLL 210

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GADVN +  G  + LH        ++  LL+  GA   +K+  G   +         A
Sbjct: 211 ESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLA 269

Query: 162 LCELLIEEGAEVDAT 176
               L  EGA +   
Sbjct: 270 -QLFLEREGASLPKP 283

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  151 bits (383), Expect = 2e-45
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 5/152 (3%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
           D  +  +  +   G  +   I L  +    + +AV    W+P+H AA  G+   +  L+S
Sbjct: 25  DGKQGGMDGSKPAGPRDFPGIRLLSN--PLMGDAVS--DWSPMHEAAIHGHQLSLRNLIS 80

Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
           +G  VN+      + LH A   G L  V++L+  GA++N       T L     +G+   
Sbjct: 81  QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC 140

Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
             LL++ GA V        +P+  A    + E
Sbjct: 141 VNLLLQHGASVQPESD-LASPIHEAARRGHVE 171

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  138 bits (349), Expect = 2e-40
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 15/149 (10%)

Query: 51  VAASCGHPEVVEILLSVDESANVVNAVDEE-----GWAPIHSAASIGNVTIVEMLLSKGA 105
           + +S  H      L+     ++ + ++D +     G  P       G       LLS   
Sbjct: 1   MGSSHHHHHHSSGLVP--RGSH-MASMDGKQGGMDGSKPAGPRDFPG-----IRLLSNPL 52

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
             +  +    + +H AA  G    +  LIS+G  +N       + LH     G+ +  ++
Sbjct: 53  MGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKI 110

Query: 166 LIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           L++ GA+V+       TPL NA +  + +
Sbjct: 111 LLKHGAQVNGVTADWHTPLFNACVSGSWD 139

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  170 bits (432), Expect = 1e-53
 Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 13/187 (6%)

Query: 4   DIDQTIKDKD--LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           DI       D   +K    G +    S    +       + +     LH AA  G+   +
Sbjct: 37  DIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE-------QAESIDNPLHEAAKRGNLSWL 89

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHY 120
              L       V N +D+ G   ++ A   G+  IVEML ++   ++N +N  G TALH 
Sbjct: 90  RECLD--NRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146

Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           AA KG+  IV+LL+++GA+ + ++     A     +   ++L +      A    ++   
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206

Query: 181 QTPLMNA 187
                ++
Sbjct: 207 YLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  162 bits (411), Expect = 2e-50
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 11/182 (6%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           +F+A  T +  T   L  ++    +    D   T      S G   ++         +N 
Sbjct: 16  VFRALYTFEPRTPDELYIEE--GDIIYITDMSDTNWWKGTSKGRTGLIP--------SNY 65

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           V    E    P+H AA  GN++ +   L     VN  +  G TAL++A   G   IVE+L
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

Query: 134 IS-RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
            +    ++N ++K+G TALH  A  G + + +LL+ +GA  D  +   +     A     
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC 185

Query: 193 KE 194
             
Sbjct: 186 AS 187

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  146 bits (370), Expect = 3e-44
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           +  +  A     P   + L    E  + +  + +          S G        L    
Sbjct: 13  QVKVFRALYTFEPRTPDELYI--EEGD-IIYITDMSDTNWWKGTSKGRT-----GLIPSN 64

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
            V  + +     LH AA +G L  +   +     +N  DK G TAL+     G+  + E+
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM 124

Query: 166 LI-EEGAEVDATDKAGQTPLMNAVICYNKE 194
           L  +   E++  +K G T L  A      +
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYAD 154

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  133 bits (338), Expect = 2e-39
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T L+ A   GH ++VE+L +   +  + N  ++ G   +H+AA  G   IV++L
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEMLFT-QPNIEL-NQQNKLGDTALHAAAWKGYADIVQLL 159

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           L+KGA  +L+N   + A   A +     +++      A     +              
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  116 bits (292), Expect = 1e-32
 Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 5/120 (4%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
               + G   +  A         + L  +  D+    D   T      SKG   ++    
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP--- 62

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                +  + +     LH  A  GN +     ++    V+  DKAG T L  A    +K+
Sbjct: 63  --SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD 120

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 83.1 bits (206), Expect = 6e-20
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N    T LH AA  G+ ++V++LL+    A   +  + E       A +    ++++  
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKG--ART-DLRNIEKKLAFDMATNAACASLLKKK 192

Query: 101 LSKGADVNLKNDGG---------RTALHY 120
               A   L N                H+
Sbjct: 193 QGTDAVRTLSNAEDYLDDEDSDLEHHHHH 221

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  166 bits (422), Expect = 6e-53
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
             L  AA+ G  + V  LL   E  +  +A++  G   +      G+  I   LL +GA 
Sbjct: 4   DRLSGAAARGDVQEVRRLLH-RELVHP-DALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            N+++  G + +H AA  G+L  +++L+  GA +N  D  G   +H     G++A+   L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKE 194
               +++   D  G TPL  A+    ++
Sbjct: 121 A-AESDLHRRDARGLTPLELALQRGAQD 147

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  146 bits (370), Expect = 4e-45
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 5/128 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N   +T L V    G   +   LL     A+  N  D  G +P+H AA  G +  +++L
Sbjct: 32  LNRFGKTALQVMMF-GSTAIALELLKQG--ASP-NVQDTSGTSPVHDAARTGFLDTLKVL 87

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           +  GADVN+ +  G   +H A  +G   +V  L +  + ++ +D  G T L      G  
Sbjct: 88  VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQ 146

Query: 161 ALCELLIE 168
            L ++L  
Sbjct: 147 DLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  135 bits (342), Expect = 8e-41
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 81  GWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
               +  AA+ G+V  V  LL  +    +  N  G+TAL      G   I   L+ +GA 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            N +D  G + +H  A TG     ++L+E GA+V+  D  G  P+  AV   +  
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  164 bits (419), Expect = 4e-52
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 8/154 (5%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +      +    GH         +   A+V      E   P  +AA   +   +  LL
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIA--ADV----VSEYETPWWTAARKADEQALSQLL 64

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNS 160
            +  DV+  ++ GRTAL + A  G  K V LL   GA ++ +D + G TALH  A     
Sbjct: 65  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            + E L+E GA+++  D+ G T L  A       
Sbjct: 124 EVVEALVELGADIEVEDERGLTALELAREILKTT 157

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  162 bits (413), Expect = 3e-51
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 5/137 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +  T    AA     + +  LL   E  +V +AVDE G   +   A +G+   V +L 
Sbjct: 41  VSEYETPWWTAARKADEQALSQLL---EDRDV-DAVDENGRTALLFVAGLGSDKCVRLLA 96

Query: 102 SKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
             GAD++ ++  GG TALH AA     ++VE L+  GA I  +D+ G TAL        +
Sbjct: 97  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT 156

Query: 161 ALCELLIEEGAEVDATD 177
                 ++ G  +    
Sbjct: 157 TPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  126 bits (320), Expect = 3e-37
 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 5/126 (3%)

Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
           +  + +    EG          G+           ADV  +     T    AA K   + 
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQA 59

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAV 188
           +  L+     +++ D+ G TAL   A  G+     LL E GA++D  D + G T L  A 
Sbjct: 60  LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118

Query: 189 ICYNKE 194
                E
Sbjct: 119 GYVRPE 124

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  122 bits (309), Expect = 1e-35
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 4/107 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            +++ RT L   A  G  + V +L      A++ +  D   G   +H AA      +VE 
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAG--ADL-DHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
           L+  GAD+ ++++ G TAL  A            +  G +I  +  +
Sbjct: 129 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI 175

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.8 bits (133), Expect = 9e-10
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 19/78 (24%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT------ 95
                T LH+AA    PEVVE L+ +   A++    DE G   +  A  I   T      
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELG--ADI-EVEDERGLTALELAREILKTTPKGNPM 163

Query: 96  ----------IVEMLLSK 103
                     ++ +L  +
Sbjct: 164 QFGRRIGLEKVINVLEGQ 181

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  168 bits (427), Expect = 6e-52
 Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 4/155 (2%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           + +   +    +    G    +E  +   +         ++G   +  A S G+   V  
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVV--KRKKT-KVKFDDGAVFLA-ACSSGDTEEVLR 58

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           LL +GAD+N  N  G TALH A     + +V+ L+  GA IN  D  G   LH  AS G 
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
             + E LI +GA V A +  G TPL  A     +E
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  156 bits (397), Expect = 3e-47
 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 9/154 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N +  T L +A      E+++  +         N    +  A       I      + L
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEV---------NRQGVDIEAARKEEERIMLRDARQWL 185

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
            S   +       G TALH AA+KG+ ++++LLI     +N KD  G T LH  A  G  
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE 245

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
             C +L+E   +++A +K GQT    A       
Sbjct: 246 EACRILVENLCDMEAVNKVGQTAFDVADEDILGY 279

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  155 bits (394), Expect = 7e-47
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 4/151 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             DD  +   A S G  E V  LL     A++ N  + +G   +H A    NV +V+ L+
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERG--ADI-NYANVDGLTALHQACIDDNVDMVKFLV 93

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             GA++N  ++ G   LH AAS G+L I E LIS+GA + + +  G T L          
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

Query: 162 LCELLIEE-GAEVDATDKAGQTPLMNAVICY 191
           L +  +   G +++A  K  +  ++     +
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQW 184

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  144 bits (367), Expect = 7e-43
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 15/177 (8%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
                + +    L  A E       ++         ++ +  D              +  
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNE--------VNRQGVDIEAARKEEERIMLRDAR 182

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           + L S     N      + G   +H AA+ G   ++++L+    DVN+K+  G T LH A
Sbjct: 183 QWLNSGH--IND-VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239

Query: 122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK 178
           A  G  +   +L+     + + +KVG TA           L EL  ++        +
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  130 bits (330), Expect = 2e-37
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 1/121 (0%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +   D +          IG+ T +E  + K     +K D G      A S G  + V  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
           + RGA IN  +  G TALH+     N  + + L+E GA ++  D  G  PL  A  C   
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119

Query: 194 E 194
           +
Sbjct: 120 D 120

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 65.2 bits (160), Expect = 5e-13
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D  T LH AA  G  E   IL+      ++  AV++ G      A       + E+ 
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILVENL--CDM-EAVNKVGQTAFDVADEDILGYLEELQ 284

Query: 101 LSKGADVNLKNDG 113
             +    + K + 
Sbjct: 285 KKQNLLHSEKREK 297

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  165 bits (420), Expect = 1e-51
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N     LL  ++  G  ++V+ ++      +  +  ++EG   +H+A   G+  IV+ L+
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEV--DDP-SLPNDEGITALHNAVCAGHTEIVKFLV 90

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK---DKVGCTALHRGASTG 158
             G +VN  +  G T LH AAS   +++ + L+  GA + +    D             G
Sbjct: 91  QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150

Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            +   + L     ++   +K     L +     + E
Sbjct: 151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  164 bits (418), Expect = 2e-51
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
              +  L         +     ++      V    +    A +  ++  G   +V+ ++ 
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHG--MRV-KF-NPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
           +  D +L ND G TALH A   G  +IV+ L+  G  +N+ D  G T LH  AS  N  +
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118

Query: 163 CELLIEEGAEVDATDKAGQ---TPLMNAVICYNKE 194
           C+ L+E GA V A   +           +     +
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ 153

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  143 bits (362), Expect = 7e-43
 Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            ND+  T LH A   GH E+V+ L+      N VNA D +GW P+H AAS  NV + + L
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFG--VN-VNAADSDGWTPLHCAASCNNVQVCKFL 122

Query: 101 LSKGADVNLKNDGG---RTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           +  GA V                   +G+ +  + L     K+   +K    AL      
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182

Query: 158 GNSALCELLIEEGAEVDATDKA--GQTPLMNAVIC 190
            +    EL ++EG  +    +    +     A + 
Sbjct: 183 NDD---ELPMKEGDCMTIIHREDEDEIEWWWARLN 214

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  138 bits (349), Expect = 6e-41
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 1/117 (0%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           +  G   +               ++ G  V   N      L  ++ +G   +V+ +I   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
              +  +  G TALH     G++ + + L++ G  V+A D  G TPL  A  C N +
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ 117

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  105 bits (263), Expect = 4e-28
 Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 20/144 (13%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + D  T LH AASC + +V + L+    +   +   D +  A        G     + L
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
                 + + N G   AL     +      EL +  G  +        T +HR       
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQN---DDELPMKEGDCM--------TIIHRE------ 201

Query: 161 ALCELLIEEGAEVDATDKAGQTPL 184
              +    E       DK G  P 
Sbjct: 202 ---DEDEIEWWWARLNDKEGYVPR 222

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  168 bits (428), Expect = 3e-51
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 12/166 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN---VTIV 97
            N  +R+ LH AA+     ++  +L+  +    +  +D  G   +   A       V   
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA 254

Query: 98  EMLLSKGADVNL--------KNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGC 148
           ++L+ KGA V+         +   GRTALHYAA    + IV+ L+  +G+  + +D+ G 
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK 314

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           T +   A  G   +   LI++GA V+A D    T    A    +  
Sbjct: 315 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 360

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  156 bits (397), Expect = 1e-46
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 16/165 (9%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              +    LH  A+ G   + E +    ES N+++         +H  AS  +    E L
Sbjct: 90  PEPESPIKLHTEAA-GSYAITEPITR--ESVNIID--PRHNRTVLHWIASNSSAEKSEDL 144

Query: 101 L--------SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           +        + GADVN  +    T L  A      ++V  L+  GA     +K   +ALH
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALH 204

Query: 153 RGASTGNSALCELLIE---EGAEVDATDKAGQTPLMNAVICYNKE 194
           + A+  +  +   ++       +++  D+ G T LM       ++
Sbjct: 205 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 249

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  149 bits (378), Expect = 6e-44
 Identities = 38/182 (20%), Positives = 78/182 (42%), Gaps = 18/182 (9%)

Query: 9   IKDKD----LFKAAETGDSSTFKSL-SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           I +K     L +AA   D      + +  +L   +   + +  T L + A     + V  
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

Query: 64  ---LLSVDESANV-------VNAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKND 112
              L+     A V        ++   +G   +H AA + N+ IV+ L+  KG++ + +++
Sbjct: 254 AKLLVEKG--AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
            G+T +  AA +G +++V  LI +GA + + D    TA     +  +  + ++      E
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

Query: 173 VD 174
            +
Sbjct: 372 RE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  104 bits (262), Expect = 6e-27
 Identities = 13/120 (10%), Positives = 29/120 (24%), Gaps = 11/120 (9%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           +         +  A+  G +             N                G   + +   
Sbjct: 31  HQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDFLGDFNH 81

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           +        +      LH   + G+ A+ E +  E   +    +  +T L       + E
Sbjct: 82  TNLQIPTEPEPESPIKLHT-EAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAE 139

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.1 bits (175), Expect = 6e-15
 Identities = 11/87 (12%), Positives = 20/87 (22%), Gaps = 9/87 (10%)

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            K    +      + +L  A+  G++K            N           +G   GN  
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDF 75

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAV 188
           L +            +      L    
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTEA 102

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  165 bits (421), Expect = 4e-51
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 4/154 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +         +      E             +  A + +G  P+H A    +  +V +L 
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWR--LQL-EAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 102 SKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
             GAD+N      GRT LH A       ++ELL+  GA   ++   G T L       N 
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            L  LL   GA          +P  ++    + +
Sbjct: 239 ILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSD 272

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  162 bits (413), Expect = 5e-50
 Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 14/171 (8%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
                +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD------------- 144
           E L + GA V +   GG TALH A          +L+                       
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 145 KVGCTALHRGASTGNSAL-CELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                     +             +   +++A +  G TPL  AVI  + E
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  145 bits (368), Expect = 3e-43
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            N D  T LHVA      E+V +L      A++ N  +   G  P+H A      +++E+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAG--ADL-NKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           LL  GAD   +  GGRT L  A  +    +  LL + GA          +      S  +
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270

Query: 160 SALCELLIE 168
           S   +   E
Sbjct: 271 SDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  134 bits (341), Expect = 3e-39
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
           V   V E+G   +H A    +   ++ LL   A    ++L+ND G+TALH AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           VE L + GA +   ++ G TALH            +L++                
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  108 bits (271), Expect = 6e-29
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
               RT LH+A       V+E+LL     A+   A    G  P+ SA    N  +  +L 
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAG--ADP-TARMYGGRTPLGSALLRPNPILARLLR 245

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           + GA          +    + S       +      
Sbjct: 246 AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  158 bits (402), Expect = 2e-50
 Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 3/128 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL     A+V NA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAG--ADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           GADVN K+  GRT LH AA  G L++V+LL+  GA +N+KDK G T LH  A  G+  + 
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117

Query: 164 ELLIEEGA 171
           +LL+E GA
Sbjct: 118 KLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  142 bits (362), Expect = 3e-44
 Identities = 54/114 (47%), Positives = 75/114 (65%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           G  P+H AA  G++ +V++LL  GADVN K+  GRT LH AA  G L++V+LL+  GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           N+KDK G T LH  A  G+  + +LL+E GA+V+A DK G+TPL  A    + E
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  123 bits (312), Expect = 1e-36
 Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 3/98 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ + RT LH+AA  GH EVV++LL     A+ VNA D+ G  P+H AA  G++ +V++L
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAG--AD-VNAKDKNGRTPLHLAARNGHLEVVKLL 87

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           L  GADVN K+  GRT LH AA  G L++V+LL+  GA
Sbjct: 88  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  162 bits (412), Expect = 2e-50
 Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 14/198 (7%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGHPEVVE 62
            ++      L  A  T      ++L    L       LR+    T LH+A   G    V 
Sbjct: 40  FQNNLQQTPLHLAVITNQPEIAEAL----LGAGCDPELRDFRGNTPLHLACEQGCLASVG 95

Query: 63  ILLSV---DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTAL 118
           +L          +++ A +  G   +H A+  G + IVE+L+S GADVN +    GRTAL
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155

Query: 119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK 178
           H A       +V LL+  GA +N     G +         ++ + + L +   E      
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215

Query: 179 AGQTPLMNAVICYNKEFS 196
             +            EF+
Sbjct: 216 ESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  160 bits (406), Expect = 2e-49
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 14/164 (8%)

Query: 42  NDDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
            +D  + LH+A          EV+  +      A + N  +     P+H A       I 
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDL--AFL-NFQNNLQQTPLHLAVITNQPEIA 61

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA------KINSKDKVGCTAL 151
           E LL  G D  L++  G T LH A  +G L  V +L            + + +  G T L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 152 HRGASTGNSALCELLIEEGAEVDATDKA-GQTPLMNAVICYNKE 194
           H  +  G   + ELL+  GA+V+A +   G+T L  AV   N +
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  132 bits (334), Expect = 9e-39
 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 76  AVDEEGWAPIHSAASIGNVT----IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
            + E+G + +H A           ++  +    A +N +N+  +T LH A      +I E
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE------VDATDKAGQTPLM 185
            L+  G     +D  G T LH     G  A   +L +          + AT+  G T L 
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 186 NAVICYNKE 194
            A I     
Sbjct: 123 LASIHGYLG 131

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  131 bits (332), Expect = 2e-38
 Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 12/156 (7%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSL----SKQQLLKSLSLRNDDDRTLLHVAASCGH 57
           D  ++D      L  A E G  ++   L    +   L   L   N +  T LH+A+  G+
Sbjct: 70  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

Query: 58  PEVVEILLSVDESANVVNAVDE-EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
             +VE+L+S+   A+V NA +   G   +H A  + N  +V +LL  GADVN     G +
Sbjct: 130 LGIVELLVSLG--ADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
                  +   +I + L     +             
Sbjct: 187 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 91.1 bits (227), Expect = 7e-23
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             + RT LH+A    +P++V +LL     A+V N V  +G++P        +  I + L 
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCG--ADV-NRVTYQGYSPYQLTWGRPSTRIQQQLG 204

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVE 131
               +             Y     + +  E
Sbjct: 205 QLTLENLQMLPESEDEESYDTESEFTEFTE 234

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  164 bits (418), Expect = 7e-50
 Identities = 24/169 (14%), Positives = 60/169 (35%), Gaps = 15/169 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESAN--VVNAVDEEGWAPIHSAASIGNVTIVE 98
           ++  D T L  A    + E +++++    S +   ++  +++G + +H A  I    +  
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-------------INSKDK 145
             +  G DVN++++     L+ +     + + + L+ +                +     
Sbjct: 229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV 288

Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           V    +   A      + +LL E+  EV  +   G    +         
Sbjct: 289 VWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPA 337

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  162 bits (412), Expect = 7e-49
 Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 28/197 (14%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
                    +  A     +    +L        +    +  +    +   C   EV EI 
Sbjct: 79  HSLWHGQKPIHLAVMANKTDLVVAL--------VEGAKERGQMPESLLNECDEREVNEIG 130

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGN--VTIVEMLLSKGADVNLKNDGGRTALHYAA 122
                     +    +G   +H    +G   + ++++L+  GA    K+    T L  A 
Sbjct: 131 ---------SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAM 181

Query: 123 SKGWLKIVELLISR-----GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
                + ++L++         +++  +K G + LH         +    +E G +V+  D
Sbjct: 182 EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED 241

Query: 178 KAGQTPLMNAVICYNKE 194
                PL  +V      
Sbjct: 242 NEHTVPLYLSVRAAMVL 258

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  156 bits (396), Expect = 2e-46
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 25/204 (12%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKS---LSLRNDDDRTLLHVAASCG 56
                 KDK     L +A E  +      +      KS   L   N    + LH A    
Sbjct: 165 SPT--AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN 222

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND---- 112
             +V    + +    +V N  D E   P++ +     V + + LL K     ++      
Sbjct: 223 WEDVAMRFVEMG--IDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279

Query: 113 ---------GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
                         +  AA     ++++LL  +  ++      G     +       A+ 
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 164 ELLIEEGAEVDATDKAGQTPLMNA 187
            + +   A V    ++       +
Sbjct: 340 RMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  140 bits (354), Expect = 3e-40
 Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 29/199 (14%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGH 57
            +++   D +    +  AA  G +   + L    +    S +++N    T LH+A   G 
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRL----IETGVSPTIQNRFGCTALHLACKFGC 65

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117
            +  + L SV       +     G  PIH A       +V  L+    +       G+  
Sbjct: 66  VDTAKYLASVG--EV-HSLWH--GQKPIHLAVMANKTDLVVALVEGAKER------GQMP 114

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL--CELLIEEGAEVDA 175
                     ++ E+        + K   G TALH     G   L   ++L++ GA   A
Sbjct: 115 ESLLNECDEREVNEIG------SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168

Query: 176 TDKAGQTPLMNAVICYNKE 194
            DKA +TPLM A+   N+E
Sbjct: 169 KDKADETPLMRAMEFRNRE 187

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  110 bits (277), Expect = 3e-29
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
           M      +    +D     +H AA KG    V  LI  G     +++ GCTALH     G
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                + L   G         GQ P+  AV+    +
Sbjct: 65  CVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTD 98

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  160 bits (408), Expect = 9e-50
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 8/154 (5%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +      +    GH         +  +A+V      E   P  +AA   +   +  LL
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYI--AADV----VSEYETPWWTAARKADEQALSQLL 65

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNS 160
            +  DV+  ++ GRTAL + A  G  K V LL   GA ++ +D + G TALH  A     
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            + E L+E GA+++  D+ G T L  A       
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTT 158

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  138 bits (349), Expect = 7e-41
 Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 28/171 (16%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            +++ RT L   A  G  + V +L      A++ +  D   G   +H AA      +VE 
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAG--ADL-DHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV------------- 146
           L+  GAD+ ++++ G TAL  A            +  G +I  +  +             
Sbjct: 130 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEV 189

Query: 147 ---------GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
                    G    +            +     AE  A D   +  L  AV
Sbjct: 190 DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDY--EDGLEYAV 238

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  119 bits (300), Expect = 2e-33
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
           + +    EG          G+           ADV  +     T    AA K   + +  
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQ 63

Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KAGQTPLMNAVICY 191
           L+     +++ D+ G TAL   A  G+     LL E GA++D  D + G T L  A    
Sbjct: 64  LLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122

Query: 192 NKE 194
             E
Sbjct: 123 RPE 125

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  110 bits (277), Expect = 3e-30
 Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 27/139 (19%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
                T LH+AA    PEVVE L+ +   A++    DE G   +  A  I   T     +
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELG--ADI-EVEDERGLTALELAREILKTTPKGNPM 164

Query: 102 SKGADVNLKN---------------------DG-GRTALHYAASKGWLKIVELLISRGAK 139
             G  + L+                       G G+   +    K       +     A+
Sbjct: 165 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

Query: 140 INSKDKVGCTALHRGASTG 158
             +KD      L    +  
Sbjct: 225 DVAKDY--EDGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 9/81 (11%), Positives = 17/81 (20%), Gaps = 22/81 (27%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
           G                          +     G          G+S          A+V
Sbjct: 1   GEVNKIIG-------------------SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV 41

Query: 174 DATDKAGQTPLMNAVICYNKE 194
            +     +TP   A    +++
Sbjct: 42  VSE---YETPWWTAARKADEQ 59

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 5/86 (5%), Positives = 16/86 (18%), Gaps = 38/86 (44%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            +    + + ++       +   +                                    
Sbjct: 194 EKRGKGKDVEYLVRWKDGGDCEWV------------------------------------ 217

Query: 100 LLSKGADVNLKNDGGRTALHYAASKG 125
                A+   K+      L YA ++ 
Sbjct: 218 KGVHVAEDVAKD--YEDGLEYAVAES 241

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  157 bits (399), Expect = 1e-49
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N    TLLH+A+  G    VE LL     ++  N  D  GW P+H A + G++ +VE+L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNG--SDP-NVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L   A VN       + LH AA  G + IV+LL+S GA  N+ +  G   +         
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122

Query: 161 ALCELLIEEGA 171
           +L  L  +  +
Sbjct: 123 SLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  149 bits (379), Expect = 1e-46
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 2/124 (1%)

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
            +     +  G   +H A+  G++  VE LL  G+D N+K+  G T LH A + G LK+V
Sbjct: 2   IDP--FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 131 ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC 190
           ELL+   A +N+      + LH  A  G+  + +LL+  GA  +A +  G  P+      
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119

Query: 191 YNKE 194
             K 
Sbjct: 120 SMKS 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  112 bits (283), Expect = 3e-32
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           G D    +  G T LH A+ KG +  VE L+  G+  N KD  G T LH   + G+  + 
Sbjct: 1   GIDPFTNHR-GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           ELL++  A V+ T     +PL +A    + +
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVD 90

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  160 bits (406), Expect = 1e-49
 Identities = 47/179 (26%), Positives = 69/179 (38%), Gaps = 25/179 (13%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS--VDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           R     T LH+AA   + E   +L+    +     + +   EG   +H A    NV +V 
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92

Query: 99  MLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            LL++GA V+ +  G             G   L +AA  G  +IV LLI  GA I ++D 
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152

Query: 146 VGCTALHRGASTGN----SALCELLIEEGAEVDA------TDKAGQTPLMNAVICYNKE 194
           +G T LH      N      +  LL+               +  G TP   A +  N  
Sbjct: 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV 211

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  156 bits (398), Expect = 3e-48
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 20/167 (11%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           + L +AA     + +  LL   E   V +     G   +H AA   N+    +L+    +
Sbjct: 5   SPLLLAAKENDVQALSKLL-KFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 107 V-----NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-------------VGC 148
           +       +   G+TALH A     + +V  L++RGA ++++                G 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
             L   A  G+  +  LLIE GA++ A D  G T L   ++  NK F
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTF 169

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 92.7 bits (231), Expect = 2e-23
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 114 GRTALHYAASKGWLKIV-ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
             + L  AA +  ++ + +LL   G +++ +  +G TALH  A   N     +L+E   E
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 173 V-----DATDKAGQTPLMNAVICYNKE 194
           +      +    GQT L  AVI  N  
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVN 89

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  156 bits (398), Expect = 2e-49
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +     L  AA+ G  E V  LL     AN  NA +  G  PI      G+  + E+LL
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAG--ANP-NAPNSYGRRPIQVMMM-GSARVAELLL 64

Query: 102 SKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
             GA+ N  +    T  +H AA +G+L  + +L   GA+++ +D  G   +      G+ 
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR 124

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNA 187
            +   L         ++ A        
Sbjct: 125 DVARYLRAAAGGTRGSNHARIDAAEGP 151

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  139 bits (353), Expect = 2e-42
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 2/116 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
             +  E     + +AA+ G V  V  LL  GA+ N  N  GR  +      G  ++ ELL
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELL 63

Query: 134 ISRGAKINSKDKVGCT-ALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           +  GA+ N  D    T  +H  A  G      +L   GA +D  D  G+ P+  A 
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  127 bits (321), Expect = 1e-37
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNVTIVEM 99
            N   R  + V    G   V E+LL     A   N  D      P+H AA  G +  + +
Sbjct: 41  PNSYGRRPIQVMMM-GSARVAELLLLHG--AEP-NCADPATLTRPVHDAAREGFLDTLVV 96

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           L   GA +++++  GR  +  A   G   +   L +        +     A  
Sbjct: 97  LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 87.9 bits (219), Expect = 2e-22
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 41  RNDDDRTL-LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            +    T  +H AA  G  + + +L      A + +  D  G  P+  A  +G+  +   
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAG--ARL-DVRDAWGRLPVDLAEELGHRDVARY 129

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           L +           G       A++G   I +
Sbjct: 130 LRAAAGGTR-----GSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 35/88 (39%)

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           +   A  +++       L  AA++G ++ V  L+  GA                      
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGA---------------------- 36

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAV 188
                        +A +  G+ P+   +
Sbjct: 37  -----------NPNAPNSYGRRPIQVMM 53

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  158 bits (403), Expect = 3e-49
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 6/154 (3%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           +   LL  AA  G  EVV+  +      +  +  +EEG   +H+A    N +IV+ L++ 
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEM--ND-PSQPNEEGITALHNAICGANYSIVDFLITA 76

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNSAL 162
           GA+VN  +  G T LH AAS     I   L+  GA I +     G TA  +         
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA 136

Query: 163 --CELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                L +    +   +      L +    +  E
Sbjct: 137 DCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE 170

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  151 bits (384), Expect = 3e-46
 Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 7/156 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N++  T LH A    +  +V+ L++    AN VN+ D  GW P+H AAS  +  I   L+
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAG--AN-VNSPDSHGWTPLHCAASCNDTVICMALV 107

Query: 102 SKGADVNLKND-GGRTALHYAAS--KGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
             GA +       G TA        +G+      L      +   +     AL    S  
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWD-YSAE 166

Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                     E   V   D   +T    A +   + 
Sbjct: 167 FGDELSFREGESVTVLRRDGPEETDWWWAALHGQEG 202

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  148 bits (376), Expect = 4e-45
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 1/133 (0%)

Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
           +  +L    S              +  AA  G + +V+  + +  D +  N+ G TALH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD-KA 179
           A       IV+ LI+ GA +NS D  G T LH  AS  ++ +C  L++ GA + AT    
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 180 GQTPLMNAVICYN 192
           G T          
Sbjct: 121 GATAFEKCDPYRE 133

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  118 bits (297), Expect = 3e-33
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 97  VEMLLSKGADVNLKNDG---GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHR 153
           +  +L K                 L  AA  G L++V+  +      +  ++ G TALH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                N ++ + LI  GA V++ D  G TPL  A  C +  
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTV 101

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  109 bits (275), Expect = 6e-30
 Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 7/122 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASI--GNVTIV 97
            +    T LH AASC    +   L+     A +  A    +G            G     
Sbjct: 83  PDSHGWTPLHCAASCNDTVICMALVQHG--AAI-FATTLSDGATAFEKCDPYREGYADCA 139

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
             L      + L N G   AL   +++     +         +  +D    T     A  
Sbjct: 140 TYLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGESVTVLRRDGPEETDWWWAALH 198

Query: 158 GN 159
           G 
Sbjct: 199 GQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 77.7 bits (192), Expect = 6e-18
 Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 7/114 (6%)

Query: 42  NDDDRTLLHVAASC--GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             D  T          G+ +    L  V++S   +  ++      +   ++      +  
Sbjct: 118 LSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSA-EFGDELSF 173

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVE-LLISRGAKINSKDKVGCTALH 152
              +   V  ++    T   +AA  G    V         ++  +        H
Sbjct: 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  160 bits (407), Expect = 4e-49
 Identities = 30/155 (19%), Positives = 66/155 (42%), Gaps = 7/155 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    +  + A +  +  +V  LL+    A   N ++     P+H AA++ +  IV++L
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLN--AGALK-NLLE--NEFPLHQAATLEDTKIVKIL 81

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG-CTALHRGASTGN 159
           L  G D +  +D G TAL+YA   G ++ V+L + +  ++    K G  T+ +      +
Sbjct: 82  LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141

Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            ++    + E            + +   +   + +
Sbjct: 142 VSIVSYFLSEIP-STFDLAILLSCIHITIKNGHVD 175

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  151 bits (384), Expect = 1e-45
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
            L  +       + ++  LS   S +     D  G +  + A +  NV +V  LL+ GA 
Sbjct: 3   DLSRIN--TWKSKQLKSFLS---SKDT-FKADVHGHSASYYAIADNNVRLVCTLLNAGAL 56

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
            NL        LH AA+    KIV++L+  G   +  D  G TAL+    +GN    +L 
Sbjct: 57  KNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF 114

Query: 167 IEEGAEVDATDKAG-QTPLMNAVICYNKE 194
           +++   +    K G +T   +AV+  +  
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYHAVMLNDVS 143

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  148 bits (377), Expect = 1e-44
 Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 12/144 (8%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
               +T  + A       +V   LS  E  +          + IH     G+V ++ +LL
Sbjct: 126 KTGWKTSFYHAVMLNDVSIVSYFLS--EIPS--TFDLAILLSCIHITIKNGHVDMMILLL 181

Query: 102 SKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
                 N  N       +  A     +++++ L      I        +A        ++
Sbjct: 182 DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDA 234

Query: 161 ALCELLIEEGAEVDATDKAGQTPL 184
            + +++IE+  E  +        +
Sbjct: 235 EIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  145 bits (369), Expect = 2e-43
 Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 13/156 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA-PIHSAASIGNVTIVEM 99
            +D   T L+ A   G+ + V++ +  +    +     + GW    + A  + +V+IV  
Sbjct: 91  FDDKGNTALYYAVDSGNMQTVKLFVKKN--WRL-MFYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCT-ALHRGASTG 158
            LS+            + +H     G + ++ LL+      N+ + +     +       
Sbjct: 148 FLSEIPSTFDLAIL-LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206

Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           +  + + L +    +        +  +  V+  + E
Sbjct: 207 DIEMLQALFKYDINIY-------SANLENVLLDDAE 235

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  119 bits (302), Expect = 2e-33
 Identities = 14/113 (12%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP-IHSAASIGNVTIVEM 99
                 + +H+    GH +++ +LL      +  N  +   + P I  A    ++ +++ 
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLLDYM--TST-NTNNSLLFIPDIKLAIDNKDIEMLQA 213

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           L     ++        +A          +I +++I +  +  S        + 
Sbjct: 214 LFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 11/106 (10%), Positives = 30/106 (28%), Gaps = 12/106 (11%)

Query: 41  RNDDDRT-LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            N       + +A      E+++ L   D   N+  + +            + +  I +M
Sbjct: 190 NNSLLFIPDIKLAIDNKDIEMLQALFKYD--INI-YSAN-------LENVLLDDAEIAKM 239

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           ++ K  +    +      +        +      +     +N   K
Sbjct: 240 IIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRL-MYVNCVKK 284

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  151 bits (384), Expect = 2e-47
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 3/125 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D    L  AA  G  + V IL++    A+V NA DE G  P++ A + G++ IVE+LL  
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANG--ADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           GADVN  +  G T LH AA  G L+I E+L+  GA +N++DK G TA       GN  L 
Sbjct: 70  GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129

Query: 164 ELLIE 168
           E+L +
Sbjct: 130 EILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  147 bits (375), Expect = 5e-46
 Identities = 42/124 (33%), Positives = 72/124 (58%)

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++  +    +    +  AA  G    V +L++ GADVN K++ G T L+ A + G L+IV
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV 63

Query: 131 ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC 190
           E+L+  GA +N+ D +G T LH  A  G+  + E+L++ GA+V+A DK G+T    ++  
Sbjct: 64  EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN 123

Query: 191 YNKE 194
            N++
Sbjct: 124 GNED 127

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  117 bits (297), Expect = 3e-34
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +++   T L++A + GH E+VE+LL     A+ VNAVD  G+ P+H AA IG++ I E+L
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNG--AD-VNAVDAIGFTPLHLAAFIGHLEIAEVL 99

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           L  GADVN ++  G+TA   +   G   + E+L  
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  153 bits (388), Expect = 5e-47
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              +  + ++A S    E+ E +L+    +      D++    +H A S G+  IVE LL
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADK--SLA-TRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             G  VN K+D G + LH AAS G  +IV+ L+ +GA +N+ ++ GCT LH  AS     
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           +  +L+E GA  DA D    T +  A    N +
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  136 bits (344), Expect = 2e-40
 Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 3/154 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + D RT LH A S GH E+VE LL +     V N  D+ GW+P+H AAS G   IV+ L
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLG--VPV-NDKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD    TA+HR A+ GN 
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            +  +L+   A  +  D  G TPL  A      E
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  121 bits (305), Expect = 2e-34
 Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 3/147 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++D   + LH+AAS G  E+V+ LL        VNAV++ G  P+H AAS     I  ML
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GA+ + K+    TA+H AA+KG LK+V +L+   A  N +D  G T LH        
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNA 187
              + L+ +GA +   +K  +TPL  A
Sbjct: 186 EEAKFLVTQGASIYIENKEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  110 bits (277), Expect = 2e-30
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 13/175 (7%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPE 59
            ++   KD      L  AA  G     K+L  +     ++  N +  T LH AAS    E
Sbjct: 65  PVN--DKDDAGWSPLHIAASAGXDEIVKALLVKG--AHVNAVNQNGCTPLHYAASKNRHE 120

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
           +  +LL    +    +A D      +H AA+ GN+ +V +LL   A  N+++  G T LH
Sbjct: 121 IAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177

Query: 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
            A  +  ++  + L+++GA I  ++K   T L    + G   L    + EG E  
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQ--VAKGGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 99.2 bits (247), Expect = 5e-26
 Identities = 21/85 (24%), Positives = 36/85 (42%)

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE 169
                    + A S    ++ E +++  +     D+   TALH   S G++ + E L++ 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 170 GAEVDATDKAGQTPLMNAVICYNKE 194
           G  V+  D AG +PL  A      E
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDE 87

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 2   DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           + D         + +AA  G+      L   +   S ++++ +  T LH+A      E  
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYK--ASTNIQDTEGNTPLHLACDEERVEEA 188

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
           + L++   S   +   ++E   P+  A   G + ++   L++G + ++
Sbjct: 189 KFLVTQGAS---IYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  149 bits (380), Expect = 8e-47
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                   L  AA+ G  E V  LL     A+  NA++  G  PI      G+  + E+L
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAG--ADP-NALNRFGRRPIQVMMM-GSAQVAELL 63

Query: 101 LSKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
           L  GA+ N  +    T  +H AA +G+L  + +L   GA+++  D  G   +      G+
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123

Query: 160 SALCELLIEEGA 171
             +   L     
Sbjct: 124 RDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  144 bits (367), Expect = 8e-45
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           ++ +     A + +AA+ G V  V  LL  GAD N  N  GR  +      G  ++ ELL
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELL 63

Query: 134 ISRGAKINSKDKVGCT-ALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
           +  GA+ N  D    T  +H  A  G      +L   GA +D  D  G+ P+  A
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  110 bits (278), Expect = 2e-31
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
              +++        L  AA++G ++ V  L+  GA  N+ ++ G   +      G++ + 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVA 60

Query: 164 ELLIEEGAEVDATDKAGQT-PLMNA 187
           ELL+  GAE +  D A  T P+ +A
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDA 85

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 71.3 bits (176), Expect = 3e-16
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 41  RNDDDRTL-LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            +    T  +H AA  G  + + +L      A + +  D  G  P+  A   G+  I   
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAG--ARL-DVCDAWGRLPVDLAEEQGHRDIARY 129

Query: 100 LLSKGAD 106
           L +   D
Sbjct: 130 LHAATGD 136

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  147 bits (374), Expect = 3e-46
 Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 3/111 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D  T LH AA  GH E V+ LLS    A+V NA  ++G  P+H AA  G+  IV++LL
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKG--ADV-NARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
           +KGADVN ++  G T  H A   G  +IV+LL ++GA +N++        H
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  143 bits (364), Expect = 1e-44
 Identities = 41/107 (38%), Positives = 63/107 (58%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
            ++G  P+H+AA  G+   V+ LLSKGADVN ++  G T LH AA  G  +IV+LL+++G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
           A +N++ K G T  H     G+  + +LL  +GA+V+A         
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  107 bits (271), Expect = 1e-30
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           G      +  G T LH AA  G  + V+ L+S+GA +N++ K G T LH  A  G++ + 
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           +LL+ +GA+V+A  K G TP   A    + E
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHE 89

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 99.4 bits (249), Expect = 3e-27
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+ D  T LH+AA  GH E+V++LL+    A+V NA  ++G  P H A   G+  IV++L
Sbjct: 38  RSKDGNTPLHLAAKNGHAEIVKLLLAKG--ADV-NARSKDGNTPEHLAKKNGHHEIVKLL 94

Query: 101 LSKGADVNLKNDGGRTALHY 120
            +KGADVN ++ G     H+
Sbjct: 95  DAKGADVNARSWGSSHHHHH 114

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  144 bits (367), Expect = 4e-45
 Identities = 36/112 (32%), Positives = 54/112 (48%)

Query: 76  AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
            +          A   G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 136 RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
           +GA IN+ DK   T L      G+ +  +LL+ +GA+       G T     
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  143 bits (363), Expect = 2e-44
 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
                     A   G  + V+  ++     +V N   E G  P+H AA  G + I+E LL
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKG--EDV-NRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
            KGAD+N  +    T L  A  +G +  V+LL+S+GA    K   G TA     +    A
Sbjct: 61  LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120

Query: 162 LCE 164
           L +
Sbjct: 121 LLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  110 bits (278), Expect = 1e-31
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
             +  R  LH AA CG  E++E LL     A+ +NA D+    P+ SA   G+V+ V++L
Sbjct: 36  TLEGGRKPLHYAADCGQLEILEFLLLKG--AD-INAPDKHHITPLLSAVYEGHVSCVKLL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           LSKGAD  +K   G TA     ++    +++
Sbjct: 93  LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 99.4 bits (249), Expect = 3e-27
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE 169
                     +A   G L  V+  +++G  +N   + G   LH  A  G   + E L+ +
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 170 GAEVDATDKAGQTPLMNAVICYNKE 194
           GA+++A DK   TPL++AV   +  
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVS 87

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  146 bits (371), Expect = 7e-45
 Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 13/164 (7%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
            +   +  AA  G  E    L                 +  + +        I   L++K
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 104 GADVNLKNDGGRTALHYAASKG------WLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           GAD+  +   G T        G        ++ ++ + +GA I +  K     + +    
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 158 GNSALCE-------LLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                 E       +  + G ++   DK G T L     C    
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  131 bits (332), Expect = 5e-39
 Identities = 25/188 (13%), Positives = 60/188 (31%), Gaps = 27/188 (14%)

Query: 10  KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD--RTLLHVA----ASCGHPEVVEI 63
           + + +  AA  G    F      +L +      +      +L+            ++   
Sbjct: 6   EYRTVSAAAMLGTYEDFL-----ELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGN------VTIVEMLLSKGADVNLKNDGGRTA 117
           L+  ++ A++  +  +EG          G         + ++ L KGAD+       +  
Sbjct: 61  LI--NKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV 117

Query: 118 LHYAASKGWLKIVE-------LLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
           +       ++   E       +    G ++  KDK G TAL            +++ +  
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

Query: 171 AEVDATDK 178
            + +  + 
Sbjct: 178 KKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  125 bits (315), Expect = 2e-36
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG---GRTALHYAASKGWLKIVE 131
           NA+ E  +  + +AA +G       L  KG +              L     +   KI  
Sbjct: 2   NAMSE--YRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 132 LLISRGAKINSKDKVGCTALHRGASTGN------SALCELLIEEGAEVDATDKAGQTPLM 185
            LI++GA I S+ K G T        G       + LC++ +E+GA++ A  K  +  + 
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 186 NAVICYNKEFSGC 198
             +  Y  + +  
Sbjct: 120 KNIFNYFVDENEM 132

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  143 bits (361), Expect = 1e-42
 Identities = 48/230 (20%), Positives = 73/230 (31%), Gaps = 49/230 (21%)

Query: 14  LFKAAETGDSSTFKSL------SKQQLLKSLSLRNDDDRTLLHVAA---SCGHPEVVEIL 64
           LF     G       L      + + L  S        +T L  A      G    +  L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 65  LSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG--- 113
           L +D+ +                +G + +H A    ++  V++L+  GADV+L+  G   
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 114 ----------GRTALHYAASKGWLKIVELLISRG---AKINSKDKVGCTALHRGA----- 155
                     G   L  AA      +V  L+      A + + D +G T LH        
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN 185

Query: 156 STGNSAL-----------CELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           S  NSAL              L       + ++  G TPL  A      E
Sbjct: 186 SPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE 235

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  117 bits (294), Expect = 1e-32
 Identities = 41/185 (22%), Positives = 60/185 (32%), Gaps = 35/185 (18%)

Query: 45  DRTLLHVAASCGHPEVVEILL-----SVDESANVVNAVDEEGWAPIHSAA---SIGNVTI 96
           DR  L    S G PE +  LL     +     +        G   +  A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 97  VEMLLSKG-----------ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD- 144
           +  LL              A    +   G +ALH A  K  L+ V+LL+  GA ++ +  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 145 ------------KVGCTALHRGASTGNSALCELLIEEG---AEVDATDKAGQTPLMNAVI 189
                         G   L   A T    +   L+E     A ++ATD  G T L   V+
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 190 CYNKE 194
             +  
Sbjct: 182 IADNS 186

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  113 bits (285), Expect = 3e-31
 Identities = 27/169 (15%), Positives = 44/169 (26%), Gaps = 29/169 (17%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESAN------VVNAVDEEGWAPIHSAAS 90
                 + LH+A      + V++L+     V   A               G  P+  AA 
Sbjct: 86  EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145

Query: 91  IGNVTIVEMLLSKG---ADVNLKNDGGRTAL----------------HYAASKGWLKIVE 131
                +V  LL      A +   +  G T L                      G L++  
Sbjct: 146 TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA 205

Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
            L          +  G T L   A  G   +   +++      A     
Sbjct: 206 RLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  134 bits (340), Expect = 2e-39
 Identities = 49/235 (20%), Positives = 73/235 (31%), Gaps = 54/235 (22%)

Query: 12  KDLFKAAETGDSSTFKSLSKQQLLKSL--------SLRNDDDRTLLHVAA---SCGHPEV 60
             LF     G     + L     L +                +T L  A    S G  + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLS--FLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 61  VEILLSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           + ILL + E               V   G   +H A        VE+L+ KGADV+ +  
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 113 G--------------GRTALHYAASKGWLKIVELLISRG---AKINSKDKVGCTALHRGA 155
           G              G   L  AA      IV  L   G   A +  +D  G T LH   
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 156 STGN---------SALCELLIEEGAEVDAT-------DKAGQTPLMNAVICYNKE 194
           +  +         + + +LL+ + A++          +  G +PLM A       
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG 239

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  120 bits (303), Expect = 7e-34
 Identities = 37/188 (19%), Positives = 60/188 (31%), Gaps = 42/188 (22%)

Query: 45  DRTLLHVAASCG----HPEVVEILLSVDESANVVNAVDEE----GWAPIHSAA---SIGN 93
           +R +L    S G       ++  LL+      +    +      G   +  A    S G 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLT--HKKRL-TDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 94  VTIVEMLLSKGAD-----------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
              + +LL                       G+TALH A  +     VELL+ +GA +++
Sbjct: 62  NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA 121

Query: 143 KDKV--------------GCTALHRGASTGNSALCELLIEEG---AEVDATDKAGQTPLM 185
           + +               G   L   A T    +   L E G   A++   D  G T L 
Sbjct: 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLH 181

Query: 186 NAVICYNK 193
             V   + 
Sbjct: 182 ALVAIADN 189

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  112 bits (281), Expect = 1e-30
 Identities = 36/171 (21%), Positives = 55/171 (32%), Gaps = 30/171 (17%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESAN-------VVNAVDEEGWAPIHSAA 89
                +T LH+A        VE+L+     V   A                G  P+  AA
Sbjct: 89  VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148

Query: 90  SIGNVTIVEMLLSKG---ADVNLKNDGGRTALHYAA---------SKGWLKIVELLISRG 137
                 IV  L   G   AD+  ++  G T LH            +K   K+ +LL+ + 
Sbjct: 149 CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208

Query: 138 AKINSK-------DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ 181
           AK+          +  G + L   A TG   + + +I       A      
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  132 bits (333), Expect = 3e-38
 Identities = 50/242 (20%), Positives = 79/242 (32%), Gaps = 56/242 (23%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD-------RTLLHVA---A 53
             D+      +F A    +    +SL    L +S     D +       +T L  A    
Sbjct: 11  LYDRRS----IFDAVAQSNCQELESL-LPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65

Query: 54  SCGHPEVVEILLSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
             G  + + +LL V    +               +G   +H A    N+T+V +L+  GA
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 106 DVNLKNDG--------------GRTALHYAASKGWLKIVELLISRG---AKINSKDKVGC 148
           DV    +G              G   L  AA    L IV+ L+      A I+++D VG 
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185

Query: 149 TALHRGASTGNSALCE----------------LLIEEGAEVDATDKAGQTPLMNAVICYN 192
           T LH      ++ +                   L       + T++ G TPL  A     
Sbjct: 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

Query: 193 KE 194
             
Sbjct: 246 IG 247

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  124 bits (313), Expect = 3e-35
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 36/189 (19%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDES-----ANVVNAVDEEGWAPIHSAASI---GN 93
              DR  +  A +  + + +E LL   +       +      E G   +  A      G 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 94  VTIVEMLLSKGAD-----------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
              + +LL                       G+TALH A  +  + +V LL+  GA + +
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 143 KDK--------------VGCTALHRGASTGNSALCELLIEEG---AEVDATDKAGQTPLM 185
                             G   L   A T   A+ + L++     A++ A D  G T L 
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189

Query: 186 NAVICYNKE 194
             V   +  
Sbjct: 190 ALVEVADNT 198

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  101 bits (253), Expect = 2e-26
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 23/130 (17%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE------- 98
              L +AA      +V+ LL        ++A D  G   +H+   + + T+         
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 99  --MLLSKGADVN-------LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCT 149
              +L  GA ++       + N  G T L  AAS G + ++  ++ R             
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPE 261

Query: 150 ALHRGASTGN 159
             H  A   +
Sbjct: 262 CRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 34/156 (21%), Positives = 44/156 (28%), Gaps = 36/156 (23%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLL-------SKGADVNLK-NDGGRTALHYA---AS 123
                     I  A +  N   +E LL        +  D   K  + G+T L  A     
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66

Query: 124 KGWLKIVELLISRGAKI-----------NSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
            G    + LL+    K                  G TALH      N  L  LL+E GA+
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126

Query: 173 VDATDK--------------AGQTPLMNAVICYNKE 194
           V A                  G+ PL  A       
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 22/115 (19%)

Query: 102 SKGADVNLKNDGGRTALHYAASKG-------WLKIVELLISRGAKINSKD-KVGCTALHR 153
           S  A         R ++  A ++         L  ++    R      KD + G T L +
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 154 ---GASTGNSALCELLIEEGAEVDAT-----------DKAGQTPLMNAVICYNKE 194
                  G +    LL++   + D+               GQT L  A+   N  
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMT 115

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 28/106 (26%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSL--------------SLRNDDDRT 47
           D + +D      L    E  D++   +     +   +               + N    T
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235

Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN 93
            L +AAS G   V+  +L  +   +             H+AA   +
Sbjct: 236 PLALAASSGKIGVLAYILQRE--IH--------EPECRHAAAHHHH 271

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  123 bits (311), Expect = 7e-37
 Identities = 44/91 (48%), Positives = 61/91 (67%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           G  P+H AA  G++ +V++LL  GADVN K+  GRT LH AA  G L++V+LL+  GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           N+KDK G T LH  A  G+  + +LL+E GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  122 bits (310), Expect = 8e-37
 Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 3/95 (3%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL     A+V NA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA--GADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           GADVN K+  GRT LH AA  G L++V+LL+  GA
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  101 bits (254), Expect = 2e-28
 Identities = 38/74 (51%), Positives = 51/74 (68%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
           GRT LH AA  G L++V+LL+  GA +N+KDK G T LH  A  G+  + +LL+E GA+V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 174 DATDKAGQTPLMNA 187
           +A DK G+TPL  A
Sbjct: 62  NAKDKNGRTPLHLA 75

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  122 bits (309), Expect = 2e-36
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
            +S  H      L+     +++      +    +  AA  G    V +L++ GADV  K+
Sbjct: 1   GSSHHHHHHSSGLVPRG--SHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54

Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             G T LH AA  G L++V+LL+  GA + ++DK G TA       GN  L E+L
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  116 bits (294), Expect = 3e-34
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
            +S  +      L+ +G+ +          L  AA  G    V +L++ GA + +KDK G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            T LH  A  G+  + +LL+E GA+V A DK G+T    ++   N++
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNED 104

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 99.6 bits (249), Expect = 1e-27
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D    L  AA  G  + V IL++    A+ V A D+ G  P+H AA  G++ +V++LL
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANG--AD-VAAKDKNGSTPLHLAARNGHLEVVKLLL 77

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
             GADV  ++  G+TA   +   G   + E+L
Sbjct: 78  EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.1 bits (131), Expect = 5e-10
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T LH+AA  GH EVV++LL     A+ V A D+ G      +   GN  + E+L
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEAG--AD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  107 bits (269), Expect = 2e-28
 Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 23/173 (13%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV----TIV 97
           ++   T LH   S  + E+V+ L+     +N     D  G + +  A    N     T  
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVK--HGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFE 184

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLK------------IVELLISRGAKINSKDK 145
            +L      + L++   RT LH+      +             ++  ++ +  +      
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244

Query: 146 VGCTALHRGASTGNSALCELLIEEGAE----VDATDKAGQTPLMNAVICYNKE 194
               +     +          ++        ++A D  G T L  A    N  
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 297

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  102 bits (256), Expect = 2e-26
 Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 21/167 (12%)

Query: 41  RNDDDRTLLHVAASCGH---PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-- 95
            ++   + L  A    +       E LL        +   D      +H       +T  
Sbjct: 160 GDNMGESCLVKAVKSVNNYDSGTFEALLD--YLYPCLILEDSMNRTILHHIIITSGMTGC 217

Query: 96  ----------IVEMLLSKGADVNLKNDGGRTALHYAA----SKGWLKIVELLISRGAKIN 141
                     ++  ++ K           + +             L+ ++L       +N
Sbjct: 218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

Query: 142 SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
           ++D  G T L+  A  GN ++ + L++ GA+    +K+G  P+    
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 93.6 bits (232), Expect = 5e-23
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 19/168 (11%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSK--QQLLKSLSLRNDDDRTLLHVAASC----GHP 58
             D      L KA ++ ++    +       L   L L +  +RT+LH         G  
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 59  EVVEILLS------VDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK---GADVNL 109
              +  L       V +    + +   E  +  +        +I+E L  K      +N 
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           ++  G T L+ AA  G + IV+ L+  GA     +K G   +  GA  
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 88.2 bits (218), Expect = 4e-21
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 2/151 (1%)

Query: 50  HVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
           H   S      ++I+ ++       N    +  A +          +   L +  ++ N 
Sbjct: 32  HDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNS 91

Query: 110 KNDGGRTALHYAASKGWLK-IVELLISRGAKINSK-DKVGCTALHRGASTGNSALCELLI 167
           +         + +    L+ + +   +    +N   D+ G T LH   S  N  L + L+
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 168 EEGAEVDATDKAGQTPLMNAVICYNKEFSGC 198
           + G+     D  G++ L+ AV   N   SG 
Sbjct: 152 KHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 182

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  107 bits (268), Expect = 5e-28
 Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 5/169 (2%)

Query: 28  SLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           + + +QL      +      +  VAA  G    ++ L  +  S  +V  +  E +     
Sbjct: 75  NRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL 134

Query: 88  AASIGNVTIVEMLLSKGADVNLKN--DGGRTALHYAASKGWLKIVELLISRGAKINSKD- 144
           AA  G++ ++  L        +         A   AA  G L ++  L        +   
Sbjct: 135 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 194

Query: 145 -KVGCTALHRGAST-GNSALCELLIEEGAEVDATDKAGQTPLMNAVICY 191
                 A    A   G+  +   L++    +   +          V  +
Sbjct: 195 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPF 243

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 97.3 bits (242), Expect = 3e-24
 Identities = 27/218 (12%), Positives = 56/218 (25%), Gaps = 39/218 (17%)

Query: 2   DMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH 57
             D    +   +       AAE G       L +    + +++   ++     +AA  GH
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117
             V+  L  +  +        E  +A   +A   G+  ++  LL     +          
Sbjct: 176 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI----- 230

Query: 118 LHYAASKGWLKIVELLISRGAKIN--------------------SKDKVGCTALHRGAST 157
             +    G   +   +     ++                     S+   G   L      
Sbjct: 231 --HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRR 288

Query: 158 GNSALCELL--------IEEGAEVDATDKAGQTPLMNA 187
            +  L + +        I+  A            L  A
Sbjct: 289 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 326

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 96.2 bits (239), Expect = 8e-24
 Identities = 23/187 (12%), Positives = 42/187 (22%), Gaps = 6/187 (3%)

Query: 5   IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
           I   + +          + S      K+ +   L    + ++    +     H       
Sbjct: 21  IPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQ 80

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124
           L     A+      E              +  + +LL+    V +       A   AA  
Sbjct: 81  LW--SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138

Query: 125 GWLKIVELLISRGAKINSKDKV--GCTALHRGASTGNSALCELLIEEGAEVDATD--KAG 180
           G L ++  L                  A    A  G+  +   L E              
Sbjct: 139 GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN 198

Query: 181 QTPLMNA 187
                 A
Sbjct: 199 YYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 14/147 (9%), Positives = 38/147 (25%), Gaps = 23/147 (15%)

Query: 33  QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG 92
             +     R  +      ++   G  ++V              +   +G+  + +     
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVT------------KSECLQGFYMLRNLIRRN 289

Query: 93  NVTIVEML--------LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +  +++ +        +   A            L  A   G      LL+S  + +    
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349

Query: 145 KVGCTALHRGASTGNSALCELLIEEGA 171
                  +   + G   L  + +E   
Sbjct: 350 A---NNYYINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 69.2 bits (169), Expect = 3e-14
 Identities = 20/180 (11%), Positives = 40/180 (22%), Gaps = 38/180 (21%)

Query: 29  LSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88
                   +  ++ ++       A   GH  V+  LL       +  A            
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP--VMLAYAEIH--------E 232

Query: 89  ASIGNVTIVEMLLSKGADVNLKND--------------------GGRTALHYAASKGWLK 128
              G   +   +      +   +D                     G   L     +    
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 292

Query: 129 IVELL--------ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
           +++ +        I   A   +        L      GN   C LL+   + +  T    
Sbjct: 293 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 28  SLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           S+   + L   +    D   LL +A   G+     +LLS+     +  A         + 
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA------NNYYI 355

Query: 88  AASIGNVTIVEMLLSKGADVN 108
             + G + +  + L      +
Sbjct: 356 NETGGRLDLRAVALEHHHHHH 376

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 81.0 bits (199), Expect = 2e-18
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 66  SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG--GRTALHYAAS 123
           S  E  +        G     ++    ++  +   L+ GADVN  N G    T L  A +
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244

Query: 124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
              L   E L+  GA +N  D  G   LH     G++ L  L ++ GA++ A D  G+ P
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304

Query: 184 LMNAVICYNKE 194
           L  A+   N +
Sbjct: 305 LTIAMETANAD 315

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 74.8 bits (183), Expect = 4e-16
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 3/163 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                  L   +        +   L+     N VN   ++   P+  A +  ++   E L
Sbjct: 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNG-GQDNATPLIQATAANSLLACEFL 254

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L  GA+VN  +  GR  LH+A   G   +  L + RGA + ++D  G   L     T N+
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK 203
            +  LL    A++   + A         +   ++FS  +S + 
Sbjct: 315 DIVTLLRL--AKMREAEAAQGQAGDETYLDIFRDFSLMASDDP 355

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 79.7 bits (196), Expect = 3e-18
 Identities = 21/98 (21%), Positives = 41/98 (41%)

Query: 37  SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI 96
            L+  ++ D T LH+A        + I+  + +++  ++    +G   +H      N   
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           +++LL   A + + N+ G T L  A         ELL 
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 78  DEEGWAPIHSAASIGN---VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
            E     +H A    +   + IV+ L+    +++ +   G TALHY       + ++LL+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
              A I   ++ G T L       +    ELL +
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 76.2 bits (187), Expect = 6e-17
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 9/107 (8%)

Query: 97  VEMLLSKGADVNLK------NDGGRTALHYAASKG---WLKIVELLISRGAKINSKDKVG 147
           +    + G D+  K      ++   TALH A        L IV+ L+     ++ +   G
Sbjct: 146 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 205

Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            TALH    T N+   +LL+   A ++  +++G+TPL  A    ++ 
Sbjct: 206 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 252

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 77.7 bits (191), Expect = 2e-17
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 78  DEEGWAPIHSAASIGNVT---IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
                  +H A  + N     +V+ ++  G  ++ K   G TALHYAA       ++LL+
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
              A + + ++ G TAL       +    ELL +
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 75.0 bits (184), Expect = 2e-16
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDG------GRTALHYAASKGW---LKIVELLI 134
            + +A    ++  V    + G D      G          LH A        L +V+ +I
Sbjct: 154 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII 213

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
             G  +++K   G TALH  A        +LL++  A V   ++AG+T L  A   ++KE
Sbjct: 214 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 273

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.3 bits (177), Expect = 2e-15
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 42  NDDDRTLLHVAASCGHP---EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
              +  +LH+A    +     +V+ ++      ++ +A   +G   +H AA       ++
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHL-DAKAADGNTALHYAALYNQPDCLK 243

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           +LL   A V   N+ G TAL  A  K   +  ELL    A+  
Sbjct: 244 LLLKGRALVGTVNEAGETALDIARKKHHKECEELL--EQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           L  +  D  T LH AA    P+ +++LL     A  V  V+E G   +  A    +    
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLK--GRAL-VGTVNEAGETALDIARKKHHKECE 275

Query: 98  EML 100
           E+L
Sbjct: 276 ELL 278

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 71.9 bits (176), Expect = 5e-15
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASI---GNVTIV 97
            + + L     +     V+E   +  +    +   D        +H A  +    ++ +V
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
           + ++  G  ++ K   G TALHYAA       ++LL+   A + + ++ G TAL      
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

Query: 158 GNSALCELL 166
            +    ELL
Sbjct: 251 HHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 66.1 bits (161), Expect = 5e-13
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 85  IHSAASIGNVTIVEMLLSKGADVNLK------NDGGRTALHYA---ASKGWLKIVELLIS 135
           + +A    ++  V    + G D                 LH A   A++  L +V+ +I 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 136 RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            G  +++K   G TALH  A        +LL++  A V   ++AG+T L  A   ++KE
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.2e-41  Score=249.43  Aligned_cols=201  Identities=26%  Similarity=0.280  Sum_probs=184.8

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhh-hccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      ++..+..|.++||.|++.|+.+++++|++.+... .++..+..|.||||+|+..|+.+++++|++.|.+   ++..+..|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g   78 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERGG   78 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTS
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCC
Confidence            4678899999999999999999999999877421 2677889999999999999999999999998877   56778899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCC-----------------------------------------------CCCCCCCC
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGAD-----------------------------------------------VNLKNDGG  114 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~-----------------------------------------------~~~~~~~~  114 (208)
                      .||||+|+..|+.+++++|+++++.                                               ++.++..|
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            9999999999999999999998755                                               56678899


Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCc
Q 028517          115 RTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK  193 (208)
Q Consensus       115 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~  193 (208)
                      .||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~  238 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP  238 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCc
Confidence            99999999999999999999999999988854 99999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccc
Q 028517          194 EFSGCSSSNKTWS  206 (208)
Q Consensus       194 ~~~~~l~~~~~~~  206 (208)
                      +++++|+++++..
T Consensus       239 ~~v~~Ll~~ga~~  251 (282)
T 1oy3_D          239 ILARLLRAHGAPE  251 (282)
T ss_dssp             HHHHHHHHTTCCC
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999988754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.6e-40  Score=240.08  Aligned_cols=201  Identities=29%  Similarity=0.400  Sum_probs=189.4

Q ss_pred             CCcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCC
Q 028517            1 MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (208)
Q Consensus         1 ~~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~   80 (208)
                      ++++..+..+.++|+.|++.|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+..   ++..+..
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~   76 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL---VDPKDAE   76 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---CCCCCTT
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCC
Confidence            688899999999999999999999999999876  46777889999999999999999999999998776   5667789


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCC-CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 028517           81 GWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (208)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~  159 (208)
                      |.|||+.|+..|+.+++++|++.+ .+++.++..|.||+++|+..++.+++++|+++|++++..+..|.||||.|+..|+
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  156 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC  156 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCC
Confidence            999999999999999999999998 7889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      .+++++|+++|++++..+..|.||||+|+..++.+++++|+++++..
T Consensus       157 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999987643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.7e-41  Score=247.71  Aligned_cols=195  Identities=24%  Similarity=0.284  Sum_probs=147.0

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (208)
                      +..+.++||.|++.|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+...  ++..+..|.||||
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~  129 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLI  129 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC--TTCCCTTCCCHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--ccccCCCCCcHHH
Confidence            566777777777777777777777654  456666777777777777777777777777655422  4556667778888


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      .|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~L  209 (253)
T 1yyh_A          130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL  209 (253)
T ss_dssp             HHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence            88888888888888887777777777788888888888888888888888888877777788888888888888888888


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          167 IEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       167 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      +++|++++.+|..|.||+++|+..|+.+|+++|.+..++
T Consensus       210 l~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             HHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            888888888888888888888888888888887775543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.2e-40  Score=237.32  Aligned_cols=196  Identities=24%  Similarity=0.278  Sum_probs=184.8

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (208)
                      +..+.++|+.|++.|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+...  .+..+..|.|||+
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~   97 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLI   97 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC--TTCCCTTCCCHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCcHHH
Confidence            678999999999999999999999876  577788999999999999999999999999876532  5677889999999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      .|+..++.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  177 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL  177 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          167 IEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       167 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      +++|++++.++..|.||+++|+..++.+++++|++.+...
T Consensus       178 l~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             HHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            9999999999999999999999999999999999987643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.4e-40  Score=242.84  Aligned_cols=188  Identities=24%  Similarity=0.289  Sum_probs=155.8

Q ss_pred             HHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCH
Q 028517           15 FKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV   94 (208)
Q Consensus        15 ~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~   94 (208)
                      ..+...++.+++++|++.+. ......+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|+..|+.
T Consensus        28 ~~~~~~~~~~~v~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~  103 (253)
T 1yyh_A           28 NSEEEEDAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD---ANIQDNMGRTPLHAAVSADAQ  103 (253)
T ss_dssp             -------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH
T ss_pred             chhhcCCChHHHHHHHHccC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCH
Confidence            34788999999999998873 23244588999999999999999999999998876   567788999999999999999


Q ss_pred             HHHHHHHhCCC-CCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCC
Q 028517           95 TIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV  173 (208)
Q Consensus        95 ~~~~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~  173 (208)
                      +++++|++++. +++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus       104 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  183 (253)
T 1yyh_A          104 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK  183 (253)
T ss_dssp             HHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999987 88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          174 DATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       174 ~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      +.++..|.||||+|+..|+.+++++|+++++..
T Consensus       184 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  216 (253)
T 1yyh_A          184 DMQNNREETPLFLAAREGSYETAKVLLDHFANR  216 (253)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            999999999999999999999999999987643

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.5e-40  Score=239.57  Aligned_cols=196  Identities=27%  Similarity=0.295  Sum_probs=179.8

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccc--ccccCCCCCcHHH
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--VNAVDEEGWAPIH   86 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~--~~~~~~~~~~~l~   86 (208)
                      .|+++||.|++.|+.+.+++|++.. +.+++..+..|.||||+|+..|+.+++++|++.+.....  .+..+..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            5789999999999999999999874 467888899999999999999999999999998776321  2456678999999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCCC-------------CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKND-------------GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHR  153 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~-------------~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~  153 (208)
                      .|+..|+.+++++|+++|++++.++.             .|.||+|+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  160 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI  160 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            99999999999999999999988765             79999999999999999999999999999999999999999


Q ss_pred             HHhhCCHHHH----HHHHHcCCCC------CCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          154 GASTGNSALC----ELLIEEGAEV------DATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       154 A~~~~~~~~~----~~Ll~~~~~~------~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      |+..++.+++    ++|+++|+++      +.+|..|.||+++|+..|+.+++++|+++++.
T Consensus       161 A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          161 LILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             HHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999988    9999999988      58899999999999999999999999998754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1e-39  Score=235.04  Aligned_cols=193  Identities=36%  Similarity=0.469  Sum_probs=134.9

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (208)
                      .+.++|+.|++.|+.+.++++++.. .......+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   80 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIA   80 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC---CCCcCCCCCCHHHHH
Confidence            4566777777777777777777655 334455566777777777777777777777766554   455566677777777


Q ss_pred             HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH
Q 028517           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE  168 (208)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~  168 (208)
                      +..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|++
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            77777777777777777777777777777777777777777777777777777677777777777777777777777777


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          169 EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       169 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      +|++++.++..|.||||+|+..++.+++++|++++..
T Consensus       161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  197 (231)
T 3aji_A          161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS  197 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            7777777777777777777777777777777766543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9.3e-40  Score=234.75  Aligned_cols=194  Identities=31%  Similarity=0.449  Sum_probs=177.1

Q ss_pred             CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (208)
Q Consensus        10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (208)
                      +++||+.|++.|+.+.+++|++.+ .......+..|.||||+|+..|+.+++++|++.+.........+..|.||||.|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcC-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            679999999999999999999887 3444557899999999999999999999999988555433337789999999999


Q ss_pred             hcCCHHHHHHHHhCC--CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517           90 SIGNVTIVEMLLSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI  167 (208)
Q Consensus        90 ~~~~~~~~~~Ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll  167 (208)
                      ..|+.+++++|+++|  .+++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999998  888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcC-CCCCCCCCCCCCHHHHHHHhCCcccccccc-cccc
Q 028517          168 EEG-AEVDATDKAGQTPLMNAVICYNKEFSGCSS-SNKT  204 (208)
Q Consensus       168 ~~~-~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~-~~~~  204 (208)
                      ++| ++++.++..|.||||+|+..|+.+++++|+ +.+.
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga  199 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA  199 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            999 999999999999999999999999999999 5554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2e-40  Score=238.74  Aligned_cols=198  Identities=29%  Similarity=0.353  Sum_probs=186.5

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (208)
                      .+..+..+.++|+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~  107 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGC  107 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC---CCCCCCCCC
Confidence            3556788999999999999999999999875  57778899999999999999999999999998876   566788999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~  162 (208)
                      ||||.|+..++.+++++|+++|.+++.++..|.||+|+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.++
T Consensus       108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  187 (231)
T 3aji_A          108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE  187 (231)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      +++|+++|++++.+|..|.||+++|+..++.+++++|.++++.
T Consensus       188 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          188 AKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            9999999999999999999999999999999999999987653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1e-39  Score=236.34  Aligned_cols=199  Identities=27%  Similarity=0.296  Sum_probs=170.9

Q ss_pred             ccccccCcHHHHHHHHcCChHHHHHHHHHh--hhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQ--LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~--~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +..|..+.++||.|++.|+.+++++|++..  .+.+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g   79 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS---PMALDRHG   79 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCC
Confidence            567888999999999999999999998742  2456777888899999999999999999999988766   45667788


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCC----CCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHh
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGA----DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGAS  156 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~A~~  156 (208)
                      .||||.|+..++.+++++|++.+.    +++.++..|.||+|+|+..++.+++++|+++|++++..+ ..|.||||.|+.
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            999999999999999999999876    777788889999999999999999999999999988887 778999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      .|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++.
T Consensus       160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  208 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD  208 (241)
T ss_dssp             TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999887654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.1e-39  Score=230.21  Aligned_cols=192  Identities=24%  Similarity=0.310  Sum_probs=180.1

Q ss_pred             ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHH
Q 028517            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (208)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~   87 (208)
                      ..+.++|+.|+..|+.+.++.|+..+ ..+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~   78 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD---INLQNSISDSPYLY   78 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHH
Confidence            46789999999999999999999876 457788899999999999999999999999998877   56678899999999


Q ss_pred             HHhcCCHHHHHHHH-hCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHhhCC-----H
Q 028517           88 AASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTGN-----S  160 (208)
Q Consensus        88 a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~A~~~~~-----~  160 (208)
                      |+..|+.+++++|+ ..+.+++.++..|.||+|+|+..++.+++++|+++| .+++..+..|.||||.|+..+.     .
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  158 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ  158 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence            99999999999999 567799999999999999999999999999999998 9999999999999999999998     9


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517          161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK  203 (208)
Q Consensus       161 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  203 (208)
                      +++++|+++|++++.++..|.||+++|+..|+.+++++|++.+
T Consensus       159 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999999999999999999999999999999999865

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.4e-40  Score=237.77  Aligned_cols=201  Identities=24%  Similarity=0.338  Sum_probs=182.3

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccc-cccccCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN-VVNAVDEE   80 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~-~~~~~~~~   80 (208)
                      +++..+..+.++|+.|+..|+.+++++|++.+  .++...+..|.||||+|+..|+.+++++|++.+.... .++..+..
T Consensus        38 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  115 (241)
T 1k1a_A           38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG--ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD  115 (241)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred             CCCcccccCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcC
Confidence            56778889999999999999999999999866  5777788999999999999999999999998776211 25667789


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 028517           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (208)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~  159 (208)
                      |.||||.|+..++.+++++|++.|++++.++ ..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+..|+
T Consensus       116 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  195 (241)
T 1k1a_A          116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL  195 (241)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999999988 789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      .+++++|+++|++++.+|..|.||+++|+..|+.++++.|.++++
T Consensus       196 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          196 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            999999999999999999999999999999999999999998753

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.2e-41  Score=242.30  Aligned_cols=199  Identities=27%  Similarity=0.295  Sum_probs=178.5

Q ss_pred             ccccccCcHHHHHHHHcCChHHHHHHHHHhhh--hhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~--~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +..+..|.++||.|+..|+.+++++|++....  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g   78 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD---PELRDFRG   78 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC---SCCCCTTC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCC
Confidence            35678899999999999999999999987632  25778889999999999999999999999998876   56678899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCC------CCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGAD------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-VGCTALHRG  154 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~t~l~~A  154 (208)
                      .||||+|+..|+.+++++|++.+..      .+..+..|.||+|+|+..|+.+++++|+++|++++..+. .|.||||+|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA  158 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999999875      456777899999999999999999999999999999987 999999999


Q ss_pred             HhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       155 ~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      +..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|+++++.
T Consensus       159 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  209 (236)
T 1ikn_D          159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  209 (236)
T ss_dssp             HHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchh
Confidence            999999999999999999999999999999999999999999999998873

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.9e-39  Score=237.77  Aligned_cols=197  Identities=26%  Similarity=0.300  Sum_probs=178.5

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (208)
                      +...+..+.++|+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~  126 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWH  126 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SSCCCTTCC
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCC
Confidence            3456788899999999999999999999865  46777889999999999999999999999998766   567788999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~  162 (208)
                      |||+.|+..|+.+++++|++.|++++..+ .|.||+|+|+..|+.+++++|+++|++++..+..|.|||+.|+..|+.++
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~  205 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC  205 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            99999999999999999999999887644 59999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      +++|+++|++++. +..|.||||+|+..++.+++++|++++...
T Consensus       206 v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  248 (285)
T 3d9h_A          206 VKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT  248 (285)
T ss_dssp             HHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999999999984 888999999999999999999999887643

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.5e-39  Score=248.98  Aligned_cols=199  Identities=19%  Similarity=0.228  Sum_probs=158.9

Q ss_pred             ccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccc----------
Q 028517            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV----------   73 (208)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~----------   73 (208)
                      +..|..+.++||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.....          
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A   91 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLA   91 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHH
Confidence            344555566666666666666666666543  34555555666666666666666666666654442111          


Q ss_pred             ----------------------cc-----------------ccCCCCCcHHHHHHhcC--CHHHHHHHHhCCCCCCCCCC
Q 028517           74 ----------------------VN-----------------AVDEEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKND  112 (208)
Q Consensus        74 ----------------------~~-----------------~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~  112 (208)
                                            .+                 ..+..|.||||.|+..|  +.+++++|+++|++++.++.
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~  171 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK  171 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC
Confidence                                  11                 15567899999999999  99999999999999999999


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 028517          113 GGRTALHYAASKGWLKIVELLISRGAK-----INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA  187 (208)
Q Consensus       113 ~~~~~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  187 (208)
                      .|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|
T Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  251 (364)
T 3ljn_A          172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS  251 (364)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999999988     889999999999999999999999999999999999999999999999


Q ss_pred             HHhCCcccccccccccc
Q 028517          188 VICYNKEFSGCSSSNKT  204 (208)
Q Consensus       188 ~~~~~~~~~~~l~~~~~  204 (208)
                      +..|+.+++++|+++++
T Consensus       252 ~~~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          252 VRAAMVLLTKELLQKTD  268 (364)
T ss_dssp             HHTCCHHHHHHHHHHSC
T ss_pred             HHhChHHHHHHHHHcCC
Confidence            99999999999998754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.7e-38  Score=241.37  Aligned_cols=200  Identities=32%  Similarity=0.376  Sum_probs=180.0

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +++..+..+.++||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|
T Consensus        50 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~---~~~~~~~g  124 (351)
T 3utm_A           50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQ  124 (351)
T ss_dssp             TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCC
Confidence            45677888999999999999999999999876  57778889999999999999999999999998776   56677889


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCCC--------------------------------------------------
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------------------------------------------  111 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------------------------------------------  111 (208)
                      .||||.|+..|+.+++++|+++|++++..+                                                  
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN  204 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence            999999999999999999999998877544                                                  


Q ss_pred             ----CCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 028517          112 ----DGGRTALHYAASK---GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL  184 (208)
Q Consensus       112 ----~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l  184 (208)
                          ..+.||+|+|+..   +..+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|.|||
T Consensus       205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L  284 (351)
T 3utm_A          205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL  284 (351)
T ss_dssp             CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence                4567888999888   557899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcccccccccccccc
Q 028517          185 MNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       185 ~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |+|+..|+.+++++|+++++..
T Consensus       285 ~~A~~~~~~~~v~~Ll~~gad~  306 (351)
T 3utm_A          285 HRAALAGHLQTCRLLLSYGSDP  306 (351)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHcCcHHHHHHHHHcCCCC
Confidence            9999999999999999987643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.2e-39  Score=238.29  Aligned_cols=194  Identities=23%  Similarity=0.287  Sum_probs=173.1

Q ss_pred             CcHHHHHHHHcCChHHHH----HHHHHhhhhhccC----CCCCCchHHHHHHhc---CCHHHHHHHHhccccccccc---
Q 028517           10 KDKDLFKAAETGDSSTFK----SLSKQQLLKSLSL----RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVN---   75 (208)
Q Consensus        10 ~~~~l~~a~~~g~~~~~~----~l~~~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~~~---   75 (208)
                      |+++||.|++.|+.+.++    +|++.+  .+++.    .+..|.||||+|+..   |+.+++++|++.+.......   
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g--~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNS--KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcC--CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            789999999999998554    444444  45665    789999999999999   99999999999877643211   


Q ss_pred             -----ccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCC-------------CchHHHHHHHcCCHHHHHHHHH--
Q 028517           76 -----AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLIS--  135 (208)
Q Consensus        76 -----~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~ll~--  135 (208)
                           ..+..|.||||.|+..|+.+++++|+++|++++.++..             |.||||+|+..|+.+++++|++  
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                 23467999999999999999999999999999998876             9999999999999999999999  


Q ss_pred             -cCCCCCCCCCCCCcHHHHHHh--hCCHH-------HHHHHHHcCCCC-------CCCCCCCCCHHHHHHHhCCcccccc
Q 028517          136 -RGAKINSKDKVGCTALHRGAS--TGNSA-------LCELLIEEGAEV-------DATDKAGQTPLMNAVICYNKEFSGC  198 (208)
Q Consensus       136 -~~~~~~~~~~~~~t~l~~A~~--~~~~~-------~~~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~  198 (208)
                       +|++++..|..|.||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||+|+..|+.+++++
T Consensus       160 ~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  239 (256)
T 2etb_A          160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH  239 (256)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHH
Confidence             999999999999999999999  78888       999999999999       8999999999999999999999999


Q ss_pred             ccccccc
Q 028517          199 SSSNKTW  205 (208)
Q Consensus       199 l~~~~~~  205 (208)
                      |+++++.
T Consensus       240 Ll~~g~~  246 (256)
T 2etb_A          240 ILQREFS  246 (256)
T ss_dssp             HHHHHHH
T ss_pred             HHhCCCC
Confidence            9997753

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-38  Score=233.10  Aligned_cols=205  Identities=25%  Similarity=0.292  Sum_probs=157.6

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccc-----
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA-----   76 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-----   76 (208)
                      +++..+..+.++|+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+......     
T Consensus        64 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  141 (285)
T 1wdy_A           64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ  141 (285)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHH
Confidence            34455566667777777777777777776654  35555666777777777777777777777776655322111     


Q ss_pred             --cCCCCCcHHHHHHhcCCHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCc
Q 028517           77 --VDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGW----LKIVELLISRGAKINSKDKVGCT  149 (208)
Q Consensus        77 --~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~t  149 (208)
                        .+..|.|||+.|+..|+.+++++|++. |.+++.++..|.||+|+|+..+.    .+++++|+++|++++..+..|.|
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t  221 (285)
T 1wdy_A          142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT  221 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             HhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCc
Confidence              155677888888888888888888876 78888888888888888888887    78888888888888888888889


Q ss_pred             HHHHHHhhCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhCCccccccccccccccCC
Q 028517          150 ALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC  208 (208)
Q Consensus       150 ~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~  208 (208)
                      |||.|+..|+.+++++|++ .|++++.++..|.||+++|+..++.+++++|+++++..++
T Consensus       222 ~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence            9999999999999999988 6888888888899999999999999999999888876553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.4e-39  Score=240.23  Aligned_cols=198  Identities=16%  Similarity=0.127  Sum_probs=181.1

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +++..+..+.++||.|++.|+.+++++|++.+  .+++..  +|.||||+|+..|+.+++++|++.+.+   ++..+..|
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g   95 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLD---DSQFDDKG   95 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCC
Confidence            46778899999999999999999999999876  355544  489999999999999999999998877   56678899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCC-chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG-RTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS  160 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~  160 (208)
                      .||||.|+..|+.+++++|+++|++++.++..| .||+|+|+..|+.+++++|+++|.+.... ..|.||||.|+..|+.
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~  174 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHV  174 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChH
Confidence            999999999999999999999999999999999 79999999999999999999999876322 2789999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhCCccccccccccccccC
Q 028517          161 ALCELLIEEGAEVDATDKAGQTP-LMNAVICYNKEFSGCSSSNKTWSG  207 (208)
Q Consensus       161 ~~~~~Ll~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~l~~~~~~~~  207 (208)
                      +++++|+++|++++.++..|.|| ||+|+..++.+++++|+++++..+
T Consensus       175 ~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~  222 (285)
T 3kea_A          175 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY  222 (285)
T ss_dssp             HHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred             HHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999998 999999999999999999887543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.7e-39  Score=245.29  Aligned_cols=202  Identities=23%  Similarity=0.289  Sum_probs=185.2

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +++..+..+.|+|+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.....++..+..|
T Consensus       158 ~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g  235 (373)
T 2fo1_E          158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  235 (373)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC--CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence            56788899999999999999999999999876  5777889999999999999999999999998763222367788899


Q ss_pred             CcHHHHHHhcC---CHHHHHHHHhCCCCCCC--------CCCCCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCc
Q 028517           82 WAPIHSAASIG---NVTIVEMLLSKGADVNL--------KNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCT  149 (208)
Q Consensus        82 ~~~l~~a~~~~---~~~~~~~Ll~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t  149 (208)
                      .||||.|+..+   +.+++++|+++|++++.        ++..|.||||+|+..|+.+++++|++++ ++++..|..|.|
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T  315 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  315 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence            99999999988   89999999999998876        5668999999999999999999999886 999999999999


Q ss_pred             HHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          150 ALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       150 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      |||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|+++++.
T Consensus       316 pL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          316 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            99999999999999999999999999999999999999999999999999998864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=239.03  Aligned_cols=195  Identities=26%  Similarity=0.345  Sum_probs=152.7

Q ss_pred             ccccccCcHHHHHHHHcCChH-HHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517            4 DIDQTIKDKDLFKAAETGDSS-TFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (208)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~-~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (208)
                      +..+..+.++|+.|+..+..+ +++.|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.
T Consensus        46 ~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~---~~~~~~~g~  120 (269)
T 4b93_B           46 SAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN---AGARNADQA  120 (269)
T ss_dssp             -----------------------------CC--CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC---TTCCCTTCC
T ss_pred             cccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC---cCccCCCCC
Confidence            445667889999999988875 677787655  57888899999999999999999999999998876   566778999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~  162 (208)
                      ||++.|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus       121 t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~  200 (269)
T 4b93_B          121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFV  200 (269)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             CccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhCC-ccccccccccc
Q 028517          163 CELLIEEGAEVDATDKAGQTPLMNAVICYN-KEFSGCSSSNK  203 (208)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-~~~~~~l~~~~  203 (208)
                      +++|+++|+|++.+|.+|.||||+|+++++ .+++++|.+..
T Consensus       201 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~  242 (269)
T 4b93_B          201 VELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV  242 (269)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence            999999999999999999999999998876 46666665543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.2e-39  Score=238.14  Aligned_cols=201  Identities=23%  Similarity=0.299  Sum_probs=175.8

Q ss_pred             ccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhcc------CCCCCCchHHHHHHhc---CCHHHHHHHHhccccccc-
Q 028517            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLS------LRNDDDRTLLHVAASC---GHPEVVEILLSVDESANV-   73 (208)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~------~~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~-   73 (208)
                      +..+..++++|+.|++.|+.++++.|++........      ..+..|.||||+|+..   |+.+++++|++.++.... 
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            456788999999999999999999999865322211      3478999999999987   999999999998764221 


Q ss_pred             -------ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCC--------------CCchHHHHHHHcCCHHHHHH
Q 028517           74 -------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND--------------GGRTALHYAASKGWLKIVEL  132 (208)
Q Consensus        74 -------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~  132 (208)
                             ....+..|.||||+|+..|+.+++++|+++|++++.++.              .|.||||+|+..|+.+++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                   122456899999999999999999999999999999887              79999999999999999999


Q ss_pred             HHH---cCCCCCCCCCCCCcHHHHHHhhCC---------HHHHHHHHHcCCCCC-------CCCCCCCCHHHHHHHhCCc
Q 028517          133 LIS---RGAKINSKDKVGCTALHRGASTGN---------SALCELLIEEGAEVD-------ATDKAGQTPLMNAVICYNK  193 (208)
Q Consensus       133 ll~---~~~~~~~~~~~~~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~-------~~~~~g~t~l~~A~~~~~~  193 (208)
                      |++   +|++++.+|..|.||||+|+..|+         .+++++|+++|++++       .+|..|.||||+|+..|+.
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence            999   999999999999999999999998         799999999999986       5899999999999999999


Q ss_pred             ccccccccccc
Q 028517          194 EFSGCSSSNKT  204 (208)
Q Consensus       194 ~~~~~l~~~~~  204 (208)
                      +++++|+++++
T Consensus       247 ~iv~~Ll~~ga  257 (273)
T 2pnn_A          247 GVLAYILQREI  257 (273)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHCCC
Confidence            99999999876

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.7e-38  Score=228.40  Aligned_cols=195  Identities=30%  Similarity=0.428  Sum_probs=180.0

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +++..+..+.++|+.|+..|+.+++++|++.+  .++...+..|.||||+|+..|+.+++++|++.+...  ++..+..|
T Consensus        36 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~g  111 (237)
T 3b7b_A           36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG--ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGG  111 (237)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC--TTCCCTTS
T ss_pred             CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC--cccCCCCC
Confidence            56777888999999999999999999999766  467778899999999999999999999999876322  66778899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~  161 (208)
                      .|||+.|+..++.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++|++++..+..|.||||.|++.++.+
T Consensus       112 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  191 (237)
T 3b7b_A          112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD  191 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS  200 (208)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  200 (208)
                      ++++|+++|++++.+|.+|.||+++|+..++.+.+..++
T Consensus       192 ~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          192 CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876554443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=227.28  Aligned_cols=201  Identities=29%  Similarity=0.315  Sum_probs=128.8

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (208)
                      ++..+..+.++|+.|++.|+.+++++|++.+. ......+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~  110 (240)
T 3eu9_A           35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGA-IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEGC  110 (240)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred             cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC-cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC---CcccCCCCC
Confidence            34444555556666666666666666655441 11122233355666666666666666666655444   334455566


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC-HHHHHHHHHcCCCCCCCCC-CCCcHHHHHHhhCCH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDK-VGCTALHRGASTGNS  160 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~-~~~t~l~~A~~~~~~  160 (208)
                      |||+.|+..|+.+++++|+++|++++.++..|.||+++|+..+. .+++++|++.|++++..+. .|.||||.|+..|+.
T Consensus       111 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~  190 (240)
T 3eu9_A          111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT  190 (240)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCH
Confidence            66666666666666666666666666666666666666664443 5566666666666666665 678888888888888


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccccC
Q 028517          161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSG  207 (208)
Q Consensus       161 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~  207 (208)
                      +++++|+++|++++.++..|.||+++|+..|+.+++++|++.+...+
T Consensus       191 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            88888888888888888888888888888888888888888776544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.2e-38  Score=216.03  Aligned_cols=157  Identities=42%  Similarity=0.636  Sum_probs=92.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcC
Q 028517           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (208)
Q Consensus        13 ~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~   92 (208)
                      +|+.|++.|+.++|+.|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++..+..|.||||+|+..|
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad---~~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc---hhhhccCCCCHHHHHHHcC
Confidence            456666666666666666544  35555566666666666666666666666655544   3445555666666666666


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCC
Q 028517           93 NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE  172 (208)
Q Consensus        93 ~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~  172 (208)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus        82 ~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           82 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             CC
Q 028517          173 VD  174 (208)
Q Consensus       173 ~~  174 (208)
                      ++
T Consensus       162 ie  163 (169)
T 4gpm_A          162 LE  163 (169)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.1e-38  Score=225.69  Aligned_cols=194  Identities=26%  Similarity=0.291  Sum_probs=176.3

Q ss_pred             cccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccC-CCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCc
Q 028517            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (208)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (208)
                      ..+..+.++|+.|++.|+.+++++|++.+...+... .+..|.||||+|+..|+.+++++|++.+.... ++..+..|.|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t  109 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVT  109 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCC
Confidence            367889999999999999999999998874445555 78899999999999999999999999873222 6777889999


Q ss_pred             HHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTGNSAL  162 (208)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~A~~~~~~~~  162 (208)
                      |||.|+..++.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++| .+++..+..|.||||+|+..|+.++
T Consensus       110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~  189 (228)
T 2dzn_A          110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA  189 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHH-HcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517          163 CELLI-EEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       163 ~~~Ll-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      +++|+ ++|++++.+|.+|.||+++|+..   +++++|.++
T Consensus       190 v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          190 AVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             HHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             HHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            99999 88999999999999999999654   677777654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-39  Score=235.35  Aligned_cols=199  Identities=25%  Similarity=0.331  Sum_probs=156.5

Q ss_pred             cccccCcHHHHHHHHcCChHHHHHHHHHhhh------hhccCCCCCCchHHHHHHhcCCH-HHHHHHHhccccccccccc
Q 028517            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLL------KSLSLRNDDDRTLLHVAASCGHP-EVVEILLSVDESANVVNAV   77 (208)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~------~~~~~~~~~g~t~L~~A~~~g~~-~~~~~ll~~~~~~~~~~~~   77 (208)
                      ..|..+.++|+.|++.|+.++|++|++.+..      ......+..+.|||+.|+..+.. +++++|++.|.+   ++..
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad---vn~~   82 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG---VNVT   82 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC---TTCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC---CCCc
Confidence            4566778999999999999999999975421      12445677889999999988876 478899988876   6778


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh
Q 028517           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST  157 (208)
Q Consensus        78 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~  157 (208)
                      +..|.||||+|+..|+.+++++|++.+++++.++..|.||++.|+..++.+++++|+++|++++..|..|.||||+|+..
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       158 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++..
T Consensus       163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~  211 (269)
T 4b93_B          163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV  211 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999999999999999999999999999999999999999999987654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-37  Score=243.42  Aligned_cols=199  Identities=32%  Similarity=0.372  Sum_probs=166.5

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +++..+..+.++|+.|+..|+.++|++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g   80 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---VNAKAKDD   80 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTT--CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---SSCCCTTS
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCC
Confidence            45667888899999999999999999998865  46677788899999999999999999999987765   56677888


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~  161 (208)
                      .||||.|+..|+.+++++|+++|++++.++..|.||+++|+..|+.+++++|++++.+.+..+..|.||||.|+..|+.+
T Consensus        81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  160 (437)
T 1n11_A           81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR  160 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999998888888999999999999999999999888888888888889999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      ++++|+++|++++..+..|.|||++|+..++.+++++|++++..
T Consensus       161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  204 (437)
T 1n11_A          161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS  204 (437)
T ss_dssp             HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            99999988888888888888899999988888888888887653

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.6e-37  Score=212.08  Aligned_cols=157  Identities=41%  Similarity=0.598  Sum_probs=149.0

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q 028517           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (208)
Q Consensus        47 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  126 (208)
                      ++|+.||..|+.+++++|++.|.+   ++..+..|.|||+.|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad---vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD---VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence            479999999999999999998887   67788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          127 LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       127 ~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|.|||++|+..|+.+++++|++++++.
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.6e-38  Score=231.64  Aligned_cols=193  Identities=25%  Similarity=0.258  Sum_probs=179.3

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +++..+..+.++|+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+.   +. +..|
T Consensus        84 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~-~~~g  157 (285)
T 3d9h_A           84 AVNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV---QP-ESDL  157 (285)
T ss_dssp             CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---SC-SCTT
T ss_pred             CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC---CC-CCCC
Confidence            57788899999999999999999999999875  577888999999999999999999999999988763   22 3459


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~  161 (208)
                      .|||+.|+..|+.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++. +..|.||||+|+..|+.+
T Consensus       158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~  236 (285)
T 3d9h_A          158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEE  236 (285)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999984 888999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK  203 (208)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  203 (208)
                      ++++|+++|++++.+|.+|.||+++|+  ++.+++++|+++.
T Consensus       237 ~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~  276 (285)
T 3d9h_A          237 LACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLERE  276 (285)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence            999999999999999999999999999  5679999999873

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-37  Score=242.57  Aligned_cols=197  Identities=29%  Similarity=0.361  Sum_probs=131.2

Q ss_pred             ccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCc
Q 028517            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (208)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (208)
                      +..+..+.++|+.|+..|+.+++++|++.+  .++...+..|.||||+|+..|+.+++++|++.+.+   .+..+..|.|
T Consensus       173 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t  247 (437)
T 1n11_A          173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQGVT  247 (437)
T ss_dssp             TCCCSSCCCHHHHHHHTTCHHHHHHHGGGT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCC
Confidence            344445555555555555555555555443  23444455556666666666666666666655544   3445556677


Q ss_pred             HHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHH
Q 028517           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC  163 (208)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~  163 (208)
                      ||+.|+..|+.+++++|++++++++.++..|.||+|+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++
T Consensus       248 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v  327 (437)
T 1n11_A          248 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV  327 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       164 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      ++|+++|++++.++..|.||||+|+..|+.+++++|+++++.
T Consensus       328 ~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~  369 (437)
T 1n11_A          328 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS  369 (437)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCC
Confidence            777777777777777777777777777777777777776543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=9.6e-39  Score=233.91  Aligned_cols=199  Identities=25%  Similarity=0.282  Sum_probs=173.0

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHhh--hhhccCC----CCCCchHHHHHH---hcCCHHHHHHHHhccccccc----
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQL--LKSLSLR----NDDDRTLLHVAA---SCGHPEVVEILLSVDESANV----   73 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~--~~~~~~~----~~~g~t~L~~A~---~~g~~~~~~~ll~~~~~~~~----   73 (208)
                      +..++++|+.|++.|+.+.++.|++...  +.++...    +..|.||||+|+   ..|+.+++++|++.+.....    
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            4568899999999999997777776211  1233322    377999999999   77999999999997754221    


Q ss_pred             ----ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCC--------------CCCchHHHHHHHcCCHHHHHHHHH
Q 028517           74 ----VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------DGGRTALHYAASKGWLKIVELLIS  135 (208)
Q Consensus        74 ----~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~ll~  135 (208)
                          ....+..|.||||+|+..|+.+++++|+++|++++.++              ..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                33445589999999999999999999999999999988              589999999999999999999999


Q ss_pred             ---cCCCCCCCCCCCCcHHHHHHhhCC---------HHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHhCCcccc
Q 028517          136 ---RGAKINSKDKVGCTALHRGASTGN---------SALCELLIEEGAEV-------DATDKAGQTPLMNAVICYNKEFS  196 (208)
Q Consensus       136 ---~~~~~~~~~~~~~t~l~~A~~~~~---------~~~~~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~  196 (208)
                         +|++++..|..|.||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+..|+.+++
T Consensus       162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHH
Confidence               999999999999999999998887         79999999999988       67999999999999999999999


Q ss_pred             ccccccccc
Q 028517          197 GCSSSNKTW  205 (208)
Q Consensus       197 ~~l~~~~~~  205 (208)
                      ++|+++++.
T Consensus       242 ~~Ll~~g~~  250 (260)
T 3jxi_A          242 QHIIRREIA  250 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhCCC
Confidence            999998764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7e-37  Score=226.18  Aligned_cols=190  Identities=28%  Similarity=0.417  Sum_probs=169.7

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (208)
                      +..+.++|+.|++.|+.+++++|++.+  .++...+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.|||+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~  110 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFM  110 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTCCBHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCcccCCHHH
Confidence            666789999999999999999998765  46677788899999999999999999999987766   5667788999999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCC----------CCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGA  155 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~A~  155 (208)
                      .|+..|+.+++++|+++|.+++.+          +..|.||+++|+..|+.+++++|+++ |.+++..+..|.||||.|+
T Consensus       111 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~  190 (285)
T 1wdy_A          111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL  190 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            999999999999999999888877          66788999999999999999999987 8999999999999999999


Q ss_pred             hhCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccc
Q 028517          156 STGN----SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSS  201 (208)
Q Consensus       156 ~~~~----~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  201 (208)
                      ..++    .+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus       191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            9988    889999999999999999999999999999999999999998

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.8e-37  Score=227.60  Aligned_cols=188  Identities=25%  Similarity=0.301  Sum_probs=159.8

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccc-----------
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA-----------   71 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~-----------   71 (208)
                      ++..+..+.+|||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+...           
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ  115 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhc
Confidence            5778889999999999999999999999876  577888999999999999999999999999866431           


Q ss_pred             ---------------------------------ccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCC-CchH
Q 028517           72 ---------------------------------NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTA  117 (208)
Q Consensus        72 ---------------------------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~  117 (208)
                                                       ..++..+..|.||||.|+..|+.+++++|+++|++++.++.. |.||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tp  195 (282)
T 1oy3_D          116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP  195 (282)
T ss_dssp             ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCH
Confidence                                             114556778999999999999999999999999999998864 9999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCC
Q 028517          118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN  192 (208)
Q Consensus       118 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  192 (208)
                      ||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++.+|.||+++|.....
T Consensus       196 L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.1e-37  Score=221.30  Aligned_cols=199  Identities=25%  Similarity=0.269  Sum_probs=183.1

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (208)
                      ++..+..+.++|+.|++.|+.+++++|++.+  .++...+..|.||||+|+..|+.+++++|++.+...  ....+..+.
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~~   77 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV--DQLGGDLNS   77 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCBTTTTB
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc--hhhcCCcCC
Confidence            5667888999999999999999999999876  567788899999999999999999999999987764  334455689


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC-HH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN-SA  161 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~-~~  161 (208)
                      |||+.|+..|+.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++..+..|.|||+.|+..+. .+
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred             ChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997766 89


Q ss_pred             HHHHHHHcCCCCCCCCC-CCCCHHHHHHHhCCccccccccccccc
Q 028517          162 LCELLIEEGAEVDATDK-AGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      ++++|++.|++++..+. .|.||||+|+..|+.+++++|++++..
T Consensus       158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  202 (240)
T 3eu9_A          158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN  202 (240)
T ss_dssp             THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999987 999999999999999999999998654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-37  Score=231.90  Aligned_cols=194  Identities=30%  Similarity=0.399  Sum_probs=168.9

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (208)
                      +..+.++|+.|+..|+.+.+++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~tpL~  111 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLH  111 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHH
Confidence            456789999999999999999999876  47778899999999999999999999999998876   5677889999999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc-CCCC-------------------------
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKI-------------------------  140 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~-------------------------  140 (208)
                      +|+..|+.+++++|+++|++++.++..|.||+++|+..+..+++++++.. +.++                         
T Consensus       112 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (299)
T 1s70_B          112 AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN  191 (299)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcc
Confidence            99999999999999999999999999999999998888888888776643 3332                         


Q ss_pred             -CCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          141 -NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       141 -~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                       ...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++..
T Consensus       192 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad  257 (299)
T 1s70_B          192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD  257 (299)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Confidence             22456788999999999999999999998999988888899999999999999999999887654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-37  Score=238.84  Aligned_cols=202  Identities=21%  Similarity=0.237  Sum_probs=183.1

Q ss_pred             Cccccc-ccCcHHHHHHHHcCChHHHHHHHHH------hhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccc
Q 028517            2 DMDIDQ-TIKDKDLFKAAETGDSSTFKSLSKQ------QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVV   74 (208)
Q Consensus         2 ~~~~~~-~~~~~~l~~a~~~g~~~~~~~l~~~------~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~   74 (208)
                      +++..+ ..++++||.|+..|+.+++++|+..      ..+.+++..+..|.||||+|+..|+.+++++|++.+.+   +
T Consensus       116 ~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---~  192 (373)
T 2fo1_E          116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---P  192 (373)
T ss_dssp             TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---S
T ss_pred             cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC---C
Confidence            345666 6899999999999999999998742      12457788899999999999999999999999998877   5


Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHHhCC---CCCCCCCCCCchHHHHHHHcC---CHHHHHHHHHcCCCCCC------
Q 028517           75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKG---ADVNLKNDGGRTALHYAASKG---WLKIVELLISRGAKINS------  142 (208)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~------  142 (208)
                      +..+..|.||||.|+..|+.+++++|++++   .+++.++..|.||+|+|+..+   ..+++++|+++|++++.      
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~  272 (373)
T 2fo1_E          193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK  272 (373)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGT
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccccc
Confidence            667889999999999999999999999988   789999999999999999988   89999999999999876      


Q ss_pred             --CCCCCCcHHHHHHhhCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          143 --KDKVGCTALHRGASTGNSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       143 --~~~~~~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                        .+..|.||||.|+..|+.+++++|++++ ++++.+|..|.||||+|+..|+.+++++|+++++..
T Consensus       273 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  339 (373)
T 2fo1_E          273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV  339 (373)
T ss_dssp             SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence              5668999999999999999999999885 999999999999999999999999999999987653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=228.66  Aligned_cols=194  Identities=25%  Similarity=0.331  Sum_probs=180.3

Q ss_pred             CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (208)
Q Consensus        10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (208)
                      .+++++.|+..|+.+.++.++.......++..|..|.||||+|+..|+.+++++|++.+...  ++..+..|.|||+.|+
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~--~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK--VDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC--TTCCCTTSCCHHHHGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc--CCCCCCCCCCHHHHHH
Confidence            45677889999999999999988766668889999999999999999999999999988622  6778889999999999


Q ss_pred             -----hcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 028517           90 -----SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE  164 (208)
Q Consensus        90 -----~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~  164 (208)
                           ..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++++
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence                 668899999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-cCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          165 LLIE-EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       165 ~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      +|++ .|++++.+|.+|.|||++|+..|+.+++++|+++...
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            9999 8999999999999999999999999999999987653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.2e-37  Score=232.76  Aligned_cols=199  Identities=29%  Similarity=0.365  Sum_probs=181.2

Q ss_pred             cccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcH
Q 028517            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (208)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   84 (208)
                      ..+..+.++|+.|++.|+.+.++.++... +.+.+..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||
T Consensus        19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~   94 (351)
T 3utm_A           19 LTGEYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD---VHAKDKGGLVP   94 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCH
T ss_pred             eeccccchhHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCcH
Confidence            44567789999999999999999999765 567778899999999999999999999999998876   67778899999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------------------
Q 028517           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--------------------  144 (208)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~--------------------  144 (208)
                      ||.|+..|+.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++|++++..+                    
T Consensus        95 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~  174 (351)
T 3utm_A           95 LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT  174 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHH
Confidence            999999999999999999999999999999999999999999999999999999876544                    


Q ss_pred             ----------------------------------CCCCcHHHHHHhh---CCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 028517          145 ----------------------------------KVGCTALHRGAST---GNSALCELLIEEGAEVDATDKAGQTPLMNA  187 (208)
Q Consensus       145 ----------------------------------~~~~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  187 (208)
                                                        ..|.||||.|+..   +..+++++|+++|++++.++.+|.||||+|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  254 (351)
T 3utm_A          175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA  254 (351)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             hhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHH
Confidence                                              4567999999998   558999999999999999999999999999


Q ss_pred             HHhCCccccccccccccccC
Q 028517          188 VICYNKEFSGCSSSNKTWSG  207 (208)
Q Consensus       188 ~~~~~~~~~~~l~~~~~~~~  207 (208)
                      +..|+.+++++|++++...+
T Consensus       255 ~~~g~~~~v~~Ll~~ga~~n  274 (351)
T 3utm_A          255 AERAHNDVMEVLHKHGAKMN  274 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTT
T ss_pred             HHcCCHHHHHHHHHCCCCCC
Confidence            99999999999999876543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.9e-36  Score=212.32  Aligned_cols=165  Identities=28%  Similarity=0.345  Sum_probs=156.3

Q ss_pred             hhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCc
Q 028517           36 KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR  115 (208)
Q Consensus        36 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  115 (208)
                      ...+.++..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|+..++.+++++|+++|++++.++..|.
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  102 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK---LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK  102 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc---cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            34567899999999999999999999999998765   567788999999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccc
Q 028517          116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF  195 (208)
Q Consensus       116 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  195 (208)
                      ||+|+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..|+.++
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~  182 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV  182 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc
Q 028517          196 SGCSSSNK  203 (208)
Q Consensus       196 ~~~l~~~~  203 (208)
                      +++|++.+
T Consensus       183 v~~Ll~~~  190 (192)
T 2rfm_A          183 IKIFTEVR  190 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            99998764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.7e-35  Score=224.33  Aligned_cols=206  Identities=23%  Similarity=0.254  Sum_probs=161.6

Q ss_pred             Ccccccc-cCcHHHHHHHHcCChHHHHHHHHHhh-------------------------------hhhccCCCCCCchHH
Q 028517            2 DMDIDQT-IKDKDLFKAAETGDSSTFKSLSKQQL-------------------------------LKSLSLRNDDDRTLL   49 (208)
Q Consensus         2 ~~~~~~~-~~~~~l~~a~~~g~~~~~~~l~~~~~-------------------------------~~~~~~~~~~g~t~L   49 (208)
                      |++..+. .|.||||.|++.|+.+++++|++.+.                               ..+++..+..|.|||
T Consensus        50 dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l  129 (337)
T 4g8k_A           50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF  129 (337)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHH
T ss_pred             CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHH
Confidence            3444443 47788888888888888888887542                               113345567788888


Q ss_pred             HHHHhcCCHHHHHHHHhcccccccc-------cccCCCCCcHHHHHHhcCCHHHHHHHHh-CCCCCCCCCCCCchHHHHH
Q 028517           50 HVAASCGHPEVVEILLSVDESANVV-------NAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYA  121 (208)
Q Consensus        50 ~~A~~~g~~~~~~~ll~~~~~~~~~-------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~l~~a  121 (208)
                      |+|+..|+.++++++++.+.+....       ...+..|.||||.|+..|+.+++++|++ .|++++.++..|.++++.+
T Consensus       130 ~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~  209 (337)
T 4g8k_A          130 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA  209 (337)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHH
Confidence            8888888888888888777654321       2234567889999999999999999886 5888888888888888877


Q ss_pred             HHcCC----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCCcccc
Q 028517          122 ASKGW----LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYNKEFS  196 (208)
Q Consensus       122 ~~~~~----~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~~  196 (208)
                      +..+.    ..++++|+++|++++.++..|.||||.|+..|+.+++++|++. |++++.+|.+|.||||+|++.|+.+++
T Consensus       210 ~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv  289 (337)
T 4g8k_A          210 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA  289 (337)
T ss_dssp             HHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHH
Confidence            65443    3477888888889988888999999999999999999999975 899999999999999999999999999


Q ss_pred             ccccccccccC
Q 028517          197 GCSSSNKTWSG  207 (208)
Q Consensus       197 ~~l~~~~~~~~  207 (208)
                      ++|+++++..+
T Consensus       290 ~~Ll~~GAd~n  300 (337)
T 4g8k_A          290 ELLCKRGASTD  300 (337)
T ss_dssp             HHHHTTSCSST
T ss_pred             HHHHHCCCCCC
Confidence            99999887654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.1e-36  Score=216.58  Aligned_cols=180  Identities=26%  Similarity=0.317  Sum_probs=163.7

Q ss_pred             CChHHHHHHHHHhhhhhcc-CCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHH
Q 028517           21 GDSSTFKSLSKQQLLKSLS-LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM   99 (208)
Q Consensus        21 g~~~~~~~l~~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~   99 (208)
                      |+.+++++|++.+.  ++. ..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|+..|+.+++++
T Consensus         2 g~~~~i~~Ll~~g~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~   76 (223)
T 2f8y_A            2 DAPAVISDFIYQGA--SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD---ANIQDNMGRTPLHAAVSADAQGVFQI   76 (223)
T ss_dssp             ---CCEETTEETTC--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CcHHHHHHHHHcCC--CcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            67778888887662  333 3478999999999999999999999998776   56678899999999999999999999


Q ss_pred             HHhCCC-CCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCC
Q 028517          100 LLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK  178 (208)
Q Consensus       100 Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  178 (208)
                      |++.+. .++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.++.
T Consensus        77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  156 (223)
T 2f8y_A           77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  156 (223)
T ss_dssp             HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            999886 8888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhCCccccccccccccc
Q 028517          179 AGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       179 ~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      .|.||||+|+..|+.+++++|+++++.
T Consensus       157 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~  183 (223)
T 2f8y_A          157 REETPLFLAAREGSYETAKVLLDHFAN  183 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999998764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.3e-35  Score=202.32  Aligned_cols=157  Identities=28%  Similarity=0.398  Sum_probs=129.7

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 028517           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (208)
Q Consensus        44 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~  123 (208)
                      .|.||||.|+..|+.+++++|++.+..   ++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC---cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            467888888888888888888876644   56667788888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517          124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK  203 (208)
Q Consensus       124 ~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  203 (208)
                      .++.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+++|+..|+.+++++|+++.
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888887754

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=3e-35  Score=202.73  Aligned_cols=169  Identities=21%  Similarity=0.293  Sum_probs=130.1

Q ss_pred             cHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHh
Q 028517           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (208)
Q Consensus        11 ~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (208)
                      .++|+.|++.|+.+.++.|++.+ ....+..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSLAST   78 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---chhhcccCCCHHHHHHH
Confidence            46788888888888888888766 344666777888888888888888888888877665   45566778888888888


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC
Q 028517           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG  170 (208)
Q Consensus        91 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~  170 (208)
                      .++.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.|||++|+..|+.+++++|++++
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCCCCCCCH
Q 028517          171 AEVDATDKAGQTP  183 (208)
Q Consensus       171 ~~~~~~~~~g~t~  183 (208)
                      +++..++..|.||
T Consensus       159 ~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHSCC-------
T ss_pred             HHHhcccCCCCCC
Confidence            8777777777765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=5.6e-35  Score=200.85  Aligned_cols=160  Identities=38%  Similarity=0.538  Sum_probs=145.7

Q ss_pred             CCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 028517           41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (208)
Q Consensus        41 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  120 (208)
                      ....+.++|+.|+..|+.+++++|++.+.+   ++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGAD---VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence            345678899999999999999999988766   56678889999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517          121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS  200 (208)
Q Consensus       121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  200 (208)
                      |+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|+
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccc
Q 028517          201 SNK  203 (208)
Q Consensus       201 ~~~  203 (208)
                      +.+
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=7.6e-35  Score=200.67  Aligned_cols=158  Identities=27%  Similarity=0.366  Sum_probs=149.2

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHc
Q 028517           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (208)
Q Consensus        45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~  124 (208)
                      +.+|||.|+..|+.++++++++.+...  ++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGG--GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCccc--ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence            578999999999999999999876543  677788999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       125 ~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      ++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|++++.
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A           80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=6.7e-35  Score=198.99  Aligned_cols=157  Identities=28%  Similarity=0.335  Sum_probs=130.7

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 028517           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (208)
Q Consensus        44 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~  123 (208)
                      ...||||.|+..|+.+++++|++.+.+   ++..+..|.||||.|+. |+.+++++|+++|++++.++..|.||+|+|+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN---VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC---TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC---ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            456888888888888888888876655   56667788888888888 88888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517          124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE-VDATDKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       124 ~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      .++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||+++|+..|+.+++++|+++
T Consensus        80 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            8888888888888888888888888888888888888888888888887 478888888888888888888888888887


Q ss_pred             cc
Q 028517          203 KT  204 (208)
Q Consensus       203 ~~  204 (208)
                      ++
T Consensus       160 GA  161 (162)
T 1ihb_A          160 GA  161 (162)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-35  Score=221.08  Aligned_cols=183  Identities=30%  Similarity=0.412  Sum_probs=166.1

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +++..+..+.++||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|
T Consensus        65 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g  139 (299)
T 1s70_B           65 DINYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH---VGAVNSEG  139 (299)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC---CCCcCCCC
Confidence            56778889999999999999999999999865  57788899999999999999999999999998876   56678899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhC-CCC--------------------------CCCCCCCCchHHHHHHHcCCHHHHHHHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSK-GAD--------------------------VNLKNDGGRTALHYAASKGWLKIVELLI  134 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~-~~~--------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~ll  134 (208)
                      .|||+.|+..++.+++++++.. +.+                          ....+..|.||||+|+..|+.+++++|+
T Consensus       140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  219 (299)
T 1s70_B          140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI  219 (299)
T ss_dssp             CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence            9999999999999999887763 332                          2235668999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 028517          135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI  189 (208)
Q Consensus       135 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~  189 (208)
                      ++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+.
T Consensus       220 ~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             HcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999965

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.5e-34  Score=217.92  Aligned_cols=197  Identities=29%  Similarity=0.320  Sum_probs=172.2

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhh--------hccCCCCCCchHHHHHHhcCCHHHHHHHHh-cccccc
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK--------SLSLRNDDDRTLLHVAASCGHPEVVEILLS-VDESAN   72 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~--------~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~-~~~~~~   72 (208)
                      +++..+..+.++++.|+..|+.++++++++.+...        .....+..|.||||+|+..|+.+++++|++ .+.+  
T Consensus       117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad--  194 (337)
T 4g8k_A          117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD--  194 (337)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC--
T ss_pred             hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC--
Confidence            56778889999999999999999999999876321        122345678999999999999999999996 4555  


Q ss_pred             cccccCCCCCcHHHHHHhcCC----HHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCC
Q 028517           73 VVNAVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVG  147 (208)
Q Consensus        73 ~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~  147 (208)
                       ++..+..|.|+++.++..+.    .+++++|+++|++++.++..|.||||+|+..+..++++.|++. |++++.+|..|
T Consensus       195 -~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G  273 (337)
T 4g8k_A          195 -VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG  273 (337)
T ss_dssp             -TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTS
T ss_pred             -cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCC
Confidence             67788899999998765433    4688999999999999999999999999999999999999985 89999999999


Q ss_pred             CcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       148 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      .||||+|+..|+.+++++|+++|++++.     .+||++|++.|+.++|++|+++++..
T Consensus       274 ~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~~  327 (337)
T 4g8k_A          274 KTALLLAVELKLKKIAELLCKRGASTDC-----GDLVMTARRNYDHSLVKVLLSHGAKE  327 (337)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHTTSCSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCCC
Confidence            9999999999999999999999999875     46999999999999999999998754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.6e-35  Score=212.06  Aligned_cols=187  Identities=24%  Similarity=0.256  Sum_probs=169.0

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccc---ccccccC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA---NVVNAVD   78 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~---~~~~~~~   78 (208)
                      +++..+..+.++|+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+..+   ...+..+
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  114 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence            46778889999999999999999999999765  577888999999999999999999999999987642   2356677


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCC-CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh
Q 028517           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST  157 (208)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~  157 (208)
                      ..|.||||.|+..|+.+++++|+++|++++.++. .|.||+|+|+..|+.+++++|+++|++++..+..|.|||++|+..
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  194 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR  194 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHcc
Confidence            8899999999999999999999999999999997 999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHh
Q 028517          158 GNSALCELLIEEGAEVD--ATDKAGQTPLMNAVIC  190 (208)
Q Consensus       158 ~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~~A~~~  190 (208)
                      |+.+++++|+++|++..  .++..|.|+.+.+...
T Consensus       195 ~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          195 PSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             SCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             CchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            99999999999999875  7888899887765443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=7.7e-35  Score=199.35  Aligned_cols=161  Identities=32%  Similarity=0.475  Sum_probs=133.9

Q ss_pred             CCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 028517           41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (208)
Q Consensus        41 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  120 (208)
                      .+..+.|||+.|+..|+.+++++|++.+..  ..+..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence            356678888888888888888888874432  255666778888888888888888888888888888888888899999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517          121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS  200 (208)
Q Consensus       121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  200 (208)
                      |+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|.+|.||+++|+. ++.+++++|.
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            998888999999998888888888888899999999899999999998888888888889999988776 8888888888


Q ss_pred             cccc
Q 028517          201 SNKT  204 (208)
Q Consensus       201 ~~~~  204 (208)
                      ++++
T Consensus       161 ~~gA  164 (165)
T 3twr_A          161 GDAA  164 (165)
T ss_dssp             TC--
T ss_pred             hccc
Confidence            8764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-34  Score=193.89  Aligned_cols=151  Identities=32%  Similarity=0.423  Sum_probs=132.2

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHc
Q 028517           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (208)
Q Consensus        45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~  124 (208)
                      ..++|+.|+..|+.+++++|++.+...   + .+..|.||||.|+..|+.+++++|++.|++++.++..|.||+|+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~---~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF---T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC---C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC---C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            357888999999999999888877642   2 467788999999999999999999998888888888899999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccc
Q 028517          125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCS  199 (208)
Q Consensus       125 ~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  199 (208)
                      ++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..|+.+++++|
T Consensus        78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999988888899999999999999999999999999999999999999999999999988876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=9.5e-34  Score=198.52  Aligned_cols=163  Identities=26%  Similarity=0.291  Sum_probs=153.4

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (208)
                      .+..+..+.++|+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~  102 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSGK  102 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTSC
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCC
Confidence            4567889999999999999999999999876  47778889999999999999999999999998776   567788999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~  162 (208)
                      ||||.|+..++.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||+++|+..|+.++
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~  182 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV  182 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 028517          163 CELLIEEG  170 (208)
Q Consensus       163 ~~~Ll~~~  170 (208)
                      +++|+++|
T Consensus       183 v~~Ll~~~  190 (192)
T 2rfm_A          183 IKIFTEVR  190 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            99999864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5e-35  Score=217.02  Aligned_cols=188  Identities=15%  Similarity=0.130  Sum_probs=169.4

Q ss_pred             ccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC-C
Q 028517            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG-W   82 (208)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~-~   82 (208)
                      |+....+.+|||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..| .
T Consensus        56 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~~  130 (285)
T 3kea_A           56 LKNLLENEFPLHQAATLEDTKIVKILLFSG--LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWK  130 (285)
T ss_dssp             GGSCCTTCCHHHHHTTSSSCHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG---GGGCSSSGGG
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCccCCCCCC
Confidence            334445899999999999999999999876  57778899999999999999999999999998876   56777788 7


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH-HHHHHhhCCHH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA-LHRGASTGNSA  161 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~-l~~A~~~~~~~  161 (208)
                      ||||.|+..|+.+++++|+++|.+.... ..|.||+|+|+..|+.+++++|+++|++++..+..|.|| ||+|+..|+.+
T Consensus       131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~  209 (285)
T 3kea_A          131 TSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIE  209 (285)
T ss_dssp             SHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHH
Confidence            9999999999999999999999876322 289999999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      ++++|+++|++++..+.       .|+..|+.+++++|++++.
T Consensus       210 ~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~  245 (285)
T 3kea_A          210 MLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHV  245 (285)
T ss_dssp             HHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCC
Confidence            99999999999998873       5678999999999998764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.6e-33  Score=192.13  Aligned_cols=158  Identities=31%  Similarity=0.442  Sum_probs=146.1

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (208)
                      ...++|+.|++.|+.+++++|++.+  .+++..+..|.||||+|+. |+.+++++|++.+.+   ++..+..|.||||.|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN---PDLKDRTGFAVIHDA   77 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC---CCCCCCCCCCHHHHH
Confidence            4679999999999999999999755  5777889999999999999 999999999998776   567788999999999


Q ss_pred             HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGNSALCELLI  167 (208)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~t~l~~A~~~~~~~~~~~Ll  167 (208)
                      +..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++ ++..+..|.|||++|+..|+.+++++|+
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998 5889999999999999999999999999


Q ss_pred             HcCCC
Q 028517          168 EEGAE  172 (208)
Q Consensus       168 ~~~~~  172 (208)
                      ++|+|
T Consensus       158 ~~GAd  162 (162)
T 1ihb_A          158 ANGAG  162 (162)
T ss_dssp             HTC--
T ss_pred             HhCCC
Confidence            99975

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=5.3e-33  Score=190.97  Aligned_cols=158  Identities=40%  Similarity=0.565  Sum_probs=147.6

Q ss_pred             ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHH
Q 028517            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (208)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~   87 (208)
                      ..+.++|+.|++.|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~   86 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD---VNAVDHAGMTPLRL   86 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHH
Confidence            44578999999999999999999876  57778899999999999999999999999998776   56778899999999


Q ss_pred             HHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI  167 (208)
Q Consensus        88 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll  167 (208)
                      |+..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||++.|+..|+.+++++|+
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcC
Q 028517          168 EEG  170 (208)
Q Consensus       168 ~~~  170 (208)
                      ++|
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=1.8e-33  Score=195.02  Aligned_cols=168  Identities=26%  Similarity=0.329  Sum_probs=143.7

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (208)
                      .+.++|+.|++.|+.+.+++|++.. +.+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---INVMNRGDDTPLHLA   79 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCCHHHHH
Confidence            4567889999999999999998875 456777888899999999999999999999988766   566777889999999


Q ss_pred             HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH
Q 028517           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE  168 (208)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~  168 (208)
                      +..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||++.|+..++.+++++|++
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888899999999999999999999999999998889999999999998889999999999


Q ss_pred             cCCCCCCCCCCC
Q 028517          169 EGAEVDATDKAG  180 (208)
Q Consensus       169 ~~~~~~~~~~~g  180 (208)
                      +|++++..+..+
T Consensus       160 ~g~~~~~~~~~~  171 (179)
T 3f6q_A          160 MGQNLNRIPYKD  171 (179)
T ss_dssp             TTCCCSCBCCCC
T ss_pred             hhcCcccCCccc
Confidence            998887765443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.8e-33  Score=191.93  Aligned_cols=160  Identities=23%  Similarity=0.294  Sum_probs=150.1

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (208)
                      .+.++||.|++.|+.+.+++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   76 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD---PQLLGKGRESALSLA   76 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCcCCCCCcHHHHH
Confidence            4789999999999999999999876  56788899999999999999999999999998776   566788999999999


Q ss_pred             HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH
Q 028517           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE  168 (208)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~  168 (208)
                      +..++.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||+++|+..|+.+++++|++
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           77 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 028517          169 EGAEV  173 (208)
Q Consensus       169 ~~~~~  173 (208)
                      ++.++
T Consensus       157 ~~~~~  161 (167)
T 3v31_A          157 HLLKL  161 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            86544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=1.7e-33  Score=190.86  Aligned_cols=154  Identities=26%  Similarity=0.383  Sum_probs=130.0

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHc
Q 028517           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (208)
Q Consensus        45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~  124 (208)
                      +.|||+.|+..|+.+++++|++. . ....+..+..|.||||. +..|+.+++++|+++|++++.++..|.||+|+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-E-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-T-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-h-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            46788888888888888888876 2 11256677788888888 888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517          125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       125 ~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      |+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++ ++++.++.+|.||+++|+..|+.+++++|+++
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            888888888888888888888888888888888888888888888 88888888888888888888888888888765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-34  Score=217.18  Aligned_cols=178  Identities=18%  Similarity=0.179  Sum_probs=147.2

Q ss_pred             Cccc-ccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCC---HHHHHHHHhccccccccccc
Q 028517            2 DMDI-DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH---PEVVEILLSVDESANVVNAV   77 (208)
Q Consensus         2 ~~~~-~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~~~~ll~~~~~~~~~~~~   77 (208)
                      |++. .+..+.+|||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..|+   .++++.|++.+..  .++..
T Consensus       122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G--ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~--~~~~~  197 (327)
T 1sw6_A          122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP--CLILE  197 (327)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG--GGGEE
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc--cccCC
Confidence            5677 7899999999999999999999999876  5788889999999999999998   5666777665422  26778


Q ss_pred             CCCCCcHHHHHHh----cCCHHHHHHHHhC--------------------CCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q 028517           78 DEEGWAPIHSAAS----IGNVTIVEMLLSK--------------------GADVNLKNDGGRTALHYAASKGWLKIVELL  133 (208)
Q Consensus        78 ~~~~~~~l~~a~~----~~~~~~~~~Ll~~--------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  133 (208)
                      +..|.||||+|+.    .|+.+++++|++.                    |++++.++..|.||++.|+.      +++|
T Consensus       198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~L  271 (327)
T 1sw6_A          198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWI  271 (327)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHH
T ss_pred             CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHH
Confidence            8899999999999    8999999999987                    88999999999999999985      8899


Q ss_pred             HHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 028517          134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY  191 (208)
Q Consensus       134 l~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~  191 (208)
                      +++  +++.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|
T Consensus       272 l~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          272 IAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            988  57789999999999999999999999999999999999999999999998764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=1e-33  Score=196.33  Aligned_cols=161  Identities=29%  Similarity=0.385  Sum_probs=149.6

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 028517           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (208)
Q Consensus        43 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~  122 (208)
                      ..+.++|+.|+..|+.+++++|++.+..  .++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            3578999999999999999999986433  26778889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517          123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       123 ~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      ..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|++.
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~  160 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM  160 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ccc
Q 028517          203 KTW  205 (208)
Q Consensus       203 ~~~  205 (208)
                      +..
T Consensus       161 g~~  163 (179)
T 3f6q_A          161 GQN  163 (179)
T ss_dssp             TCC
T ss_pred             hcC
Confidence            754

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=2.3e-33  Score=192.01  Aligned_cols=162  Identities=34%  Similarity=0.444  Sum_probs=147.5

Q ss_pred             cccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcH
Q 028517            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (208)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   84 (208)
                      ..+..+.++|+.|++.|+.+.+++|++.. ..+....+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~   78 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAKDKGGLVP   78 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC---CCccCCCCCCH
Confidence            34677899999999999999999999765 466677788899999999999999999999998876   67778899999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 028517           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE  164 (208)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~  164 (208)
                      ||.|+..++.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||+++|+. ++.++++
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~  157 (165)
T 3twr_A           79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQD  157 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999877 9999999


Q ss_pred             HHHHcCC
Q 028517          165 LLIEEGA  171 (208)
Q Consensus       165 ~Ll~~~~  171 (208)
                      +|+++|+
T Consensus       158 ~L~~~gA  164 (165)
T 3twr_A          158 LLRGDAA  164 (165)
T ss_dssp             HHHTC--
T ss_pred             HHhhccc
Confidence            9999875

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.3e-34  Score=221.66  Aligned_cols=160  Identities=18%  Similarity=0.228  Sum_probs=144.2

Q ss_pred             CCCCCchHHHHHHhcC--CHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCC-----CCCCCCC
Q 028517           41 RNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD-----VNLKNDG  113 (208)
Q Consensus        41 ~~~~g~t~L~~A~~~g--~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~  113 (208)
                      .+..|.||||+|+..|  +.+++++|++.+.+   ++..+..|.||||.|+..|+.+++++|+++|++     ++.++..
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~  210 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGAS---PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ  210 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence            5667899999999999  99999999998776   567788999999999999999999999999988     9999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCC------------CCCCCCC
Q 028517          114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD------------ATDKAGQ  181 (208)
Q Consensus       114 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~------------~~~~~g~  181 (208)
                      |.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|+++|++++            ..+..+.
T Consensus       211 g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (364)
T 3ljn_A          211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW  290 (364)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999986642            2456789


Q ss_pred             CHHHHHHHhCCccccccccccc
Q 028517          182 TPLMNAVICYNKEFSGCSSSNK  203 (208)
Q Consensus       182 t~l~~A~~~~~~~~~~~l~~~~  203 (208)
                      +|+++|+..+..+.+..|++++
T Consensus       291 ~~l~~aa~~~~~~~v~~ll~~~  312 (364)
T 3ljn_A          291 LDFVPAAADPSKQEVLQLLQEK  312 (364)
T ss_dssp             CTTSCSSCCHHHHHHHHHHHHH
T ss_pred             ccchhhhhccCHHHHHHHHHHH
Confidence            9999999988777777766543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.5e-32  Score=193.56  Aligned_cols=165  Identities=26%  Similarity=0.324  Sum_probs=152.6

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +++..+..+.++|+.|++.|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+..  .++..+..|
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~g  106 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG--ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP--DLNKHNRYG  106 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC--CTTCCCTTS
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc--ccccccCCC
Confidence            56778889999999999999999999999876  57788899999999999999999999999954332  267778899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCC-CCCCCCCCCCchHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGW-----LKIVELLISRGAKINSKDKVGCTALHRGA  155 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~~~~~~~~~~~~~t~l~~A~  155 (208)
                      .||||.|+..|+.+++++|+++| .+++.++..|.||+|+|+..+.     .+++++|+++|++++..+..|.|||++|+
T Consensus       107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  186 (201)
T 3hra_A          107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN  186 (201)
T ss_dssp             CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Confidence            99999999999999999999999 8999999999999999999998     99999999999999999999999999999


Q ss_pred             hhCCHHHHHHHHHcC
Q 028517          156 STGNSALCELLIEEG  170 (208)
Q Consensus       156 ~~~~~~~~~~Ll~~~  170 (208)
                      ..|+.+++++|+++|
T Consensus       187 ~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          187 QKGYTEISKILAQYN  201 (201)
T ss_dssp             HHTCHHHHHHHHTCC
T ss_pred             HcCCHhHHHHHHhcC
Confidence            999999999999876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=6.2e-32  Score=182.69  Aligned_cols=151  Identities=36%  Similarity=0.471  Sum_probs=141.0

Q ss_pred             CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (208)
Q Consensus        10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (208)
                      ..++|+.|++.|+.+.+++|++.+.  +.. .+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~   75 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCC--CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHH
Confidence            3589999999999999999998873  333 578899999999999999999999998766   5677889999999999


Q ss_pred             hcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      ..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||++.|+..|+.+++++|
T Consensus        76 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.5e-32  Score=202.43  Aligned_cols=176  Identities=22%  Similarity=0.274  Sum_probs=145.6

Q ss_pred             ccccCcHHHHHHHHc---CChHHHHHHHHHhhhh-------h--ccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccc
Q 028517            6 DQTIKDKDLFKAAET---GDSSTFKSLSKQQLLK-------S--LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV   73 (208)
Q Consensus         6 ~~~~~~~~l~~a~~~---g~~~~~~~l~~~~~~~-------~--~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~   73 (208)
                      .+..+.++||.|+..   |+.+++++|++.+...       +  ....+..|.||||+|+..|+.+++++|++.+.+.  
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~--  127 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV--  127 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT--
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc--
Confidence            377899999999987   9999999999986321       1  1225678999999999999999999999988774  


Q ss_pred             ccccCC--------------CCCcHHHHHHhcCCHHHHHHHHh---CCCCCCCCCCCCchHHHHHHHcCC---------H
Q 028517           74 VNAVDE--------------EGWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAASKGW---------L  127 (208)
Q Consensus        74 ~~~~~~--------------~~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~l~~a~~~~~---------~  127 (208)
                       +..+.              .|.||||.|+..|+.+++++|++   .|++++.++..|.||||+|+..++         .
T Consensus       128 -~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~  206 (273)
T 2pnn_A          128 -QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT  206 (273)
T ss_dssp             -TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred             -CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence             44444              79999999999999999999999   999999999999999999999888         7


Q ss_pred             HHHHHHHHcCCCCC-------CCCCCCCcHHHHHHhhCCHHHHHHHHHcCC-CCCCCCCCCCCHH
Q 028517          128 KIVELLISRGAKIN-------SKDKVGCTALHRGASTGNSALCELLIEEGA-EVDATDKAGQTPL  184 (208)
Q Consensus       128 ~~~~~ll~~~~~~~-------~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l  184 (208)
                      +++++|+++|++++       ..+..|.||||+|+..|+.+++++|+++|+ |+......+.+|-
T Consensus       207 ~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            99999999999886       488999999999999999999999999998 8887777666653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=5.1e-32  Score=183.60  Aligned_cols=154  Identities=27%  Similarity=0.391  Sum_probs=145.0

Q ss_pred             CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (208)
Q Consensus        10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (208)
                      +.++|+.|++.|+.+.+++|++. ...+++..+..|.||||+ +..|+.+++++|++.+.+   ++..+..|.||||.|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS---PNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHH
Confidence            46899999999999999999987 356778889999999999 999999999999998876   5777889999999999


Q ss_pred             hcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHc
Q 028517           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (208)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  169 (208)
                      ..|+.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++ ++++..+..|.|||++|+..|+.+++++|+++
T Consensus        77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999 99999999999999999999999999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=211.92  Aligned_cols=189  Identities=23%  Similarity=0.255  Sum_probs=165.0

Q ss_pred             ccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCc
Q 028517            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (208)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (208)
                      +..+..+.++|+.|++.|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.|
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t   89 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVDFLITAGAN---VNSPDSHGWT   89 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCC
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCC
Confidence            344566778899999999999999999866  47778899999999999999999999999998776   6777889999


Q ss_pred             HHHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCchHHHHH--HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH
Q 028517           84 PIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYA--ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS  160 (208)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~  160 (208)
                      |||+|+..|+.+++++|++.|++++.++ ..|.||+++|  +..++.+++++|+++|++++..+..+.||++.++..+. 
T Consensus        90 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~-  168 (229)
T 2vge_A           90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG-  168 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc-
Confidence            9999999999999999999999999886 5999999999  89999999999999999999999888899885554433 


Q ss_pred             HHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517          161 ALCELLIEEGAE--VDATDKAGQTPLMNAVICYNKEFSGCSS  200 (208)
Q Consensus       161 ~~~~~Ll~~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~l~  200 (208)
                        .++|++.|++  ++.+|.+|.||||+|+..|+.++|+.++
T Consensus       169 --~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          169 --DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             --TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             --cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence              2567788888  6778999999999999999999998644

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.7e-32  Score=197.52  Aligned_cols=165  Identities=19%  Similarity=0.207  Sum_probs=147.5

Q ss_pred             ccccCcHHHHHHHHc---CChHHHHHHHHHhhhhh---------ccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccc
Q 028517            6 DQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKS---------LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV   73 (208)
Q Consensus         6 ~~~~~~~~l~~a~~~---g~~~~~~~l~~~~~~~~---------~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~   73 (208)
                      .+..+.++||.|+..   |+.+++++|++.+....         ....+..|.||||+|+..|+.+++++|++.+.+   
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---  115 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD---  115 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC---
Confidence            688999999999999   99999999998774221         012346799999999999999999999998877   


Q ss_pred             ccccCCC-------------CCcHHHHHHhcCCHHHHHHHHh---CCCCCCCCCCCCchHHHHHHH--cCCHH-------
Q 028517           74 VNAVDEE-------------GWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAAS--KGWLK-------  128 (208)
Q Consensus        74 ~~~~~~~-------------~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~l~~a~~--~~~~~-------  128 (208)
                      ++..+..             |.||||.|+..|+.+++++|++   +|++++.+|..|.||||+|+.  .++.+       
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~  195 (256)
T 2etb_A          116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH  195 (256)
T ss_dssp             TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred             CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence            4445544             9999999999999999999999   999999999999999999999  78888       


Q ss_pred             HHHHHHHcCCCC-------CCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCC
Q 028517          129 IVELLISRGAKI-------NSKDKVGCTALHRGASTGNSALCELLIEEGAEV  173 (208)
Q Consensus       129 ~~~~ll~~~~~~-------~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~  173 (208)
                      ++++|+++|+++       +..|..|.||||+|+..|+.+++++|+++|.+.
T Consensus       196 iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            999999999999       889999999999999999999999999987654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=9.6e-32  Score=198.47  Aligned_cols=164  Identities=24%  Similarity=0.319  Sum_probs=152.7

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHH-----hcCCHHHHHHHHhccccccccccc
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA-----SCGHPEVVEILLSVDESANVVNAV   77 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~-----~~g~~~~~~~ll~~~~~~~~~~~~   77 (208)
                      ++..|..|.|+||.|++.|+.+++++|++.+ ..+++..+..|.||||+|+     ..++.+++++|++.+..   ....
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~---~~~~  179 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSG-VCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI---NAKA  179 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT---TCCC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC---cccc
Confidence            5778999999999999999999999999877 3477788999999999999     66889999999988755   5667


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHh
Q 028517           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGCTALHRGAS  156 (208)
Q Consensus        78 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~t~l~~A~~  156 (208)
                      +..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|++++..|..|.|||++|+.
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~  259 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD  259 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH
Confidence            7789999999999999999999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             hCCHHHHHHHHHcC
Q 028517          157 TGNSALCELLIEEG  170 (208)
Q Consensus       157 ~~~~~~~~~Ll~~~  170 (208)
                      .|+.+++++|++++
T Consensus       260 ~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          260 AGQSEIASMLYSRM  273 (276)
T ss_dssp             HTCHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHhcc
Confidence            99999999999873

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.2e-32  Score=199.39  Aligned_cols=188  Identities=19%  Similarity=0.187  Sum_probs=138.7

Q ss_pred             cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (208)
                      +..|.++|+.|++.|+.+.++.|++.+.  +.+. +..|.||||.|+..|+.+++++|++.+.+   ++..+..|.||||
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~--~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~t~L~   75 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGM--RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITALH   75 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS---CCCCCTTSCCHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCC--Cccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHH
Confidence            3468999999999999999999998774  4333 46789999999999999999999988775   6777889999999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHH--HhhCCHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGC-TALHRG--ASTGNSALC  163 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-t~l~~A--~~~~~~~~~  163 (208)
                      .|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..+. ||++.|  +..|+.+++
T Consensus        76 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           76 NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988776 999999  788999999


Q ss_pred             HHHHHcCCCCCCC---------CCCCCCHHHHHHHhCCcccccccccc
Q 028517          164 ELLIEEGAEVDAT---------DKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       164 ~~Ll~~~~~~~~~---------~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      ++|+++|++++..         +..+.++.+++...|.  +++.|...
T Consensus       156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~  201 (239)
T 1ycs_B          156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRE  201 (239)
T ss_dssp             HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCC
T ss_pred             HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEec
Confidence            9999999888765         5678899998888776  56666543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.9e-31  Score=195.11  Aligned_cols=165  Identities=24%  Similarity=0.229  Sum_probs=146.2

Q ss_pred             ccCcHHHHHHH---HcCChHHHHHHHHHhhh---------hhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccccc
Q 028517            8 TIKDKDLFKAA---ETGDSSTFKSLSKQQLL---------KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN   75 (208)
Q Consensus         8 ~~~~~~l~~a~---~~g~~~~~~~l~~~~~~---------~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~   75 (208)
                      ..+.++||.|+   +.|+.+++++|++.+..         ......+..|.||||+|+..|+.+++++|++.+.+.   +
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~  120 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV---H  120 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT---T
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc---C
Confidence            56999999999   78999999999987632         223344558999999999999999999999988774   4


Q ss_pred             ccC--------------CCCCcHHHHHHhcCCHHHHHHHHh---CCCCCCCCCCCCchHHHHHHHcCC---------HHH
Q 028517           76 AVD--------------EEGWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAASKGW---------LKI  129 (208)
Q Consensus        76 ~~~--------------~~~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~l~~a~~~~~---------~~~  129 (208)
                      ..+              ..|.||||.|+..|+.+++++|++   +|++++.+|..|.||||+|+..++         .++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~  200 (260)
T 3jxi_A          121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM  200 (260)
T ss_dssp             CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence            444              579999999999999999999999   999999999999999999998887         799


Q ss_pred             HHHHHHcCCCC-------CCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCC
Q 028517          130 VELLISRGAKI-------NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA  175 (208)
Q Consensus       130 ~~~ll~~~~~~-------~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~  175 (208)
                      +++|+++|+++       +..+..|.||||+|+..|+.+++++|+++|.+...
T Consensus       201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence            99999999988       67899999999999999999999999999876543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=6.4e-32  Score=195.47  Aligned_cols=160  Identities=23%  Similarity=0.235  Sum_probs=120.1

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (208)
Q Consensus        42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (208)
                      +..|.||||.|+..++.+.++.|++.|.+..   . +..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~---~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---F-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA   77 (239)
T ss_dssp             ---------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc---c-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            3468999999999999999999999887743   2 35789999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHH--HHhCCcccccc
Q 028517          122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ-TPLMNA--VICYNKEFSGC  198 (208)
Q Consensus       122 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~~~  198 (208)
                      +..|+.+++++|+++|++++..|..|.||||.|+..|+.+++++|+++|++++..+..|. ||+|+|  +..|+.+++++
T Consensus        78 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998777 999999  88999999999


Q ss_pred             ccccccc
Q 028517          199 SSSNKTW  205 (208)
Q Consensus       199 l~~~~~~  205 (208)
                      |++.++.
T Consensus       158 Ll~~~a~  164 (239)
T 1ycs_B          158 LYGVQEK  164 (239)
T ss_dssp             HHHHHHH
T ss_pred             HHHhhhc
Confidence            9987653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=1.1e-30  Score=177.06  Aligned_cols=145  Identities=23%  Similarity=0.332  Sum_probs=118.5

Q ss_pred             cCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCch-H
Q 028517           39 SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT-A  117 (208)
Q Consensus        39 ~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~  117 (208)
                      ...+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|+ .|+.+++++|+++|++++.++..|.| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC---TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            34577899999999999999999999998766   6677889999999985 89999999999999999999999999 9


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 028517          118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA  187 (208)
Q Consensus       118 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  187 (208)
                      ||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999987744

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=4.7e-30  Score=170.13  Aligned_cols=130  Identities=25%  Similarity=0.354  Sum_probs=73.0

Q ss_pred             ccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCC-Cch
Q 028517           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRT  116 (208)
Q Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~  116 (208)
                      ++..+..|.||||.|+..|+.+++++|++.+.+   ++..+..|.||||.|+. ++.+++++|+++|++++.++.. |.|
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC---cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            344455555555555555555555555555443   34444555555555555 5555555555555555555555 555


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCC
Q 028517          117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA  171 (208)
Q Consensus       117 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~  171 (208)
                      |+|+|+..++.+++++|+++|++++..+..|.|||++|+..++.+++++|+++|+
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            5555555555555555555555555555555555555555555555555555554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.1e-31  Score=201.09  Aligned_cols=179  Identities=18%  Similarity=0.107  Sum_probs=145.2

Q ss_pred             HHHHHcCChHHHHHHHHHhhhhhccC-CCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCC
Q 028517           15 FKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN   93 (208)
Q Consensus        15 ~~a~~~g~~~~~~~l~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~   93 (208)
                      +.|+..+..++++.|++.+  .+++. .+..|.||||+|+..|+.+++++|++.|++   ++..+..|.||||+|+..|+
T Consensus       102 ~~a~~~~~~~~~~~l~~~g--~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---~n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSC--CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTBCCTTCCCHHHHHHHSSH
T ss_pred             HHHHHhhHHHHHHHHHhcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhcc
Confidence            5566666666666666544  57777 799999999999999999999999999877   56788899999999999998


Q ss_pred             ---HHHHHHHHhCC-CCCCCCCCCCchHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCCCCC
Q 028517           94 ---VTIVEMLLSKG-ADVNLKNDGGRTALHYAAS----KGWLKIVELLISR--------------------GAKINSKDK  145 (208)
Q Consensus        94 ---~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~ll~~--------------------~~~~~~~~~  145 (208)
                         .++++.|++.+ .+++.++..|.||||+|+.    .|+.+++++|++.                    |++++..+.
T Consensus       177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~  256 (327)
T 1sw6_A          177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG  256 (327)
T ss_dssp             HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred             cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc
Confidence               78888888876 6788899999999999999    8999999999987                    889999999


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       146 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      .|.|||+.|+.      +++|+++  +++.++.+|.||||+|+..|+.+++++|+++++..
T Consensus       257 ~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~  309 (327)
T 1sw6_A          257 ERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP  309 (327)
T ss_dssp             ---CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred             cCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999985      8999998  68889999999999999999999999999987654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=1.5e-30  Score=172.58  Aligned_cols=130  Identities=26%  Similarity=0.294  Sum_probs=125.8

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHH
Q 028517           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALH  152 (208)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~l~  152 (208)
                      ++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+. ++.+++++|+++|++++..+.. |.||||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~   83 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVH   83 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHH
Confidence            56778899999999999999999999999999999999999999999999 9999999999999999999999 999999


Q ss_pred             HHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          153 RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       153 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      +|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|+++++
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999998775

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.97  E-value=5.6e-31  Score=183.33  Aligned_cols=152  Identities=18%  Similarity=0.129  Sum_probs=107.8

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhcccccccccccC-CCCCcHHHHHHhcCCH----HHHHHHHhCCCCCCCCCCCCchHHH
Q 028517           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNV----TIVEMLLSKGADVNLKNDGGRTALH  119 (208)
Q Consensus        45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~l~  119 (208)
                      ++++|+.|+..|+.+.++.++..+.     +..+ ..|.||||+|+..++.    +++++|+++|++++.++..|.||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~-----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY-----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS-----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc-----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            3456777777777777777665432     2222 4577777777777764    4777777777777777777777777


Q ss_pred             HHHHcCC------HHHHHHHHHcCCCCCCCCCCCC-cHHHHHHhhC-----CHHHHHHHHH-cCCCCCCCCCCCCCHHHH
Q 028517          120 YAASKGW------LKIVELLISRGAKINSKDKVGC-TALHRGASTG-----NSALCELLIE-EGAEVDATDKAGQTPLMN  186 (208)
Q Consensus       120 ~a~~~~~------~~~~~~ll~~~~~~~~~~~~~~-t~l~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~  186 (208)
                      +|+..++      .+++++|+++|++++.+|..|. ||||+|+..+     ..+++++|++ +|++++.+|..|.||||+
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~  160 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF  160 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHH
Confidence            7777665      4667777777777777777777 7777777743     3457777777 777777777777888888


Q ss_pred             HHHhCCccccccccc
Q 028517          187 AVICYNKEFSGCSSS  201 (208)
Q Consensus       187 A~~~~~~~~~~~l~~  201 (208)
                      |++.++.+++++|..
T Consensus       161 A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          161 VKRCQKPIALKMMED  175 (186)
T ss_dssp             HHTTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHH
Confidence            877777777777765

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=3e-29  Score=166.23  Aligned_cols=124  Identities=34%  Similarity=0.474  Sum_probs=89.7

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 028517           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (208)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~  158 (208)
                      ..+.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            34566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517          159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       159 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      +.+++++|+++|++++.+|.+|.||+++|+..++.+++++|++.
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            77777777777777777777777777777777777777777654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=5.3e-29  Score=162.56  Aligned_cols=125  Identities=49%  Similarity=0.736  Sum_probs=71.9

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHc
Q 028517           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (208)
Q Consensus        45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~  124 (208)
                      |.||||.|+..|+.+++++|++.+.+   ++..+..|.|||+.|+..++.+++++|++.|.+++.++..|.||+|+|+..
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence            55566666666666666666554443   334445555556655555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCC
Q 028517          125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE  172 (208)
Q Consensus       125 ~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~  172 (208)
                      ++.+++++|+++|++++..+..|.||++.|+..|+.+++++|+++|+|
T Consensus        79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            555555555555555555555555555555555555555555555543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=2.6e-28  Score=159.27  Aligned_cols=125  Identities=43%  Similarity=0.632  Sum_probs=118.2

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 028517           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN  159 (208)
Q Consensus        80 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~  159 (208)
                      .|.|||+.|+..|+.+++++|+++|.+++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||.|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      .+++++|+++|++++.++..|.||+++|+..++.+++++|+++++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999998875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=3.3e-30  Score=179.39  Aligned_cols=160  Identities=16%  Similarity=0.154  Sum_probs=139.7

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCC-CCCchHHHHHHhcCCH----HHHHHHHhcccccccccccCCCCCc
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWA   83 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~~~~ll~~~~~~~~~~~~~~~~~~   83 (208)
                      ++.++|+.|++.|+++.++.++...    ....+ ..|.||||+|+..|+.    +++++|++.|++   ++..+..|.|
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad---vn~~d~~g~T   77 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKG----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD---IKSRTKEGTT   77 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHS----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC---SSCCCTTCCC
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcC----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC---CCCCCCCCCc
Confidence            4567899999999999999998654    23334 6799999999999985    589999999887   6778899999


Q ss_pred             HHHHHHhcCC------HHHHHHHHhCCCCCCCCCCCCc-hHHHHHHHcC-----CHHHHHHHHH-cCCCCCCCCCCCCcH
Q 028517           84 PIHSAASIGN------VTIVEMLLSKGADVNLKNDGGR-TALHYAASKG-----WLKIVELLIS-RGAKINSKDKVGCTA  150 (208)
Q Consensus        84 ~l~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~ll~-~~~~~~~~~~~~~t~  150 (208)
                      |||+|+..++      .+++++|+++|++++.+|..|. ||+|+|+..+     ..+++++|++ +|++++.+|..|.||
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp  157 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA  157 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH
Confidence            9999999887      6889999999999999999999 9999999844     3568999999 999999999999999


Q ss_pred             HHHHHhhCCHHHHHHHHHcCCCCCC
Q 028517          151 LHRGASTGNSALCELLIEEGAEVDA  175 (208)
Q Consensus       151 l~~A~~~~~~~~~~~Ll~~~~~~~~  175 (208)
                      ||+|+..|+.+++++|.++..+.+.
T Consensus       158 L~~A~~~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          158 LEFVKRCQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999976444333

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.9e-30  Score=185.53  Aligned_cols=172  Identities=24%  Similarity=0.240  Sum_probs=143.5

Q ss_pred             HHHHHHhhhh-hccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCC
Q 028517           27 KSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA  105 (208)
Q Consensus        27 ~~l~~~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  105 (208)
                      +.|++.+... .....+..+.||||.|+..|+.+++++|++.+.+   ++..+..|.||||+|+..|+.+++++|++.|+
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga   78 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND---PSQPNEEGITALHNAICGANYSIVDFLITAGA   78 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            4566655311 1223455677899999999999999999998776   57788899999999999999999999999999


Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH--HhhCCHHHHHHHHHcCCCCCCCCCCCCC
Q 028517          106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRG--ASTGNSALCELLIEEGAEVDATDKAGQT  182 (208)
Q Consensus       106 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~g~t  182 (208)
                      +++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||++|  +..|+.+++++|+++|++++..+..|.+
T Consensus        79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  158 (229)
T 2vge_A           79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY  158 (229)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence            999999999999999999999999999999999999886 5999999999  9999999999999999999999999999


Q ss_pred             HHHHHHHhCCcccccccccccc
Q 028517          183 PLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       183 ~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      |++.++....   .++|++.+.
T Consensus       159 ~l~~~~~~~~---~~~ll~~ga  177 (229)
T 2vge_A          159 ALWDYSAEFG---DELSFREGE  177 (229)
T ss_dssp             ESSCBCCSST---TBCCBCTTC
T ss_pred             HHHHHhhccc---cccCccccc
Confidence            9986554443   355565543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=5.7e-29  Score=168.64  Aligned_cols=131  Identities=26%  Similarity=0.275  Sum_probs=120.8

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHH
Q 028517           75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCT-ALHR  153 (208)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t-~l~~  153 (208)
                      ...+..+.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+ .|+.+++++|+++|++++..+..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            345678999999999999999999999999999999999999999985 89999999999999999999999999 9999


Q ss_pred             HHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       154 A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++..
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~  137 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT  137 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999987643

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=7.1e-28  Score=159.59  Aligned_cols=126  Identities=40%  Similarity=0.537  Sum_probs=117.1

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (208)
Q Consensus        42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (208)
                      ...+.||||.|+..|+.+++++|++.+.+   ++..+..|.||||.|+..++.+++++|+++|++++.++..|.||+|+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            45678999999999999999999998766   567788999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC
Q 028517          122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG  170 (208)
Q Consensus       122 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~  170 (208)
                      +..++.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=9.6e-29  Score=163.97  Aligned_cols=130  Identities=30%  Similarity=0.394  Sum_probs=114.0

Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 028517           76 AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGA  155 (208)
Q Consensus        76 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~  155 (208)
                      ..+..|.||||.|+..|+.+++++|++.|.+++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            45678899999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             hhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          156 STGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       156 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      ..|+.+++++|+++|++++.+|.+|.||+++|+..+..+++++|..+.+.
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            99999999999999999999999999999999999999999988876554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=3.8e-31  Score=202.33  Aligned_cols=189  Identities=16%  Similarity=0.136  Sum_probs=145.5

Q ss_pred             ccCcHHHHHHHHcCChHHHHHHHHHhhhh-hccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (208)
                      ..++++||.|++.|+.+++++|++.+... .....+..|.||||+|+..|+.+++++|++.+++....+..+.. .||||
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence            34569999999999999999998766311 11133456788999999999999999999988542111112222 89999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCC--CCCCCchHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNL--KNDGGRTALHYAA-SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC  163 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~  163 (208)
                      .|+..|+.+++++|+++|++++.  .+..|.||+|+|+ ..|+.+++++|+++|.       .+.||++.|+..|+.+++
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv  241 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVN  241 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHH
T ss_pred             HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHH
Confidence            99999999999999999998776  7778999999999 9999999999998763       278899999999999999


Q ss_pred             HHHHHcCCCC----------------C---------------------------------------------CCCCCCCC
Q 028517          164 ELLIEEGAEV----------------D---------------------------------------------ATDKAGQT  182 (208)
Q Consensus       164 ~~Ll~~~~~~----------------~---------------------------------------------~~~~~g~t  182 (208)
                      ++|+++|+++                +                                             .....+.+
T Consensus       242 ~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~  321 (376)
T 2aja_A          242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE  321 (376)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCH
T ss_pred             HHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccH
Confidence            9998765432                1                                             01124567


Q ss_pred             HHHHHHHhCCcccccccccccc
Q 028517          183 PLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       183 ~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      |+++|+..|+.+++++|++.++
T Consensus       322 ~L~~A~~~g~~e~v~lLl~~~~  343 (376)
T 2aja_A          322 LLRLALRLGNQGACALLLSIPS  343 (376)
T ss_dssp             HHHHHHHHTCTTHHHHHTTSHH
T ss_pred             HHHHHHHcCcHHHHHHHHcChH
Confidence            8999999999999999998653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=7.3e-31  Score=200.75  Aligned_cols=178  Identities=15%  Similarity=0.154  Sum_probs=146.2

Q ss_pred             cHHHHHHHH-cCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517           11 DKDLFKAAE-TGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (208)
Q Consensus        11 ~~~l~~a~~-~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (208)
                      ...++.|.. .++.+.+++++..+         ..+.||||.|+..|+.+++++|++.+.........+..+.||||.|+
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g---------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKG---------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHT---------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcC---------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            445666665 57888888887654         23569999999999999999999887633222334456789999999


Q ss_pred             hcCCHHHHHHHHhCCCCC---CCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCcHHHHHH-hhCCHHHH
Q 028517           90 SIGNVTIVEMLLSKGADV---NLKNDGGRTALHYAASKGWLKIVELLISRGAKINS--KDKVGCTALHRGA-STGNSALC  163 (208)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~--~~~~~~t~l~~A~-~~~~~~~~  163 (208)
                      ..|+.+++++|+++|+++   +..+.. .||+|+|+..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv  215 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI  215 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence            999999999999999752   222233 8999999999999999999999999877  7888999999999 99999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       164 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      ++|+++|+       .|.||+++|+..|+.+++++|+++++.
T Consensus       216 ~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~  250 (376)
T 2aja_A          216 NFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNR  250 (376)
T ss_dssp             HHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             HHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcc
Confidence            99999764       388999999999999999999987653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=2.2e-27  Score=154.50  Aligned_cols=117  Identities=32%  Similarity=0.392  Sum_probs=98.0

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 028517           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG  158 (208)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~  158 (208)
                      ..+.|||+.|+..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+..|
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            46678888888888888888888888888888888888888888888888888888888888888888888999888888


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccc
Q 028517          159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF  195 (208)
Q Consensus       159 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~  195 (208)
                      +.+++++|+++|++++.+|.+|.||+++|...+..++
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           85 HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            8888888888888888888888899888855444433

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.95  E-value=9.7e-27  Score=173.49  Aligned_cols=142  Identities=20%  Similarity=0.194  Sum_probs=104.7

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhcccccccc---cccCCCCCcHHHHHHhc---CCHHHHHHHHhCCCCCCCCCCCCchHH
Q 028517           45 DRTLLHVAASCGHPEVVEILLSVDESANVV---NAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTAL  118 (208)
Q Consensus        45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~---~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~l  118 (208)
                      ..++|+.|+..|+.+.++.|+..+.+....   ...+..|.||||.|+..   ++.+++++|++.|++++.+|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            446688888888888888888766653210   00466778888888876   778888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCC
Q 028517          119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN  192 (208)
Q Consensus       119 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  192 (208)
                      |+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|+++|++      .|.||||+|+..|.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence            888888888888888888888888888888888888888888888888887765      46788888887765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=2.4e-27  Score=157.22  Aligned_cols=128  Identities=33%  Similarity=0.454  Sum_probs=117.3

Q ss_pred             CCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHH
Q 028517           40 LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH  119 (208)
Q Consensus        40 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~  119 (208)
                      .++..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|+..++.+++++|+++|++++.++..|.||+|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHH
Confidence            5788999999999999999999999998776   5677889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC
Q 028517          120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG  170 (208)
Q Consensus       120 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~  170 (208)
                      +|+..++.+++++|+++|++++..+..|.||+++|+..+..+++++|.+.+
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            999999999999999999999999999999999999999999988877654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=4.2e-27  Score=163.50  Aligned_cols=140  Identities=28%  Similarity=0.328  Sum_probs=123.2

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCchHHHH
Q 028517           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHY  120 (208)
Q Consensus        42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~  120 (208)
                      +..|.||||.|+..|+.+++++|++ +.+   ++..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            3467899999999999999999998 554   67778899999999999999999999999999998888 789999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517          121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS  200 (208)
Q Consensus       121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~  200 (208)
                      |+..|+.+++++|+++|++++..|..|.|||++|+..++.                 ..+.+++++|+..|..+++++|.
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHH
Confidence            9999999999999999999999999999999999874322                 34678999999999999999987


Q ss_pred             cc
Q 028517          201 SN  202 (208)
Q Consensus       201 ~~  202 (208)
                      ++
T Consensus       180 ~~  181 (183)
T 3deo_A          180 GQ  181 (183)
T ss_dssp             TC
T ss_pred             Hh
Confidence            65

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=6.5e-27  Score=169.65  Aligned_cols=137  Identities=28%  Similarity=0.334  Sum_probs=84.9

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCchHHHHHH
Q 028517           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAA  122 (208)
Q Consensus        44 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~  122 (208)
                      .|.||||.|+..|+.+++++|++ +.+   ++..+..|.||||.|+..|+.+++++|+++|++++.++ ..|.||||+|+
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            45666666666666666666665 333   44555566666666666666666666666666666655 55666666666


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccc
Q 028517          123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSS  201 (208)
Q Consensus       123 ~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  201 (208)
                      ..|+.+++++|+++|++++..+..|.||||+|+..+.                 ...+.+|+++|+..|+.+++++|.+
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence            6666666666666666666666666666666654211                 1345666666666666666666654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.94  E-value=4.6e-27  Score=168.10  Aligned_cols=126  Identities=28%  Similarity=0.361  Sum_probs=86.8

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhh
Q 028517           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGAST  157 (208)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~A~~~  157 (208)
                      ..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ |++++..+..|.||||+|+..
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence            3456777777777777777777777777777777777777777777777777777776 777777777777777777777


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       158 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      |+.+++++|+++|++++.+|.+|.||+++|+..+..++++.|...++
T Consensus       151 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            77777777777777777777777777777777777777777766554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.94  E-value=8e-27  Score=166.84  Aligned_cols=137  Identities=27%  Similarity=0.316  Sum_probs=114.3

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhC-CCCCCCCCCCCchHHHH
Q 028517           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHY  120 (208)
Q Consensus        42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~  120 (208)
                      +..|.||||.|+..|+.+++++|++.+.+   ++..+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            55689999999999999999999998766   667788999999999999999999999998 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCC
Q 028517          121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ  181 (208)
Q Consensus       121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~  181 (208)
                      |+..|+.+++++|+++|++++..+..|.|||++|+..+..++++.|++.++.....+.+++
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            9999999999999999999999999999999999999999999999999998877765543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=1.1e-25  Score=146.46  Aligned_cols=117  Identities=32%  Similarity=0.357  Sum_probs=101.2

Q ss_pred             CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (208)
Q Consensus        42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (208)
                      +..|.||||.|+..|+.+++++|++.+.+   ++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||+|+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC---TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC---cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            45678999999999999999999987765   567788899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517          122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (208)
Q Consensus       122 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~  161 (208)
                      +..++.+++++|+++|++++..+..|.||+++|...+..+
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            9999999999999999999999999999999985443333

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1.1e-25  Score=156.26  Aligned_cols=124  Identities=31%  Similarity=0.362  Sum_probs=117.4

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHh
Q 028517           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGAS  156 (208)
Q Consensus        78 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~A~~  156 (208)
                      +..|.||||.|+..|+.++++.|++ +.+++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            3467899999999999999999999 99999999999999999999999999999999999999888 889999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      .|+.+++++|+++|++++.+|.+|.||+|+|+..++.+..+.+++.
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~  165 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF  165 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHH
Confidence            9999999999999999999999999999999999998888777654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=2.4e-25  Score=161.39  Aligned_cols=142  Identities=23%  Similarity=0.317  Sum_probs=126.7

Q ss_pred             ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccC-CCCCcHHH
Q 028517            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIH   86 (208)
Q Consensus         8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l~   86 (208)
                      ..+.++||.|++.|+.++++.|++ +  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+ ..|.||||
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~g~t~L~  116 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCSSSCCCHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCcCCCCCCCCHHH
Confidence            467899999999999999999998 3  57888899999999999999999999999998877   45555 78999999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      .|+..|+.+++++|+++|++++.++..|.||+|+|+..+                 ....+.||+++|+..|+.+++++|
T Consensus       117 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-----------------KTTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH-----------------TTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH-----------------hccCCCCHHHHHHHcChHHHHHHH
Confidence            999999999999999999999999999999999998521                 224578999999999999999999


Q ss_pred             HHcCCC
Q 028517          167 IEEGAE  172 (208)
Q Consensus       167 l~~~~~  172 (208)
                      ++++.+
T Consensus       180 ~~~~~~  185 (244)
T 3ui2_A          180 EGQVFE  185 (244)
T ss_dssp             HHHHEE
T ss_pred             HHhccc
Confidence            986443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=3.1e-25  Score=165.40  Aligned_cols=140  Identities=22%  Similarity=0.206  Sum_probs=120.3

Q ss_pred             CcHHHHHHHHcCChHHHHHHHHHhhhhhccC------CCCCCchHHHHHHhc---CCHHHHHHHHhcccccccccccCCC
Q 028517           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSL------RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEE   80 (208)
Q Consensus        10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~   80 (208)
                      ..++|+.|++.|+.+.++.|++.+  .+++.      .+..|.||||+|+..   |+.+++++|++.+.+   ++..+..
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---vn~~d~~  225 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAAD  225 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC---TTCCCTT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC---CCCCCCC
Confidence            457799999999999999999766  35554      588999999999997   899999999998876   6777889


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH
Q 028517           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS  160 (208)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~  160 (208)
                      |.||||.|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|+++|++      .|.||||+|+..|+.
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999865      478999999988763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.92  E-value=1.9e-24  Score=159.47  Aligned_cols=124  Identities=22%  Similarity=0.280  Sum_probs=115.9

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCC------CCCCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVN------LKNDGGRTALHYAASK---GWLKIVELLISRGAKINSKDKVGCTALH  152 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~------~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~  152 (208)
                      .++|+.|+..++.+.++.+++.|.+++      ..+..|.||||+|+..   ++.+++++|+++|++++..|..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            458999999999999999999998844      4477899999999999   8999999999999999999999999999


Q ss_pred             HHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          153 RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       153 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      +|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++.++-
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999987653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.1e-23  Score=130.33  Aligned_cols=92  Identities=48%  Similarity=0.754  Sum_probs=62.5

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH
Q 028517           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS  160 (208)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~  160 (208)
                      |.||||.|+..|+.+++++|++.|++++.++..|.||+|+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            56666666666666666666666666666666666777777666666666766666666666666666777777766667


Q ss_pred             HHHHHHHHcCCC
Q 028517          161 ALCELLIEEGAE  172 (208)
Q Consensus       161 ~~~~~Ll~~~~~  172 (208)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            777776666653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=8e-24  Score=161.33  Aligned_cols=145  Identities=26%  Similarity=0.288  Sum_probs=110.6

Q ss_pred             CCCchHHHHHHhc-CCHHHHHHHHhcccccccccccC--CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHH
Q 028517           43 DDDRTLLHVAASC-GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH  119 (208)
Q Consensus        43 ~~g~t~L~~A~~~-g~~~~~~~ll~~~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~  119 (208)
                      ..+.|+||.|+.. |+.+++++|++.+.+   ++..+  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad---vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGAD---VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCC---TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCC---CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            3456799999998 999999999988876   44445  78899999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHh
Q 028517          120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG---AEVDATDKAGQTPLMNAVIC  190 (208)
Q Consensus       120 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~---~~~~~~~~~g~t~l~~A~~~  190 (208)
                      +|+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|+..+   .+....+..+.|+++++...
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998764   33345556677777776554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=4.8e-24  Score=162.57  Aligned_cols=124  Identities=28%  Similarity=0.368  Sum_probs=118.9

Q ss_pred             CCCcHHHHHHhc-CCHHHHHHHHhCCCCCCCCC--CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 028517           80 EGWAPIHSAASI-GNVTIVEMLLSKGADVNLKN--DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS  156 (208)
Q Consensus        80 ~~~~~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~  156 (208)
                      .+.|+||.|+.. ++.++++.|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            445799999999 99999999999999999988  789999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517          157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK  203 (208)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  203 (208)
                      .|+.+++++|+++|++++..|.+|.||||+|+..++.+++++|++.+
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999998754

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=4.8e-24  Score=131.87  Aligned_cols=92  Identities=42%  Similarity=0.583  Sum_probs=88.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCC
Q 028517          113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN  192 (208)
Q Consensus       113 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~  192 (208)
                      +|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||+|+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccc
Q 028517          193 KEFSGCSSSNKT  204 (208)
Q Consensus       193 ~~~~~~l~~~~~  204 (208)
                      .+++++|+++++
T Consensus        81 ~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 LEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=6.3e-23  Score=151.31  Aligned_cols=127  Identities=19%  Similarity=0.166  Sum_probs=117.2

Q ss_pred             hHHHHHHhcCCHHHHHHHHhccccccc---ccccCCCCCcHHHHHHhc---CCHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 028517           47 TLLHVAASCGHPEVVEILLSVDESANV---VNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (208)
Q Consensus        47 t~L~~A~~~g~~~~~~~ll~~~~~~~~---~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  120 (208)
                      ++|+.|+..|+.+.++.++..+.+...   ++..+..|.||||.|+..   ++.+++++|+++|++++.+|..|.||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            589999999999999999988776421   344577899999999999   89999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCC
Q 028517          121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV  173 (208)
Q Consensus       121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~  173 (208)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       212 A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999998754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=4.7e-24  Score=137.05  Aligned_cols=108  Identities=38%  Similarity=0.574  Sum_probs=81.1

Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 028517           77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS  156 (208)
Q Consensus        77 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~  156 (208)
                      ++..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            45677777777777777777777777777777777777777777777777777777777777777777777778888877


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 028517          157 TGNSALCELLIEEGAEVDATDKAGQTPL  184 (208)
Q Consensus       157 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l  184 (208)
                      .++.+++++|+++|++++..+..|.+|-
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            7777888888777777777777776653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=6.1e-23  Score=131.82  Aligned_cols=109  Identities=40%  Similarity=0.546  Sum_probs=99.5

Q ss_pred             CCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHH
Q 028517           40 LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH  119 (208)
Q Consensus        40 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~  119 (208)
                      ++|..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||.|+..++.+++++|+++|++++.++..|.||++
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC---SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            5688999999999999999999999988766   5677889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 028517          120 YAASKGWLKIVELLISRGAKINSKDKVGCTAL  151 (208)
Q Consensus       120 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l  151 (208)
                      +|+..++.+++++|+++|++++..+..+.+|-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999998888874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=7.3e-21  Score=121.13  Aligned_cols=89  Identities=33%  Similarity=0.410  Sum_probs=49.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Q 028517          111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC  190 (208)
Q Consensus       111 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~  190 (208)
                      +..|.|+||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCccccccc
Q 028517          191 YNKEFSGCS  199 (208)
Q Consensus       191 ~~~~~~~~l  199 (208)
                      |+.+++++|
T Consensus       101 ~~~~~~~~L  109 (110)
T 2zgd_A          101 GNEDLAEIL  109 (110)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            555555544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=5.3e-20  Score=117.13  Aligned_cols=93  Identities=35%  Similarity=0.526  Sum_probs=79.1

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 028517           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHR  153 (208)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~  153 (208)
                      ....+..|.|+||.|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.|||++
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            44556778889999999999999999999988888888889999999999999999999999999988888889999999


Q ss_pred             HHhhCCHHHHHHH
Q 028517          154 GASTGNSALCELL  166 (208)
Q Consensus       154 A~~~~~~~~~~~L  166 (208)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-33
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-32
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-30
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-32
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-27
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-23
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-22
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-26
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-23
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-17
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-13
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-12
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-13
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	8e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 2e-33
 Identities = 54/181 (29%), Positives = 72/181 (39%), Gaps = 36/181 (19%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LHVA+  GH  +V+ LL     A+  N  + +   P+H AA  G+  + + LL   A 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ--RGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISR------------------------------ 136
           VN K    +T LH AA  G   +V+LL+                                
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 137 ---GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
               A      K G T LH  A  G   + ELL+E  A  +A  K G TPL  AV   N 
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 178

Query: 194 E 194
           +
Sbjct: 179 D 179

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 3e-32
 Identities = 60/218 (27%), Positives = 85/218 (38%), Gaps = 38/218 (17%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  A+  G     K+L ++    S ++ N    T LH+AA  GH EV + LL     A V
Sbjct: 4   LHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLL--QNKAKV 59

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSK------------------------------ 103
            NA  ++   P+H AA IG+  +V++LL                                
Sbjct: 60  -NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 104 ---GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
               A        G T LH AA  G +++ ELL+ R A  N+  K G T LH      N 
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 178

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGC 198
            + +LL+  G    +    G TPL  A      E +  
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 216

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 5e-30
 Identities = 58/223 (26%), Positives = 87/223 (39%), Gaps = 36/223 (16%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
              + +      L  AA  G +   K L + +    ++ +  DD+T LH AA  GH  +V
Sbjct: 25  SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA--KVNAKAKDDQTPLHCAARIGHTNMV 82

Query: 62  EILLS------------------------------VDESANVVNAVDEEGWAPIHSAASI 91
           ++LL                               + E       + ++G+ P+H AA  
Sbjct: 83  KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 142

Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
           G V + E+LL + A  N     G T LH A     L IV+LL+ RG   +S    G T L
Sbjct: 143 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL 202

Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           H  A      +   L++ G   +A    G TPL  A    + E
Sbjct: 203 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 245

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 2e-29
 Identities = 41/125 (32%), Positives = 63/125 (50%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           P+H A+ +G++ IV+ LL +GA  N+ N    T LH AA  G  ++ + L+   AK+N+K
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK 203
            K   T LH  A  G++ + +LL+E  A  +    AG TPL  A    + E        +
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 204 TWSGC 208
               C
Sbjct: 123 ASQAC 127

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 7e-29
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +    T LH+AA  GH E+V +   +       N  ++ G  P+H  A  G+V + ++L+
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVAL---LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
             G  V+     G T LH A+  G +K+V+ L+   A +N+K K+G + LH+ A  G++ 
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           +  LL++ GA  +     G TPL  A       
Sbjct: 345 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 377

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 4e-26
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVAA  G   V E+LL  D      NA  + G  P+H A    N+ IV++L
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L +G   +     G T LH AA +  +++   L+  G   N++   G T LH  A  G++
Sbjct: 185 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 244

Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            +  LL+ + A  +  +K+G TPL       +  
Sbjct: 245 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 278

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 3e-25
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 8/168 (4%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  AA+ G +     L  +Q   + +L N    T LH+ A  GH  V ++L+       V
Sbjct: 235 LHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK--HGVMV 290

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
            +A    G+ P+H A+  GN+ +V+ LL   ADVN K   G + LH AA +G   IV LL
Sbjct: 291 -DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 349

Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELL---IEEGAEVDATDK 178
           +  GA  N     G T L      G  ++ ++L    +E + V  +DK
Sbjct: 350 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 397

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 5e-24
 Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  AA+ G     + L ++      +    +  T LHVA    + ++V++LL    S   
Sbjct: 136 LHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS--- 190

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
            ++    G+ P+H AA    V +   LL  G   N ++  G T LH AA +G  ++V LL
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 250

Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
           +S+ A  N  +K G T LH  A  G+  + ++LI+ G  VDAT + G TPL  A    N 
Sbjct: 251 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 310

Query: 194 EF 195
           + 
Sbjct: 311 KL 312

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 3e-23
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
           T LH A+  G L IV+ L+ RGA  N  +    T LH  A  G++ + + L++  A+V+A
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 176 TDKAGQTPLMNAVICYNKEF 195
             K  QTPL  A    +   
Sbjct: 62  KAKDDQTPLHCAARIGHTNM 81

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 3e-23
 Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 9/198 (4%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           ++ D       K+    L  A    +    K L  +    S      +  T LH+AA   
Sbjct: 152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSPHSPAWNGYTPLHIAAKQN 209

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
             EV   LL         NA   +G  P+H AA  G+  +V +LLSK A+ NL N  G T
Sbjct: 210 QVEVARSLLQYG---GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 176
            LH  A +G + + ++LI  G  +++  ++G T LH  +  GN  L + L++  A+V+A 
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 177 DKAGQTPLMNAVICYNKE 194
            K G +PL  A    + +
Sbjct: 327 TKLGYSPLHQAAQQGHTD 344

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 5e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           +    D   K K     L +AA+ G +     L K     S +  + D  T L +A   G
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA--SPNEVSSDGTTPLAIAKRLG 374

Query: 57  HPEVVEILLSVDESANVVNAVDEEG 81
           +  V ++L  V +  + V   D+  
Sbjct: 375 YISVTDVLKVVTDETSFVLVSDKHR 399

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 6e-32
 Identities = 49/141 (34%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG----WAPIHSAASIGNVTIV 97
                T L  AA  GH EV++ILL  DE    VNA D  G       + S+       I 
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGAS 156
            +LL  GADVN++ + G+T L  A  K  L +V+ L+ +   +IN  D  G TAL     
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 157 TGNSALCELLIEEGAEVDATD 177
                + ELL + GA  D  D
Sbjct: 263 LKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 4e-24
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 13/166 (7%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLS-------VDESANVVNAVDEEGWAPIHSAASIGNV 94
           +    T    AA  G  + ++ L           ++      + + G   +  AA  G+V
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 95  TIVEMLLSK-GADVNLKNDGGRTALH----YAASKGWLKIVELLISRGAKINSKDKVGCT 149
            ++++LL + GADVN  ++ GR AL      +       I  LL+  GA +N + + G T
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221

Query: 150 ALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKE 194
            L       +  L + L+E E  E++ TD  G+T L+ AV    K+
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 7e-20
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 48/227 (21%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD-RTLLHVAASCGHPEVVEILLSV----- 67
           L KA +  D    + L +     +++ + ++   T LH A      ++VE+LL       
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGA--NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 68  -------------------------DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
                                          VN  D  G+     AA  G V  ++ L  
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 103 KGADVNLKN----------DGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTAL 151
           +GA+VNL+            GG TAL  AA KG ++++++L+   GA +N+ D +G  AL
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 152 HRGASTGNS----ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                + +     A+  LL++ GA+V+   + G+TPL+ AV   +  
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 2e-16
 Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 46/196 (23%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL-- 101
           +D  LL  A      ++V+ LL  +  ANV    +E GW P+H+A  +    IVE+LL  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLL--EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 102 -------------------------------SKGADVNLKNDGGRTALHYAASKGWLKIV 130
                                          SKGADVN  +  G TA   AA  G +K +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 131 ELLISRGAKINSKD----------KVGCTALHRGASTGNSALCELLIEE-GAEVDATDKA 179
           + L  RGA +N +           K G TAL   A  G+  + ++L++E GA+V+A D  
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 180 GQTPLMNAVICYNKEF 195
           G+  L++A++  +   
Sbjct: 182 GRNALIHALLSSDDSD 197

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 8e-16
 Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 1/130 (0%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGA 138
           E    +  A    +V +V+ LL  GA+VN +  +GG T LH A       IVELL+  GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGC 198
               + K G T     A  G+  L +L + +GA+V+  D  G T  M A +    +    
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 199 SSSNKTWSGC 208
                     
Sbjct: 124 LYKRGANVNL 133

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 3e-27
 Identities = 61/204 (29%), Positives = 86/204 (42%), Gaps = 31/204 (15%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           +   A +G     K           +  + D RT LH A S GH E+VE LL +    N 
Sbjct: 7   VCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 74  ------------------------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
                                         VNAV++ G  P+H AAS     I  MLL  
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
           GA+ + K+    TA+H AA+KG LK++ +L+   A  N +D  G T LH           
Sbjct: 126 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA 185

Query: 164 ELLIEEGAEVDATDKAGQTPLMNA 187
           +LL+ +GA +   +K  +TPL  A
Sbjct: 186 KLLVSQGASIYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 9e-23
 Identities = 51/183 (27%), Positives = 74/183 (40%), Gaps = 35/183 (19%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT--------- 95
              ++   A  G  E ++  +  D+S  +    D++    +H A S G+           
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60

Query: 96  ------------------------IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
                                   IV+ LL KGA VN  N  G T LHYAASK   +I  
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY 191
           +L+  GA  ++KD    TA+HR A+ GN  +  +L+   A  +  D  G TPL  A    
Sbjct: 121 MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 180

Query: 192 NKE 194
             E
Sbjct: 181 RVE 183

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 4e-22
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N +  T LH AAS    E+  +LL     AN  +A D      +H AA+ GN+ ++ +L
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVMLLE--GGANP-DAKDHYEATAMHRAAAKGNLKMIHIL 155

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
           L   A  N+++  G T LH A  +  ++  +LL+S+GA I  ++K   T L   A  G  
Sbjct: 156 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV-AKGGLG 214

Query: 161 ALCELLIE 168
            + + ++E
Sbjct: 215 LILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 151 LHRGASTGN-SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC 208
           +   A +G    L E ++ + +    TD+  +T L  A    + E              
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  102 bits (254), Expect = 1e-26
 Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 5/164 (3%)

Query: 31  KQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS 90
            +QL      +      +  VAA  G    ++ L  +  S  +V  +  E +     AA 
Sbjct: 76  AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 135

Query: 91  IGNVTIVEMLLSKGADVNLKN--DGGRTALHYAASKGWLKIVELLISRGAKINS---KDK 145
            G++ ++  L        +         A   AA  G L ++  L        +   + +
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195

Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
                       G+  +   L++    +   +          V 
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN 239

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.1 bits (199), Expect = 6e-19
 Identities = 20/173 (11%), Positives = 43/173 (24%), Gaps = 18/173 (10%)

Query: 39  SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           ++ N ++   L +        + +  +S   +   +  +  +    I    +     + +
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFIS--ANELSLMTLSYKEAIHIFLPGTKNMEQVRQ 63

Query: 99  MLLSKGADVNL-----------KNDGGRTALHYAASKG---WLKIVELLISRGAKINSKD 144
           +L    A  N            K          AA  G    L  + LL++    +    
Sbjct: 64  LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ 123

Query: 145 KVGCTALHRGASTGNSALCELLIEEGAEVDATDKA--GQTPLMNAVICYNKEF 195
                A    A  G+  +   L E                    A    +   
Sbjct: 124 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 176

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 76.9 bits (188), Expect = 2e-17
 Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 20/201 (9%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKS---LSLRNDDDRTLLHVAASCGHPEVVEILLSVDES 70
            F AA TG SS   +L    LL S   + +   ++     +AA  GH  V+  L  +  +
Sbjct: 94  CFVAAITGCSSALDTL--CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN---LKNDGGRTALHYAASKGWL 127
             +   +  E +     AA  G++ ++  L           ++ +        A  +G  
Sbjct: 152 EIMAM-IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

Query: 128 KIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
            ++  L+     +         A       G   +   +           K        +
Sbjct: 211 NVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFIARHVNR----LKEMHDAFKLS 259

Query: 188 VICYNKEFSGCSSSNKTWSGC 208
                 +    S   + +   
Sbjct: 260 NPDGVFDLVTKSECLQGFYML 280

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 65.7 bits (159), Expect = 2e-13
 Identities = 27/202 (13%), Positives = 51/202 (25%), Gaps = 21/202 (10%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
              AAE G       L +    + +++   ++     +AA  GH  V+  L  +  +   
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE-- 131
                E  +A   +A   G+  ++  LL     +               +    + V   
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 249

Query: 132 -------LLISRGAKINSKDKVGC-------TALHRGASTGNSALCELLIEEGA-----E 172
                   L +     +   K  C         L R            L+          
Sbjct: 250 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 309

Query: 173 VDATDKAGQTPLMNAVICYNKE 194
                      L  A+   N+ 
Sbjct: 310 TATIPGDANELLRLALRLGNQG 331

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 65.7 bits (159), Expect = 2e-13
 Identities = 13/100 (13%), Positives = 22/100 (22%), Gaps = 14/100 (14%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  +      ++   G  ++V                       +        +  +  L
Sbjct: 248 RLKEMHDAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFL 298

Query: 101 LSKGADVNLKNDG-----GRTALHYAASKGWLKIVELLIS 135
           LS      L             L  A   G      LL+S
Sbjct: 299 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 62.6 bits (151), Expect = 2e-12
 Identities = 17/138 (12%), Positives = 27/138 (19%), Gaps = 18/138 (13%)

Query: 36  KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT 95
             L                 G   V   +              +E       +   G   
Sbjct: 214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIA-------RHVNRLKEMHDAFKLSNPDGVFD 266

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA-----KINSKDKVGCTA 150
           +V           L+       L     +  L  +  L+S           +        
Sbjct: 267 LVT------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 320

Query: 151 LHRGASTGNSALCELLIE 168
           L      GN   C LL+ 
Sbjct: 321 LRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRND---DDRTLLHVAASCGHPEVVEILLSVDE 69
           L +  +       + L     +K+L+       D   LL +A   G+     +LLS+  
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 341

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.0 bits (227), Expect = 4e-23
 Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 50/196 (25%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLS----------------------------------VD 68
           +   T LH   S  + E+V+ L+                                   +D
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVT------------IVEMLLSKGA-DVNLKNDGGR 115
                +   D      +H       +T            ++  ++ K    +    +   
Sbjct: 165 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 116 TALHYAASKGWLKIVELLISR---GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
           +  +    +    I+E L  +      +N++D  G T L+  A  GN ++ + L++ GA+
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 284

Query: 173 VDATDKAGQTPLMNAV 188
               +K+G  P+    
Sbjct: 285 PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.3 bits (207), Expect = 3e-20
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           +    ++  +  +         ++E L      AN++NA D  G   ++ AA +GN++IV
Sbjct: 216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 275

Query: 98  EMLLSKGADVNLKNDGGRTALHYAA 122
           + LL  GAD  + N  G   + + A
Sbjct: 276 DALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.6 bits (205), Expect = 5e-20
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEV----------VEILLSVDESANVVNAVDEEGWA 83
           L   L L +  +RT+LH                    + +   V +    + +   E  +
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 84  PIHSAASIGNVTIVEMLLSK---GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
             +        +I+E L  K      +N ++  G T L+ AA  G + IV+ L+  GA  
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 285

Query: 141 NSKDKVGCTALHRGA 155
              +K G   +  GA
Sbjct: 286 FIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.7 bits (169), Expect = 6e-15
 Identities = 37/244 (15%), Positives = 71/244 (29%), Gaps = 55/244 (22%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D +Q +K +   +     +     +          S     ++   HV+      EV + 
Sbjct: 32  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN--------------- 108
             +     N+   VDE G  P+H   SI N+ +V+ L+  G++                 
Sbjct: 92  FPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 149

Query: 109 ----------------------LKNDGGRTALHYAASKG-------------WLKIVELL 133
                                 L++   RT LH+                   + +  ++
Sbjct: 150 SVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 209

Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE---GAEVDATDKAGQTPLMNAVIC 190
             +   I S      +  +        ++ E L  +      ++A D  G T L  A   
Sbjct: 210 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 269

Query: 191 YNKE 194
            N  
Sbjct: 270 GNIS 273

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 2/104 (1%)

Query: 93  NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 152
            + I++ L S   + N +       L         ++   L +  +  NS+         
Sbjct: 18  PLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ 77

Query: 153 RGASTGNSA-LCELLIEEGAEVDA-TDKAGQTPLMNAVICYNKE 194
             +       + +        ++   D+ G TPL       N E
Sbjct: 78  HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 121

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.9 bits (211), Expect = 4e-21
 Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 14/181 (7%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + VE L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN--------------SKDKVG 147
           + GA V +   GG TALH A          +L+                     + D   
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSG 207
             A         +       +   +++A +  G TPL  AVI  + E             
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 208 C 208
            
Sbjct: 186 K 186

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 5e-16
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
             P+H A      +++E+LL  GAD   +  GGRT L  A  +    +  LL + GA   
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 2e-15
 Identities = 40/238 (16%), Positives = 69/238 (28%), Gaps = 56/238 (23%)

Query: 10  KDKD----LFKAAETGDSSTFKSL-SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
             +D    L  A           L       + L L+ND  +T LH+AA  G    VE  
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK- 63

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL--------------K 110
             +  +   V   +  G   +H A  +   T   +LL                       
Sbjct: 64  --LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGC---------------------- 148
           +     A   +      +          ++ +++  G                       
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 149 ------------TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
                       T LH       +++ ELL++ GA+  A    G+TPL +A++  N  
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI 239

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 5e-04
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLS 66
            + R    RT L  A    +P +  +L +
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 82.1 bits (201), Expect = 2e-19
 Identities = 26/96 (27%), Positives = 44/96 (45%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
                + G   +H AA+ G   ++++L+    DVN+K+  G T LH AA  G  +   +L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE 169
           +     + + +KVG TA           L EL  ++
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 80.5 bits (197), Expect = 7e-19
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVAA+ G+ EV+++L+        VN  D +GW P+H+AA  G      +L
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           +    D+   N  G+TA   A       I+  L     K N
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADE----DILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 76.7 bits (187), Expect = 2e-17
 Identities = 35/113 (30%), Positives = 51/113 (45%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           N    +  A       I      + L S   +       G TALH AA+KG+ ++++LLI
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
                +N KD  G T LH  A  G    C +L+E   +++A +K GQT    A
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.6 bits (153), Expect = 8e-13
 Identities = 45/122 (36%), Positives = 58/122 (47%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
           V  +  A   +A S G+   V  LL +GAD+N  N  G TALH A     + +V+ L+  
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 137 GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFS 196
           GA IN  D  G   LH  AS G   + E LI +GA V A +  G TPL  A     +E  
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

Query: 197 GC 198
             
Sbjct: 156 QN 157

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.7 bits (148), Expect = 4e-12
 Identities = 49/213 (23%), Positives = 68/213 (31%), Gaps = 63/213 (29%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV---- 97
             DD  +   A S G  E V  LL     A++ N  + +G   +H A    NV +V    
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLE--RGADI-NYANVDGLTALHQACIDDNVDMVKFLV 93

Query: 98  -----------------------------EMLLSKGADVNLKNDGGRTALHYAASKG--- 125
                                        E L+S+GA V   N  G T L  A  +    
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

Query: 126 ------------------------WLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
                                        + L S         K G TALH  A+ G + 
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213

Query: 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
           + +LLI+   +V+  D  G TPL  A     +E
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 5e-07
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC 208
                  S+G++     L+E GA+++  +  G T L  A I  N +       N      
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.5 bits (197), Expect = 5e-19
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                RT LH AA   +  +V+    V E  +  +  DE+G  PI  AA  G + +V  L
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKY--LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           + +GA V   +    TA   A +     IV++  
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 78.2 bits (191), Expect = 3e-18
 Identities = 23/96 (23%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVEL 132
            ++   +G   +H AA + N+ IV+ L+  KG++ + +++ G+T +  AA +G +++V  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
           LI +GA + + D    TA     +  +  + ++   
Sbjct: 240 LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.9 bits (172), Expect = 2e-15
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 12/152 (7%)

Query: 55  CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-----------IVEMLLSK 103
                ++  +L+  +    +  +D  G   +   A                   ++    
Sbjct: 117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGCTALHRGASTGNSAL 162
            A  + +   GRTALHYAA    + IV+ L+  +G+  + +D+ G T +   A  G   +
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
              LI++GA V+A D    T    A    +  
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQANNHHN 268

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 69.8 bits (169), Expect = 4e-15
 Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 27/129 (20%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           E    +H+ A+ G+  I E +  +  ++       RT LH+ AS    +  E LI   AK
Sbjct: 1   ESPIKLHTEAA-GSYAITEPITRESVNIIDPRHN-RTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCS 199
                                      I  GA+V+A D    TPLM AV+   +      
Sbjct: 59  -------------------------ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 93

Query: 200 SSNKTWSGC 208
                    
Sbjct: 94  MKAGADPTI 102

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.4 bits (124), Expect = 6e-09
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 28/129 (21%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              +RT+LH  AS    E  E L+                                +  +
Sbjct: 30  PRHNRTVLHWIASNSSAEKSEDLIV----------------------------HEAKECI 61

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
           + GADVN  +    T L  A      ++V  L+  GA     +K   +ALH+ A+  +  
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG 121

Query: 162 LCELLIEEG 170
           +   ++   
Sbjct: 122 MMVYMLNST 130

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
           +  AA+ G       L +Q    S+   +  D T   +A +  H  +V+I  
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 74.4 bits (181), Expect = 4e-17
 Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 31/185 (16%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEIL-------------------------------LSVDE 69
            +    T LH+AA     +  + L                               + +  
Sbjct: 19  MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN 78

Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
            A  +NA   +G  P+  AA +    +VE L++  AD+N  ++ G+TALH+AA+    + 
Sbjct: 79  RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEA 138

Query: 130 VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
           V +L+   A  +++D    T L   A  G+    + L++  A  + TD   + P   A  
Sbjct: 139 VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASE 198

Query: 190 CYNKE 194
             + +
Sbjct: 199 RLHHD 203

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 67.5 bits (163), Expect = 1e-14
 Identities = 23/93 (24%), Positives = 40/93 (43%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +NA D  G   +H AA++ N   V +LL   A+ + ++D   T L  AA +G  +  + L
Sbjct: 116 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 175

Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
           +   A     D +        +   +  +  LL
Sbjct: 176 LDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.2 bits (131), Expect = 4e-10
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 96  IVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVELL 133
           ++  LL++GA++N   D  G T+LH AA        + L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.0 bits (115), Expect = 6e-08
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117
            +V+  LL+  + A +   +D+ G   +H AA        + LL  GAD N +++ GRT 
Sbjct: 2   AQVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTP 59

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGC-TALHRGASTGNSALCELLIEEGAEVDAT 176
           LH A +   + + ++L+   A   +       T L   A      + E LI   A+++A 
Sbjct: 60  LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 119

Query: 177 DKAGQTPLMNAVIC 190
           D +G+T L  A   
Sbjct: 120 DNSGKTALHWAAAV 133

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.2 bits (113), Expect = 9e-08
 Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 36/93 (38%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++D D T L +AA  G  E                                      + L
Sbjct: 152 QDDKDETPLFLAAREGSYEA------------------------------------SKAL 175

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           L   A+  + +   R     A+ +    IV LL
Sbjct: 176 LDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 7e-04
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 37  SLSLRNDDDRTLLHVAASCGHPEVVEIL 64
           +  + +  DR    VA+   H ++V +L
Sbjct: 181 NREITDHMDRLPRDVASERLHHDIVRLL 208

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 2e-14
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           L  A       +V++L    +    VNA    G + +HSA+  G + +V  L+  GAD +
Sbjct: 148 LIHAVENNSLSMVQLL---LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 109 LKNDGGRTALHYAASKGWLKIV 130
           LKN    T L  A S+  + I+
Sbjct: 205 LKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 1e-12
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  T LHVA +    E V++LL  +  A++     + G +P+  A    ++++V++LL
Sbjct: 107 NYDGLTALHVAVNTECQETVQLLL--ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 164

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
             GA+VN +   G +ALH A+ +G L +V  L+  GA  + K+    T L    S   
Sbjct: 165 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 4e-11
 Identities = 47/218 (21%), Positives = 77/218 (35%), Gaps = 37/218 (16%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAAS----------------- 54
           L  A   G+      L          L + N+  +T LH+A                   
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 55  ----------------CGHPEVVEILL-SVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
                              P  +  LL S       + A + +G   +H A +      V
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126

Query: 98  EMLLSKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
           ++LL +GAD++  +       L +A     L +V+LL+  GA +N++   G +ALH  + 
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 186

Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
            G   L   L+  GA+    +    TPLM A      +
Sbjct: 187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 224

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 9e-11
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 79  EEGWAPIHSAASIGNVTIVEMLLS----KGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           E+G  P+H A   GN+  V  L++     G ++++ N+  +T LH A       +V LL+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
           + GA   + D+ G TA H      +      L++  A
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 97

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 2e-09
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 6/172 (3%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +D  T LH+A   G+   V  L+++ +     ++  +     P+H A      ++V +L+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV----GCTALHRGAST 157
           + GA     +  G+TA H A        +  L+   A      +     G TALH   +T
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 158 GNSALCELLIEEGAEVDATDKAG-QTPLMNAVICYNKEFSGCSSSNKTWSGC 208
                 +LL+E GA++DA D    ++PL++AV   +         +      
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 172

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 2e-14
 Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++  ++  LH AAS G  +++E+        + VN  D++GW P+  A + G+     +L
Sbjct: 134 KDKFNQIPLHRAASVGSLKLIEL--LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 191

Query: 101 LSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           + K GA+ +L ++ G  A   A ++   ++ +  ++   
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 3e-12
 Identities = 51/216 (23%), Positives = 78/216 (36%), Gaps = 46/216 (21%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKS----LSLRNDDDRTLLHVAASCGHPEVV-------- 61
           L +A    +    +     +LL S    L  ++ D R  LH + S    E+         
Sbjct: 4   LHQACMENEFFKVQ-----ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 58

Query: 62  ---------------------------EILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
                                         L        +N +  +G   +H A      
Sbjct: 59  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHR 153
            + + L+  GA V +K+   +  LH AAS G LK++ELL   G   +N +DK G T L  
Sbjct: 119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 154 GASTGNSALCELLIEE-GAEVDATDKAGQTPLMNAV 188
             + G+     LL+E+ GAE D  D  G      A+
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 6e-11
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 84  PIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           P+H A        V+ LL SK + +  K+  GR  LH++ S    +I   L+S+ 
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 3e-10
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 116 TALHYAASKGWLKIV-ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
             LH A  +     V ELL S+ + +  KD+ G   LH   S     +   L+ + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 9e-08
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++    T L  A + GH +   +L+     A   + VD +G      A    N  + +  
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVE-KYGAEY-DLVDNKGAKAEDVAL---NEQVKKFF 222

Query: 101 LSKGAD 106
           L+   D
Sbjct: 223 LNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 3e-07
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 149 TALHRGASTGN-SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSG 207
             LH+         + ELL  + + +   D+ G+ PL  +V     E +    S      
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 208 C 208
            
Sbjct: 62  L 62

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.1 bits (152), Expect = 2e-13
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 80  EGWAPIHS---AASIGNVTIVEMLLSKGADVNLK------NDGGRTALHYAA---SKGWL 127
           +  A +HS   A    ++  +    + G D+  K      ++   TALH A     +  L
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 128 KIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
            IV+ L+     ++ +   G TALH    T N+   +LL+   A ++  +++G+TPL  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 188 VICYNKE 194
               ++ 
Sbjct: 122 KRLKHEH 128

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 1e-12
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 5/146 (3%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQ----QLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           D   K   L +A +T D                   L+  ++ D T LH+A        +
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
            I+  + +++  ++    +G   +H      N   +++LL   A + + N+ G T L  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 122 ASKGWLKIVELLISRGA-KINSKDKV 146
                    ELL    + + NS   V
Sbjct: 122 KRLKHEHCEELLTQALSGRFNSHVHV 147

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (142), Expect = 5e-12
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 44  DDRTLLHVAASCGH-PEVVEILLSVDESANV-----VNAVDEEGWAPIHSAA---SIGNV 94
           D    LH         ++  +L +  +  ++     +    E     +H A       ++
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRG 154
            IV+ L+    +++ +   G TALHY       + ++LL+   A I   ++ G T L   
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 155 ASTGNSALCELLIEEGA 171
               +    ELL +  +
Sbjct: 122 KRLKHEHCEELLTQALS 138

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 4e-13
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 33/127 (25%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-------------------------- 80
            LL  ++  G  ++V+ ++   +  ++ N                               
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 81  ----GWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTA--LHYAASKGWLKIVELL 133
               GW P+H AAS  NV + + L+  GA V        +TA        +G+ +  + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 134 ISRGAKI 140
                K+
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 1/111 (0%)

Query: 83  APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
           A +  ++  G   +V+ ++ +  D +L ND G TALH A   G  +IV+ L+  G  +N+
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 143 KDKVGCTALHRGASTGNSALCELLIEEGAEVDA-TDKAGQTPLMNAVICYN 192
            D  G T LH  AS  N  +C+ L+E GA V A T    QT          
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 113

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (153), Expect = 4e-13
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N +  T LH+A+  G+  +VE  L V   A+V       G   +H A  + N  +V +LL
Sbjct: 108 NYNGHTCLHLASIHGYLGIVE--LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 165

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN     G +       +   +I + L     +      
Sbjct: 166 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 1e-09
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 82  WAPIHSAASIGNVTIVEMLLSKGADV-NLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
              +H A+  G + IVE+L+S GADV   +   GRTALH A       +V LL+  GA +
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 171

Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
           N     G +         ++ + + L +   E
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 2e-09
 Identities = 45/192 (23%), Positives = 69/192 (35%), Gaps = 41/192 (21%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
           D  + LH+A       +   ++   +     +N  +     P+H A       I E LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 103 KGADVNLKNDGG---------------------------------------RTALHYAAS 123
            G D  L++  G                                        T LH A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 124 KGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQT 182
            G+L IVELL+S GA +N+++   G TALH      N  L  LL++ GA+V+     G +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 183 PLMNAVICYNKE 194
           P        +  
Sbjct: 181 PYQLTWGRPSTR 192

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 4/45 (8%), Positives = 13/45 (28%), Gaps = 2/45 (4%)

Query: 39  SLRNDDDRTLLHVAASCGHPEVVEILLS--VDESANVVNAVDEEG 81
           +       +   +        + + L    ++    +  + DEE 
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 216

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (131), Expect = 2e-10
 Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 29/152 (19%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNA--------------------------- 76
           D    L  AA  G  + V IL++                                     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 77  --VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
               +    P+H AAS G+  IVE+LL  GADVN K+    TALH+A      ++VELLI
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELL 166
             GA ++++ K   TA       GN  L E+L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (121), Expect = 4e-09
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 32/143 (22%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDG------------------------------ 113
            +  AA  G    V +L++ GA       G                              
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 114 --GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
              RT LH AAS+G   IVE+L+  GA +N+KD +  TALH      +  + ELLI+ GA
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

Query: 172 EVDATDKAGQTPLMNAVICYNKE 194
           +V    K  +T    ++   N++
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNED 147

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 5e-04
 Identities = 5/27 (18%), Positives = 14/27 (51%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEIL 64
           +  ++   +T   ++   G+ ++ EIL
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 6e-09
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           VN  D  G  PIH A   G+  +V  L    +D++ ++  G T L  A  +G   +V++L
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 134 IS 135
             
Sbjct: 153 QG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 8e-09
 Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 4/146 (2%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           L  AA+ G  + V  LL         +A++  G   +           +E+L  +GA  N
Sbjct: 6   LSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFGSTAIALELL-KQGASPN 62

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
           +++  G + +H AA  G+L  +++L+  GA +N  D  G   +H     G++A+    + 
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-LA 121

Query: 169 EGAEVDATDKAGQTPLMNAVICYNKE 194
             +++   D  G TPL  A+    ++
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQD 147

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLS 66
           L  R+    T L +A   G  ++V+IL  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 114 GRTALHYAASKGWLKIV-ELLISRGAKINSKDKVGCT 149
               L  AA++G ++ V  LL       ++ ++ G T
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKT 38

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 6e-08
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGC 148
             L  AA++G L+ +  L+     +N+++  G 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-07
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           V  +N  G TA   A   G  ++V L+ + G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-06
 Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 3/146 (2%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           L  AA+ G  E +  LL    + N VNA +  G   +             +LL       
Sbjct: 5   LASAAARGDLEQLTSLL--QNNVN-VNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
               G       A +     +  LL  +       ++                +  L+  
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 169 EGAEVDATDKAGQTPLMNAVICYNKE 194
             + V   +  G T    A +    E
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNE 147

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-06
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
            + SAA+ G++  +  LL    +VN +N  GRTAL  
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 40

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-05
 Identities = 9/60 (15%), Positives = 18/60 (30%)

Query: 149 TALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC 208
             L   A+ G+      L++    V+A +  G+T L    +   +               
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 8e-05
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
           V   + +G      A   G   +V ++ + G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 1e-04
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLS 66
            RN    T   +A   G  EVV ++ +
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 6e-08
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 30/123 (24%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV----------------------------- 73
           +     L  AA+ G  E V  LL    + N                              
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 74  -VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
              A       P+H AA  G +  + +L   GA +++++  GR  +  A   G   +   
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 133 LIS 135
           L +
Sbjct: 121 LRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 1e-04
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKIN 141
           +     L  AA++G ++ V  L+  GA  N
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPN 30

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 8e-04
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS 66
           R+   R  + +A   GH +V   L +
Sbjct: 98  RDAWGRLPVDLAEELGHRDVARYLRA 123

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (85), Expect = 2e-04
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 11  DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDES 70
           DK+   A + GD    K       +      N                  +EIL  +   
Sbjct: 3   DKEFMWALKNGDLDEVK-----DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 57

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
              +NA D+    P+ SA   G+V+ V++LLSKGAD  +K   G TAL    ++    I 
Sbjct: 58  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQA---IK 114

Query: 131 ELL 133
            LL
Sbjct: 115 ALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.98
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.98
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.84

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.3e-40  Score=237.70  Aligned_cols=199  Identities=26%  Similarity=0.279  Sum_probs=178.0

Q ss_pred             ccccCcHHHHHHHHcCChHHHHHHHHHhh-hhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcH
Q 028517            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQL-LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (208)
Q Consensus         6 ~~~~~~~~l~~a~~~g~~~~~~~l~~~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   84 (208)
                      .+..|+|+||.|++.|+.+++++|++.+. ......++..|.||||+|+..|+.+++++|++.|.+   ++..+..|.||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---i~~~d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTSCCH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc---ccccccccchh
Confidence            46788999999999999999999998763 233667788999999999999999999999998877   56778899999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCC-----------------------------------------------CCCCCCCCchH
Q 028517           85 IHSAASIGNVTIVEMLLSKGAD-----------------------------------------------VNLKNDGGRTA  117 (208)
Q Consensus        85 l~~a~~~~~~~~~~~Ll~~~~~-----------------------------------------------~~~~~~~~~~~  117 (208)
                      |+.|+..++.+++++|++.+..                                               ++.++..|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            9999999999999999875321                                               33456678999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccc
Q 028517          118 LHYAASKGWLKIVELLISRGAKINSK-DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFS  196 (208)
Q Consensus       118 l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  196 (208)
                      ||+|+..++.+++++|++++.+.+.. +..|.||||.|+..|+.+++++|+++|++++.+|.+|.||||+|+..++.+++
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~  241 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA  241 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999999999888754 66899999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccC
Q 028517          197 GCSSSNKTWSG  207 (208)
Q Consensus       197 ~~l~~~~~~~~  207 (208)
                      ++|+++|++.+
T Consensus       242 ~~Ll~~Ga~~~  252 (255)
T d1oy3d_         242 RLLRAHGAPEP  252 (255)
T ss_dssp             HHHHHTTCCCC
T ss_pred             HHHHHcCCCCC
Confidence            99999998753

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=227.12  Aligned_cols=193  Identities=30%  Similarity=0.354  Sum_probs=157.2

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (208)
                      ++..|..|+||||+|+..|+.++++++++..  ......+..+.++++.++..++.+++++|++.+.+   ++..+..|.
T Consensus        30 ~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d---~~~~d~~g~  104 (223)
T d1uoha_          30 ATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ---VNAVNQNGC  104 (223)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHT--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCC
T ss_pred             CcCcCCCCCCHHHHHHHhhhhcccccccccc--cccccccccccccccccccccccchhHHHhccCce---eEeeCCCCC
Confidence            4456777778888888888888888777655  24444556677777888888888888888776654   566777888


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~  162 (208)
                      ||||.|+..|+.+++++|+++|++++.++..|.||+|+++..+..+++++|...+.+++..|..|.||||.|+..|+.++
T Consensus       105 tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~  184 (223)
T d1uoha_         105 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE  184 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             chhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHH
Confidence            88998888888889998888888888888888888888888888888888888888888888888899999988888899


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccc
Q 028517          163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSS  201 (208)
Q Consensus       163 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  201 (208)
                      +++|+++|++++.+|.+|.||||+| ..|+.++++.|++
T Consensus       185 v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         185 AKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9988888888888888889998887 4688888888765

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-37  Score=218.06  Aligned_cols=192  Identities=36%  Similarity=0.467  Sum_probs=179.4

Q ss_pred             CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (208)
Q Consensus        10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~   89 (208)
                      +++.|+.++..|+.+.++.++... +.....+|..|+||||+|+..|+.+++++++..+..   ....+..+.++++.++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~   78 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAA   78 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---SCCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc---cccccccccccccccc
Confidence            567899999999999999999877 577888999999999999999999999999987655   3445567889999999


Q ss_pred             hcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHc
Q 028517           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (208)
Q Consensus        90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  169 (208)
                      ..++.+++++|++++++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||||.|+..+..+++++|.+.
T Consensus        79 ~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          79 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          170 GAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       170 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      +.+++.+|.+|.||||+|+..|+.+++++|++.++.
T Consensus       159 ~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad  194 (223)
T d1uoha_         159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS  194 (223)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cceeeeccCCCCceeccccccCcHHHHHHHHHCCCC
Confidence            999999999999999999999999999999987754

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.3e-35  Score=215.74  Aligned_cols=197  Identities=21%  Similarity=0.264  Sum_probs=170.4

Q ss_pred             cccccc-cCcHHHHHHHHcCChHHHHHHHHHhh------hhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccccc
Q 028517            3 MDIDQT-IKDKDLFKAAETGDSSTFKSLSKQQL------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN   75 (208)
Q Consensus         3 ~~~~~~-~~~~~l~~a~~~g~~~~~~~l~~~~~------~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~   75 (208)
                      ++..+. .++||||+|+..|+.++++.|+....      +.+++.+|..|+||||+|+..|+.+++++|++.|++   ++
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad---~n  101 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PT  101 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccc---cc
Confidence            444553 48999999999999999999986542      236778899999999999999999999999998877   56


Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHhCCC---C--------------------------------------------CC
Q 028517           76 AVDEEGWAPIHSAASIGNVTIVEMLLSKGA---D--------------------------------------------VN  108 (208)
Q Consensus        76 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~---~--------------------------------------------~~  108 (208)
                      ..+..|.|||+.|+..++.++++++...+.   .                                            .+
T Consensus       102 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (277)
T d2fo1e1         102 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  181 (277)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccc
Confidence            678899999999999999999888866411   0                                            22


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 028517          109 LKNDGGRTALHYAASKGWLKIVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA  187 (208)
Q Consensus       109 ~~~~~~~~~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A  187 (208)
                      ..+..|.|++++++..++.+++++++ ..+.+.+..|..|.||||.|+..|+.+++++|+++|++++.+|.+|.||||+|
T Consensus       182 ~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A  261 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  261 (277)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             ccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHH
Confidence            33446789999999999999998755 66888888999999999999999999999999999999999999999999999


Q ss_pred             HHhCCcccccccccc
Q 028517          188 VICYNKEFSGCSSSN  202 (208)
Q Consensus       188 ~~~~~~~~~~~l~~~  202 (208)
                      ++.|+.++|++|.+.
T Consensus       262 ~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         262 QANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHTTCHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHh
Confidence            999999999999863

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-34  Score=203.25  Aligned_cols=190  Identities=28%  Similarity=0.343  Sum_probs=144.9

Q ss_pred             cHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC---------
Q 028517           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG---------   81 (208)
Q Consensus        11 ~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~---------   81 (208)
                      ++|||.||+.|+.+.++.|++.. +.....++.+|.||||+|+..|+.+++++|++.++++......+..+         
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            47999999999999999999876 46778889999999999999999999999998877654333333334         


Q ss_pred             --------------------------CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHH
Q 028517           82 --------------------------WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS  135 (208)
Q Consensus        82 --------------------------~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  135 (208)
                                                .++++.++..++.+++++|++.+.....++..|.||+++++..|+.+++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence                                      455556666666666677777776677777777788888888888888877777


Q ss_pred             cC-CCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517          136 RG-AKINSKDKVGCTALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT  204 (208)
Q Consensus       136 ~~-~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~  204 (208)
                      .+ .+++.+|..|.||||+|+..|+.+++++|++ .|++++.+|.+|.|||++|+.   .+++++|++++.
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~  227 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVV  227 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCC
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCC
Confidence            65 5667777778888888888888888887775 477887777778888887763   467777777664

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=209.83  Aligned_cols=192  Identities=29%  Similarity=0.335  Sum_probs=168.4

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHh--hhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQ--LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~--~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (208)
                      .|+|+||+|+..|+.+.++.+++..  .+.+++.++..|+||||+|+..|+.+++++|++.+.+   ++..+..|.|||+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d---~~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD---PELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC---SCCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc---ccccccccccccc
Confidence            4789999999999987776665432  1346778899999999999999999999999998876   5677889999999


Q ss_pred             HHHhcCCHHHHHHHHhCCCCCCC------CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHhhCC
Q 028517           87 SAASIGNVTIVEMLLSKGADVNL------KNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGN  159 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~A~~~~~  159 (208)
                      .++..++.++++.|++.+.....      ....+.||++.|+..++.+++++++..|..++..+ .+|.||||.|++.|+
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~  157 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN  157 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccccc
Confidence            99999999999999997655332      24468899999999999999999999999887665 579999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK  203 (208)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  203 (208)
                      .+++++|+++|+|++.+|.+|.||+|+|+..++.+++++|.+..
T Consensus       158 ~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         158 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             HHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             HHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999998754

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=5e-34  Score=210.16  Aligned_cols=184  Identities=34%  Similarity=0.502  Sum_probs=148.5

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a   88 (208)
                      .+.++|+.|+..|+++.|++|++.+  .+++..|..|.||||+|+..|+.+++++|++.+..   ....+..+.+||+.+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~G--advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~---~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHAA  113 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcHHHHHHhcCCceeeeeecccccc---ccccccccccccccc
Confidence            3458999999999999999999876  57888899999999999999999999999998766   345567889999999


Q ss_pred             HhcCCHHHHHHHHhCCCCCCCCCC--------------------------------------------------------
Q 028517           89 ASIGNVTIVEMLLSKGADVNLKND--------------------------------------------------------  112 (208)
Q Consensus        89 ~~~~~~~~~~~Ll~~~~~~~~~~~--------------------------------------------------------  112 (208)
                      +..++.++++.|+++|...+..+.                                                        
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccc
Confidence            999999999999998776544443                                                        


Q ss_pred             ----CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 028517          113 ----GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV  188 (208)
Q Consensus       113 ----~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  188 (208)
                          .|.||++.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+
T Consensus       194 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             cccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence                3456777777777777777777777777777777777777777777777777777777777777777777777775


Q ss_pred             HhCCccccccccc
Q 028517          189 ICYNKEFSGCSSS  201 (208)
Q Consensus       189 ~~~~~~~~~~l~~  201 (208)
                      +    +++++|.+
T Consensus       274 e----~~~~~L~~  282 (291)
T d1s70b_         274 E----DILGYLEE  282 (291)
T ss_dssp             S----GGGHHHHH
T ss_pred             H----HHHHHHHH
Confidence            3    46655544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-33  Score=205.54  Aligned_cols=198  Identities=26%  Similarity=0.357  Sum_probs=166.3

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCC-CCCchHHHHHHhcCCHHHHHHHHhccccccc--------------
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILLSVDESANV--------------   73 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~--------------   73 (208)
                      .+++.|+.|++.|++++|++|++.+  .+++.++ ..|.||||+|+..|+.+++++|++.+.....              
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G--~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~   81 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCC--CCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhh
Confidence            4679999999999999999999877  4555444 5799999999999999999999873332110              


Q ss_pred             -----------------------------------------------------------ccccCCCCCcHHHHHHhcCCH
Q 028517           74 -----------------------------------------------------------VNAVDEEGWAPIHSAASIGNV   94 (208)
Q Consensus        74 -----------------------------------------------------------~~~~~~~~~~~l~~a~~~~~~   94 (208)
                                                                                 .......|.||||.|+..|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             cCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence                                                                       111123478899999999999


Q ss_pred             HHHHHHHhC-CCCCCCCCCCCchHHHHHHHcC----CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHc
Q 028517           95 TIVEMLLSK-GADVNLKNDGGRTALHYAASKG----WLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (208)
Q Consensus        95 ~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  169 (208)
                      +++++|+++ |++++..+..+.++...+...+    ...++++|+++|++++.++..|.||||.|+..|+.+++++|+++
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            999999974 7888888888888777655432    34688999999999999999999999999999999999999985


Q ss_pred             -CCCCCCCCCCCCCHHHHHHHhCCccccccccccccccCC
Q 028517          170 -GAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC  208 (208)
Q Consensus       170 -~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~  208 (208)
                       |++++.+|.+|.||||+|++.|+.|++++|+++|+..|+
T Consensus       242 ~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence             899999999999999999999999999999999988764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-33  Score=203.80  Aligned_cols=168  Identities=24%  Similarity=0.334  Sum_probs=151.6

Q ss_pred             cCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHH
Q 028517           39 SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL  118 (208)
Q Consensus        39 ~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l  118 (208)
                      .+.+++|.||||+||.+|+.+++++|++.+++...++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            45688999999999999999999999998888777888899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCC-----------------------------------------------CCCCCCCCCCcHH
Q 028517          119 HYAASKGWLKIVELLISRGA-----------------------------------------------KINSKDKVGCTAL  151 (208)
Q Consensus       119 ~~a~~~~~~~~~~~ll~~~~-----------------------------------------------~~~~~~~~~~t~l  151 (208)
                      ++|+..+..+++++|++.+.                                               +++.++..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            99999999999999875431                                               2345667799999


Q ss_pred             HHHHhhCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          152 HRGASTGNSALCELLIEEGAEVDAT-DKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       152 ~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |+|+..++.+++++|++.+++.+.. +..|.||||+|++.|+.+++++|++++...
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi  218 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP  218 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCC
Confidence            9999999999999999999988754 578999999999999999999999987543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-33  Score=198.85  Aligned_cols=165  Identities=23%  Similarity=0.255  Sum_probs=132.5

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhh-hccCCCCCCchHHHHHHhcCCHHHHHH-----------------
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEI-----------------   63 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~~~~-----------------   63 (208)
                      +++..+..|+||||.|+..|+.+++++|++.+... .....+..|.+|+++++..+..++++.                 
T Consensus        26 ~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (229)
T d1ixva_          26 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG  105 (229)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTS
T ss_pred             cccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46778899999999999999999999999764211 112334455555555555555555444                 


Q ss_pred             ------------------HHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCC-CCCCCCCCCCchHHHHHHHc
Q 028517           64 ------------------LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASK  124 (208)
Q Consensus        64 ------------------ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~~  124 (208)
                                        |+..+..   ....+..|.||||.|+..|+.+++++|++.+ ..++.+|..|.||||+|+..
T Consensus       106 ~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~  182 (229)
T d1ixva_         106 VTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  182 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             ccccccccccchhhhhhhhhhhccc---ccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccc
Confidence                              4443333   4456778999999999999999999999987 57788999999999999999


Q ss_pred             CCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCC
Q 028517          125 GWLKIVELLIS-RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE  172 (208)
Q Consensus       125 ~~~~~~~~ll~-~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~  172 (208)
                      |+.+++++|++ .|++++.+|..|.|||++|+.   .+++++|+++|+|
T Consensus       183 ~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             TCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            99999999996 599999999999999999984   5899999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-32  Score=193.49  Aligned_cols=186  Identities=28%  Similarity=0.350  Sum_probs=157.8

Q ss_pred             cCcHHHHHHHHcCChHHHHHHHHHhh--hhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517            9 IKDKDLFKAAETGDSSTFKSLSKQQL--LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (208)
Q Consensus         9 ~~~~~l~~a~~~g~~~~~~~l~~~~~--~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~   86 (208)
                      .|+||||.|++.|+.++++.|++...  +.+++.++..|.||||+|+..|+.+++++|++.++.   .+.....+.++++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~~~~~   78 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS---PMALDRHGQTAAH   78 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc---ccccccccccccc
Confidence            58999999999999999999987542  346778899999999999999999999999998766   3444556667777


Q ss_pred             HHHhcCCHHHHHHHHhC-------------------------------------CCCC-CCCCCCCchHHHHHHHcCCHH
Q 028517           87 SAASIGNVTIVEMLLSK-------------------------------------GADV-NLKNDGGRTALHYAASKGWLK  128 (208)
Q Consensus        87 ~a~~~~~~~~~~~Ll~~-------------------------------------~~~~-~~~~~~~~~~l~~a~~~~~~~  128 (208)
                      .|....+.++++.+...                                     .... ......+.++++.|+..+...
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            77776666666655553                                     2211 123446789999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccc
Q 028517          129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSG  197 (208)
Q Consensus       129 ~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  197 (208)
                      +++++++++.+.+..+..|.|||++|+..|+.+++++|+++|+|++.+|.+|.||||+|++.|+.|+|+
T Consensus       159 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         159 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999886

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-32  Score=207.24  Aligned_cols=195  Identities=28%  Similarity=0.363  Sum_probs=169.3

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhh-------------------------------hhhccCCCCCCchHHH
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQL-------------------------------LKSLSLRNDDDRTLLH   50 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~-------------------------------~~~~~~~~~~g~t~L~   50 (208)
                      +++..+..+.++|+.|+..|+.+++++|+..+.                               .......+..+.|||+
T Consensus       157 ~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~  236 (408)
T d1n11a_         157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH  236 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHH
Confidence            456667788889999999999999999886531                               0111234556677788


Q ss_pred             HHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHH
Q 028517           51 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV  130 (208)
Q Consensus        51 ~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  130 (208)
                      +|+..++.++++++...+..   .+..+..|.||++.|+..++.+++++|+++|++++..+..+.||++.++..+..+++
T Consensus       237 ~a~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         237 LAAQEGHAEMVALLLSKQAN---GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             HHHHTTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HHHHhCcHhHhhhhhccccc---cccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceee
Confidence            88888888888888765544   455677899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccc
Q 028517          131 ELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCS  199 (208)
Q Consensus       131 ~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  199 (208)
                      +++++.|++++.+|.+|.||||.|++.|+.+++++|+++|++++.+|.+|.||||+|++.|+.++|++|
T Consensus       314 ~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999866

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.1e-32  Score=189.85  Aligned_cols=193  Identities=24%  Similarity=0.291  Sum_probs=171.8

Q ss_pred             ccc-ccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            3 MDI-DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         3 ~~~-~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      ++. .|..|++|||+||+.|+.+++++|++.+  ..++.++..+.++++.++..++.+............  .......+
T Consensus        15 in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g--~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   90 (209)
T d1ot8a_          15 LNATMDKTGETSLHLAARFARADAAKRLLDAG--ADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN--LNARMHDG   90 (209)
T ss_dssp             HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCC--TTCCCTTC
T ss_pred             cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhc--cccccccccccccccccccccccccccccccccccc--cccccccc
Confidence            344 4678999999999999999999999865  466778889999999999999988777766533322  34445567


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~  161 (208)
                      .++.+.+.........+.|.+.+.+++.++..|.||+++++..+...+++.++.++.+++..|..|.||||.|+..|+.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~  170 (209)
T d1ot8a_          91 TTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE  170 (209)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccc
Q 028517          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCS  199 (208)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  199 (208)
                      ++++|+++|+|++.+|.+|.||||+|+++|+.++|++|
T Consensus       171 ~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         171 ASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.4e-32  Score=181.88  Aligned_cols=153  Identities=29%  Similarity=0.370  Sum_probs=137.7

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q 028517           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (208)
Q Consensus        47 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  126 (208)
                      ++||.|+..|+.+++++|++.|.+   ++.++..|.||||.|+ .++.+++++|++++++++.++..+.++++.++..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d---~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN---VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC---TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---cCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccc
Confidence            789999999999999999988776   5667888999999775 688999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517          127 LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA-EVDATDKAGQTPLMNAVICYNKEFSGCSSSNK  203 (208)
Q Consensus       127 ~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~  203 (208)
                      ...++.++.++.+++..+..+.+|++.|+..++.+++++|++++. +++.++.+|.||||+|+..++.+++++|+++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999998888999999999999999999999998875 78888999999999999999999999998875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.1e-31  Score=179.12  Aligned_cols=152  Identities=25%  Similarity=0.369  Sum_probs=106.6

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q 028517           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (208)
Q Consensus        47 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  126 (208)
                      +.|+.||..|+.+++++|++.+.  ..++..+..|+||||+|+. ++.+++++|++++.+++.++..+.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~--~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHREL--VHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTC--CCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCC--CCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            34677777777777777765422  1255566677777776653 66677777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517          127 LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       127 ~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~  202 (208)
                      .++++++++++++++.++..|.||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        81 ~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            77777777777777777777777777777777777777665 5677777777777777777777777777777664

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.4e-31  Score=176.03  Aligned_cols=150  Identities=33%  Similarity=0.435  Sum_probs=108.1

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC
Q 028517           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG  125 (208)
Q Consensus        46 ~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~  125 (208)
                      .|||+.|++.|+.+++++|++.+++.   + .+..|.||||+|+..++.++++.++.........+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~---~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF---T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC---C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc---c-cccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            36777777777777777777766542   2 4566777777777777777777777766666556666677777777777


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccc
Q 028517          126 WLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCS  199 (208)
Q Consensus       126 ~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  199 (208)
                      ..++++++.+++++.+.++..|.||||+|+..|+.+++++|+++|++++.+|.+|.|||++|+..|+.|++++|
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-30  Score=174.44  Aligned_cols=153  Identities=27%  Similarity=0.395  Sum_probs=140.9

Q ss_pred             cHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHh
Q 028517           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (208)
Q Consensus        11 ~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (208)
                      .++|+.|+..|+.+.|++|++.. +.+++..|..|.||||+|+. |+.+++++|++.+.+   ++..+..+.+|++.++.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~---~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS---PNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCcccccccc-ccccccccccccccc---ccccccccccccccccc
Confidence            46799999999999999999876 56788889999999999874 899999999987776   56667789999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHc
Q 028517           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE  169 (208)
Q Consensus        91 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  169 (208)
                      .++.++++++++++++++.++..|.||+|+|+..|+.+++++|+ .|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        78 ~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999887 6889999999999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-30  Score=172.64  Aligned_cols=153  Identities=31%  Similarity=0.469  Sum_probs=143.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhc
Q 028517           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (208)
Q Consensus        12 ~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~   91 (208)
                      ++||.|+..|+.++|+.|++.+  .+++.+|..|.||||+|+ .|+.+++++|++.+.+   ++..+..+.++++.++..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g--~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~---~~~~~~~~~~~l~~~~~~   76 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN---PDLKDRTGFAVIHDAARA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCcCccCCcccccccccc-cccccccccccccccc---cccccccCcccccccccc
Confidence            7999999999999999999876  578889999999999886 7999999999998876   566778899999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC
Q 028517           92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCELLIEEG  170 (208)
Q Consensus        92 ~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~  170 (208)
                      ++.+.++.+++.+..++..+..+.+|+++|+..++.+++++|++++. +.+.+|..|.||||+|+..++.+++++|+++|
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          77 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999976 78889999999999999999999999999986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-29  Score=193.55  Aligned_cols=202  Identities=28%  Similarity=0.374  Sum_probs=180.3

Q ss_pred             cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccc---------
Q 028517            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV---------   73 (208)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~---------   73 (208)
                      .+..+..+.++++.|+..++.++++.|++.+  .++...+..|.+||++|+..|+.+++++|+..+.+...         
T Consensus       125 ~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~--~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  202 (408)
T d1n11a_         125 QACMTKKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL  202 (408)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH
T ss_pred             ccccccccchHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcc
Confidence            4566778899999999999999999999876  46777888999999999999999999999987665321         


Q ss_pred             ---------------------ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHH
Q 028517           74 ---------------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL  132 (208)
Q Consensus        74 ---------------------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  132 (208)
                                           ....+..+.|||+.|+..+..+++++++..+...+..+..|.+|++.++..++.+++++
T Consensus       203 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~  282 (408)
T d1n11a_         203 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV  282 (408)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             hhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHH
Confidence                                 11223456788888889999999999999888888889999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       133 ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      |+++|++++..+..+.|||+.++..+..++++++++.|++++.+|.+|.||||+|++.|+.++|++|+++++..
T Consensus       283 Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~  356 (408)
T d1n11a_         283 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP  356 (408)
T ss_dssp             HHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.8e-29  Score=165.25  Aligned_cols=150  Identities=36%  Similarity=0.478  Sum_probs=137.0

Q ss_pred             cHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHh
Q 028517           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (208)
Q Consensus        11 ~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~   90 (208)
                      .+||+.|++.|+.++|++|++.+.  +.. .+..|+||||+|+..++.+.++.++.....   .......+.++++.++.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga--~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   76 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCC--Ccc-cccCCCcccccccccccccccccccccccc---ccccccccccccccccc
Confidence            489999999999999999999873  333 688999999999999999999999875544   34455677889999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL  166 (208)
Q Consensus        91 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L  166 (208)
                      ..+.++++++.+++.+...++..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+.+|+.+++++|
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999976

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.7e-28  Score=180.37  Aligned_cols=160  Identities=34%  Similarity=0.449  Sum_probs=145.8

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 028517           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (208)
Q Consensus        44 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~  123 (208)
                      .+.|+|+.||..|+.+++++|++.|.+   ++..+..|.||||.|+..|+.+++++|++++.+....+..+.+|++.++.
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gad---vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGAD---INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccc
Confidence            356999999999999999999998877   67788999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCC------------------------------------------------------------CC
Q 028517          124 KGWLKIVELLISRGAKIN------------------------------------------------------------SK  143 (208)
Q Consensus       124 ~~~~~~~~~ll~~~~~~~------------------------------------------------------------~~  143 (208)
                      .++.+++++|+++|...+                                                            ..
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            999999999998765332                                                            23


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       144 ~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      +..|.|||+.|+..|+.+++++|+++|++++.++.+|.||||+|+..|+.++|++|+++++..
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv  258 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM  258 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            356789999999999999999999999999999999999999999999999999999987643

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-29  Score=163.81  Aligned_cols=120  Identities=27%  Similarity=0.303  Sum_probs=92.6

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHhhCC
Q 028517           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGC-TALHRGASTGN  159 (208)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-t~l~~A~~~~~  159 (208)
                      +.++||.|++.|+.+++++|+++|++++.++..|.||++.|+ .|+.+++++|+++|++++..+..+. ||||.|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            456777888888888888888777777777777777777553 5777788888887777777776654 57888888888


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccc
Q 028517          160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSS  201 (208)
Q Consensus       160 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  201 (208)
                      .+++++|+++|++++.+|.+|.||+|+|++.|+.+++++|++
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            888888888888888888888888888888888888887765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=5.9e-32  Score=203.65  Aligned_cols=196  Identities=15%  Similarity=0.101  Sum_probs=151.2

Q ss_pred             ccccccCcHHHHHHHHcCChHHHHHH---HHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCC
Q 028517            4 DIDQTIKDKDLFKAAETGDSSTFKSL---SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (208)
Q Consensus         4 ~~~~~~~~~~l~~a~~~g~~~~~~~l---~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~   80 (208)
                      +..+..+.++|+.|++.|+.+.++++   +..  +.+++..+..|.||||+||..|+.+++++|++.+++.. ....+..
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~--~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~-~~~~~~~  160 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI-MAMIQAE  160 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH-HHHHSHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC--CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-ccccccC
Confidence            34566789999999999999888774   433  35777888999999999999999999999999887643 1223346


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCCCCC---CCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--------------
Q 028517           81 GWAPIHSAASIGNVTIVEMLLSKGADVN---LKNDGGRTALHYAASKGWLKIVELLISRGAKINSK--------------  143 (208)
Q Consensus        81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~---~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~--------------  143 (208)
                      |.||||.|++.|+.+++++|++.|+...   ..+..+.+|++.|+.+|+.+++++|+++|++++..              
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  240 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP  240 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhH
Confidence            8999999999999999999999987653   23345678888899999999999999876422110              


Q ss_pred             -------------------CCC----------------CCcHHHHHHhhCCHHHHHHHHHcCCC-----CCCCCCCCCCH
Q 028517          144 -------------------DKV----------------GCTALHRGASTGNSALCELLIEEGAE-----VDATDKAGQTP  183 (208)
Q Consensus       144 -------------------~~~----------------~~t~l~~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~g~t~  183 (208)
                                         ...                +.++++.|...+..+++++|++.+..     ....+.+|.||
T Consensus       241 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~  320 (346)
T d2ajaa1         241 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  320 (346)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             HHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcH
Confidence                               011                12466677778889999999987653     23445679999


Q ss_pred             HHHHHHhCCcccccccccc
Q 028517          184 LMNAVICYNKEFSGCSSSN  202 (208)
Q Consensus       184 l~~A~~~~~~~~~~~l~~~  202 (208)
                      ||+|++.|+.+++++|++.
T Consensus       321 LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         321 LRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHcCcHHHHHHHhCC
Confidence            9999999999999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=174.79  Aligned_cols=169  Identities=26%  Similarity=0.296  Sum_probs=150.4

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccc---ccccccC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA---NVVNAVD   78 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~---~~~~~~~   78 (208)
                      +++..+..|+||||+|++.|+.+++++|++.+  .++..++..|.|||+.|+..|+.++++.++..+...   .......
T Consensus        31 ~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g--~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (221)
T d1iknd_          31 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  108 (221)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             CcccCCCCCCcccccccccccccccccccccc--ccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence            46778899999999999999999999998865  577888999999999999999999999999765432   1233344


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh
Q 028517           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST  157 (208)
Q Consensus        79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~  157 (208)
                      ..+.|||+.|+..++.+++++|++.+...+..+ ..|.||+|+|+..|+.+++++|+++|+|++.++..|.|||++|+..
T Consensus       109 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~  188 (221)
T d1iknd_         109 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR  188 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred             cccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHC
Confidence            568999999999999999999999998887765 4799999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCC
Q 028517          158 GNSALCELLIEEGAE  172 (208)
Q Consensus       158 ~~~~~~~~Ll~~~~~  172 (208)
                      ++.+++++|++...+
T Consensus       189 ~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         189 PSTRIQQQLGQLTLE  203 (221)
T ss_dssp             SCHHHHHHHHTTSCG
T ss_pred             CCHHHHHHHHHcCCc
Confidence            999999999987654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=2.4e-29  Score=160.96  Aligned_cols=116  Identities=32%  Similarity=0.423  Sum_probs=108.1

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA  161 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~  161 (208)
                      .|||++|++.|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccc
Q 028517          162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSS  201 (208)
Q Consensus       162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~  201 (208)
                      ++++|+++|+|++.+|.+|.||+|+|    ..+.++.|++
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a----~~~~i~~LL~  118 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEAT----DNQAIKALLQ  118 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTC----SSTTTGGGGC
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHH----hHHHHHHhcC
Confidence            99999999999999999999999998    3356666653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=6.4e-27  Score=170.49  Aligned_cols=165  Identities=22%  Similarity=0.329  Sum_probs=143.7

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccc-----------
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDES-----------   70 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~-----------   70 (208)
                      |+|..+..|+||||+|++.|+.+++++|++.+  .+++.++..|.|||+.|+..++.++++++......           
T Consensus        66 dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G--ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  143 (277)
T d2fo1e1          66 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  143 (277)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CccccCCCCCeeeccccccccccccccccccc--cccccccccccccccchhhhcchhhhhhhhhccccccccccccccc
Confidence            57788999999999999999999999999876  57888899999999999999999998887652110           


Q ss_pred             ---------------------------------cccccccCCCCCcHHHHHHhcCCHHHHHHHH-hCCCCCCCCCCCCch
Q 028517           71 ---------------------------------ANVVNAVDEEGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRT  116 (208)
Q Consensus        71 ---------------------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~  116 (208)
                                                       .......+..|.|||+.++..++.+++++++ ..+...+.++..|.|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~t  223 (277)
T d2fo1e1         144 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  223 (277)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             chhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCC
Confidence                                             0001223456889999999999999998755 478888889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH
Q 028517          117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE  168 (208)
Q Consensus       117 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~  168 (208)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|++
T Consensus       224 pL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         224 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-27  Score=154.33  Aligned_cols=121  Identities=26%  Similarity=0.389  Sum_probs=111.2

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCc-hHHHHHH
Q 028517           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR-TALHYAA  122 (208)
Q Consensus        44 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~l~~a~  122 (208)
                      .+.++||.|+..|+.+++++|++.|.+   ++..+..|.||++.|+ .|+.+++++|+++|++++.++..+. +|+|+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad---~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC---TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc---cccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            467899999999999999999998876   5677889999999765 6999999999999999999888776 6999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH
Q 028517          123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE  168 (208)
Q Consensus       123 ~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~  168 (208)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+.
T Consensus        78 ~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-27  Score=154.02  Aligned_cols=121  Identities=31%  Similarity=0.369  Sum_probs=103.5

Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL  162 (208)
Q Consensus        83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~  162 (208)
                      ++|+.|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++..|.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            56888999999999999999999898888899999999999999999999999999988888899999999999999999


Q ss_pred             HHHHHHcCCCCCCCC-CCCCCHHHHH--HHhCCccccccccccc
Q 028517          163 CELLIEEGAEVDATD-KAGQTPLMNA--VICYNKEFSGCSSSNK  203 (208)
Q Consensus       163 ~~~Ll~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~l~~~~  203 (208)
                      +++|+++|++++..+ ..+.||++++  ...|+.|++++|++..
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999888766 4577876665  5678889999887643

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-25  Score=158.32  Aligned_cols=160  Identities=21%  Similarity=0.227  Sum_probs=138.9

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHh----cccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHH
Q 028517           43 DDDRTLLHVAASCGHPEVVEILLS----VDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL  118 (208)
Q Consensus        43 ~~g~t~L~~A~~~g~~~~~~~ll~----~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l  118 (208)
                      ++|.||||+||..|+.+++++|++    .+.+   ++..+..|+||||.|+..|+.+++++|+++|+..+.....+.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~---in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE---LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCccCCCCCccceehhccccccccccccccccccccccccccccc
Confidence            469999999999999999999875    3333   677888999999999999999999999999999999888999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCC-------------------------------------C-CCCCCCCCCcHHHHHHhhCCH
Q 028517          119 HYAASKGWLKIVELLISRGA-------------------------------------K-INSKDKVGCTALHRGASTGNS  160 (208)
Q Consensus       119 ~~a~~~~~~~~~~~ll~~~~-------------------------------------~-~~~~~~~~~t~l~~A~~~~~~  160 (208)
                      +.+...+..++++.+.....                                     + .......+.++++.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            99888888877776654321                                     1 112345688999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517          161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW  205 (208)
Q Consensus       161 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~  205 (208)
                      .++++++++|.+.+.++..|.|||++|+..|+.+++++|+++++.
T Consensus       158 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad  202 (228)
T d1k1aa_         158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD  202 (228)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             hhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCC
Confidence            999999999999999999999999999999999999999998754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=6.4e-26  Score=158.79  Aligned_cols=180  Identities=29%  Similarity=0.342  Sum_probs=158.9

Q ss_pred             hHHHHHHHHHhhhhhccC-CCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 028517           23 SSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL  101 (208)
Q Consensus        23 ~~~~~~l~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  101 (208)
                      -|+|+.|++.+.  +++. .|.+|.||||+||..|+.+++++|++.+..   ++..+..+.++++.++..++........
T Consensus         2 ~~~v~~Ll~~g~--din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1ot8a_           2 AQVISDLLAQGA--ELNATMDKTGETSLHLAARFARADAAKRLLDAGAD---ANSQDNTGRTPLHAAVAADAMGVFQILL   76 (209)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCC--CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc---cccccccccccccccccccccccccccc
Confidence            489999999874  5654 478999999999999999999999998877   5677888999999999999988877777


Q ss_pred             hCCCC-CCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCC
Q 028517          102 SKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG  180 (208)
Q Consensus       102 ~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g  180 (208)
                      ..... .......+.++.+.+.........+.|..++.+++..+..|.||++.++..+...+++.+++++.+++..|..|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g  156 (209)
T d1ot8a_          77 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD  156 (209)
T ss_dssp             TCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccc
Confidence            75433 33345578889999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHhCCccccccccccccccC
Q 028517          181 QTPLMNAVICYNKEFSGCSSSNKTWSG  207 (208)
Q Consensus       181 ~t~l~~A~~~~~~~~~~~l~~~~~~~~  207 (208)
                      .||||+|+..|+.+++++|+++++..+
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~gad~n  183 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNFANRE  183 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ccccchhccccHHHHHHHHHHCCCCCC
Confidence            999999999999999999999887543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.5e-27  Score=174.34  Aligned_cols=177  Identities=15%  Similarity=0.174  Sum_probs=111.1

Q ss_pred             Ccccc-cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCH-------HHHHHHHhccccccc
Q 028517            2 DMDID-QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHP-------EVVEILLSVDESANV   73 (208)
Q Consensus         2 ~~~~~-~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~-------~~~~~ll~~~~~~~~   73 (208)
                      |+|.. |..|+|+||+|++.|+.++|++|++.+  .++..+|..|+||||.||..++.       ++++++..   .   
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g--ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~---  169 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---C---  169 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---G---
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---h---
Confidence            34433 677888888888888888888888665  46677778888888888876642       33444321   1   


Q ss_pred             ccccCCCCCcHHHHHHhcCC----HHH--------HHHHHhCCCCCC-CCCCCCchHHHHHHHcCCHHH-----HHHHHH
Q 028517           74 VNAVDEEGWAPIHSAASIGN----VTI--------VEMLLSKGADVN-LKNDGGRTALHYAASKGWLKI-----VELLIS  135 (208)
Q Consensus        74 ~~~~~~~~~~~l~~a~~~~~----~~~--------~~~Ll~~~~~~~-~~~~~~~~~l~~a~~~~~~~~-----~~~ll~  135 (208)
                      ....+..|.||||.++..+.    ...        +.++++.+.... .....+.++++.+........     +.+++.
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            34456677888887664432    222        334444433222 222233344433332222221     122233


Q ss_pred             cCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 028517          136 RGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV  188 (208)
Q Consensus       136 ~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~  188 (208)
                      .  .+|.+|..|+||||+|++.|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       250 ~--~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 N--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             H--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             c--CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            2  25778999999999999999999999999999999999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4e-25  Score=161.53  Aligned_cols=171  Identities=31%  Similarity=0.333  Sum_probs=144.5

Q ss_pred             cccccCcHHHHHHHHcCChHHHHHHHHHhhh--------hhccCCCCCCchHHHHHHhcCCHHHHHHHHhc-cccccccc
Q 028517            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLL--------KSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVN   75 (208)
Q Consensus         5 ~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~--------~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~-~~~~~~~~   75 (208)
                      ..+..+.+.++.|+..|....+..++.....        .........|.||||+|+..|+.+++++|++. +.+   ++
T Consensus       100 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~---i~  176 (285)
T d1wdya_         100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD---VN  176 (285)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC---TT
T ss_pred             ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCC---cc
Confidence            3456778899999999999999999874321        11223456799999999999999999999964 333   56


Q ss_pred             ccCCCCCcHHHHHHhc----CCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcH
Q 028517           76 AVDEEGWAPIHSAASI----GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTA  150 (208)
Q Consensus        76 ~~~~~~~~~l~~a~~~----~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~  150 (208)
                      ..+..+.++...+...    +..+++++|+++|++++.++..|.||||+|+..++.+++++|+++ |++++.+|.+|.||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~Tp  256 (285)
T d1wdya_         177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA  256 (285)
T ss_dssp             CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCH
T ss_pred             cccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCH
Confidence            6677787777665433    346799999999999999999999999999999999999999975 89999999999999


Q ss_pred             HHHHHhhCCHHHHHHHHHcCCCCCCCCC
Q 028517          151 LHRGASTGNSALCELLIEEGAEVDATDK  178 (208)
Q Consensus       151 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  178 (208)
                      ||.|+..|+.+++++|+++|+|++.+|.
T Consensus       257 L~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         257 LLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            9999999999999999999999998874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=5.1e-27  Score=150.01  Aligned_cols=107  Identities=35%  Similarity=0.410  Sum_probs=96.5

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcC
Q 028517           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG  125 (208)
Q Consensus        46 ~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~  125 (208)
                      .|||++|+..|+.+++++|++.|.+   ++..+..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d---~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC---CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc---cccccccccccccccccccccccccccccccceeeecccccccchhhhhhcC
Confidence            4799999999999999999988776   5667888999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 028517          126 WLKIVELLISRGAKINSKDKVGCTALHRGA  155 (208)
Q Consensus       126 ~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~  155 (208)
                      +.+++++|+++|++++.+|..|.|||+.|.
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999998873

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.8e-25  Score=147.93  Aligned_cols=124  Identities=19%  Similarity=0.179  Sum_probs=85.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhcccccc---cccccCCCCCcHHHHHHhc---CCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517           48 LLHVAASCGHPEVVEILLSVDESAN---VVNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (208)
Q Consensus        48 ~L~~A~~~g~~~~~~~ll~~~~~~~---~~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a  121 (208)
                      .|..|+..+++..+..++..+.+..   .....+..|.||||+|++.   ++.+++++|+++|++++.+|..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            3456667777777777766554321   1222345667777777753   567777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCC
Q 028517          122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA  171 (208)
Q Consensus       122 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~  171 (208)
                      +..|+.+++++|+++|++++..|..|.||||+|++.|+.+++++|++.+.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            77777777777777777777777777777777777777777777776543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.3e-25  Score=143.84  Aligned_cols=120  Identities=24%  Similarity=0.332  Sum_probs=105.8

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q 028517           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (208)
Q Consensus        47 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  126 (208)
                      ++|+.||..|+.+++++|++.|.+   ++.++..|+||||.|+..++.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d---~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS---CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC---ccccccccccccccccccccccccccccccccccccccccCcccccccchhhH
Confidence            678999999999999999988876   56778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCC-CCCcHHHHH--HhhCCHHHHHHHHHc
Q 028517          127 LKIVELLISRGAKINSKDK-VGCTALHRG--ASTGNSALCELLIEE  169 (208)
Q Consensus       127 ~~~~~~ll~~~~~~~~~~~-~~~t~l~~A--~~~~~~~~~~~Ll~~  169 (208)
                      .+++++|+++|++++..+. .+.||+..+  ...|+.+++++|+..
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999999887654 577876655  577889999999864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=1.9e-26  Score=173.35  Aligned_cols=168  Identities=17%  Similarity=0.164  Sum_probs=128.6

Q ss_pred             CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (208)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   81 (208)
                      +++..+..+.+|||.|++.|+.++|++|++.+...+....+..|.||||+|+..|+.+++++|++.++.....+..+..+
T Consensus       118 ~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~  197 (346)
T d2ajaa1         118 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY  197 (346)
T ss_dssp             SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCC
Confidence            46677888999999999999999999999876422333334568999999999999999999999887654444455567


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCCCCC---------------------------------CCC---------------
Q 028517           82 WAPIHSAASIGNVTIVEMLLSKGADVNLK---------------------------------NDG---------------  113 (208)
Q Consensus        82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~---------------------------------~~~---------------  113 (208)
                      .+|++.|+..|+.+++++|++.|++++..                                 ...               
T Consensus       198 ~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~  277 (346)
T d2ajaa1         198 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF  277 (346)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHH
T ss_pred             cchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccc
Confidence            78899999999999999999876432110                                 000               


Q ss_pred             -CchHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCcHHHHHHhhCCHHHHHHHHHc
Q 028517          114 -GRTALHYAASKGWLKIVELLISRGAK-----INSKDKVGCTALHRGASTGNSALCELLIEE  169 (208)
Q Consensus       114 -~~~~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~  169 (208)
                       +.++++.+...+..+++++|++.+..     ....+.+|+||||+|++.|+.+++++|++.
T Consensus       278 ~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         278 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence             12456666677889999999987653     223445789999999999999999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.6e-23  Score=137.60  Aligned_cols=119  Identities=22%  Similarity=0.292  Sum_probs=60.9

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhhhccC------CCCCCchHHHHHHhc---CCHHHHHHHHhcccccccccccCCCCCc
Q 028517           13 DLFKAAETGDSSTFKSLSKQQLLKSLSL------RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEEGWA   83 (208)
Q Consensus        13 ~l~~a~~~g~~~~~~~l~~~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~~~~   83 (208)
                      .|+.|++.+++..+..++..+.  +...      .+..|+||||+|+..   |+.+++++|++.|.+   ++.++..|.|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~--d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---in~~d~~g~T   83 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGV--DLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGST   83 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC--CTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCC--CcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC---hhhhhhhhcc
Confidence            4455555555555555544331  2111      133455555555542   344555555554443   3444555555


Q ss_pred             HHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc
Q 028517           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (208)
Q Consensus        84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  136 (208)
                      |||.|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|++.
T Consensus        84 pLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          84 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            55555555555555555555555555555555555555555555555555544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.6e-21  Score=143.72  Aligned_cols=34  Identities=21%  Similarity=0.037  Sum_probs=31.1

Q ss_pred             CCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517          173 VDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS  206 (208)
Q Consensus       173 ~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~  206 (208)
                      ++.+|.+|.||||+|++.|+.++|++|++.++..
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~  285 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADP  285 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            6788999999999999999999999999988754