Citrus Sinensis ID: 028535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAEGFSDMEEFRDLHACLDELKTKLQSGPVAT
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cEEEccccccEcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHccccccEHEEEEEHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mvlnmtnnkriDTVLLERIVLDmegrtsiiesescrtthnlnrtnntcakdlpvesvhvsspeesimgrSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYqgsdlwkdrdrfkrFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQaegfsdmeEFRDLHACLDELKtklqsgpvat
Flexible Loop (DISEMBL)
mvlnmtnnkridtvLLERIVLDmegrtsiiesescrtthnlnrtnntcakdlpvesvhvsspeesIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSyqgsdlwkdrdRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAEGFSDMEEFRDLHACLDElktklqsgpvat
Low Complexity Region (SEG)
MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCrtthnlnrtnntCAKDLpvesvhvsspeesIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAEGFSDMEEFRDLHACLDELKTKLQSGPVAT
Disordered region (IsUnstruct)
*********RIDTVLLERIVLDMEGRTSIIE********************************************LMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEI*********LFAAEMHLKNVLKQA*GF****EFRDLHACL**************
Disordered Region (DISOPRED)
*******NKRIDTVLLERIVLDM******************************************************EFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQ*SDLWKDRDRFKRFSYASLELCKVYME*************AEMHLKNVLKQ****SDMEEFRDLHACLDELKTK********
Disordered Region (DISEMBL)
MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVE**********IMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAEGFSDMEEFRDLHACLDELKTK********
Disordered Region (DISPRO)
MVLNMTNNKRIDTVLLERIVLDMEGR*******************************************SRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAEGFSDMEEFRDLHACLDELKTKLQS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAEGFSDMEEFRDLHACLDELKTKLQSGPVAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
255571269	891	conserved hypothetical protein [Ricinus	0.946	0.219	0.612	7e-65
296084812	904	unnamed protein product [Vitis vinifera]	0.908	0.207	0.599	2e-60
359480921	909	PREDICTED: tetratricopeptide repeat prot	0.913	0.207	0.597	7e-60
224077388	718	predicted protein [Populus trichocarpa]	0.956	0.275	0.591	8e-59
147857479	851	hypothetical protein VITISV_000768 [Viti	1.0	0.243	0.519	6e-57
356507408	910	PREDICTED: tetratricopeptide repeat prot	0.990	0.225	0.550	7e-53
356518832	813	PREDICTED: uncharacterized protein LOC10	0.966	0.246	0.556	7e-52
449468426	897	PREDICTED: tetratricopeptide repeat prot	0.855	0.197	0.534	3e-51
449516270	482	PREDICTED: LOW QUALITY PROTEIN: tetratri	0.855	0.367	0.534	6e-51
297807747	892	tetratricopeptide repeat-containing prot	0.893	0.207	0.507	2e-49

>gi|255571269|ref|XP_002526584.1| conserved hypothetical protein [Ricinus communis] gi|223534078|gb|EEF35796.1| conserved hypothetical protein [Ricinus communis]

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 133/217 (61%), Positives = 156/217 (71%), Gaps = 21/217 (9%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           MVL++T+ K++D  LLERI+L++EGR S   S     T + N TN TC  D   +S    
Sbjct: 679 MVLHITSCKQVDADLLERIMLEIEGRASSRHSIYLPATGDTNSTNQTCFDDSQNDS---- 734

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQ 120
              E   G SRE E L+E  GKILQQ+++S+S AD+WGLYARW K KGDLTMCSEALLKQ
Sbjct: 735 ---EVQAGWSRETEQLVELFGKILQQIIKSDSRADIWGLYARWHKIKGDLTMCSEALLKQ 791

Query: 121 VRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLK----- 175
           VRSYQGSDLWKDRDRFK+F++ASLELCKVYMEISSS+GSRRELFAAEMHLKN +K     
Sbjct: 792 VRSYQGSDLWKDRDRFKKFAHASLELCKVYMEISSSTGSRRELFAAEMHLKNTVKQAKYP 851

Query: 176 ---------QAEGFSDMEEFRDLHACLDELKTKLQSG 203
                    QAE FS+ EEF DL  CLDE+K KLQS 
Sbjct: 852 REKRSSLKSQAESFSNTEEFSDLQTCLDEVKVKLQSA 888

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084812|emb|CBI27694.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/207 (59%), Positives = 149/207 (71%), Gaps = 19/207 (9%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           MVL++TNNKRID+ LLERI L+ME RTS     S    ++ N T +T   D  V      
Sbjct: 717 MVLDLTNNKRIDSELLERITLEMEKRTSTRHPVSPEAANDDNCTKSTHPSDSNVI----- 771

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQ 120
                         H++E LGK+LQ++VRS   AD+WGLYARW K KGDLTMCSEALLKQ
Sbjct: 772 --------------HVVEMLGKVLQKIVRSGGRADIWGLYARWHKLKGDLTMCSEALLKQ 817

Query: 121 VRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAEGF 180
           VRSYQGSD+WKDRDRFK+F++ASLELC VYMEISSS+GS REL AAEMHLKN++KQAE  
Sbjct: 818 VRSYQGSDMWKDRDRFKKFAHASLELCNVYMEISSSTGSHRELLAAEMHLKNIVKQAESS 877

Query: 181 SDMEEFRDLHACLDELKTKLQSGPVAT 207
           SD EEF+D+ ACL E+K KL+S  + T
Sbjct: 878 SDTEEFKDVQACLVEVKMKLESKSLPT 904

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480921|ref|XP_002268108.2| PREDICTED: tetratricopeptide repeat protein 27 homolog [Vitis vinifera]

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 126/211 (59%), Positives = 153/211 (72%), Gaps = 22/211 (10%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           MVL++TNNKRID+ LLERI L+ME RTS     S    ++ N     C K          
Sbjct: 717 MVLDLTNNKRIDSELLERITLEMEKRTSTRHPVSPEAANDDN-----CTK---------- 761

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQ 120
              +S +G S E E+L+E LGK+LQ++VRS   AD+WGLYARW K KGDLTMCSEALLKQ
Sbjct: 762 ---KSRVGISWETENLVEMLGKVLQKIVRSGGRADIWGLYARWHKLKGDLTMCSEALLKQ 818

Query: 121 VRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAEGF 180
           VRSYQGSD+WKDRDRFK+F++ASLELC VYMEISSS+GS REL AAEMHLKN++KQA  +
Sbjct: 819 VRSYQGSDMWKDRDRFKKFAHASLELCNVYMEISSSTGSHRELLAAEMHLKNIVKQARYY 878

Query: 181 ----SDMEEFRDLHACLDELKTKLQSGPVAT 207
               SD EEF+D+ ACL E+K KL+S  + T
Sbjct: 879 LLSSSDTEEFKDVQACLVEVKMKLESKSLPT 909

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077388|ref|XP_002305241.1| predicted protein [Populus trichocarpa] gi|222848205|gb|EEE85752.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 150/203 (73%), Gaps = 5/203 (2%)

Query: 1   MVLNMTNNK----RIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVES 56
           MVLN+T+ K     ID  +LERI+L++E R S    +    + + + T   C  D   +S
Sbjct: 514 MVLNITSGKATGKEIDADILERIMLEIEERISRRPFKPPSVSDDTSLTTQHCPDDSHNDS 573

Query: 57  VHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEA 116
           ++  S +   +GRSRE E L++ LGKILQQ+V+  S AD+WGLYARW K KGDLTMCSEA
Sbjct: 574 IN-KSEQRIAVGRSRETEQLVDLLGKILQQIVKRVSRADIWGLYARWHKLKGDLTMCSEA 632

Query: 117 LLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQ 176
           LLKQVRSYQGSDLWKDRDRFK ++ ASLELCKVYMEISSS+GS REL  AEMHLKN+++Q
Sbjct: 633 LLKQVRSYQGSDLWKDRDRFKLYARASLELCKVYMEISSSTGSHRELSTAEMHLKNIVRQ 692

Query: 177 AEGFSDMEEFRDLHACLDELKTK 199
           A  FSD EEF+D+ ACLDE+K +
Sbjct: 693 AGSFSDTEEFKDVQACLDEVKKR 715

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857479|emb|CAN80781.1| hypothetical protein VITISV_000768 [Vitis vinifera]

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 131/252 (51%), Positives = 157/252 (62%), Gaps = 45/252 (17%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           MVL++TNNKRID+ LLERI L+ME RTS     S    ++ N T +T   D  V  V   
Sbjct: 600 MVLDLTNNKRIDSELLERITLEMEKRTSTRHPVSPEAANDDNCTKSTHPSDSNVIHVGDL 659

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQ---------------------------------- 86
              ES +G S E E+L+E LGK+LQ+                                  
Sbjct: 660 MSSESRVGISWETENLVEMLGKVLQKKQTYDRVYFCLLGNDKMKTTHLQGWFTIRGIFHS 719

Query: 87  -----VVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSY 141
                +VRS   AD+WGLYARW K KGDLTMCSEALLKQVRSYQGSD+WKDRDRFK+F++
Sbjct: 720 TKHIXIVRSGGRADIWGLYARWHKLKGDLTMCSEALLKQVRSYQGSDMWKDRDRFKKFAH 779

Query: 142 ASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQ------AEGFSDMEEFRDLHACLDE 195
           ASLELC VYMEISSS+GS REL AAEMHLKN++KQ      AE  SD EEF+D+ ACL E
Sbjct: 780 ASLELCNVYMEISSSTGSHRELLAAEMHLKNIVKQARYYLLAESXSDTEEFKDVQACLVE 839

Query: 196 LKTKLQSGPVAT 207
           +K KL+S  + T
Sbjct: 840 VKMKLESKSLPT 851

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507408|ref|XP_003522459.1| PREDICTED: tetratricopeptide repeat protein 27 homolog [Glycine max]

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 115/209 (55%), Positives = 147/209 (70%), Gaps = 4/209 (1%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           M+L+M+NNKR+D  LLERI  ++E + S        T  N  +T+  C  D   +     
Sbjct: 702 MILDMSNNKRVDCELLERITREVEKKLSTSNVPQLVTDDNKPKTDQLCIVDSGSKYQEQV 761

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQVVRSESS--ADMWGLYARWLKNKGDLTMCSEALL 118
           S   SI GRSRE E L+  LGK+LQQ+++S S    ++WGLYA+W +  GDL MCSEALL
Sbjct: 762 SGV-SIAGRSRETEQLLLLLGKVLQQIIKSGSGCGPEIWGLYAKWHRINGDLMMCSEALL 820

Query: 119 KQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQA- 177
           KQVRS QGSD WKDRDRFK+F+ ASLELC+VY+EI SS+GS ++L  AEMHLKNV++QA 
Sbjct: 821 KQVRSLQGSDTWKDRDRFKKFAKASLELCQVYVEIFSSAGSIKQLTTAEMHLKNVIRQAR 880

Query: 178 EGFSDMEEFRDLHACLDELKTKLQSGPVA 206
           + F+D EEFRDL AC DE+K KLQS  +A
Sbjct: 881 QSFTDTEEFRDLQACYDEVKIKLQSNSMA 909

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518832|ref|XP_003528081.1| PREDICTED: uncharacterized protein LOC100782837 [Glycine max]

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 114/205 (55%), Positives = 144/205 (70%), Gaps = 5/205 (2%)

Query: 1   MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
           M+LNM+NNKR+D  LLERI  ++E R S         T N  +T+  C  D   E+    
Sbjct: 606 MILNMSNNKRVDCELLERITKEVEKRLSTSNVPPL-ITDNKPKTDQFCIVDPGSENQEQV 664

Query: 61  SPEESIMGRSRENEHLMEFLGKILQQVVRSESS--ADMWGLYARWLKNKGDLTMCSEALL 118
           S   SI GRSRE E L+  LGK+LQQ++++ S    ++WGLYA+W +  GDL MCSEALL
Sbjct: 665 S-GASITGRSRETEQLLLLLGKVLQQIIKTGSGCGPEIWGLYAKWHRINGDLMMCSEALL 723

Query: 119 KQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQA- 177
           KQVRS QGSD WKDRDRFK+F+  SLELC+VY+E  SS+GS ++L  AEMHLKNV++QA 
Sbjct: 724 KQVRSLQGSDTWKDRDRFKKFAKVSLELCQVYVEFFSSTGSIKQLSTAEMHLKNVIRQAT 783

Query: 178 EGFSDMEEFRDLHACLDELKTKLQS 202
           + F+D EEFRDL AC DE+K KLQS
Sbjct: 784 QSFTDTEEFRDLQACYDEVKIKLQS 808

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468426|ref|XP_004151922.1| PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis sativus]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 142/202 (70%), Gaps = 25/202 (12%)

Query: 2   VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSS 61
           V +MTNNKR+D  LLERI+ ++E           R   N +  ++    DL VE      
Sbjct: 715 VTDMTNNKRVDAELLERIMQEVE-----------RRASNSHSESHHHEADLVVE------ 757

Query: 62  PEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQV 121
                  ++RE +H++E +GK+L Q+VR  + AD+WG+YARW K KGD TMCSEALLKQV
Sbjct: 758 -------KNRETDHMVELIGKVLHQIVRGGTGADIWGIYARWHKIKGDFTMCSEALLKQV 810

Query: 122 RSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAE-GF 180
           RSYQGSDLWKDR++F +F+ ASLEL +VYM ISS++ S+REL+AAEMHLKN +KQA   F
Sbjct: 811 RSYQGSDLWKDREKFLKFAQASLELSRVYMHISSTANSQRELYAAEMHLKNTVKQASVNF 870

Query: 181 SDMEEFRDLHACLDELKTKLQS 202
           SD +E+RDL  CLDE+KT+L+S
Sbjct: 871 SDTKEYRDLEDCLDEVKTRLES 892

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516270|ref|XP_004165170.1| PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 27 homolog, partial [Cucumis sativus]

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 141/202 (69%), Gaps = 25/202 (12%)

Query: 2   VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSS 61
           V +MTNNKR+D  LLERI+ ++E R S   SES     +L                    
Sbjct: 300 VTDMTNNKRVDAELLERIMQEVERRASNSHSESHHHEADL-------------------- 339

Query: 62  PEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQV 121
               ++ + RE +H++E +GK+L Q+VR  + AD+WG+YARW K KGD TMCSEALLKQV
Sbjct: 340 ----VVEKXRETDHMVELIGKVLHQIVRGGTGADIWGIYARWHKIKGDFTMCSEALLKQV 395

Query: 122 RSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAE-GF 180
           RSYQGSDLWKDR++F +F+ ASLEL +VYM ISS++ S+REL+AAEMHLKN +KQA   F
Sbjct: 396 RSYQGSDLWKDREKFLKFAQASLELSRVYMHISSTANSQRELYAAEMHLKNTVKQASVNF 455

Query: 181 SDMEEFRDLHACLDELKTKLQS 202
           SD +E+RDL  CLDE+KT+L+S
Sbjct: 456 SDTKEYRDLEDCLDEVKTRLES 477

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807747|ref|XP_002871757.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317594|gb|EFH48016.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 139/201 (69%), Gaps = 16/201 (7%)

Query: 2   VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSS 61
           +L M+ NKRID VLL+RI+ ++E R S  +S S   T                 S   S+
Sbjct: 696 ILKMSKNKRIDVVLLDRIMTELENRNSACKSSSSIETE---------------ASSDEST 740

Query: 62  PEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQV 121
             +       E +  +E LGKI+QQ+V++ES++++WGLYARW + KGDL +CSEALLKQV
Sbjct: 741 ETKPCTATPAETQRHLELLGKIIQQIVKTESTSEIWGLYARWSRIKGDLMVCSEALLKQV 800

Query: 122 RSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAE-GF 180
           RSYQGS++WKD++RFK F+ ASLELC+VYMEIS S+GS+RELF+AEMHLKN +KQA   F
Sbjct: 801 RSYQGSEVWKDKERFKNFARASLELCRVYMEISVSTGSKRELFSAEMHLKNTIKQATVSF 860

Query: 181 SDMEEFRDLHACLDELKTKLQ 201
            D EE ++L  CL+E++  +Q
Sbjct: 861 LDTEELKELECCLEEVRNVMQ 881

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2167165	899	AT5G17270 [Arabidopsis thalian	0.898	0.206	0.497	1.9e-47
TAIR|locus:2166153	877	AT5G37130 [Arabidopsis thalian	0.603	0.142	0.595	9.4e-43

TAIR|locus:2167165 AT5G17270 [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 1.9e-47, P = 1.9e-47
 Identities = 100/201 (49%), Positives = 137/201 (68%)

Query:     2 VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCXXXXXXXXXXXXCAKDLXXXXXXXXX 61
             +L M+ NKR+D VLL+RI+ ++E R S  +S S               K           
Sbjct:   702 ILKMSKNKRVDVVLLDRIMTELEKRNSACKSSSSSTETEASSDESTETKPCTATPA---- 757

Query:    62 XXXXIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQV 121
                       E +  +E LGK++QQ+V++ES+A++WGLYARW + KGDLT+CSEALLKQV
Sbjct:   758 ----------ETQRQLELLGKVIQQIVKTESTAEIWGLYARWSRIKGDLTVCSEALLKQV 807

Query:   122 RSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAE-GF 180
             RSYQGS++WKD++RFK+F+ ASLELC+VYMEIS+S GS+RELF AEMHLKN +KQA   F
Sbjct:   808 RSYQGSEVWKDKERFKKFARASLELCRVYMEISASIGSKRELFTAEMHLKNTIKQATVSF 867

Query:   181 SDMEEFRDLHACLDELKTKLQ 201
              D EE ++L +CL+E++  +Q
Sbjct:   868 LDSEELKELESCLEEVRNVMQ 888

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2166153 AT5G37130 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.4e-43, Sum P(2) = 9.4e-43
 Identities = 75/126 (59%), Positives = 104/126 (82%)

Query:    77 MEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRF 136
             +E  GKI+QQ+V++ES+ + WGLYARW +  GDLT+CSEALLKQVRSY G ++WKD++RF
Sbjct:   742 IELFGKIIQQIVKTESTFENWGLYARWSRINGDLTICSEALLKQVRSYLGVEMWKDKERF 801

Query:   137 KRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQA-EGFSDMEEFRDLHACLDE 195
             K+F+ ASLELC+VY+EIS+S  S+RELF+AEMHLKN +KQA + F + EE ++L +CL+E
Sbjct:   802 KKFARASLELCRVYIEISASVESKRELFSAEMHLKNTIKQARKSFGETEELKELESCLEE 861

Query:   196 LKTKLQ 201
             ++   Q
Sbjct:   862 VRNVTQ 867

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048046 "apoplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.47
PF13428	44	TPR_14: Tetratricopeptide repeat	92.8
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	85.57
PRK10370	198	formate-dependent nitrite reductase complex subuni	83.31
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	82.78
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	80.58

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.47  E-value=1.4e-13  Score=135.69  Aligned_cols=159  Identities=31%  Similarity=0.384  Sum_probs=127.7

Q ss_pred             ceecCCCccccHHHHHHHHHHHhcccccccccccccccCCCcCCCCcCCCCCcccccCCCccccccccchhhhHHHHHHH
Q 028535            2 VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLG   81 (207)
Q Consensus         2 Vl~ls~~kr~d~~lL~ri~~~~e~~~~~~~~~~~~~~~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~r~~e~l~e~~G   81 (207)
                      .++|..+++.|.+++..|+..+|+..    +.+                           +. +.++..+.   ..|.+|
T Consensus       613 ll~~~~~~~d~~vl~~iv~~~~~~~~----d~s---------------------------~d-e~~~~k~~---~kelmg  657 (777)
T KOG1128|consen  613 LLDLRKKYKDDEVLLIIVRTVLEGMT----DES---------------------------GD-EATGLKGK---LKELLG  657 (777)
T ss_pred             HHHhhhhcccchhhHHHHHHHHhhcc----ccc---------------------------cc-hhhhhhHH---HHHHHH
Confidence            46788889999999999999999986    111                           00 11122222   229999


Q ss_pred             HHHHHHHhccchhhHHH-HHHHHHHHhCC-hhhhHHHHHHHHhhhccCc-cccchhHHHHHHHHHHHHHHHHHHHhcCCC
Q 028535           82 KILQQVVRSESSADMWG-LYARWLKNKGD-LTMCSEALLKQVRSYQGSD-LWKDRDRFKRFSYASLELCKVYMEISSSSG  158 (207)
Q Consensus        82 kil~qiv~S~~~~diWg-LyAryh~~~G~-~~~a~EA~LKqVRslqgS~-w~kD~~~F~kya~Asl~Lc~vY~ei~s~~G  158 (207)
                      ++++|+++++.+..||+ +|+.+...+++ ..+|.++..|++++..++. |.+|.+.|++++++++.||.+|+|+...-+
T Consensus       658 ~~~~qv~~s~~~wrL~a~l~~~~~~ek~~~~eka~~~l~k~~~~~s~~~~w~~d~~~~~~~v~~a~~l~~v~~e~~~~i~  737 (777)
T KOG1128|consen  658 KVLSQVTNSPETWRLYALLYGNGSSEKLDENEKAYRALSKAYKCDTGSNVWEKDITLFKEVVQAALGLAHVAIECSKNIS  737 (777)
T ss_pred             HHHHHHhCchhhhHhHhhhccccchhcccccHHHHhhhhhCccccccccCCccchhHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            99999999744444444 44455555554 4599999999999999995 556999999999999999999999999999


Q ss_pred             cchh-hHHHHHHhHHHHHhhc-CCCCcHhHHHHHHHHHHH
Q 028535          159 SRRE-LFAAEMHLKNVLKQAE-GFSDMEEFRDLHACLDEL  196 (207)
Q Consensus       159 ~~re-L~sA~MHLk~~lKqae-~F~ete~~k~L~acL~Ev  196 (207)
                      +.+| ++++|||||++++++. +|.+++ -.++..+|+++
T Consensus       738 s~~e~~~t~rl~Lk~~~~~~~~~~~d~~-~~~~~~~L~~~  776 (777)
T KOG1128|consen  738 SSQEMLSTVRLNLKGLLSKAKVSFTDSA-TGELERELEDD  776 (777)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhh-hHHHHHHHhhc
Confidence            9999 9999999999999999 999999 89999998875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.80  E-value=0.2  Score=32.14  Aligned_cols=31  Identities=16%  Similarity=0.174  Sum_probs=28.3

Q ss_pred             hhHHHHHHHHHHHhCChhhhHHHHHHHHhhh
Q 028535           94 ADMWGLYARWLKNKGDLTMCSEALLKQVRSY  124 (207)
Q Consensus        94 ~diWgLyAryh~~~G~~~~a~EA~LKqVRsl  124 (207)
                      |++|-.+|+++...|+++.|.+.+.+.++..
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~   31 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALD   31 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            5789999999999999999999999988843

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.07  E-value=0.51  Score=27.50  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=26.1

Q ss_pred             hhHHHHHHHHHHHhCChhhhHHHHHHHHh
Q 028535           94 ADMWGLYARWLKNKGDLTMCSEALLKQVR  122 (207)
Q Consensus        94 ~diWgLyAryh~~~G~~~~a~EA~LKqVR  122 (207)
                      |++|-..+..+...|+++.|++...|.++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=85.57  E-value=3  Score=27.57  Aligned_cols=41  Identities=15%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             HHHHHHHhcc-chhhHHHHHHHHHHHhCChhhhHHHHHHHHh
Q 028535           82 KILQQVVRSE-SSADMWGLYARWLKNKGDLTMCSEALLKQVR  122 (207)
Q Consensus        82 kil~qiv~S~-~~~diWgLyAryh~~~G~~~~a~EA~LKqVR  122 (207)
                      +++++++... ..+++|-.+++-+...|+++.|.+...+.+.
T Consensus        18 ~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen   18 AAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555444 4599999999999999999999977776665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=83.31  E-value=4.3  Score=33.87  Aligned_cols=49  Identities=10%  Similarity=0.203  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHhCChhhhHHHHHHHHh
Q 028535           74 EHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVR  122 (207)
Q Consensus        74 e~l~e~~Gkil~qiv~S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVR  122 (207)
                      +...+++..+-+.+..++..++.|-..++++...|+++.|.++.-+.++
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~  101 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ  101 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3345666666666667777799999999999999999999999998887

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=82.78  E-value=3.2  Score=24.30  Aligned_cols=29  Identities=17%  Similarity=0.187  Sum_probs=25.4

Q ss_pred             hhHHHHHHHHHHHhCChhhhHHHHHHHHh
Q 028535           94 ADMWGLYARWLKNKGDLTMCSEALLKQVR  122 (207)
Q Consensus        94 ~diWgLyAryh~~~G~~~~a~EA~LKqVR  122 (207)
                      +.+|-+.++.+..+|+++.|.+...|.+.
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            46899999999999999999999888765

...

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=80.58  E-value=21  Score=30.18  Aligned_cols=50  Identities=20%  Similarity=0.226  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhh
Q 028535           74 EHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSY  124 (207)
Q Consensus        74 e~l~e~~Gkil~qiv~S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRsl  124 (207)
                      +++.++|-++.+ ....+..+.+|-.+|.++...|+.+.|.+...|.++--
T Consensus       127 ~~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~  176 (280)
T PF13429_consen  127 DEAEELLEKLEE-LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD  176 (280)
T ss_dssp             HHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            334444444442 22223448999999999999999999999999999843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 39/262 (14%), Positives = 71/262 (27%), Gaps = 85/262 (32%)

Query: 2   VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAK-------DLPV 54
           +L  T  K++   L           T+ I  +    T   +   +   K       DLP 
Sbjct: 268 ILLTTRFKQVTDFL-------SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 55  ESVHVSSPEESIMGRS-RENEHLMEF--------LGKILQQVVRSESSADMWGLYAR--- 102
           E +  +    SI+  S R+     +         L  I++  +     A+   ++ R   
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 103 ---------------WLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELC 147
                          W             ++ ++  Y  S + K        S  S+   
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKS---DVMVVVNKLHKY--SLVEKQPKES-TISIPSI--- 431

Query: 148 KVYMEISSSSGSRREL------------------FAAEM-----------HLKNVLKQAE 178
             Y+E+     +   L                                  HLKN ++  E
Sbjct: 432 --YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN-IEHPE 488

Query: 179 GFSDMEEFRDLHACLDELKTKL 200
               M  FR +      L+ K+
Sbjct: 489 ---RMTLFRMVFLDFRFLEQKI 507

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.2
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.48
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	94.03
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	93.52
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	91.12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	88.89
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	87.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	87.31
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	86.89
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	80.93
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	80.35

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.20  E-value=0.044  Score=37.41  Aligned_cols=95  Identities=13%  Similarity=0.020  Sum_probs=71.8

Q ss_pred             ccchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhhccCccccchhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 028535           90 SESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMH  169 (207)
Q Consensus        90 S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRslqgS~w~kD~~~F~kya~Asl~Lc~vY~ei~s~~G~~reL~sA~MH  169 (207)
                      .+..+.+|-.++..+...|+++.|.+...+.++--.            .++.+-..|..+|...       .+...|..+
T Consensus        15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la~~~~~~-------g~~~~A~~~   75 (115)
T 2kat_A           15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP------------TYSVAWKWLGKTLQGQ-------GDRAGARQA   75 (115)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHHH-------TCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------------CcHHHHHHHHHHHHHc-------CCHHHHHHH
Confidence            344589999999999999999999999999887421            1234556677777762       345578889


Q ss_pred             hHHHHHhhcCCCCcHhHHHHHHHHHHHHHhhccC
Q 028535          170 LKNVLKQAEGFSDMEEFRDLHACLDELKTKLQSG  203 (207)
Q Consensus       170 Lk~~lKqae~F~ete~~k~L~acL~Ev~~~~~s~  203 (207)
                      ++..++......+....+++...|..+.......
T Consensus        76 ~~~al~~~~~~~~~~~~~~l~~~l~~l~~~~~~~  109 (115)
T 2kat_A           76 WESGLAAAQSRGDQQVVKELQVFLRRLAREDALE  109 (115)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHhccccCcc
Confidence            9988888766677778888888888877655443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.48  E-value=0.18  Score=34.41  Aligned_cols=88  Identities=10%  Similarity=0.006  Sum_probs=67.1

Q ss_pred             cchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhhccCccccchhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHh
Q 028535           91 ESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHL  170 (207)
Q Consensus        91 ~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRslqgS~w~kD~~~F~kya~Asl~Lc~vY~ei~s~~G~~reL~sA~MHL  170 (207)
                      +..+++|-.++..+...|+++.|.+.+.+.++---        +    +..+-..|..+|...       .+...|.-.+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~----~~~a~~~lg~~~~~~-------g~~~~A~~~~   64 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP--------D----YVGTYYHLGKLYERL-------DRTDDAIDTY   64 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------T----CTHHHHHHHHHHHHT-------TCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------C----cHHHHHHHHHHHHHc-------CCHHHHHHHH
Confidence            34588999999999999999999999999887321        1    233555677777762       3455788899


Q ss_pred             HHHHHhhcCCCCcHhHHHHHHHHHHHH
Q 028535          171 KNVLKQAEGFSDMEEFRDLHACLDELK  197 (207)
Q Consensus       171 k~~lKqae~F~ete~~k~L~acL~Ev~  197 (207)
                      +..++.+....+....++|+..|.+..
T Consensus        65 ~~al~l~~~~~~~~~~~~l~~~l~~~~   91 (100)
T 3ma5_A           65 AQGIEVAREEGTQKDLSELQDAKLKAE   91 (100)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhcCCchhHHHHHHHHHHHcc
Confidence            999988888888888888888887643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=94.03  E-value=0.87  Score=30.61  Aligned_cols=109  Identities=12%  Similarity=0.081  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhhccCccccchhHHHHHHHHHHHHHHHHHHH
Q 028535           74 EHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEI  153 (207)
Q Consensus        74 e~l~e~~Gkil~qiv~S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRslqgS~w~kD~~~F~kya~Asl~Lc~vY~ei  153 (207)
                      +.-.+.+.++++.--++.-.++.|-..+.-+...|+++.|.+...+.++....+.+         ...+-..++.+|+..
T Consensus        19 ~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------~~~~~~~la~~~~~~   89 (129)
T 2xev_A           19 DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---------AAGGLLKLGLSQYGE   89 (129)
T ss_dssp             HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---------cHHHHHHHHHHHHHc
Confidence            33444444444432222222389999999999999999999999998875433321         345566777788762


Q ss_pred             hcCCCcchhhHHHHHHhHHHHHhhcCCCCcHhHHHHHHHHHHHHHhhc
Q 028535          154 SSSSGSRRELFAAEMHLKNVLKQAEGFSDMEEFRDLHACLDELKTKLQ  201 (207)
Q Consensus       154 ~s~~G~~reL~sA~MHLk~~lKqae~F~ete~~k~L~acL~Ev~~~~~  201 (207)
                             .+...|.-+++.+++.   |++.+.......-|.+++..++
T Consensus        90 -------g~~~~A~~~~~~~~~~---~p~~~~~~~a~~~l~~l~~~~~  127 (129)
T 2xev_A           90 -------GKNTEAQQTLQQVATQ---YPGSDAARVAQERLQSIRLGQQ  127 (129)
T ss_dssp             -------TCHHHHHHHHHHHHHH---STTSHHHHHHHHHHHHHC----
T ss_pred             -------CCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhhhh
Confidence                   3455788888877664   6777777777777777766554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=93.52  E-value=1.2  Score=30.41  Aligned_cols=92  Identities=11%  Similarity=0.056  Sum_probs=66.1

Q ss_pred             ccchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhhccCccccchhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 028535           90 SESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMH  169 (207)
Q Consensus        90 S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRslqgS~w~kD~~~F~kya~Asl~Lc~vY~ei~s~~G~~reL~sA~MH  169 (207)
                      .+..+++|-..+.-+..+|+++.|.+...+.++--        ..    +..+-..++.+|+..       .+...|.-+
T Consensus        34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~----~~~~~~~lg~~~~~~-------~~~~~A~~~   94 (126)
T 3upv_A           34 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------PN----FVRAYIRKATAQIAV-------KEYASALET   94 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TT----CHHHHHHHHHHHHHT-------TCHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CC----cHHHHHHHHHHHHHH-------hCHHHHHHH
Confidence            44558999999999999999999999999988742        11    234556677777762       345578888


Q ss_pred             hHHHHHhhcCCCCcHhHHHHHHHHHHHHHhh
Q 028535          170 LKNVLKQAEGFSDMEEFRDLHACLDELKTKL  200 (207)
Q Consensus       170 Lk~~lKqae~F~ete~~k~L~acL~Ev~~~~  200 (207)
                      ++..++...++.+.+....+...|..+...+
T Consensus        95 ~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           95 LDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            8888887755555555666666666665544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=91.12  E-value=1.8  Score=31.53  Aligned_cols=91  Identities=11%  Similarity=0.027  Sum_probs=59.4

Q ss_pred             ccchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhhccCccccchhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 028535           90 SESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMH  169 (207)
Q Consensus        90 S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRslqgS~w~kD~~~F~kya~Asl~Lc~vY~ei~s~~G~~reL~sA~MH  169 (207)
                      .+..++.|-.++.-+...|+++.|.++..+.++--..            +..+-..|..+|+..       .+...|.-+
T Consensus        51 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------------~~~~~~~lg~~~~~~-------g~~~~A~~~  111 (148)
T 2vgx_A           51 DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX------------EPRFPFHAAECLLQX-------GELAEAESG  111 (148)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CTHHHHHHHHHHHHT-------TCHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------------CchHHHHHHHHHHHc-------CCHHHHHHH
Confidence            4445899999999999999999999999998873211            123445677777762       344578888


Q ss_pred             hHHHHHhhcCCCC-cHhHHHHHHHHHHHHHh
Q 028535          170 LKNVLKQAEGFSD-MEEFRDLHACLDELKTK  199 (207)
Q Consensus       170 Lk~~lKqae~F~e-te~~k~L~acL~Ev~~~  199 (207)
                      ++..++.....++ .+.....+.+|+.++..
T Consensus       112 ~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~  142 (148)
T 2vgx_A          112 LFLAQELIANXPEFXELSTRVSSMLEAIKLK  142 (148)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHCcCCCcchHHHHHHHHHHHHHHhH
Confidence            8888877642222 22223555566655544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=88.89  E-value=4.9  Score=28.71  Aligned_cols=92  Identities=10%  Similarity=-0.022  Sum_probs=64.6

Q ss_pred             ccchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhhccCccccchhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 028535           90 SESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMH  169 (207)
Q Consensus        90 S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRslqgS~w~kD~~~F~kya~Asl~Lc~vY~ei~s~~G~~reL~sA~MH  169 (207)
                      .+..+.+|-.++.-+..+|+++.|.+...+.++--..            ++.+-..|+.+|+..       .+...|.-+
T Consensus        41 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~-------g~~~~A~~~  101 (164)
T 3sz7_A           41 APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK------------YSKAWSRLGLARFDM-------ADYKGAKEA  101 (164)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHT-------TCHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHc-------cCHHHHHHH
Confidence            4445899999999999999999999999998874221            245556677778762       345578888


Q ss_pred             hHHHHHhhcCCCCcHhHHHHHHHHHHHHHhh
Q 028535          170 LKNVLKQAEGFSDMEEFRDLHACLDELKTKL  200 (207)
Q Consensus       170 Lk~~lKqae~F~ete~~k~L~acL~Ev~~~~  200 (207)
                      ++..++..-.+.+.-....+..+...+....
T Consensus       102 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A          102 YEKGIEAEGNGGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             HHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence            8888887766555333445555555554443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=87.79  E-value=6.5  Score=28.78  Aligned_cols=29  Identities=17%  Similarity=0.108  Sum_probs=15.6

Q ss_pred             hhHHHHHHHHHHHhCChhhhHHHHHHHHh
Q 028535           94 ADMWGLYARWLKNKGDLTMCSEALLKQVR  122 (207)
Q Consensus        94 ~diWgLyAryh~~~G~~~~a~EA~LKqVR  122 (207)
                      +.+|..++..+...|+++.|.+...+.+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  167 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIK  167 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            45555555555555555555555555444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=87.31  E-value=6.1  Score=29.68  Aligned_cols=86  Identities=9%  Similarity=0.019  Sum_probs=60.9

Q ss_pred             hccchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhhccCccccchhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 028535           89 RSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEM  168 (207)
Q Consensus        89 ~S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRslqgS~w~kD~~~F~kya~Asl~Lc~vY~ei~s~~G~~reL~sA~M  168 (207)
                      ..+..++.|-.++.-+..+|+++.|.++..|.++---.            ++.+-..|..+|+..       .+...|.-
T Consensus        65 ~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~------------~~~~~~~lg~~~~~l-------g~~~eA~~  125 (151)
T 3gyz_A           65 YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN------------DYTPVFHTGQCQLRL-------KAPLKAKE  125 (151)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS------------CCHHHHHHHHHHHHT-------TCHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC------------CcHHHHHHHHHHHHc-------CCHHHHHH
Confidence            35555999999999999999999999999999983221            124555677778762       33457888


Q ss_pred             HhHHHHHhhcCCCCcHhHHHHHHHHHHH
Q 028535          169 HLKNVLKQAEGFSDMEEFRDLHACLDEL  196 (207)
Q Consensus       169 HLk~~lKqae~F~ete~~k~L~acL~Ev  196 (207)
                      +++.+++..   ++.+.-++-+.+|+.+
T Consensus       126 ~~~~al~l~---~~~~~~~~A~~ll~~l  150 (151)
T 3gyz_A          126 CFELVIQHS---NDEKLKIKAQSYLDAI  150 (151)
T ss_dssp             HHHHHHHHC---CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC---CCHHHHHHHHHHHHhh
Confidence            888887765   4555444555555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=86.89  E-value=3.1  Score=26.42  Aligned_cols=85  Identities=9%  Similarity=0.049  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhhccCccccchhHHHHHHHHHHHHHHHHHHH
Q 028535           74 EHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEI  153 (207)
Q Consensus        74 e~l~e~~Gkil~qiv~S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRslqgS~w~kD~~~F~kya~Asl~Lc~vY~ei  153 (207)
                      +.-...+.++++.   .+..+++|-.+|..+...|+++.|.+...+.++....          .....+-..|+.+|+..
T Consensus        23 ~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           23 TESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----------EYNKDVWAAKADALRYI   89 (112)
T ss_dssp             HHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----------TTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----------cchHHHHHHHHHHHHHH
Confidence            3444445454442   3344899999999999999999999999888874221          01224455666777652


Q ss_pred             hcCCCcchhhHHHHHHhHHHHHhh
Q 028535          154 SSSSGSRRELFAAEMHLKNVLKQA  177 (207)
Q Consensus       154 ~s~~G~~reL~sA~MHLk~~lKqa  177 (207)
                      .      .+...|.-+++.+++..
T Consensus        90 ~------~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           90 E------GKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             S------SCSHHHHHHHHHHGGGC
T ss_pred             h------CCHHHHHHHHHHHhhcc
Confidence            0      23346777777776653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=80.93  E-value=12  Score=26.22  Aligned_cols=92  Identities=9%  Similarity=-0.047  Sum_probs=61.3

Q ss_pred             hccchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhhccCccccchhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 028535           89 RSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEM  168 (207)
Q Consensus        89 ~S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRslqgS~w~kD~~~F~kya~Asl~Lc~vY~ei~s~~G~~reL~sA~M  168 (207)
                      ..+..+++|-.++.-+...|+++.|.+...+.++--..            ...+-..|..+|+..       .+...|.-
T Consensus        47 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~-------g~~~~A~~  107 (142)
T 2xcb_A           47 LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN------------EPRFPFHAAECHLQL-------GDLDGAES  107 (142)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CTHHHHHHHHHHHHT-------TCHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------------CcHHHHHHHHHHHHc-------CCHHHHHH
Confidence            34455899999999999999999999999998874221            112335566677752       34457888


Q ss_pred             HhHHHHHhhcCCCC-cHhHHHHHHHHHHHHHh
Q 028535          169 HLKNVLKQAEGFSD-MEEFRDLHACLDELKTK  199 (207)
Q Consensus       169 HLk~~lKqae~F~e-te~~k~L~acL~Ev~~~  199 (207)
                      +++..++..-..++ .+..+.....|+.+++.
T Consensus       108 ~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~  139 (142)
T 2xcb_A          108 GFYSARALAAAQPAHEALAARAGAMLEAVTAR  139 (142)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence            88888877643222 23333566666666554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=80.35  E-value=11  Score=27.16  Aligned_cols=69  Identities=9%  Similarity=0.065  Sum_probs=48.9

Q ss_pred             ccchhhHHHHHHHHHHHhCChhhhHHHHHHHHhhhccCccccchhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 028535           90 SESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMH  169 (207)
Q Consensus        90 S~~~~diWgLyAryh~~~G~~~~a~EA~LKqVRslqgS~w~kD~~~F~kya~Asl~Lc~vY~ei~s~~G~~reL~sA~MH  169 (207)
                      .+..++.|-.++.-+...|+++.|.+...+.++-        ++.    +..+-..|+.+|+..-.    ..+  +|+-+
T Consensus        61 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~----~~~~~~~la~~~~~~~~----~~~--aa~~~  122 (150)
T 4ga2_A           61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--------NPT----QKDLVLKIAELLCKNDV----TDG--RAKYW  122 (150)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT----CHHHHHHHHHHHHHHCS----SSS--HHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCC----CHHHHHHHHHHHHHcCC----hHH--HHHHH
Confidence            4455999999999999999999999999988873        221    23566778888886321    122  56666


Q ss_pred             hHHHHHh
Q 028535          170 LKNVLKQ  176 (207)
Q Consensus       170 Lk~~lKq  176 (207)
                      ++..++.
T Consensus       123 ~~~al~l  129 (150)
T 4ga2_A          123 VERAAKL  129 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00