Citrus Sinensis ID: 028558

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHccccccccccccccccccccccEEEcccccccccEEEcccccHHHHHHHHHHcccccccEEcccccEEEEEEHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEcccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEcccccccEEEEEccccccccccccccccccEEEEcccccccEEEEEccccccccHHccHHHHHcccccccccccccccEEEHHccccccccEEEcccccHHHHHHHHHHccccccEEEcccccEEEEEEHHHHHHHHcccccccccccccccccHHcccHHHHHHHHHHHHcccHHHHcccccEEEcccccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgrtsfalqlpclllsrpgcrvfSVLATSSDRVSALRRSSAvfasgtltansaapssgvytvgdfmttkeelhvvkptttVDEALEILVEKRitgfpvidddwklvglvsdydllaldsisgsgradnsmfpevdsTWKTFNEVQKLLSKtngkmvgdlmtpapvvVRETTNLEDAARSSHSFF
Flexible Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVfasgtltansaapssgvYTVGDFMTTKEElhvvkptttvDEALEILVEKritgfpvidddWKLVGLVSDYDLLALDSisgsgradnSMFPEVDSTWKTFNEVQKLLsktngkmvgdlMTPAPVVVRETTnledaarsshsff
Low Complexity Region (SEG)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF
Disordered region (IsUnstruct)
**************************TSFALQLPCLLLSRPGCRVFSVLATSSDRVSAL****AVFASGTL********SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS*********F*EVDSTWKTFNEVQKLLSKTNGKMVGDLMT***VV******************
Disordered Region (DISOPRED)
*******HSISV******************LQLPCLLLSRP****************************************VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF
Disordered Region (DISEMBL)
MDSIVLPHSISVARLR*********RTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE**********
Disordered Region (DISPRO)
**SIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS***************************GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
O23193	236	CBS domain-containing pro	yes	no	0.666	0.584	0.821	8e-63
Q9C5D0	238	CBS domain-containing pro	no	no	0.685	0.596	0.660	2e-52
P42851	485	Inosine-5'-monophosphate	yes	no	0.328	0.140	0.408	6e-05
O58045	486	Inosine-5'-monophosphate	yes	no	0.391	0.166	0.357	8e-05
O67820	490	Inosine-5'-monophosphate	yes	no	0.188	0.079	0.475	0.0001

>sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2

 Score =  239 bits (611), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 115/140 (82%), Positives = 127/140 (90%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
           S++  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPV
Sbjct: 54  SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPV 113

Query: 122 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGD 181
           ID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGD
Sbjct: 114 IDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGD 173

Query: 182 LMTPAPVVVRETTNLEDAAR 201
           LMTPAP+VV E TNLEDAA+
Sbjct: 174 LMTPAPLVVEEKTNLEDAAK 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5D0|CBSX2_ARATH CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/153 (66%), Positives = 125/153 (81%), Gaps = 11/153 (7%)

Query: 60  RRSSAVFASGTLTANSAAPSS-----------GVYTVGDFMTTKEELHVVKPTTTVDEAL 108
           RRSS    S T++A  AAP+S           G YTVGDFMT ++ LHVVKP+T+VD+AL
Sbjct: 43  RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDAL 102

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 168
           E+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDSTWKTFNE+Q
Sbjct: 103 ELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQ 162

Query: 169 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
           KL+SKT GK+VGDLMTP+P+VVR++TNLEDAAR
Sbjct: 163 KLISKTYGKVVGDLMTPSPLVVRDSTNLEDAAR 195

Arabidopsis thaliana (taxid: 3702)

>sp|P42851|IMDH_PYRFU Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1

 Score = 47.4 bits (111), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G  TV + MT   E+  V  +  V+EAL+I++E RI   PV+++D KL
Sbjct: 137 GIITKKDIAAREG-RTVKELMT--REVITVPESVDVEEALKIMMENRIDRLPVVNEDGKL 193

Query: 129 VGLVSDYDLLA 139
           VGL++  DL+A
Sbjct: 194 VGLITMSDLVA 204

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O58045|IMDH_PYRHO Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=guaB PE=1 SV=1

 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G   V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KL
Sbjct: 137 GIITKKDIAAREG-KLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193

Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
           VGL++  DL+A      + R +N 
Sbjct: 194 VGLITMSDLVARKKYKNAVRDENG 217

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O67820|IMDH_AQUAE Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=guaB PE=3 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 32/40 (80%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           VKP T V EAL+I+ + +I+G PV+D++ KL+G++++ DL
Sbjct: 103 VKPDTRVKEALDIMAKYKISGVPVVDEERKLIGILTNRDL 142

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
225438783	246	PREDICTED: CBS domain-containing protein	0.971	0.817	0.705	2e-73
317106695	236	JHL03K20.5 [Jatropha curcas]	0.917	0.805	0.745	1e-72
255587643	239	conserved hypothetical protein [Ricinus	0.811	0.702	0.793	5e-68
147802944	288	hypothetical protein VITISV_021555 [Viti	0.971	0.697	0.585	9e-67
224081731	208	predicted protein [Populus trichocarpa]	0.782	0.778	0.744	5e-64
449443418	235	PREDICTED: CBS domain-containing protein	0.864	0.761	0.654	5e-62
449525190	235	PREDICTED: CBS domain-containing protein	0.864	0.761	0.654	7e-62
356541776	228	PREDICTED: CBS domain-containing protein	0.642	0.583	0.837	3e-61
15234564	236	cystathionine beta-synthase domain-conta	0.666	0.584	0.821	4e-61
357482805	224	Inosine-5'-monophosphate dehydrogenase [	0.671	0.620	0.801	7e-61

>gi|225438783|ref|XP_002283079.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Vitis vinifera]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 144/204 (70%), Positives = 166/204 (81%), Gaps = 3/204 (1%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+LP +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILLPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            +RRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GIRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGK 177
           GFPVIDDDWKLVGLVSDYDLLALDSISG G  D  MFPEVDSTWKTFNE+QKLLSKTNGK
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISGGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGK 180

Query: 178 MVGDLMTPAPVVVRETTNLEDAAR 201
           +VGDLMTPAPVVVRETTNLEDAAR
Sbjct: 181 VVGDLMTPAPVVVRETTNLEDAAR 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106695|dbj|BAJ53196.1| JHL03K20.5 [Jatropha curcas]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 163/204 (79%), Gaps = 14/204 (6%)

Query: 1   MDSIV---LPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVS 57
           MDSI+   L H + + RLRA     TS   SFA QLPCLL SRPG R+  + A     +S
Sbjct: 1   MDSILHQELLH-LPITRLRATA---TSPIVSFAQQLPCLLSSRPGRRLLPLSA-----IS 51

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
             RRSSA+ ASG   A+S  P SGVYTVGDFMT KE+L VVKPTTTVDEAL+ LVE RIT
Sbjct: 52  HPRRSSAIAASGAFVASS--PKSGVYTVGDFMTRKEDLQVVKPTTTVDEALQTLVEHRIT 109

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGK 177
           GFPVIDDDWKLVGLVSDYDLLALDSISG GR DNSMFPEVDSTWKTFNEVQKLLSKTNGK
Sbjct: 110 GFPVIDDDWKLVGLVSDYDLLALDSISGGGRTDNSMFPEVDSTWKTFNEVQKLLSKTNGK 169

Query: 178 MVGDLMTPAPVVVRETTNLEDAAR 201
           +VGDLMTPAPVVVRETTNLEDAAR
Sbjct: 170 LVGDLMTPAPVVVRETTNLEDAAR 193

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587643|ref|XP_002534340.1| conserved hypothetical protein [Ricinus communis] gi|223525462|gb|EEF28042.1| conserved hypothetical protein [Ricinus communis]

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 138/174 (79%), Positives = 145/174 (83%), Gaps = 6/174 (3%)

Query: 28  SFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87
           SFA QLPCLL S    R    L+     +S  RRSS + A+GTL ANS  P SGVYTVGD
Sbjct: 29  SFAHQLPCLLSSATVSRRLFHLSV----ISWPRRSSTISATGTLMANS--PKSGVYTVGD 82

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 147
           FMT KE+L VVKPTTTVDEAL+ LVE RITGFPVIDDDWKLVGLVSDYDLLALDSISG G
Sbjct: 83  FMTRKEDLCVVKPTTTVDEALQTLVEHRITGFPVIDDDWKLVGLVSDYDLLALDSISGGG 142

Query: 148 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
           R DNSMFPEVDSTWKTFNEVQKLLSKTNGK+VGDLMTPAPVVVRETTNLEDAAR
Sbjct: 143 RTDNSMFPEVDSTWKTFNEVQKLLSKTNGKLVGDLMTPAPVVVRETTNLEDAAR 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802944|emb|CAN64036.1| hypothetical protein VITISV_021555 [Vitis vinifera]

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 165/246 (67%), Gaps = 45/246 (18%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+ P +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILPPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            LRRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GLRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSI---------------------------------- 143
           GFPVIDDDWKLVGLVSDYDLLALDSI                                  
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISELPQLKHVPEDISGKSLVLHGSLERQMKSLFLT 180

Query: 144 --------SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 195
                   SG G  D  MFPEVDSTWKTFNE+QKLLSKTNGK+VGDLMTPAPVVVRETTN
Sbjct: 181 AVDVLIFGSGGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGKVVGDLMTPAPVVVRETTN 240

Query: 196 LEDAAR 201
           LEDAAR
Sbjct: 241 LEDAAR 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081731|ref|XP_002306482.1| predicted protein [Populus trichocarpa] gi|222855931|gb|EEE93478.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 128/172 (74%), Positives = 143/172 (83%), Gaps = 10/172 (5%)

Query: 33  LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFA---SGTLTANSAAPSSGVYTVGDFM 89
           +PCLL S PG ++ S+       +S  RRS ++ A   SGTL ANS  P SGVYTVGDFM
Sbjct: 1   MPCLLFSTPGRKLVSL-----SSISWPRRSPSLIAAASSGTLMANS--PKSGVYTVGDFM 53

Query: 90  TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA 149
           T KE+LHVVKPTTTV+EALE LVE+RITGFPVIDDDWKLVGLVSDYDLLALDSISG GR 
Sbjct: 54  TRKEDLHVVKPTTTVNEALETLVERRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGRT 113

Query: 150 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
           + +MFPEVDSTWKTFNEVQ LL+KTNGK+VGDLMTPAPVVVRETTNLED+ R
Sbjct: 114 ETNMFPEVDSTWKTFNEVQMLLNKTNGKVVGDLMTPAPVVVRETTNLEDSVR 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443418|ref|XP_004139474.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 129/197 (65%), Positives = 149/197 (75%), Gaps = 18/197 (9%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD
Sbjct: 56  IAASGTLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDD 115

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT 184
           +WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WKTFNEVQ+LLSKTNGK+VGDLMT
Sbjct: 116 NWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQRLLSKTNGKVVGDLMT 175

Query: 185 PAPVVVRETTNLEDAAR 201
            AP+VVRE T+LED AR
Sbjct: 176 TAPLVVREITDLEDVAR 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525190|ref|XP_004169601.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 129/197 (65%), Positives = 149/197 (75%), Gaps = 18/197 (9%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD
Sbjct: 56  IAASGTLMANSLPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDD 115

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT 184
           +WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WKTFNEVQ+LLSKTNGK+VGDLMT
Sbjct: 116 NWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQRLLSKTNGKVVGDLMT 175

Query: 185 PAPVVVRETTNLEDAAR 201
            AP+VVRE T+LED AR
Sbjct: 176 TAPLVVREITDLEDVAR 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541776|ref|XP_003539349.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Glycine max] gi|255632210|gb|ACU16463.1| unknown [Glycine max]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/135 (83%), Positives = 125/135 (92%)

Query: 67  ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           A+ TLTAN  +P SG+YTVGDFMT KE+LHVVKPTT+VDEALEILVE RITGFPVIDD+W
Sbjct: 51  AANTLTANDVSPRSGLYTVGDFMTKKEDLHVVKPTTSVDEALEILVENRITGFPVIDDNW 110

Query: 127 KLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA 186
           KLVG+VSDYDLLALDSISG G  DN+MFPEVDSTWKTFNEVQKLLSKTNGK++G+LMT A
Sbjct: 111 KLVGVVSDYDLLALDSISGHGLKDNNMFPEVDSTWKTFNEVQKLLSKTNGKLIGELMTTA 170

Query: 187 PVVVRETTNLEDAAR 201
           P+VVRETTNLEDAAR
Sbjct: 171 PMVVRETTNLEDAAR 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234564|ref|NP_195409.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] gi|75219197|sp|O23193.2|CBSX1_ARATH RecName: Full=CBS domain-containing protein CBSX1, chloroplastic; AltName: Full=CBS domain-containing protein 2; Short=AtCDCP2; AltName: Full=Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2; Short=AtLEJ2; Flags: Precursor gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis thaliana] gi|7270640|emb|CAB80357.1| putative protein [Arabidopsis thaliana] gi|21537376|gb|AAM61717.1| unknown [Arabidopsis thaliana] gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis thaliana] gi|28827758|gb|AAO50723.1| unknown protein [Arabidopsis thaliana] gi|332661316|gb|AEE86716.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/140 (82%), Positives = 127/140 (90%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
           S++  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPV
Sbjct: 54  SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPV 113

Query: 122 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGD 181
           ID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGD
Sbjct: 114 IDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGD 173

Query: 182 LMTPAPVVVRETTNLEDAAR 201
           LMTPAP+VV E TNLEDAA+
Sbjct: 174 LMTPAPLVVEEKTNLEDAAK 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482805|ref|XP_003611689.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula] gi|355513024|gb|AES94647.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula]

 Score =  239 bits (609), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 113/141 (80%), Positives = 128/141 (90%)

Query: 61  RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
           R S +FA+ TLTANS  P +GVYTVGDFMT K+ELH VKPTTTVDEAL+ LVE RITGFP
Sbjct: 41  RGSPLFAANTLTANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHRITGFP 100

Query: 121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVG 180
           VIDD+WKLVG+VSDYDLLALDSISG G+ DNS+FP+VDSTWKTFNEVQ+LLSKTNGK++G
Sbjct: 101 VIDDNWKLVGVVSDYDLLALDSISGQGQTDNSLFPDVDSTWKTFNEVQRLLSKTNGKVIG 160

Query: 181 DLMTPAPVVVRETTNLEDAAR 201
           +LMT AP+VVRETTNLEDAAR
Sbjct: 161 ELMTTAPMVVRETTNLEDAAR 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2114970	236	LEJ2 "AT4G36910" [Arabidopsis	0.932	0.817	0.656	3.9e-60
TAIR|locus:2124276	238	LEJ1 "AT4G34120" [Arabidopsis	0.753	0.655	0.629	6.7e-49
UNIPROTKB|Q3AFN9	210	acuB "Acetoin utilization prot	0.241	0.238	0.547	0.00017
TIGR_CMR|CHY_0173	210	CHY_0173 "acetoin utilization	0.241	0.238	0.547	0.00017
ZFIN|ZDB-GENE-060421-6938	342	zgc:136850 "zgc:136850" [Danio	0.536	0.324	0.279	0.00041
TIGR_CMR|CJE_1201	485	CJE_1201 "inosine-5'-monophosp	0.362	0.154	0.382	0.00055

TAIR|locus:2114970 LEJ2 "AT4G36910" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 132/201 (65%), Positives = 152/201 (75%)

Query:     1 MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALR 60
             MD+++    +S   LRA     +S  +S  L LP  L  +P C  F+   +   +     
Sbjct:     1 MDAVLYSVPLSFTPLRA-----SSSPSSPYLLLPRFLSVQP-CHKFTFSRSFPSKSRIPS 54

Query:    61 RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
              SSA  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFP
Sbjct:    55 ASSA--AGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFP 112

Query:   121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVG 180
             VID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VG
Sbjct:   113 VIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVG 172

Query:   181 DLMTPAPVVVRETTNLEDAAR 201
             DLMTPAP+VV E TNLEDAA+
Sbjct:   173 DLMTPAPLVVEEKTNLEDAAK 193

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

TAIR|locus:2124276 LEJ1 "AT4G34120" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 102/162 (62%), Positives = 133/162 (82%)

Query:    46 FSVLATSSDRVSALRRSS----AVFAS-GTLTANSAAPS-SGVYTVGDFMTTKEELHVVK 99
             FS+L  S+ R S+    S    A FA+  ++  N++ P+ +G YTVGDFMT ++ LHVVK
Sbjct:    34 FSLLPLSNRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVK 93

Query:   100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159
             P+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDS
Sbjct:    94 PSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS 153

Query:   160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
             TWKTFNE+QKL+SKT GK+VGDLMTP+P+VVR++TNLEDAAR
Sbjct:   154 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAAR 195

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q3AFN9 acuB "Acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CHY_0173 CHY_0173 "acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

ZFIN|ZDB-GENE-060421-6938 zgc:136850 "zgc:136850" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 0.00041, P = 0.00041
 Identities = 31/111 (27%), Positives = 51/111 (45%)

Query:    91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 150
             T + +  VK T TV +AL I VE+R++  PV+++  K+V L S +D++ L +       +
Sbjct:   208 TFKSIATVKETETVYDALTIFVERRVSALPVVNEQGKVVALYSRFDVINLAAQKTYNHLN 267

Query:   151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
              +M   +   W     V K       + V D +  A V      + ED  R
Sbjct:   268 MTMAEAIQGRWCCIEGVLKCYPHETLETVIDRIAEAEVHRLVLVDTEDVVR 318

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1201 CJE_1201 "inosine-5'-monophosphate dehydrogenase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 112 (44.5 bits), Expect = 0.00055, P = 0.00055
 Identities = 31/81 (38%), Positives = 49/81 (60%)

Query:    98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM--FP 155
             V P  +V EALEI+ E RI+G PV+D+D KL+G++++ DL   +S   S   +N M   P
Sbjct:    99 VSPKASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDL-RFES-DFSNLVENVMTKMP 156

Query:   156 EVDSTWK-TFNEVQKLLSKTN 175
              + +    T ++ +K+ S TN
Sbjct:   157 LITAPKGCTLDDAEKIFS-TN 176


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      207       207   0.00099  111 3  11 22  0.37    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.18u 0.11s 18.29t   Elapsed:  00:00:01
  Total cpu time:  18.18u 0.11s 18.29t   Elapsed:  00:00:01
  Start:  Sat May 11 01:35:31 2013   End:  Sat May 11 01:35:32 2013

GO:0003938 "IMP dehydrogenase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23193	CBSX1_ARATH	No assigned EC number	0.8214	0.6666	0.5847	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019540001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (213 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023053001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (430 aa)	•						•		0.707
	GSVIVG00036526001	RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa)	•								0.556
	GSVIVG00000640001	RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)	•								0.553
	GSVIVG00025551001	RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)							•		0.474

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	5e-16
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	1e-14
pfam00571	57	pfam00571, CBS, CBS domain	3e-13
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	4e-13
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	7e-12
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-11
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-10
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	3e-10
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	5e-10
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	8e-10
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-09
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-09
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	5e-09
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	5e-09
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	6e-09
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	6e-09
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	7e-09
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	3e-08
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	5e-08
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	6e-08
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	9e-08
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	9e-08
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	9e-08
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	9e-08
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	2e-07
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	3e-07
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	3e-07
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	3e-07
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	4e-07
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	4e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	5e-07
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	5e-07
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	7e-07
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-06
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	1e-06
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-06
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-06
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	2e-06
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	2e-06
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	3e-06
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	3e-06
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	4e-06
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	4e-06
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	4e-06
cd04598	119	cd04598, CBS_pair_GGDEF_assoc, This cd contains tw	6e-06
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	7e-06
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	9e-06
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	1e-05
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	1e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	1e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	4e-05
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	4e-05
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	4e-05
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	5e-05
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	5e-05
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	8e-05
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	8e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	9e-05
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	1e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	1e-04
cd04608	124	cd04608, CBS_pair_PALP_assoc, This cd contains two	1e-04
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	1e-04
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	1e-04
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	1e-04
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	1e-04
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	2e-04
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	2e-04
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	2e-04
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-04
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-04
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	2e-04
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	2e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	3e-04
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	3e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	4e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	5e-04
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	5e-04
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	6e-04
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	7e-04
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	7e-04
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	0.001
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	0.001
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	0.001
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	0.001
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	0.002
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.002
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	0.002
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	0.002
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	0.003
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	0.003
cd04597	113	cd04597, CBS_pair_DRTGG_assoc2, This cd contains t	0.004
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	0.004

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 71.1 bits (175), Expect = 5e-16
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P T+V EA  ++++  I+G PV+DDD +LVG+VS+ DLL    + G+ R        
Sbjct: 6   TVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAEL-GTERRRARWLDL 64

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                    E+     +++G+ V D+MT   V V E T L + A 
Sbjct: 65  ----LAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAE 105

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 67.4 bits (165), Expect = 1e-14
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 11/113 (9%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFP 155
            VK   T+ + +EIL+  +I+G PV+D++ ++VG+VS+ DL  +  I  G G        
Sbjct: 5   TVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDL--IRKIYKGKGLFY-VTLL 61

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR--SSHSF 206
                +   ++++KLL K     V ++MT   + V E T +ED AR  S  + 
Sbjct: 62  YSV-IFLDESKIKKLLGKK----VEEIMTKKVITVDEDTTIEDVARIMSKKNI 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 61.8 bits (151), Expect = 3e-13
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  V P T+++EALE++ E  I+  PV+D+D KLVG+V+  DLL
Sbjct: 1   VKDIMTPD--VVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLL 52

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 62.8 bits (153), Expect = 4e-13
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 27/109 (24%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
            ++  V P  TV EAL +++E  I+G PV+DDD +LVG+V++ DLL   +  G       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG------- 53

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                     VGD+MT   V V   T+LE+AA 
Sbjct: 54  --------------------LDPLVTVGDVMTRDVVTVSPDTSLEEAAE 82

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 18/104 (17%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           + PTTT+ EALE++ E +I   PV+D++ +LVG+V+D DL           A  S F   
Sbjct: 6   ITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR---------DASPSPFTT- 55

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                       LL K     V ++MT   + V     +E+AA 
Sbjct: 56  -----LSEHELYLLLKMP---VKEIMTKDVITVHPLDTVEEAAL 91

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 31/117 (26%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V D MT   ++  VKP T+V +AL ++ E  ++  PV+DD  KLVG++++ D+  L +++
Sbjct: 1   VKDIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDI--LRALA 55

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
             G+                              V ++MT   V V   T LE+A  
Sbjct: 56  AGGKRLLP--------------------------VKEVMTKPVVTVDPDTPLEEALE 86

Length = 117

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   MT    +  + P  ++ +A E+++EKR+ G PV+DDD KLVG+V++ DLL
Sbjct: 72  VRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN----S 152
                 T+ +A  +L E +I+G PV+D   KLVG+VS+ D+L L  +     + N    S
Sbjct: 5   TCNADDTISDAARLLRENKISGAPVLDGG-KLVGIVSESDILKL--LVTHDPSGNLWLPS 61

Query: 153 MFPEVDSTWKTF---NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARS 202
               ++   + F    E ++ L+      V D+MT   + +    ++EDAA  
Sbjct: 62  PLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAEL 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 54.4 bits (132), Expect = 5e-10
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 33/103 (32%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P  TV EALE++ E  I+G PV+DDD KLVG+V++ DL     +              
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETDLDKP----------- 55

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRE-TTNLEDA 199
                                V ++MTP  ++     T+LE+A
Sbjct: 56  ---------------------VSEVMTPENLLTTVEGTSLEEA 77

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 18/108 (16%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
            +  +    ++ +A E++ E RI   PV+++D KLVGL++  DLL         RA  S 
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL---------RAALSS 52

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
             +           ++ L+K     V ++M    + V   T L +AA 
Sbjct: 53  LSDNG---------EESLTKERDVPVAEVMKTDVLTVTPDTPLREAAE 91

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT   ++  V P T+++EA E+++E  I   PV+DD+ +LVG+V+  D+L
Sbjct: 59  TVGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 33/105 (31%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P TT+ EAL ++    I+G PV+D++ KLVG++++ D+                F E 
Sbjct: 100 VTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR---------------F-ET 143

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAAR 201
           D            LS+     V ++MT   +V V E T LE+A  
Sbjct: 144 D------------LSQP----VSEVMTKERLVTVPEGTTLEEALE 172

Length = 486

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 51.7 bits (125), Expect = 5e-09
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT  E L      T+++EALE+L E +I   PV+DD+ KL GL+
Sbjct: 55  PVSEVMT-PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLI 102

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 18/105 (17%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P T++ EAL+++ E  I   PV+D   KLVG+V+D DL      S S      ++  
Sbjct: 5   TVTPDTSLMEALKLMKENSIRRLPVVDRG-KLVGIVTDRDLKL---ASPSKATTLDIW-- 58

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                    E+  LLSK     V D+MT  P+ V    ++E+AA 
Sbjct: 59  ---------ELYYLLSKIK---VSDIMTRDPITVSPDASVEEAAE 91

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 25/106 (23%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154
                P  +V EA+E L++ +I+G PV+DD+  LVG +S+ D L    +  S     S  
Sbjct: 3   PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLK--QLLES-----SYH 55

Query: 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAA 200
            +  +T                  V D+MT   + V    ++ D A
Sbjct: 56  CDGVAT------------------VRDIMTTEVLTVSPDDSIVDLA 83

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 49.8 bits (120), Expect = 6e-09
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V P TT++EALE+L E  I   PV+D++ +LVG+V+  D++
Sbjct: 4   TVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 54.4 bits (132), Expect = 7e-09
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT KE L  V   TT++EALE+L E RI   PV+DD+ +L GL+
Sbjct: 148 PVSEVMT-KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195

Length = 486

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT       + P     EALE++ E +IT  PV+DD+ + VG++  +DLL 
Sbjct: 60  PVADVMTRNP--KTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 17/108 (15%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           ++  V P T+++EA  +L   RI   PV+D D +LVG+V+  DL  L      GR     
Sbjct: 3   DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDL--LRHARPDGRRPLRG 60

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                   +T               VGD+M+P  V VR  T + +   
Sbjct: 61  RLRGRDKPET---------------VGDIMSPPVVTVRPDTPIAELVP 93

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 48.7 bits (117), Expect = 6e-08
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 27/105 (25%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            +   T ++E L+++       FPV+DDD +LVG+VS  D+  +            +F  
Sbjct: 5   TIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI------------LFDP 52

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                     +  L+      +  D+MT  PVVV    +LEDA +
Sbjct: 53  ---------SLYDLV------VASDIMTKPPVVVYPEDSLEDALK 82

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT       V P  +V+EA E+++E++I+G PV+DD  +LVG++++ DL 
Sbjct: 68  KVSDIMTRD--PITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.3 bits (116), Expect = 9e-08
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 26/106 (24%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           ++  V+P  TV EA +++ EK I    V+DD  +LVG+ S+ D++    ++  G +    
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVR--KVALRGASALDT 59

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
                                    V ++MT   + V     +++A
Sbjct: 60  ------------------------PVSEIMTRNVITVTPDDTVDEA 81

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D+M+T  ++  V P T + E  E++VE  I G   + +D +LVG+V+  DLL
Sbjct: 58  VKDYMST--DVVTVPPDTPLSEVQELMVEHDI-GRVPVVEDGRLVGIVTRTDLL 108

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V + MT +EE+  V     ++EAL++L E RI   PV+D + +LVGL++  D++ 
Sbjct: 145 VSEVMT-REEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
              +  S      S         V + MT K  +  V   TT+++   I+ +K I   PV
Sbjct: 57  YVTLLYSVIFLDESKIKKLLGKKVEEIMTKK--VITVDEDTTIEDVARIMSKKNIKRLPV 114

Query: 122 IDDDWKLVGLVSDYDLL 138
           +DD  KLVG++S  D++
Sbjct: 115 VDDG-KLVGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            V + MT    +  V P  TVDEA+ ++ E+R    PV+D   KLVG+VS
Sbjct: 60  PVSEIMTRN--VITVTPDDTVDEAMALMTERRFRHLPVVDGG-KLVGIVS 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 34/119 (28%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V + M+ K  L  V+P  T+ EA ++  EK I G PV+DDD K+VG++           
Sbjct: 173 KVKNLMSKK--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGII----------- 218

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAAR 201
                              T +++ K ++  N    V D M    + + E  ++ DA R
Sbjct: 219 -------------------TLSDIAKAIANGNLDAKVSDYMRKNVITINEDEDIYDAIR 258

Length = 294

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V   MTT E+L        +++  E++++ R   +PV+D+D K+VG++S Y LL+
Sbjct: 248 VSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT  E+L       T++EA EIL E +I   P++DDD +LVGL++  D+ 
Sbjct: 142 KVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIE 196

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 24/116 (20%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           EE+  V+ T T+  AL +L +   +  PV+D + K VG +S  D+L              
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-------------- 46

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSS--HSF 206
                   WK        L +     V D+M     V+ +  ++E+         F
Sbjct: 47  --------WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQPF 94

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT   ++  V P  TV+EA  ++ E RI   PV++D  +LVG++++ DLL
Sbjct: 68  PVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVEDG-RLVGIITETDLL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVID 123
           +     +    AA    +  V + MT    +  V P T ++EALE++VE  +I   PV+D
Sbjct: 44  IITERDILRALAAGGKRLLPVKEVMTKP--VVTVDPDTPLEEALELMVERHKIRRLPVVD 101

Query: 124 DD-WKLVGLVSDYDLL 138
           DD  KLVG+++  D+L
Sbjct: 102 DDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYD 136
           V DFMT  E+L      TT+ EA +I+ + ++   P++D +  LV LV   DYD
Sbjct: 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYD 216

Length = 502

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT    +  V     VDEA  ++ E ++   PV+DDD +LVG+VS  DL 
Sbjct: 59  TVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 14/44 (31%), Positives = 31/44 (70%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
             +P T + + L++LVE+R++  P++D++ K+V + S +D++ L
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + M T   +  V P T + EA EI+VE +I   PV+DD   LVG+++  D L
Sbjct: 68  PVAEVMKTD--VLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 29/109 (26%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153
           ++  V    TVDE L ++  +R  G+PV+DD  +LVG+V    L  +  +   GR     
Sbjct: 2   DVVTVPVDLTVDEVLALMFGERHRGYPVVDDG-RLVGIV---TLADIRRVPAEGREAT-- 55

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARS 202
                                   +VGD+MT  PV       L DA + 
Sbjct: 56  -----------------------VLVGDVMTRDPVTASPDETLRDALKR 81

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + MT +E L V     T++EA EIL E +    P+++DD +LV LV+  DL 
Sbjct: 58  PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
            V + MT +E+L V     +++EA E+L E R    P+++D+ +LV LVS  DL    
Sbjct: 160 PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217

Length = 495

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 31/109 (28%)

Query: 93  EELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 150
           + L +V P T++ +AL  +  K   +T   V+D+D +LVG+ +D DL          RA 
Sbjct: 2   DALPLVSPDTSLKDALLEMSRKGLGMTA--VVDEDGRLVGIFTDGDL---------RRA- 49

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
                           ++K L       V D+MT  P  +       +A
Sbjct: 50  ----------------LEKGLDILTLP-VADVMTRNPKTIDPDALAAEA 81

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  ++P T+V +   +++E  I G PV+DD  KLVG+V+  D+L
Sbjct: 69  VSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDG-KLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 17/106 (16%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNSMFP 155
            V PTT + EA +I+V       PV+D+   KLVG+++  D+L                 
Sbjct: 5   TVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKY--------------- 49

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
            +    K          +   + V  +MT   + +    +++DAA 
Sbjct: 50  -LGGGEKFNKIKTGNGLEAINEPVRSIMTRNVITITPDDSIKDAAE 94

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
           TV D MT  E+   ++ T TV++ L+++ +   + FPV++   K+VG+V+  D+L    S
Sbjct: 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPS 248

Query: 143 IS 144
            +
Sbjct: 249 TT 250

Length = 432

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               MT       V P T VDEA ++L+E  I+  PV+D++ +L+G+++  DLL
Sbjct: 69  AHQIMTRD--PITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239971 cd04598, CBS_pair_GGDEF_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 28/111 (25%)

Query: 93  EELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYDLLALDSISGS-GRAD 150
                V P TTV++ LE       ++   V+DD  + VGL+    L+ L  +S   GRA 
Sbjct: 1   RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDG-RPVGLIMREALMEL--LSTPYGRA- 56

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                              L  K   K V ++M P P++V   T LE+ +R
Sbjct: 57  -------------------LYGK---KPVSEVMDPDPLIVEADTPLEEVSR 85

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 119

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 33/99 (33%)

Query: 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162
           T D+ LE+L E +++G PV+    +LVG+++  DLL                       +
Sbjct: 11  TRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-----------------------R 47

Query: 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
              E Q  L          LMT  P  V    ++++AA+
Sbjct: 48  NPEEEQLAL----------LMTRDPPTVSPDDDVKEAAK 76

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 38/110 (34%)

Query: 97  VVKPTTTVDEALEIL-----VEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 151
            V+   TV EALE L       + I    V+D++ +L+G+VS  DLL          AD 
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL---------LADP 51

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                      V D+M    + V    + E+ AR
Sbjct: 52  D------------------------TPVSDIMDTDVISVSADDDQEEVAR 77

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT    +  V   T + E  E++ E RI   PV+    +LVG+VS  DLL 
Sbjct: 82  KVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGG-RLVGIVSRADLLR 134

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 28/41 (68%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            +    ++ EA ++++E+ I   PV+D+D +LVG+V+ +D+
Sbjct: 6   TISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDI 46

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            VG+ M+T   L  + P  +++EA +++ +  I   PV+DDD +LVG+V+  D++
Sbjct: 59  PVGEVMSTP--LITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT  +++  + P  ++++A E++V  +I   PV++D  +LVG+V+  D++
Sbjct: 91  VRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDG-RLVGIVTRGDII 141

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           SG+ T  D +  K E+      TTV E  + +   RI   P+I+ + KL+GL+ D+DLL
Sbjct: 37  SGIITERDLIA-KSEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 48  VLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107
             A   D    L + S                       D MT  EE+  V P   V +A
Sbjct: 46  AFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDA 103

Query: 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            ++++E  I+G PV+D+D  +VG+++  D+   
Sbjct: 104 AKLMLEANISGLPVVDND-NIVGVITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            ++  V P  TV +A+E + E  ++  PV+DD  ++VG + + DLL
Sbjct: 1   GDVVSVAPDDTVSQAIERMREYGVSQLPVVDDG-RVVGSIDESDLL 45

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 91  TKEELHV-----VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 145
           T ++LH+     V PT TV +A+EIL E      PV+ +  K++G V+  +LL+      
Sbjct: 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK 395

Query: 146 SGRAD------NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVR 191
           +   D      +  F ++    +  +++ K L K +  +V +   P  VV +
Sbjct: 396 ANPDDAVSKVMSKKFIQIGEG-EKLSDLSKFLEKNSSAIVTEEGKPIGVVTK 446

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 36/107 (33%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSM 153
            + P TTV + LE++  K I+G PV++D     KLVG+++  D+  +             
Sbjct: 92  TISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV------------- 138

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDA 199
                              K  GK V ++MT   V+ V E  +LE+A
Sbjct: 139 -------------------KDKGKPVSEVMTREEVITVPEGIDLEEA 166

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           TV   MT   +L  V    ++ E L++L E+ +    V++D  +++GL+++ DLL  
Sbjct: 58  TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLRR 114

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V P   V EA +++VE  I   PV+DD  KLVG+V+  D++ 
Sbjct: 64  TVSPDDDVKEAAKLMVENNIRRVPVVDDG-KLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V D     ++   V P T++ EA  ++ E  +   PV+D++ KL+GLVS  DL
Sbjct: 69  QVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           + L  + P  T+ EA  +     I G PV+DD  KLVG+V+  D+   
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDG-KLVGIVTLSDIAHA 47

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239981 cd04608, CBS_pair_PALP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V PT T  EA+EIL EK     PV+D+  K++G+V+  +LL+  S+S SG+   S  P  
Sbjct: 7   VLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLS--SLS-SGKVQPSD-PVS 62

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHS 205
            + +K F  V K  + T GK+   L T A ++V        A      
Sbjct: 63  KALYKQFKRVNK--NDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQ 108

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 33/109 (30%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           E+   +  T TV +  E+  E   + FPV+D+  K+VG+V+  D      ++G    D  
Sbjct: 2   EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKD------VAG---KDPD 52

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                     +  +MT  P+ V   T++   A 
Sbjct: 53  T------------------------TIEKVMTKNPITVNPKTSVASVAH 77

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            ++ D M   E++  V+P  ++ + L +++++     PV+D+D KLVGL++
Sbjct: 54  KSLEDIM--LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            V   MT           T V EAL ++V+ +    PV+D   ++VGL+ 
Sbjct: 59  LVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 34/106 (32%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
             V P  TV + ++++ E    GFPV+D+  K+VG+VS  DLL  D              
Sbjct: 5   ITVSPDNTVKDVIKLIKETGHDGFPVVDNG-KVVGIVSARDLLGKDPD------------ 51

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                + V ++M+   VV     ++ DAAR
Sbjct: 52  ---------------------ETVEEIMSKDLVVAVPEMDIMDAAR 76

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           TVGD M+    +  V+P T + E + +L +      PV+D+D +LVG+V+  DL+A
Sbjct: 70  TVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 27/105 (25%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V P  T+ EA  ++ E  +   PV ++D +LVG+V+D D+  + +++  GR  ++    
Sbjct: 5   TVSPDDTIREAARLMREHDVGALPVCEND-RLVGIVTDRDI-VVRAVA-EGRDPDTTT-- 59

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                 VGD+MT   V V E  ++++AAR
Sbjct: 60  ----------------------VGDVMTRGVVTVTEDDDVDEAAR 82

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 37/108 (34%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGRADNSM 153
           V+ P  TV + LEI  +K  +   +  D     KL+G+V+  D+  +   S         
Sbjct: 108 VLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKS--------- 158

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDA 199
                                    V ++MTP    VV     +LE+A
Sbjct: 159 -----------------------TPVSEVMTPREKLVVGNTPISLEEA 183

Length = 495

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 18/109 (16%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
           + +  V P   V  A  ++++  I+  PVI+   KLVG+V++ D+           A  S
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGG-KLVGIVTEKDI---------ADALRS 50

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
             P V               +     V D+MT   + +   T++ D A 
Sbjct: 51  FRPLVRDR--------HQERRIRNLPVSDIMTRPVITIEPDTSVSDVAS 91

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            VG+ M++   L  V   T++ +A +++ E  I    V+DDD +L+GL+S  DLL 
Sbjct: 57  PVGEVMSSP--LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV   M+T   ++ V P  ++  A+E+++E  I   PV+++  +LVG+V  +D+L
Sbjct: 68  TVEKIMSTP--VYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +++  V    T+DEAL+I+ EK+I   PV+DD+ KL+G+V   D+L
Sbjct: 64  SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDN-KLIGVVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLA 139
              D MT      VV P  ++++AL+   +      PV+DDD  KL+G++S  DLL+
Sbjct: 59  VASDIMTKPPV--VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 27/108 (25%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
            V PTTTV EA +++ EKR++   V+D + KLVG+ +  D+                   
Sbjct: 5   TVSPTTTVQEAAKLMREKRVSCVLVMDGN-KLVGIFTSKDI------------------- 44

Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSH 204
                     V + L      +V  +MTP PV     T + +A     
Sbjct: 45  ------ALRVVAQGLD-PESTLVERVMTPNPVCATSDTPVLEALHLMV 85

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           VGD MT         P  T+ +AL+ + E+ I   PV+DD  +LVG+VS  DLL
Sbjct: 58  VGDVMTRD--PVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 75  SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK----RITGFPVIDDDWKLVG 130
           S A +    +V D MT      V+  T T DE +++   K     I+  PV+D + +++G
Sbjct: 47  SKAVARDKKSVEDIMTRN----VI--TATPDEPIDVAARKMERHNISALPVVDAENRVIG 100

Query: 131 LVSDYDLLAL 140
           +++  D+  L
Sbjct: 101 IITSEDISKL 110

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGSGRADN 151
           E++  V P  ++   ++ + +  +    V+DD+ K VG+++  DL  A    +  G    
Sbjct: 1   EDIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKK 60

Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
           S+  +  +  K +  V K +         D+MT   + V    ++ DAA+
Sbjct: 61  SIKMKRKAGQKRYRYV-KEVPLV----AEDIMTEEIITVSPNDDVVDAAK 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 81  GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           GV TV D MTT  E+  V P  ++ +  +++++ +   +PV+DD  KLVG +S  D+L 
Sbjct: 58  GVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDG-KLVGQISRRDVLR 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 41/112 (36%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVS--DYDLLALDSISGSGRAD 150
            V+ P  TV + LEI  +K  +G PV +D     KL+G+V+  D D L            
Sbjct: 5   SVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETP------ 58

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAA 200
                                       + ++MTP    VV      LE+A 
Sbjct: 59  ----------------------------LSEVMTPREVLVVAPTGITLEEAN 82

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V P T++ EA +++ E+ +    V+D D + +G+V++ D++ 
Sbjct: 5   TVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVR 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 18/104 (17%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V+    ++E  EI  + +     V++D+ +LVG++SD D L   S            P +
Sbjct: 6   VEMDDRLEEVREIFEKHKFHHLLVVEDN-ELVGVISDRDYLKAIS------------PFL 52

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
            +  +T  ++  L      +    +MT  P+ V   T +++A++
Sbjct: 53  GTAGETEKDLATLN-----RRAHQIMTRDPITVSPDTPVDEASK 91

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           ++  +     V +A +++ +  I+G PV+D+  KL+G +S  DL
Sbjct: 2   KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDL 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALD 141
           TV + MT + ++  +  T TV+E +E+++E   +  PV D D   ++G+V   DLL   
Sbjct: 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRAL 265

Length = 429

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 40/123 (32%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
           T G  MTT  E   +    TVDEAL+ + E+      I    V+D+  KL+G+VS  DLL
Sbjct: 133 TAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                     A+                            + DLM    V V    + E+
Sbjct: 191 ---------TAEPDEL------------------------LKDLMEDDVVSVLADDDQEE 217

Query: 199 AAR 201
            AR
Sbjct: 218 VAR 220

Length = 451

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V DFMT   +    K    + EALE L  ++IT   V+DD  K++G++
Sbjct: 221 EVRDFMTLGPK--TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V+  TT + EA E L+E +     V+D D  +VG+++  DLL
Sbjct: 5   VLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL 46

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 22/102 (21%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V   T++D A ++L E RI   PV+D+  +LVG+V+  DLL          A  S F   
Sbjct: 258 VSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLL--------KHARPSPF--- 306

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
                     Q+L        V  +MT   V VR  T   + 
Sbjct: 307 ----------QRLRFLRPPT-VKGIMTTPVVTVRPDTPAVEL 337

Length = 382

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 15/72 (20%)

Query: 81  GVYTVGDF---------MTTKEELHVVKPTTT------VDEALEILVEKRITGFPVIDDD 125
           GV+T GD          +TT     + +  TT        +A EIL++++IT  PV+D++
Sbjct: 244 GVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN 303

Query: 126 WKLVGLVSDYDL 137
            KL G ++  D 
Sbjct: 304 GKLTGAINLQDF 315

Length = 321

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            V + M     L  V P   ++E  E+L    +    V+D+  K VG+++  DLL  
Sbjct: 58  PVREVMGEP--LPTVDPDAPIEELSELLDRGNVA--VVVDEGGKFVGIITRADLLKY 110

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 13/53 (24%), Positives = 30/53 (56%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT+ ++L        ++EA  +L + +    P++++D +LV LV+  D+
Sbjct: 165 LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDV 217

Length = 505

>gnl|CDD|239970 cd04597, CBS_pair_DRTGG_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           +P   + EAL ++ E  I   PV+DDD    G+++  DL
Sbjct: 72  RPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDL 110

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 31/107 (28%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNS 152
           ++  +    T++E LE++ E   + FPV D D   ++G+V   DLL              
Sbjct: 2   DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRA------------ 49

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
                            L        + DL+ P P+ V E+T L+D 
Sbjct: 50  -----------------LAEGEEDLDLRDLLRP-PLFVPESTPLDDL 78

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
COG4109	432	Predicted transcriptional regulator containing CBS	99.71
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.47
COG2524	294	Predicted transcriptional regulator, contains C-te	99.46
COG2524	294	Predicted transcriptional regulator, contains C-te	99.42
COG2905	610	Predicted signal-transduction protein containing c	99.37
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.33
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.31
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.29
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.24
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.22
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.21
COG3620	187	Predicted transcriptional regulator with C-termina	99.21
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.2
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.19
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.18
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.17
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.16
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.16
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.15
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.14
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.13
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.13
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.13
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.12
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.12
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.12
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.12
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.12
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.12
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.11
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.1
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.1
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.1
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.1
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.09
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.09
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.09
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.08
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.08
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.08
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.07
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.07
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.07
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.07
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.06
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.06
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.06
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.06
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.06
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.06
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.06
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.05
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.05
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.05
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.05
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.05
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.04
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.04
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.04
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.04
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.04
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.04
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.04
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.04
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.04
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.04
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.04
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.03
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.03
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.03
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.03
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.03
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.03
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.02
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.02
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.02
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.02
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.01
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.01
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.01
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.01
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.0
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.0
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.0
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.0
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.0
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.0
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.99
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.99
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.99
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.99
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.99
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.99
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.99
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.97
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.97
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.97
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.97
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.97
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.97
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.96
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.96
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.95
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.95
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.95
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.94
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.94
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.94
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.94
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.93
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.93
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.93
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.93
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.93
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.93
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.92
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.92
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.91
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.91
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.91
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.91
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.91
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.91
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.9
COG0517	117	FOG: CBS domain [General function prediction only]	98.9
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.9
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.89
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.89
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.89
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.89
PRK11573	413	hypothetical protein; Provisional	98.88
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.87
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.87
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.87
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.86
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.86
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.85
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.85
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.85
COG2905	610	Predicted signal-transduction protein containing c	98.85
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.84
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.84
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.84
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.84
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.83
COG3620	187	Predicted transcriptional regulator with C-termina	98.83
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.83
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.83
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.83
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.83
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.82
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.82
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.81
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.8
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.8
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.8
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.79
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.79
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.79
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.79
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.78
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.78
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.76
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.74
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.74
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.73
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.72
COG0517	117	FOG: CBS domain [General function prediction only]	98.72
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.71
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.7
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.66
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.61
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.6
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.58
COG4109	432	Predicted transcriptional regulator containing CBS	98.45
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.42
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.22
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.22
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.2
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.12
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.07
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.98
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	97.88
PRK11573	413	hypothetical protein; Provisional	97.84
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.8
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.78
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.72
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.63
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.34
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.2
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.15
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	96.39
PF07085	105	DRTGG: DRTGG domain; InterPro: IPR010766 This pres	95.54
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	95.31
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	95.27
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	94.98
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	94.85
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.39
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	92.97
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	92.08
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.11
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	90.56
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	82.76
KOG2118	498	consensus Predicted membrane protein, contains two	80.31

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.71  E-value=1.6e-17  Score=139.89  Aligned_cols=161  Identities=22%  Similarity=0.299  Sum_probs=143.3

Q ss_pred             ccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhhhcc---CC
Q 028558            5 VLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSA---AP   78 (207)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~~~~---~~   78 (207)
                      .-|+++.+|+.|.+++.     .|+++| .++++|| |+.++.++  .+.+..+++++ |.|| +.++..+.+++   ..
T Consensus       112 ~~~g~LlIVGnR~~iq~-----lAL~~~-~AVLvTG-GF~~s~evi~lAne~~lPvls-tsYDTFTVAtmIN~Al~n~lI  183 (432)
T COG4109         112 LDPGGLLIVGNREDIQL-----LALENG-NAVLVTG-GFDVSDEVIKLANEKGLPVLS-TSYDTFTVATMINKALSNQLI  183 (432)
T ss_pred             cCCCceEEEecHHHHHH-----HHHhcC-CeEEEeC-CCCccHHHHHhhcccCCceEE-ecccceeHHHHHHHHHHHhhh
Confidence            45899999999998877     899886 4688898 99999999  89999999999 9999 98988888765   23


Q ss_pred             CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      +.+-++|+++|+|..+..++.+++++.+..++..+.++++|||+|...+++|+||.+|+...                  
T Consensus       184 KkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~------------------  245 (432)
T COG4109         184 KKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK------------------  245 (432)
T ss_pred             hhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC------------------
Confidence            45677999999987789999999999999999999999999999999999999999999873                  


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                     .++.++..+|++.|+++.+.+++..++++|.-.
T Consensus       246 ---------------~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE  278 (432)
T COG4109         246 ---------------KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWE  278 (432)
T ss_pred             ---------------CCCccHHHHhccCCeeecccchHHHHHHHHHhc
Confidence                           256789999999999999999999999999643

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.47  E-value=1.2e-13  Score=126.24  Aligned_cols=175  Identities=21%  Similarity=0.297  Sum_probs=124.2

Q ss_pred             cccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhhhccCCCCCccc
Q 028558            8 HSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYT   84 (207)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~~~~~~~~~~~~   84 (207)
                      +.+-+++.|.+.+     ..|++.|++|+|+|+ |..+.+.+  .+++.+++++. |++| +.+.+.+..+.       +
T Consensus       182 ~~lvi~gdr~d~~-----~~ai~~~~~~lIlt~-g~~~~~~v~~la~~~~i~ii~-t~~dt~~t~~~l~~~~-------~  247 (546)
T PRK14869        182 GDIVIVGDREDIQ-----LAAIEAGVRLLIITG-GAPVSEDVLELAKENGVTVIS-TPYDTFTTARLINQSI-------P  247 (546)
T ss_pred             CCEEEEcCcHHHH-----HHHHHcCCCEEEECC-CCCCCHHHHHHHHhCCCeEEE-ecccHHHHHHHhhcCC-------C
Confidence            3333444454443     378999999999998 77777766  56788999999 9999 77777776654       6


Q ss_pred             cccccc-ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh-
Q 028558           85 VGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK-  162 (207)
Q Consensus        85 v~~vm~-~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~-  162 (207)
                      |+++|+ +  ++.++++++++.++.+.|.+++++++||+|++|+++|+||.+|+.+....         .+...+++.. 
T Consensus       248 V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~---------~~iLVD~~e~~  316 (546)
T PRK14869        248 VSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRK---------KVILVDHNEKS  316 (546)
T ss_pred             HHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccC---------ceEEEcCcccc
Confidence            999999 7  89999999999999999999999999999999999999999999974311         0011111110 


Q ss_pred             h-HHHHHH--HHhhhcCCcccccccCCCeEe---cCCCCHHHHHHHHhhcC
Q 028558          163 T-FNEVQK--LLSKTNGKMVGDLMTPAPVVV---RETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~-~~~~~~--~~~~~~~~~v~~im~~~~~~v---~~~~~l~e~l~~m~~~g  207 (207)
                      . ...+..  ...-..+.+++++++..++.+   +...+.+.+.++|.++|
T Consensus       317 q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~  367 (546)
T PRK14869        317 QAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENG  367 (546)
T ss_pred             ccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcC
Confidence            0 000000  000124567788888776655   44666777888877654

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.46  E-value=9.5e-14  Score=112.81  Aligned_cols=112  Identities=15%  Similarity=0.233  Sum_probs=95.5

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      |-++++++|+++.+||+....++|+++..|.+            +.++.+++ +-.|.  +..+++    ..-..+|+++
T Consensus       179 s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd------------~dk~vGii-t~~dI--~~aia~----g~~~~kV~~~  239 (294)
T COG2524         179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVD------------DDKIVGII-TLSDI--AKAIAN----GNLDAKVSDY  239 (294)
T ss_pred             cCCceEecCCccHHHHHHHHHHcCccCCceec------------CCceEEEE-EHHHH--HHHHHc----CCccccHHHH
Confidence            55788999999999999999999999998885            33777887 66661  122222    2335689999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |.+  ++++++.++.+.||+++|..+++.++.|+|.+|+++|+||++|++..+
T Consensus       240 M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i  290 (294)
T COG2524         240 MRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI  290 (294)
T ss_pred             hcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence            999  999999999999999999999999999999999999999999999864

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.42  E-value=5e-13  Score=108.63  Aligned_cols=95  Identities=28%  Similarity=0.371  Sum_probs=85.3

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ...+|+++|++  +++++.+++|+.++..+|.+++++..||+|+ ++++|++|.+|+..+.+.                 
T Consensus       170 Pk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~-----------------  229 (294)
T COG2524         170 PKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIAN-----------------  229 (294)
T ss_pred             CcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHc-----------------
Confidence            35689999999  9999999999999999999999999999995 599999999999986532                 


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  .....+++++|.+.++++.+++.+.+|+++|..+|
T Consensus       230 ------------g~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~n  264 (294)
T COG2524         230 ------------GNLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNN  264 (294)
T ss_pred             ------------CCccccHHHHhccCCceEcCchhHHHHHHHHHhcC
Confidence                        12467899999999999999999999999998875

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.37  E-value=1.2e-12  Score=116.53  Aligned_cols=115  Identities=17%  Similarity=0.246  Sum_probs=101.1

Q ss_pred             cccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558            8 HSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD   87 (207)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~   87 (207)
                      ++.|.++|.|..+..+|++.|.++|++++++.+           +.....+++ |..|. ..++++.+.   ..+.+|++
T Consensus       155 ~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~-----------~~~~~~GIv-T~~dl-~~~v~~~g~---~~~~~V~e  218 (610)
T COG2905         155 KTLPAVTVSPQASIQDAARKMKDEGVSSLVVLD-----------DSGPLLGIV-TRKDL-RSRVIADGR---SKTQKVSE  218 (610)
T ss_pred             hcCCCcccCccCcHHHHHHHHHhcCCCeEEEEc-----------CCCCcccee-ehHHH-HHHHHhcCC---Ccccchhh
Confidence            567899999999999999999999999888887           666667787 88884 456666543   55678999


Q ss_pred             cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        88 vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +|+.  +++++..++.+.||.-.|.+++++|+||++ +|+++|+||..||++..
T Consensus       219 vmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         219 VMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF  269 (610)
T ss_pred             hhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence            9999  999999999999999999999999999998 69999999999999864

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.33  E-value=2.3e-12  Score=106.81  Aligned_cols=111  Identities=27%  Similarity=0.355  Sum_probs=94.0

Q ss_pred             hhccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCC
Q 028558           73 ANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS  152 (207)
Q Consensus        73 ~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~  152 (207)
                      .+++.++..+++..++|++  +++++++++++.+|+..|.+|+++.+||+|++.+++|+|+.+|+.+.-.          
T Consensus       235 lqa~~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~----------  302 (382)
T COG3448         235 LQALRRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR----------  302 (382)
T ss_pred             HHHHHHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC----------
Confidence            3566777889999999999  9999999999999999999999999999999999999999999997421          


Q ss_pred             CCCcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                              |+.+..++    -....++..+|++++.++.++++..+++..|.+.|
T Consensus       303 --------~~p~qrlr----~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g  345 (382)
T COG3448         303 --------PSPFQRLR----FLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEG  345 (382)
T ss_pred             --------cchHHHhh----ccCCCcccccccCcceeecCCCcHHHHHHHhhcCC
Confidence                    21111111    23567799999999999999999999999998765

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.31  E-value=1.1e-11  Score=89.48  Aligned_cols=108  Identities=16%  Similarity=0.166  Sum_probs=87.0

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +++++++.+..+|.+.+.+.+.+.++|++           +..++.+++ +..|....   .   .......+++++|..
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~dl~~~---~---~~~~~~~~v~~~~~~   64 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVD-----------EENKVLGQV-TLSDLLEI---G---PNDYETLKVCEVYIV   64 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCCEEEEE-EHHHHHhh---c---cccccccChhheeec
Confidence            35778888999999999888999998886           556677777 76663111   0   111122468899988


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus        65 --~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          65 --PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             --CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence              8999999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=1.2e-11  Score=89.59  Aligned_cols=111  Identities=10%  Similarity=0.241  Sum_probs=89.7

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      |.+++++.+..+|...+.+.+.++++|++           +..++.+++ +..|...  .+.. ........+++++|.+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd-----------~~g~~~G~v-t~~dl~~--~~~~-~~~~~~~~~v~~~~~~   67 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCD-----------PHGKLAGVL-TKTDVVR--QMGR-CGGPGCTAPVENVMTR   67 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEEC-----------CCCCEEEEE-ehHHHHH--HHhh-cCCCcccCCHHHHhcC
Confidence            56788999999999999999999999996           556677787 7666211  1111 0112234568999998


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus        68 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          68 --AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             --CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence              8999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.24  E-value=4.6e-11  Score=102.46  Aligned_cols=100  Identities=26%  Similarity=0.288  Sum_probs=83.2

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ..++|+++|++.++++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+......               
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~---------------  264 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI---------------  264 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC---------------
Confidence            55679999986336899999999999999999999888888998899999999999986431100               


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  .....++.++|+++++++.+++++.+++++|.+++
T Consensus       265 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  299 (326)
T PRK10892        265 ------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRH  299 (326)
T ss_pred             ------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCC
Confidence                        01245799999999999999999999999998764

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=2.9e-11  Score=85.90  Aligned_cols=93  Identities=14%  Similarity=0.168  Sum_probs=78.6

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc-CCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS-SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~-~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +++++++.+..+|++.+.++++++++|++           + ..++.|++ |..|...      .             + 
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd-----------~~~~~~~Giv-t~~Dl~~------~-------------~-   50 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLWD-----------SRKQQFVGML-TITDFIL------I-------------L-   50 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEEe-----------CCCCEEEEEE-EHHHHhh------h-------------e-
Confidence            57899999999999999999999999995           3 35677888 6666310      0             0 


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~  139 (207)
                         .+.++.+++++.++++.|.+++++++||+|++ |+++|+||.+|+++
T Consensus        51 ---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          51 ---RLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             ---eeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence               06789999999999999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.21  E-value=3.5e-11  Score=76.72  Aligned_cols=55  Identities=45%  Similarity=0.685  Sum_probs=51.9

Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |+++|++  +++++++++++.++++.|.+++++++||+|++|+++|+||.+||++++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            5789999  999999999999999999999999999999999999999999999753

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.21  E-value=2.2e-11  Score=92.51  Aligned_cols=97  Identities=18%  Similarity=0.275  Sum_probs=83.9

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ..+++..+|+.  +++.+.+++++.++.++|..++++.+||+++ |+++|-||..++.++.-..                
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~----------------  123 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEG----------------  123 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcc----------------
Confidence            56688999999  9999999999999999999999999999995 8999999999999864110                


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                .+...+..+.++|..++++|++++++..+.+++..|
T Consensus       124 ----------~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~  159 (187)
T COG3620         124 ----------MESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH  159 (187)
T ss_pred             ----------ccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC
Confidence                      012345678999999999999999999999998765

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=6.3e-11  Score=86.25  Aligned_cols=113  Identities=16%  Similarity=0.228  Sum_probs=88.6

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      |+++++++.+..+|.+.+.+++.+++.|++           +..++.+++ +..|.... ...   .......+++++|.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d-----------~~~~~~Giv-t~~dl~~~-~~~---~~~~~~~~~~~~~~   65 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD-----------EDGDLVGVV-SRKDLLKA-SIG---GADLQKVPVGVIMT   65 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCCEEEEE-EHHHHHHH-HHc---CCCccCCCHHHHhC
Confidence            567889999999999999899999999986           455677777 66662111 111   11223456888997


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC---CcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~---g~lvGiVt~~dl~~  139 (207)
                      +..++.++++++++.++++.|.+++.+.+||+|++   |+++|+||.+|+.+
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          66 RMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            42268899999999999999999999999999976   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.19  E-value=4e-11  Score=99.47  Aligned_cols=118  Identities=22%  Similarity=0.227  Sum_probs=99.2

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccch-hh-hhhhhhhccCCCCCccccc
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAV-FA-SGTLTANSAAPSSGVYTVG   86 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d-~~-~~~~~~~~~~~~~~~~~v~   86 (207)
                      |-.|+|++++.+...|-+++.+|++.++.|++           ++.++.+++ +-+| .. ..+--.+.+ +....-+++
T Consensus       252 SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d-----------~~~rl~GiV-t~~dl~~~a~~~p~qrl-r~~~~~~vk  318 (382)
T COG3448         252 SRDVVTVSTDTSIDHARKLLQEHRIKALPVLD-----------EHRRLVGIV-TQRDLLKHARPSPFQRL-RFLRPPTVK  318 (382)
T ss_pred             CccceecCCcCChHHHHHHHHHcCcccccccc-----------cccceeeee-eHHHHhhccCcchHHHh-hccCCCccc
Confidence            45789999999999999999999999999998           778888888 7777 21 111111222 234556899


Q ss_pred             ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+|++  ++.++.++++..+++-.+.+.+.+++||+|.+|+++||||..|++.++
T Consensus       319 ~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal  371 (382)
T COG3448         319 GIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAAL  371 (382)
T ss_pred             ccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHH
Confidence            99999  899999999999999999999999999999999999999999999764

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=6.4e-11  Score=86.35  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=85.0

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCc------cc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGV------YT   84 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~------~~   84 (207)
                      ++++++++.+..+|.+.+.+++++.++|++           .+.++.+++ +..|...  ...... .....      +.
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~-----------~~~~~~Giv-~~~dl~~--~~~~~~-~~~~~~~~~~~~~   66 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVD-----------ENGKVVDVY-SRFDVIN--LAKEGA-YNNLDLTVGEALE   66 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEEC-----------CCCeEEEEE-eHHHHHH--HHhcCc-cccccCCHHHHHh
Confidence            467889999999999999999999999996           456677777 7777211  111110 00001      12


Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      ....|..  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        67 ~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          67 RRSQDFE--GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             hcccCCC--CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            2334555  6889999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.17  E-value=1.3e-10  Score=84.89  Aligned_cols=115  Identities=21%  Similarity=0.305  Sum_probs=88.1

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc-------CCCCCc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA-------APSSGV   82 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~-------~~~~~~   82 (207)
                      -++++++++.+..++...+.+.+..+++|++           +...+.+++ +..|... .+.....       ......
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~Giv-~~~~l~~-~~~~~~~~~~~~~~~~~~~~   68 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVD-----------GDRRLVGIV-TQRDLLR-HARPDGRRPLRGRLRGRDKP   68 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEEC-----------CCCCEEEEE-EHHHHHh-hhcccccchhhhhhhccccc
Confidence            3567889999999999999999999998886           345566666 5555210 0000000       001234


Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      .++.++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+++
T Consensus        69 ~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          69 ETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            478999988  8999999999999999999999999999998899999999999975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.16  E-value=1.6e-10  Score=98.91  Aligned_cols=96  Identities=19%  Similarity=0.118  Sum_probs=82.4

Q ss_pred             cccccccccccCC--ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        82 ~~~v~~vm~~~~~--~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      ..+|+++|.+  +  ++++++++++.++++.|.+++...+||+|++|+++|+|+.+|+.+.....               
T Consensus       196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~---------------  258 (321)
T PRK11543        196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG---------------  258 (321)
T ss_pred             HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC---------------
Confidence            4679999999  7  99999999999999999999999999999899999999999998643110               


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                   .....++.++|+++++++.+++++.++++.|.+++
T Consensus       259 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  293 (321)
T PRK11543        259 -------------GALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRK  293 (321)
T ss_pred             -------------CCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcC
Confidence                         01235688999999999999999999999998764

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.16  E-value=1.3e-10  Score=99.65  Aligned_cols=111  Identities=16%  Similarity=0.170  Sum_probs=92.4

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..+|++.+.+++.++++|++           +..++.|++ +..|..  +.....  ......+++++|+
T Consensus       213 ~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd-----------~~g~lvGiv-t~~Dl~--~~~~~~--~~~~~~~v~~im~  276 (326)
T PRK10892        213 EIPHVSKTASLRDALLEITRKNLGMTVICD-----------DNMKIEGIF-TDGDLR--RVFDMG--IDLRQASIADVMT  276 (326)
T ss_pred             CCeEECCCCCHHHHHHHHHhcCCCeEEEEc-----------CCCcEEEEE-ecHHHH--HHHhcC--CCcccCCHHHhcC
Confidence            677899999999999999999999988886           566788888 888831  222221  1223457999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      +  ++.++.+++++.++++.|.+++++++||++ +|+++|+||.+|++++
T Consensus       277 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        277 P--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             C--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            9  999999999999999999999999999998 6899999999999974

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.15  E-value=2.4e-10  Score=82.22  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=86.1

Q ss_pred             ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccccc
Q 028558           13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK   92 (207)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~   92 (207)
                      ++++++.+..++.+.+.+.+..++++++           +..+..+++ +..|..  +.+...   .....++.++|.+ 
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d-----------~~~~~~G~v-~~~dl~--~~~~~~---~~~~~~v~~~~~~-   66 (113)
T cd04607           5 LLVSPDASILDALRKIDKNALRIVLVVD-----------ENGRLLGTV-TDGDIR--RALLKG---LSLDDPVSEVMNR-   66 (113)
T ss_pred             eEECCCCCHHHHHHHHHhcCcCEEEEEC-----------CCCCEEEEE-EcHHHH--HHHhcC---CCcCCCHHHhhcC-
Confidence            4788899999999999888999999986           455666777 666621  111111   1113468899988 


Q ss_pred             CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        93 ~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                       .+.++++++++.++++.|.+++.+.+||++++|+++|+||.+|++.
T Consensus        67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          67 -NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             -CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence             8999999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=2.1e-10  Score=82.75  Aligned_cols=111  Identities=14%  Similarity=0.209  Sum_probs=87.3

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .+.++.++.+..++.+.+.+++.++++|++           +. .++.++. +..|.. ..+...  .......++.++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~~G~v-~~~dl~-~~~~~~--~~~~~~~~v~~~~   66 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEK-----------RRESDAYGIV-TMRDIL-KKVVAE--GRDPDRVNVYEIM   66 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEE-----------CCCCcEEEEE-ehHHHH-HHHHhC--CCCCCccCHHHHh
Confidence            355788999999999999989999999886           44 5666777 666621 111111  1122345788999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      .+  ++.++++++++.++++.|.+++...+||+|+ |+++|+|+..|+++
T Consensus        67 ~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          67 TK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             cC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            88  8999999999999999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.13  E-value=2e-10  Score=82.32  Aligned_cols=111  Identities=20%  Similarity=0.275  Sum_probs=87.2

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +++++.++.+..++.+.+.+++.+.++|++           + .+..+++ +..|... .....+  ......++.++|.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-----------~-~~~~G~v-~~~dl~~-~~~~~~--~~~~~~~v~~i~~   65 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD-----------G-NKLVGIF-TSKDIAL-RVVAQG--LDPESTLVERVMT   65 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE-----------C-CEEEEEE-EhHHHHH-HHHhcC--CCcCcCCHHHhcC
Confidence            566788999999999999889998998885           4 5566777 6666311 111111  1111257889998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++++++++.++++.|.+++.+++||++++|+++|+|+.+|++.
T Consensus        66 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          66 P--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             C--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            8  8999999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.13  E-value=1.6e-10  Score=103.84  Aligned_cols=109  Identities=20%  Similarity=0.187  Sum_probs=92.6

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .++++++++.+..+|.+.|.++++++++|++           ++.++.+++ +..|...       ..   ...+++++|
T Consensus        97 ~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD-----------~~gklvGIV-T~rDL~~-------~~---~~~~V~diM  154 (479)
T PRK07807         97 DTPVTLSPDDTVGDALALLPKRAHGAVVVVD-----------EEGRPVGVV-TEADCAG-------VD---RFTQVRDVM  154 (479)
T ss_pred             cCCeEECCCCCHHHHHHHHHhcCCceEEEEC-----------CCCeEEEEE-eHHHHhc-------Cc---cCCCHHHhc
Confidence            4567999999999999999999999999996           555677888 7666311       01   123699999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~  142 (207)
                      ++  +++++++++++.++++.|.+++++++||+|++|+++|+||.+||++...
T Consensus       155 t~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        155 ST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             cC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            99  9999999999999999999999999999998899999999999998653

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.13  E-value=2.9e-10  Score=100.58  Aligned_cols=103  Identities=18%  Similarity=0.239  Sum_probs=84.8

Q ss_pred             hhhhhccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCC
Q 028558           70 TLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGR  148 (207)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~  148 (207)
                      .++.+.+  .+++.+|+++|+|+.++.+++.++++.++++.+.+++++++||++++ ++++|+|+.+|++....      
T Consensus       180 ~~i~~vl--~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~------  251 (408)
T TIGR03520       180 KILQGIV--SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN------  251 (408)
T ss_pred             HHHHHHh--ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc------
Confidence            3444433  46778999999998889999999999999999999999999999854 68999999999986320      


Q ss_pred             CCCCCCCcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                               ....++.++|+ ++.++++++++.++++.|.++
T Consensus       252 -------------------------~~~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~  283 (408)
T TIGR03520       252 -------------------------KKNFDWQSLLR-EPYFVPENKKLDDLLRDFQEK  283 (408)
T ss_pred             -------------------------cCCCCHHHHcC-CCeEeCCCCcHHHHHHHHHhc
Confidence                                     01234677875 678999999999999999875

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=1.1e-10  Score=86.02  Aligned_cols=114  Identities=17%  Similarity=0.156  Sum_probs=85.3

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhh---hhhhccCCCCCcccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGT---LTANSAAPSSGVYTVGD   87 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~---~~~~~~~~~~~~~~v~~   87 (207)
                      +++++.++.+..+|.+.+.+++.+.++|++           ...++.|++ +..|.....   .+..+ .......++++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d-----------~~~~~~Giv-~~~dl~~~~~~~~~~~~-~~~~~~~~v~~   68 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVD-----------SDDNFIGVI-TAVDLLGEEPIKRIQEG-GISRSELTVAD   68 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEc-----------CCCcEEEEE-EHHHHhhChhhHHHHHc-CCCchheEHHH
Confidence            456888999999999999989999999996           455667777 666631111   11111 01123456899


Q ss_pred             cccccCCceEE------CCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHh
Q 028558           88 FMTTKEELHVV------KPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA  139 (207)
Q Consensus        88 vm~~~~~~~~v------~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~  139 (207)
                      +|.+  ++..+      .+++++.++++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus        69 im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          69 VMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            9987  54433      268899999999999999999999976 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.12  E-value=2e-10  Score=82.75  Aligned_cols=110  Identities=21%  Similarity=0.245  Sum_probs=84.0

Q ss_pred             cccccCCCCCCcccccccccC-CCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQ-LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~-v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +.+++++.+..+|.+.+.+++ .+.++|++           +..++.+++ +..|...  ....    .....++.++|.
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~dl~~--~~~~----~~~~~~v~~~~~   64 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVVD-----------NEGRYVGII-SLADLRA--IPTS----QWAQTTVIQVMT   64 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEEc-----------CCCcEEEEE-EHHHHHH--HHHh----hccccchhhhhc
Confidence            457788999999998887665 88888886           455667777 6666211  1111    112346889998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +...+.++.+++++.++++.|.+++.+++||+|++|+++|+++.+|+++
T Consensus        65 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          65 PAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            6324678999999999999999999999999997789999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.12  E-value=2.3e-10  Score=81.83  Aligned_cols=109  Identities=17%  Similarity=0.104  Sum_probs=84.7

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      +.+++++++.+..+|.+.|.+.+.+++++++           +. .+..++. +..|..  +......    ....+.++
T Consensus         1 ~~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~-----------~~~~~~~G~v-~~~~l~--~~~~~~~----~~~~~~~~   62 (111)
T cd04590           1 TDIVALDADDTLEEILELIAESGHSRFPVYD-----------GDLDNIIGVV-HVKDLL--RALAEGE----EDLDLRDL   62 (111)
T ss_pred             CceEEEcCCCCHHHHHHHHhhCCCceEEEEC-----------CCCceEEEEE-EHHHHH--HHHHcCC----CcCCHHHH
Confidence            3467889999999999999999999999986           44 5666777 666621  1111111    11345666


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      | .  ++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+.+
T Consensus        63 ~-~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          63 L-R--PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             h-c--CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            5 4  5789999999999999999999999999998899999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.12  E-value=2.5e-10  Score=97.66  Aligned_cols=111  Identities=16%  Similarity=0.195  Sum_probs=91.8

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..+|++.+.+++.++++|++           +++++.|++ +..|..  +.+...   .....+++++|+
T Consensus       208 ~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd-----------~~g~~iG~v-t~~dl~--~~~~~~---~~~~~~v~~im~  270 (321)
T PRK11543        208 AIPQVALTASVMDAMLELSRTGLGLVAVCD-----------AQQQVQGVF-TDGDLR--RWLVGG---GALTTPVNEAMT  270 (321)
T ss_pred             CCcEeCCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCcEEEEe-cHHHHH--HHHhCC---CCcCCcHHHhcC
Confidence            467899999999999999999999999996           566777888 776631  111111   112346899999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      +  ++.++.+++++.++++.|.+++..++||+|++|+++|+||.+|++++
T Consensus       271 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        271 R--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             C--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            9  89999999999999999999999999999988899999999999975

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.12  E-value=3.1e-10  Score=94.53  Aligned_cols=95  Identities=31%  Similarity=0.303  Sum_probs=82.1

Q ss_pred             ccccccccccCC-ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           83 YTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        83 ~~v~~vm~~~~~-~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      ++|+++|.+  + +.++++++++.++++.|.+.+++.+||+|++|+++|+|+..|+.+.... +                
T Consensus       155 ~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-~----------------  215 (268)
T TIGR00393       155 VKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-G----------------  215 (268)
T ss_pred             hhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-C----------------
Confidence            688999998  7 9999999999999999999999999999988999999999999874310 0                


Q ss_pred             hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                 .....++.++|.++++++.+++++.+++++|.+++
T Consensus       216 -----------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  250 (268)
T TIGR00393       216 -----------GSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRK  250 (268)
T ss_pred             -----------CcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcC
Confidence                       01345688999999999999999999999998764

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=2.9e-10  Score=83.25  Aligned_cols=112  Identities=12%  Similarity=0.084  Sum_probs=84.3

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCC----CC---Cc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAP----SS---GV   82 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~----~~---~~   82 (207)
                      |+.+++++.+..+|.+.+.++++.+++|++           .. .++.+++ +..|...  .+......    ..   ..
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d-----------~~~~~~~Giv-~~~dl~~--~~~~~~~~~~~~~~~~~~~   67 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTE-----------EESGEVIGIL-SQRRLVE--FLWENARSFPGLDPLYPIP   67 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEe-----------CCCCcEEEEE-EHHHHHH--HHHHhHHhccchhhhhhhh
Confidence            566788999999999999989999999986           43 5666777 6666211  11110000    00   01


Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHH
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~  138 (207)
                      ..+.++|.+  ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+.
T Consensus        68 ~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          68 LRDLTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             hhhcccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            123457877  899999999999999999999999999999889999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.11  E-value=3.6e-10  Score=95.73  Aligned_cols=99  Identities=23%  Similarity=0.367  Sum_probs=81.9

Q ss_pred             CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (207)
Q Consensus        79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~  157 (207)
                      .+...+|+++|+++.++.++++++++.++++.+.+++++++||++++ ++++|+|+.+|++.....              
T Consensus        63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~--------------  128 (292)
T PRK15094         63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS--------------  128 (292)
T ss_pred             ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc--------------
Confidence            46778999999997779999999999999999999999999999865 789999999999863210              


Q ss_pred             cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                     ......+.++|. +++++++++++.++++.|.+++
T Consensus       129 ---------------~~~~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~  162 (292)
T PRK15094        129 ---------------DAEAFSMDKVLR-QAVVVPESKRVDRMLKEFRSQR  162 (292)
T ss_pred             ---------------cCCcCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcC
Confidence                           001234678885 5568999999999999998753

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.10  E-value=4.1e-10  Score=81.29  Aligned_cols=110  Identities=16%  Similarity=0.224  Sum_probs=86.4

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +.+++++.+..++.+.+.+.+...++|++           +..++.+++ +..|..  +.+..  .......+++++|.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~dl~--~~~~~--~~~~~~~~~~~~~~~   66 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVVD-----------RDGGVVGII-TLPDLL--RALEA--DEAGEPSAVDEVATP   66 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEEc-----------CCCCEEEEE-EHHHHH--HHHhc--ccccccccHHHhccC
Confidence            45778899999999999999999999996           456667777 665621  11111  111122347889988


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC--CcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~--g~lvGiVt~~dl~~  139 (207)
                        ++.++.+++++.++++.|.+++.+.+||+|++  |+++|+||.+|+++
T Consensus        67 --~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          67 --PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             --CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence              89999999999999999999999999999976  79999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=9.2e-10  Score=79.37  Aligned_cols=88  Identities=20%  Similarity=0.233  Sum_probs=72.4

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (207)
                      ++.++.+++++.++++.|.+++++.+||+|++ |+++|+++.+|+++.+...+.                          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~--------------------------   55 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR--------------------------   55 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC--------------------------
Confidence            67899999999999999999999999999987 899999999999874311000                          


Q ss_pred             hhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      .....++.++|.++++++++++++.+++++|.+++
T Consensus        56 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~   90 (114)
T cd04630          56 DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTN   90 (114)
T ss_pred             CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcC
Confidence            01234688899888999999999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=9.1e-10  Score=79.56  Aligned_cols=88  Identities=25%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      .+.++++++++.++++.|.+++...+||+|++|+++|+|+.+|+.+......                          ..
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~--------------------------~~   55 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCG--------------------------GP   55 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcC--------------------------CC
Confidence            3678899999999999999999999999998999999999999987431000                          01


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++.+++++.++++.|.+++
T Consensus        56 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~   89 (114)
T cd04619          56 GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRG   89 (114)
T ss_pred             cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcC
Confidence            1345688999889999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.10  E-value=9.3e-10  Score=79.24  Aligned_cols=85  Identities=19%  Similarity=0.197  Sum_probs=71.7

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+.+...  .                           .
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~--~---------------------------~   52 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP--N---------------------------D   52 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc--c---------------------------c
Confidence            4678899999999999999999999999998899999999999986310  0                           0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|..++.++.+++++.+++++|.+++
T Consensus        53 ~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~   86 (111)
T cd04603          53 YETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETE   86 (111)
T ss_pred             ccccChhheeecCCcEECCCCcHHHHHHHHHHcC
Confidence            1234688899888899999999999999998874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.09  E-value=8.5e-11  Score=86.81  Aligned_cols=112  Identities=14%  Similarity=0.114  Sum_probs=87.4

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..++.+.+.++++.++.|++           +..++.|++ +..|... ......   .....+++++|+
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd-----------~~~~~~Gii-~~~dl~~-~~~~~~---~~~~~~v~~im~   66 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVD-----------ESGKILGMV-TLGNLLS-SLSSGK---VQPSDPVSKALY   66 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCCEEEEE-EHHHHHH-HHHHhc---cCCCCcHHHHhh
Confidence            466889999999999999999999999996           455667777 6666211 111111   123458999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHH---------HcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           91 TKEELHVVKPTTTVDEALEILV---------EKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~---------~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      +  ++.++.+++++.++.+++.         +.+.+++||++++|+++|+||.+|++++
T Consensus        67 ~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          67 K--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             c--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            9  9999999999999999653         3367889999988999999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.09  E-value=1.2e-09  Score=78.04  Aligned_cols=83  Identities=25%  Similarity=0.450  Sum_probs=71.0

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++...+||+|++|+++|+++.+++++...                               
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~-------------------------------   51 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA-------------------------------   51 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-------------------------------
Confidence            6788999999999999999999999999998899999999999986421                               


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.+++.++.+++++++++++|.+++
T Consensus        52 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   85 (110)
T cd04605          52 RDKKSVEDIMTRNVITATPDEPIDVAARKMERHN   85 (110)
T ss_pred             hCccCHHHhcCCCCeEECCCCcHHHHHHHHHHhC
Confidence            0112477888888999999999999999998753

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.09  E-value=4.5e-10  Score=79.69  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=84.3

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..+|...+.+.+.+.++|++           ...+..+++ +..|...      ...     .+++++|.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d-----------~~g~~~Giv-~~~dl~~------~~~-----~~~~~~~~   58 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVD-----------ADGQPLGFV-TRREAAR------ASG-----GCCGDHAE   58 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEEC-----------CCCCEEEEE-eHHHHHH------hcc-----cchhhhcc
Confidence            456788899999999999889999998886           445566777 6655211      001     14778998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  .+..+.+++++.++++.|.+++...+||+|++|+++|+|+.+++.+
T Consensus        59 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          59 P--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             c--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            8  7888999999999999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.08  E-value=4.1e-10  Score=80.43  Aligned_cols=105  Identities=21%  Similarity=0.267  Sum_probs=85.1

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++.++.++.+..+|...+.+.+...++|++           ...++.+++ +..+..      ..    ....+++++|.
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~~l~------~~----~~~~~v~~~~~   60 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD-----------EKNKVVGIV-TSKDVA------GK----DPDTTIEKVMT   60 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEEC-----------CCCeEEEEe-cHHHHh------cc----cccccHHHHhc
Confidence            356778889999999999888888888886           445566666 554521      00    11346889998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++++++++.++++.|.+++.+.+||++++|+++|+++..|+.+
T Consensus        61 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          61 K--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             C--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            8  8999999999999999999999999999998899999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=5e-10  Score=80.34  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=86.4

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      ...+.++.+..++.+.+.+.+.++++|++           +..+..+++ +..|... ....   .......++.++|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd-----------~~~~~~G~v-~~~dl~~-~~~~---~~~~~~~~i~~~~~~   66 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVD-----------DKKRLVGII-TRYDVLS-YALE---SEELKDAKVREVMNS   66 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEc-----------CCCCEEEEE-EHHHHHH-hhhh---hhhhcCCcHHHhccC
Confidence            44678888889999999999999998886           445666777 6666211 0111   111233568899988


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++++++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        67 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          67 --PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             --CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence              8999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.08  E-value=9.7e-10  Score=78.48  Aligned_cols=81  Identities=26%  Similarity=0.327  Sum_probs=71.2

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+..++....                                
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~--------------------------------   50 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD--------------------------------   50 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc--------------------------------
Confidence            688999999999999999999999999999889999999999997521                                


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                       ...++.++|.+++.++++++++.+++++|.+++
T Consensus        51 -~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~   83 (108)
T cd04596          51 -PDTTIEKVMTKNPITVNPKTSVASVAHMMIWEG   83 (108)
T ss_pred             -ccccHHHHhcCCCeEECCCCCHHHHHHHHHHcC
Confidence             234688888888999999999999999998653

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=5.2e-10  Score=78.89  Aligned_cols=94  Identities=22%  Similarity=0.295  Sum_probs=77.8

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +++++.++.+..+|.+.|.+++++.++|++           ...+..|++ +..|.      ...               
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d-----------~~~~~~Giv-~~~dl------~~~---------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLD-----------DDGKLSGII-TERDL------IAK---------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEEC-----------CCCCEEEEE-EHHHH------hcC---------------
Confidence            466789999999999999999999999996           455666777 55552      000               


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      .  .+.++.+++++.++++.|.+++.+++||++++|+++|+||.+|+++
T Consensus        49 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          49 S--EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             C--CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            1  2688999999999999999999999999998799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.07  E-value=4.6e-10  Score=79.80  Aligned_cols=105  Identities=17%  Similarity=0.290  Sum_probs=84.3

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +.+++++.++.++...+.+.+..++.|++           +..+..+++ +..|...  ...       ...++.++|.+
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-----------~~~~~~G~v-~~~dl~~--~~~-------~~~~v~~~~~~   62 (109)
T cd04583           4 PVTITPDRTLAEAIKLMRDKKVDSLLVVD-----------KDNKLLGIV-SLESLEQ--AYK-------EAKSLEDIMLE   62 (109)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCceEEEEc-----------CCCcEEEEE-EHHHHHH--Hhh-------cCCcHhHhhcC
Confidence            44678888999999999888999999886           445566777 5555211  100       11357889988


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        .+.++++++++.++++.|.+++.+++||++++|+++|++|.+|+++
T Consensus        63 --~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          63 --DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             --CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence              8999999999999999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=1.9e-09  Score=77.02  Aligned_cols=88  Identities=26%  Similarity=0.402  Sum_probs=72.5

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.++.++.++++.|.+++++.+||+|++++++|+++.+|+++.......                          .
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~--------------------------~   55 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA--------------------------S   55 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC--------------------------C
Confidence            67889999999999999999999999999988999999999999875311000                          0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.+++.++.+++++.+++++|.+.+
T Consensus        56 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~   89 (113)
T cd04623          56 ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERR   89 (113)
T ss_pred             ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcC
Confidence            1134688899888999999999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.07  E-value=9.7e-10  Score=81.13  Aligned_cols=85  Identities=28%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++++++||+|++|+++|+++.+|+++......                           .
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~---------------------------~   55 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK---------------------------V   55 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---------------------------c
Confidence            6789999999999999999999999999998899999999999986431100                           1


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhh
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHS  205 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~  205 (207)
                      ....++.++|.+++.++.+++++.+++++|..
T Consensus        56 ~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~   87 (124)
T cd04608          56 QPSDPVSKALYKQFKRVNKNDTLGKLSRILET   87 (124)
T ss_pred             CCCCcHHHHhhccceecCCCCCHHHHHhhccc
Confidence            24568999999999999999999999997643

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=1.3e-09  Score=78.40  Aligned_cols=92  Identities=23%  Similarity=0.212  Sum_probs=73.1

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      +++++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+.+.......            ..+          ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~------------~~~----------~~   59 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN------------LDL----------ER   59 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc------------hhH----------HH
Confidence            67899999999999999999999999999988999999999999875311000            000          00


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.+.++++.+++++.+++++|.+++
T Consensus        60 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~   93 (116)
T cd04643          60 LVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP   93 (116)
T ss_pred             HhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC
Confidence            0145688899888999999999999999997653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.06  E-value=4e-10  Score=81.40  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=83.7

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc---CCceeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS---SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD   87 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~---~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~   87 (207)
                      ++++++++.+..++.+.+.+++.++++|++           .   ..++.+++ +..|....    .     .....+++
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~~~~G~v-~~~dl~~~----~-----~~~~~v~~   61 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTE-----------DGKSGGKLLGIV-TSRDIDFL----T-----DSETPLSE   61 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEee-----------CCCcCCEEEEEE-EhHHhhhh----h-----ccCCCHHH
Confidence            445778888999999999888999999885           3   45667777 65552110    0     01235889


Q ss_pred             cccccCCceEECC--CCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           88 FMTTKEELHVVKP--TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        88 vm~~~~~~~~v~~--~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +|.+  ...++..  ++++.++++.|.+++.+.+||++++|+++|+||.+|+.+
T Consensus        62 ~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          62 VMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             hcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            9988  7777755  999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.06  E-value=5.4e-10  Score=102.87  Aligned_cols=99  Identities=20%  Similarity=0.211  Sum_probs=83.8

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      .+.++++|+|++  ++.++++++++.++.+.|.+++.+.+||+|++|+++|+|+.+|+.+......              
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~--------------  507 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR--------------  507 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc--------------
Confidence            456789999999  8999999999999999999999999999998899999999999987421000              


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                   ...+.++.++|+++++++++++++.+++++|.+++
T Consensus       508 -------------~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~  542 (574)
T PRK01862        508 -------------DTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQ  542 (574)
T ss_pred             -------------ccccchHHHhccCCCeeECCCCCHHHHHHHHHhcC
Confidence                         01235688999999999999999999999998764

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.06  E-value=7.3e-10  Score=79.13  Aligned_cols=108  Identities=16%  Similarity=0.236  Sum_probs=84.9

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +++++.++.+..++.+.+.+.++++++|++           + .+..+++ +..|...  .....    ....++.++|.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~-~~~~G~v-~~~~l~~--~~~~~----~~~~~v~~~~~   62 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVD-----------D-GKLVGIV-TLSDIAH--AIARG----LELAKVKDVMT   62 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEee-----------C-CEEEEEE-EHHHHHH--HHhcc----ccccCHHHHhc
Confidence            345778888999999999999999999886           4 4556666 5555211  11111    11246888998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++++++++.++++.|.+.+.+.+||++++|+++|+|+.+|+++
T Consensus        63 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          63 K--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             C--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            8  8999999999999999999999999999998799999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.06  E-value=6.1e-10  Score=79.62  Aligned_cols=107  Identities=27%  Similarity=0.381  Sum_probs=85.6

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      |+++++++.+..++.+.+.+.+.++++|++           + ....+++ +..|..  +....    .....++.++|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-----------~-~~~~G~v-~~~dl~--~~~~~----~~~~~~~~~~~~   63 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVE-----------G-GRVVGII-SRRDVE--KALRH----GLGHAPVKDYMS   63 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEee-----------C-CEEEEEE-EHHHHH--HHHhc----ccccCcHHHHhc
Confidence            566788888999999999888999999986           3 5556666 555521  11111    113457889999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++++++++.++++.|.+++.+.+||++ +|+++|+||.+|+++
T Consensus        64 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          64 T--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             C--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            8  899999999999999999999999999999 789999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.06  E-value=3.4e-10  Score=101.28  Aligned_cols=108  Identities=14%  Similarity=0.174  Sum_probs=86.1

Q ss_pred             cccccccCCCCCCcccccccc-----cCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFA-----LQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT   84 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~-----~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~   84 (207)
                      ..+++++++.+..+|.+.+.+     +++..+.|++           +..++.|++ +-.|.      ..+    ....+
T Consensus       139 ~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd-----------~~~~l~GvV-~l~dL------l~a----~~~~~  196 (449)
T TIGR00400       139 IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTN-----------ESKHLKGVL-SIRDL------ILA----KPEEI  196 (449)
T ss_pred             CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEEC-----------CCCeEEEEE-EHHHH------hcC----CCCCc
Confidence            456788999999998888754     4566677775           556677777 55552      111    12346


Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++++|++  ++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++..
T Consensus       197 v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l  251 (449)
T TIGR00400       197 LSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVI  251 (449)
T ss_pred             HHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHH
Confidence            9999999  899999999999999999999999999999889999999999999754

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=2e-09  Score=78.26  Aligned_cols=87  Identities=26%  Similarity=0.262  Sum_probs=71.9

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|..++.+.+||+|++|+++|+|+..|+.+......                           .
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~---------------------------~   54 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA---------------------------D   54 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC---------------------------C
Confidence            5789999999999999999999999999998899999999999987531000                           0


Q ss_pred             hcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.+  +++++++++++.+++++|.+++
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   90 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQ   90 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcC
Confidence            124567788874  6889999999999999998864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.05  E-value=1.6e-09  Score=76.88  Aligned_cols=70  Identities=26%  Similarity=0.280  Sum_probs=62.4

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (207)
                      ++.++++++++.++.+.|.+++++.+||+|++ |+++|+||.+|+.+..                               
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------------   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------------   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence            57899999999999999999999999999974 8999999999998631                               


Q ss_pred             hhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                        .           ++++.+++++.+++++|.+++
T Consensus        51 --~-----------~~~v~~~~~l~~a~~~m~~~~   72 (98)
T cd04618          51 --R-----------LVSIHPERSLFDAALLLLKNK   72 (98)
T ss_pred             --e-----------eEEeCCCCcHHHHHHHHHHCC
Confidence              1           778999999999999998864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.05  E-value=1.6e-09  Score=77.50  Aligned_cols=87  Identities=30%  Similarity=0.397  Sum_probs=72.7

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|+.+......                           .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~   54 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS---------------------------L   54 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence            6788999999999999999999999999998899999999999986431000                           0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.+++.++++++++.++++.|.+++
T Consensus        55 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~   88 (114)
T cd04613          55 YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSD   88 (114)
T ss_pred             cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCC
Confidence            1225688999999999999999999999997653

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.05  E-value=6.9e-10  Score=81.61  Aligned_cols=112  Identities=13%  Similarity=0.154  Sum_probs=82.4

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCC-CC----------
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAP-SS----------   80 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~-~~----------   80 (207)
                      +++++++.+..+|.+.|.++++.+++|++           +.....+++ +..|...  ........ ..          
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d-----------~~~~~~Giv-~~~dl~~--~~~~~~~~~~~~~~~~~~~~~   68 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKNNISGLPVVD-----------EKGKLIGNI-SASDLKG--LLLSPDDLLLYRTITFKELSE   68 (126)
T ss_pred             eEEECCCccHHHHHHHHHHhCCCcccEEC-----------CCCcEEEEE-EHHHhhh--hhcCcchhhcccchhhhhhhh
Confidence            45788999999999999999999999886           445566666 6555211  11000000 00          


Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      ......+.|..  ++.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          69 KFTDSDGVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             hcccccccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            00123356777  8999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.05  E-value=9.1e-10  Score=98.95  Aligned_cols=91  Identities=22%  Similarity=0.260  Sum_probs=80.7

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      .++++++|.+  ++.++++++++.++++.|.+++++.+||+|++++++|+||.+|+....                    
T Consensus        88 ~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~--------------------  145 (479)
T PRK07807         88 WVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD--------------------  145 (479)
T ss_pred             hccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc--------------------
Confidence            3467899999  999999999999999999999999999999889999999999996420                    


Q ss_pred             hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                   ...++.++|+++++++++++++.+++++|.+++
T Consensus       146 -------------~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~  178 (479)
T PRK07807        146 -------------RFTQVRDVMSTDLVTLPAGTDPREAFDLLEAAR  178 (479)
T ss_pred             -------------cCCCHHHhccCCceEECCCCcHHHHHHHHHhcC
Confidence                         224688999999999999999999999998764

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.05  E-value=1.1e-09  Score=78.22  Aligned_cols=107  Identities=17%  Similarity=0.300  Sum_probs=86.1

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +++++.++.+..++.+.+.+++.++++|++           +..+..+++ +..+..  +.+...      ...+.++|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~~l~--~~~~~~------~~~~~~~~~   62 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVD-----------EDGRLVGIV-TSWDIS--KAVARD------KKSVEDIMT   62 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEEC-----------CCCcEEEEE-eHHHHH--HHHhhC------ccCHHHhcC
Confidence            556788999999999999999999999986           455666777 655521  111111      124888998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++++++++.++++.|.+++.+.+||++++|+++|+|+..|+.+
T Consensus        63 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          63 R--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             C--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            8  8999999999999999999999999999998899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.04  E-value=6e-10  Score=100.65  Aligned_cols=112  Identities=21%  Similarity=0.212  Sum_probs=91.6

Q ss_pred             ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccccc
Q 028558           13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK   92 (207)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~   92 (207)
                      .+++|+.+..+|.+.+.+++.++++|++.+        ..+.++.+++ |..|....        ......+|+++|++.
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~--------~~~gkLvGIV-T~~DLr~~--------~~~~~~~V~dIMt~~  170 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDG--------TAHGKLLGIV-TSRDYRIS--------RMSLDTKVKDFMTPF  170 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCC--------CcCCEEEEEE-EcHHhhcc--------ccCCCCCHHHHhCCC
Confidence            488999999999999999999999999610        0146788888 87773110        112345799999964


Q ss_pred             CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        93 ~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++..
T Consensus       171 ~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        171 EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            3788999999999999999999999999999889999999999999854

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.04  E-value=2.5e-09  Score=80.32  Aligned_cols=98  Identities=23%  Similarity=0.211  Sum_probs=70.4

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|++++.........   ..  ....|           .
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~---~~--~~~~~-----------~   65 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRV---QP--EDETK-----------Q   65 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhcccccc---cc--chhhc-----------c
Confidence            68899999999999999999999999999988999999999999986422111000   00  00000           0


Q ss_pred             hcCCccccc---------ccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDL---------MTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~i---------m~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ...+.+.++         |.++++++.+++++.+++++|.+++
T Consensus        66 ~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~  108 (133)
T cd04592          66 TNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKG  108 (133)
T ss_pred             cccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcC
Confidence            011223334         3567899999999999999998874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.04  E-value=2.5e-09  Score=77.13  Aligned_cols=87  Identities=26%  Similarity=0.243  Sum_probs=72.2

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++......                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------~   54 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------A   54 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence            5778899999999999999999999999998899999999999987431100                           0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.+.++++.+++++.+++++|.+++
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~   88 (115)
T cd04593          55 GEPSAVDEVATPPLLTVHPDEPLAHALDRMASRG   88 (115)
T ss_pred             cccccHHHhccCCceEECCCCCHHHHHHHHHHcC
Confidence            1233477888888999999999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=2e-09  Score=77.02  Aligned_cols=86  Identities=21%  Similarity=0.258  Sum_probs=72.2

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|+.+....                            ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~----------------------------~~   53 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLF----------------------------ES   53 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhh----------------------------cc
Confidence            57889999999999999999999999999988999999999999864210                            00


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++.+++++.++++.|.+++
T Consensus        54 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~   87 (111)
T cd04626          54 FLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQ   87 (111)
T ss_pred             cccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcC
Confidence            1234678889889999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=7.1e-10  Score=79.82  Aligned_cols=110  Identities=17%  Similarity=0.185  Sum_probs=84.3

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCC---Cccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSS---GVYTVGDF   88 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~---~~~~v~~v   88 (207)
                      +++++++.+..++.+.+.+++++.++|++           +..+..+++ +..|..  +.+........   ...+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~Giv-~~~dl~--~~~~~~~~~~~~~~~~~~v~~~   68 (116)
T cd04643           3 VAYVQDTNTLRHALLVLTKHGYSAIPVLD-----------KEGKYVGTI-SLTDIL--WKLKGLENLDLERLVDLKVIDV   68 (116)
T ss_pred             cEEECCCCcHHHHHHHHHHCCCceeeeEC-----------CCCcEEEEE-eHHHHH--HHhhccCchhHHHHhCCcHHHH
Confidence            56788999999999999999999999986           455666777 666621  11111100001   13568899


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      |.+  .+.++.+++++.++++.|.+++  .+||+|++|+++|++|.+|+++
T Consensus        69 ~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          69 MNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             hcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            999  8999999999999999998765  5999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=9.7e-10  Score=79.18  Aligned_cols=109  Identities=18%  Similarity=0.264  Sum_probs=83.3

Q ss_pred             cccccCCCCCCcccccccccC-CCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQ-LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~-v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +.+++++.+..++.+.+.+++ ...++|++            ..++.+++ +..|..  +.+...  ......++.++|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------~~~~~G~v-~~~dl~--~~~~~~--~~~~~~~i~~~~~   65 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDSSCVLVVE------------KGRLLGIF-TERDIV--RLTAIG--KDLSDLPIGEVMT   65 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCCceEEEcC------------CCcEEEEE-eHHHHH--HHHhcC--CCccccCHHHhcC
Confidence            456788889999999998888 67777774            34566777 666631  111111  1112346889998


Q ss_pred             ccCCceEECCC--CCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPT--TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~--~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++.++  +++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        66 ~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          66 Q--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             C--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            8  88889887  78999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=1.9e-09  Score=77.07  Aligned_cols=85  Identities=25%  Similarity=0.309  Sum_probs=72.0

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++++.|.+.+...+||++++|+++|+|+..++.+....                             .
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-----------------------------~   52 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE-----------------------------G   52 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-----------------------------c
Confidence            57889999999999999998889999999988999999999999874310                             1


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|..+++++++++++.++++.|.+++
T Consensus        53 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~   86 (111)
T cd04639          53 GPDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGG   86 (111)
T ss_pred             CCCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcC
Confidence            1234688888888999999999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.04  E-value=2.7e-09  Score=75.66  Aligned_cols=80  Identities=21%  Similarity=0.317  Sum_probs=69.4

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..|+++..                                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------------------------------   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------------------------------   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence            578899999999999999999999999999889999999999998631                                


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                        ..++.++|.+.+.++.+++++.+++++|.+++
T Consensus        50 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
T cd04582          50 --GGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHD   81 (106)
T ss_pred             --ccchhhhcccCCEEECCCCCHHHHHHHHHHCC
Confidence              12467888877888999999999999998764

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=5.3e-10  Score=80.25  Aligned_cols=111  Identities=23%  Similarity=0.293  Sum_probs=85.2

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +.+++++.+..++.+.+.+.+...++|++           +..+..+++ +..+... .+..... ......++.++|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~G~v-~~~~l~~-~~~~~~~-~~~~~~~v~~~~~~   68 (114)
T cd04629           3 PVTFTPDMSVTEAVEKLLKSKISGGPVVD-----------DNGNLVGFL-SEQDCLK-QLLESSY-HCDGVATVRDIMTT   68 (114)
T ss_pred             CeEeCCCCCHHHHHHHHHhcCCCCccEEC-----------CCCeEEEEe-ehHHHHH-Hhhhhhh-ccCCCccHHHHhcc
Confidence            45778899999999999888888888886           455666777 6655211 1111110 01123468899998


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+.+
T Consensus        69 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          69 --EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             --CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence              8999999999999999999999999999996 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=1.2e-09  Score=78.14  Aligned_cols=110  Identities=25%  Similarity=0.339  Sum_probs=85.9

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      ++++.++.+..++...+.+++...++|++           +..+..++. +..|...  .+... .......++.++|.+
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~Giv-~~~~l~~--~~~~~-~~~~~~~~~~~~~~~   67 (113)
T cd04623           3 VITVRPDATVAEAAKLMAEKNIGAVVVVD-----------DGGRLVGIF-SERDIVR--KVALR-GASALDTPVSEIMTR   67 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEEC-----------CCCCEEEEE-ehHHHHH--HHhhc-CCCccccCHHHhcCC
Confidence            45678888999999999889999999986           445666777 6666211  11111 111224578999988


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++++++++.++++.|.+++.+++||+++ |+++|+||.+|+++
T Consensus        68 --~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          68 --NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             --CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence              8999999999999999999999999999996 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.04  E-value=2.7e-09  Score=77.77  Aligned_cols=97  Identities=30%  Similarity=0.442  Sum_probs=74.0

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++.+.|.+++++.+||++++|+++|+|+.+|+.+.......           ...+    .....  .
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~-----------~~~~----~~~~~--~   65 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGR-----------RPLR----GRLRG--R   65 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhccccc-----------chhh----hhhhc--c
Confidence            78899999999999999999999999999988999999999999865321100           0000    00000  0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.+.++++.+++++.+++++|.+++
T Consensus        66 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~   99 (124)
T cd04600          66 DKPETVGDIMSPPVVTVRPDTPIAELVPLLADGG   99 (124)
T ss_pred             cccccHHHhccCCCeeeCCCCcHHHHHHHHHhcC
Confidence            1344688999889999999999999999998753

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.03  E-value=1.5e-09  Score=77.83  Aligned_cols=110  Identities=21%  Similarity=0.260  Sum_probs=85.3

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +.+++++.+..++.+.+.+.+...++|++           +.++..+++ +..+.  .+.+....  .....++.++|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-----------~~~~~~G~v-~~~~i--~~~~~~~~--~~~~~~v~~~~~~   67 (114)
T cd04604           4 LPLVSPDTSLKDALLEMSRKGLGMTAVVD-----------EDGRLVGIF-TDGDL--RRALEKGL--DILTLPVADVMTR   67 (114)
T ss_pred             ccccCCCCcHHHHHHHHHhcCccEEEEEc-----------CCCCEEEEe-chHHH--HHHHhccC--ccccCCHHHhhcc
Confidence            34678888888999888888888888886           445666676 55552  12222211  1223469999999


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++++++++.++++.|.+++...+||++++|+++|+|+..||++
T Consensus        68 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          68 --NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             --CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence              8999999999999999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.03  E-value=5.5e-10  Score=83.13  Aligned_cols=115  Identities=24%  Similarity=0.281  Sum_probs=86.4

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhh------------hccC
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTA------------NSAA   77 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~------------~~~~   77 (207)
                      -++.++.++.+..++.+.+.+.+..+++|++           +...+.+++ +..|........            ....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd-----------~~~~~~Gvi-~~~dl~~~~~~~~~~~~~~~~~~~~~~~   69 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVD-----------DDGRLVGIV-SEGDLLRRAELGTERRRARWLDLLAGAE   69 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEEC-----------CCCCEEEEe-eHHHHHHHhcccCcchhhhHHHHhcchH
Confidence            4567889999999999999999999998886           344555565 555511100000            0000


Q ss_pred             ------CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           78 ------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        78 ------~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                            ......++.++|.+  ++.++.+++++.++++.|.+++.+.+||+| +|+++|+||.+|+.+
T Consensus        70 ~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          70 ELAAAFVRSHGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHHHHHHHhcCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence                  01233578999988  899999999999999999999999999999 899999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.03  E-value=3.4e-09  Score=75.87  Aligned_cols=85  Identities=22%  Similarity=0.340  Sum_probs=71.6

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|+++.....                            .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------~   53 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------I   53 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc----------------------------C
Confidence            578899999999999999999999999999889999999999998753110                            0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                      ....++.++|.++++++.+++++.+++++|.++
T Consensus        54 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   86 (112)
T cd04624          54 DLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKN   86 (112)
T ss_pred             CCccCHHHhccCCCEEECCCCcHHHHHHHHHHc
Confidence            123467788888899999999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.03  E-value=1e-09  Score=79.84  Aligned_cols=112  Identities=24%  Similarity=0.330  Sum_probs=86.4

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCC-------CCCccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAP-------SSGVYT   84 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~-------~~~~~~   84 (207)
                      +++++++.+..++...+.+.++..++|.+           +..++.+++ +..+...  ........       .....+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~G~v-~~~~l~~--~~~~~~~~~~~~~~~~~~~~~   68 (122)
T cd04803           3 VVTLSEDDSLADAEELMREHRIRHLPVVN-----------EDGKLVGLL-TQRDLLR--AALSSLSDNGEESLTKERDVP   68 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCcccccEEC-----------CCCCEEEEE-EHHHHHH--HhccccccccccccccccCcC
Confidence            45788999999999999999999888886           345556666 6555211  11110000       123457


Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +.++|..  ++.++++++++.++++.|.+++.+.+||++++|+++|++|..|+++
T Consensus        69 v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          69 VAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             HHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            8899988  8999999999999999999999999999998789999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.03  E-value=7.8e-10  Score=80.43  Aligned_cols=114  Identities=18%  Similarity=0.235  Sum_probs=85.8

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCC-----CCCccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAP-----SSGVYTVG   86 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~-----~~~~~~v~   86 (207)
                      ++++.+..+..++.+.+.+.+..+++|++           ...++.++. +..|.............     .....++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   70 (122)
T cd04635           3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQ-----------KAGELIGII-TRRDIIRAGSVRTSVEDQQRTQTKASPTVE   70 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcccEEC-----------CCCcEEEEE-EcHHHHhhccccccccchhhhhhhccCcHH
Confidence            45788888999999999888999998886           445666666 55552111000000000     01345688


Q ss_pred             ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      ++|.+  ++..+++++++.++++.|.+++.+.+||++++|+++|++|.+|+++
T Consensus        71 ~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          71 KIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             HHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            89988  8999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.03  E-value=6.5e-10  Score=99.78  Aligned_cols=106  Identities=17%  Similarity=0.161  Sum_probs=89.5

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +.++++++.+..++++.|.++++++++|++            +.++.+++ +..|...       ..   ...+++++|+
T Consensus        97 ~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD------------~gklvGIV-T~rDL~~-------~~---~~~~V~dIMt  153 (475)
T TIGR01303        97 TPITLAPHDTVSDAMALIHKRAHGAAVVIL------------EDRPVGLV-TDSDLLG-------VD---RFTQVRDIMS  153 (475)
T ss_pred             CCeEECCCCCHHHHHHHHHhcCCeEEEEEE------------CCEEEEEE-EHHHhhc-------CC---CCCCHHHHcc
Confidence            556899999999999999999999999885            23566777 7666310       01   1246999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +  +++++++++++.+++++|.+++++++||+|++|+++|+||.+||++..
T Consensus       154 ~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       154 T--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRAT  202 (475)
T ss_pred             C--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            9  999999999999999999999999999999889999999999999865

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.02  E-value=2.4e-09  Score=76.83  Aligned_cols=89  Identities=29%  Similarity=0.331  Sum_probs=72.8

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..++++......                         ...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~-------------------------~~~   56 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESS-------------------------YHC   56 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhh-------------------------hcc
Confidence            6788999999999999999889999999998899999999999987431100                         001


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++.+++++.++++.|.+++
T Consensus        57 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~   90 (114)
T cd04629          57 DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAK   90 (114)
T ss_pred             CCCccHHHHhccCceEECCCCcHHHHHHHHHHhC
Confidence            1245688899888999999999999999998763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.02  E-value=1.1e-09  Score=78.45  Aligned_cols=109  Identities=22%  Similarity=0.316  Sum_probs=85.1

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++.+++++.+..++...+.+.+.++++|++           +..+..++. +..|...  .....   .....++.++|.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-----------~~~~~~G~v-~~~dl~~--~~~~~---~~~~~~v~~~~~   64 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKD-----------NEEKLKGVV-TFTDILD--LDLFE---SFLEKKVFNIVS   64 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEc-----------CCCCEEEEE-ehHHhHH--HHhhc---ccccCcHHHHhc
Confidence            456788999999999999999999999886           445556666 5555211  11110   111346888998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++.+++++.++++.|.+++...+||+++ |+++|+||..|++.
T Consensus        65 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          65 Q--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             C--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            8  8999999999999999999999999999996 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.02  E-value=3.1e-09  Score=76.52  Aligned_cols=85  Identities=25%  Similarity=0.255  Sum_probs=69.2

Q ss_pred             CceEECCCCCHHHHHHHHHHcC-CCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~-~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (207)
                      ++.++++++++.++++.|.+++ .+.+||+|++|+++|+|+.+|+++...                             .
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~   52 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-----------------------------S   52 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-----------------------------h
Confidence            6788999999999999997765 889999998899999999999987421                             0


Q ss_pred             hhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558          173 KTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       173 ~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      .....++.++|.+  +++++.+++++.++++.|.+++
T Consensus        53 ~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~   89 (114)
T cd04801          53 QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQG   89 (114)
T ss_pred             hccccchhhhhcccccceEECCCCcHHHHHHHHHHCC
Confidence            1123467788864  3678999999999999998864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.02  E-value=1.5e-09  Score=77.47  Aligned_cols=109  Identities=21%  Similarity=0.280  Sum_probs=84.9

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++.+++++.+..++.+.+.+.+...++|.+           + .++.++. +..|..  +......   ....+++++|.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-----------~-~~~~G~v-~~~~l~--~~~~~~~---~~~~~v~~~~~   63 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVD-----------D-GRPLGIV-TERDIL--RLLASGP---DLQTPVGEVMS   63 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEee-----------C-CEEEEEE-eHHHHH--HHHhcCC---CCCcCHHHhcC
Confidence            455778888999999999888888888885           3 4566666 555521  1111111   13457899998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+++
T Consensus        64 ~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          64 S--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             C--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            8  8999999999999999999999999999998899999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.01  E-value=1.1e-09  Score=78.39  Aligned_cols=108  Identities=18%  Similarity=0.218  Sum_probs=83.9

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      .++++++.+..++.+.+.+.+...++|++           +..+..+++ +..+..  +.+...    .....+.++|..
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~-----------~~~~~~G~v-~~~~l~--~~~~~~----~~~~~v~~~~~~   64 (111)
T cd04639           3 FETLSPADTLDDAADALLATTQHEFPVVD-----------GDGHLVGLL-TRDDLI--RALAEG----GPDAPVRGVMRR   64 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHcCCCcceEEC-----------CCCcEEEEe-eHHHHH--HHHHhc----CCCCcHHHHhcC
Confidence            34678888899999888888888888885           334566666 555521  111111    122368899988


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++++++++.++++.|.+++...+||++++|+++|++|.+|+.+
T Consensus        65 --~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          65 --DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             --CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence              8999999999999999999999999999997799999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.01  E-value=4.3e-09  Score=74.77  Aligned_cols=81  Identities=25%  Similarity=0.336  Sum_probs=70.6

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++..++++.++.++++.|.++++..+||+|++|+++|+++..|+++..                                
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~--------------------------------   50 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY--------------------------------   50 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh--------------------------------
Confidence            678899999999999999999999999999889999999999998632                                


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                      ....++.++|.+.++++++++++.+++++|.++
T Consensus        51 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   83 (109)
T cd04583          51 KEAKSLEDIMLEDVFTVQPDASLRDVLGLVLKR   83 (109)
T ss_pred             hcCCcHhHhhcCCceEECCCCcHHHHHHHHHHc
Confidence            122467788888899999999999999999774

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.01  E-value=4.4e-09  Score=75.56  Aligned_cols=86  Identities=17%  Similarity=0.218  Sum_probs=71.7

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ...++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+++.....                            .
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~   54 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------L   54 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC----------------------------C
Confidence            457889999999999999999999999999889999999999998643110                            0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.+.+.++.+++++.+++++|.+++
T Consensus        55 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~   88 (113)
T cd04607          55 SLDDPVSEVMNRNPITAKVGSSREEILALMRERS   88 (113)
T ss_pred             CcCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCC
Confidence            1234688899888899999999999999998763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.01  E-value=1.4e-09  Score=77.19  Aligned_cols=104  Identities=17%  Similarity=0.276  Sum_probs=83.1

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      .+++++++.+..++...+.+.+...+++++           + .+..++. +..|...     .     .....++++|.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-----------~-~~~~g~v-~~~~l~~-----~-----~~~~~~~~~~~   59 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVD-----------N-GKVVGIV-SARDLLG-----K-----DPDETVEEIMS   59 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeE-----------C-CEEEEEE-EHHHhhc-----c-----CccccHHHhCC
Confidence            456788899999999988878887887775           3 5566666 5545211     1     11235889998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  .+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        60 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          60 K--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             C--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            8  8999999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.00  E-value=4.6e-09  Score=76.45  Aligned_cols=94  Identities=17%  Similarity=0.224  Sum_probs=69.0

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|++..........            +  ...+..    
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~------------~--~~~~~~----   63 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNN------------L--DLTVGE----   63 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcccc------------c--cCCHHH----
Confidence            6789999999999999999999999999998899999999999997431100000            0  000000    


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                        .....+.|..+++++.+++++.+++++|.+++
T Consensus        64 --~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~   95 (120)
T cd04641          64 --ALERRSQDFEGVRTCSPDDCLRTIFDLIVKAR   95 (120)
T ss_pred             --HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcC
Confidence              00123445567789999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.00  E-value=2.1e-09  Score=96.13  Aligned_cols=98  Identities=26%  Similarity=0.272  Sum_probs=82.7

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      +..++++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++......              
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------  395 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK--------------  395 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC--------------
Confidence            455689999999  8999999999999999999999999999998899999999999987431100              


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                   .....++.++|.+++.++++++++.+++++|.++
T Consensus       396 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~  429 (454)
T TIGR01137       396 -------------ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKN  429 (454)
T ss_pred             -------------CCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHC
Confidence                         0123468899988889999999999999999765

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.00  E-value=1.8e-09  Score=77.30  Aligned_cols=110  Identities=28%  Similarity=0.360  Sum_probs=85.7

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +++++++.+..+|.+.+.+.+..+++|++           + .+..+++ +..|.. .+.....  ......++.++|.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-----------~-~~~~G~i-~~~~l~-~~~~~~~--~~~~~~~~~~~~~~   66 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDVGALPVCE-----------N-DRLVGIV-TDRDIV-VRAVAEG--RDPDTTTVGDVMTR   66 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEee-----------C-CEEEEEE-EhHHHH-HHHhhcc--CCcccCCHHHhccC
Confidence            45778899999999999999999999886           3 5566666 555521 1111111  11223358899998


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        .+.++.+++++.++++.|..++.+.+||++++|+++|+|+..|+++
T Consensus        67 --~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          67 --GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             --CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence              8999999999999999999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.00  E-value=2.5e-09  Score=76.56  Aligned_cols=109  Identities=20%  Similarity=0.256  Sum_probs=86.0

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +.+++++.+..++.+.+.+.+..+++|++           +..++.+++ +..|..  +.+...   ......+.++|.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-----------~~~~~~G~v-~~~~l~--~~~~~~---~~~~~~v~~~~~~   65 (112)
T cd04624           3 VVTVDPDTSIREAAKLMAEENVGSVVVVD-----------PDERPIGIV-TERDIV--RAVAAG---IDLDTPVSEIMTR   65 (112)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEEC-----------CCCCEEEEe-eHHHHH--HHHhcc---CCCccCHHHhccC
Confidence            45678888999999999888999999986           446666777 666621  111111   1123468899988


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus        66 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          66 --DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             --CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence              8999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.00  E-value=5.1e-09  Score=94.60  Aligned_cols=161  Identities=22%  Similarity=0.264  Sum_probs=107.6

Q ss_pred             CeeccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc---cccCCceeeeecccch-hhhhhhhhhccC
Q 028558            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL---ATSSDRVSALRRSSAV-FASGTLTANSAA   77 (207)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~---~~~~~~~~~~~~s~~d-~~~~~~~~~~~~   77 (207)
                      |-+.+|+-..+..  .+.+.....-..+..++|.+---. +.....++   -+....+.++. .... ......+..-  
T Consensus        13 dv~l~p~~~~~~~--~~~~~~t~l~~~~~~~~Piv~a~m-~~vT~~ela~ava~~GglG~i~-~~~~~e~~~~~I~~v--   86 (486)
T PRK05567         13 DVLLVPAHSEVLP--NDVDLSTQLTKNIRLNIPLLSAAM-DTVTEARMAIAMAREGGIGVIH-KNMSIEEQAEEVRKV--   86 (486)
T ss_pred             ceEecccccCcCc--ccccccchhhhhcCcCcCEEeCCC-CCcCHHHHHHHHHhCCCCCEec-CCCCHHHHHHHHHHh--
Confidence            4456676555422  345555555556666777443212 22222333   22333333333 2222 1122222221  


Q ss_pred             CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (207)
Q Consensus        78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~  157 (207)
                           ..++++|.+  ++.++++++++.++++.|.+++++.+||+|++++++|+|+.+|+....                
T Consensus        87 -----k~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~----------------  143 (486)
T PRK05567         87 -----KRSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET----------------  143 (486)
T ss_pred             -----hhhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc----------------
Confidence                 247789998  999999999999999999999999999999999999999999997421                


Q ss_pred             cchhhhHHHHHHHHhhhcCCccccccc-CCCeEecCCCCHHHHHHHHhhcC
Q 028558          158 DSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                      ....++.++|+ ++++++++++++.+++++|.+++
T Consensus       144 ----------------~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~  178 (486)
T PRK05567        144 ----------------DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHR  178 (486)
T ss_pred             ----------------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcC
Confidence                            12346888998 68899999999999999998764

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.00  E-value=1.2e-09  Score=98.93  Aligned_cols=115  Identities=11%  Similarity=0.172  Sum_probs=94.4

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc---CCceeeeecccchhhhhhhhhhccCCCCCccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS---SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVG   86 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~---~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~   86 (207)
                      .+++++.|+.+..+|.+.+.+++++.++|++           +   ..++.+++ +..|....       .  ....+|+
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD-----------~~~~~GklvGIV-T~~DL~~v-------~--~~~~~V~  166 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTE-----------TGTMGSKLLGYV-TKRDWDFV-------N--DRETKLS  166 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEe-----------CCCcCCeEEEEE-EHHHHhhc-------c--ccCCcHH
Confidence            4567899999999999999999999999996           2   25677888 77773111       0  1245799


Q ss_pred             ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccC
Q 028558           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG  145 (207)
Q Consensus        87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~  145 (207)
                      ++|++..+++++++++++.++++.|.+++.+.+||+|++++++|+||++|+.+....+.
T Consensus       167 eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~  225 (505)
T PLN02274        167 EVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPK  225 (505)
T ss_pred             HHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcC
Confidence            99998223889999999999999999999999999998899999999999998775543

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.99  E-value=4.2e-09  Score=74.42  Aligned_cols=80  Identities=28%  Similarity=0.440  Sum_probs=69.7

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++.+.+||+| +|+++|+++.+++.+..                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~--------------------------------   48 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH--------------------------------   48 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc--------------------------------
Confidence            578899999999999999999999999998 68999999999998631                                


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                       ...++.++|.++++++++++++.++++.|.+++
T Consensus        49 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   81 (105)
T cd04599          49 -PNRLVADAMTREVVTISPEASLLEAKRLMEEKK   81 (105)
T ss_pred             -ccCCHHHHccCCCEEECCCCCHHHHHHHHHHcC
Confidence             123577888889999999999999999998765

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.99  E-value=3.8e-09  Score=79.11  Aligned_cols=106  Identities=19%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHH---HHHH
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE---VQKL  170 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  170 (207)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+++........     ..++  ..|...++   ....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~   74 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNER-----GLPK--KSIKMKRKAGQKRYR   74 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhccccc-----ccch--hhhhhhhhccccccc
Confidence            678899999999999999999999999999889999999999999754211100     0000  00100000   0000


Q ss_pred             HhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       171 ~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                      .......++.++|.++++++.+++++.++++.|.++
T Consensus        75 ~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~  110 (135)
T cd04621          75 YVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEA  110 (135)
T ss_pred             ccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHc
Confidence            001124568899988899999999999999999765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.99  E-value=1.8e-09  Score=76.88  Aligned_cols=105  Identities=21%  Similarity=0.250  Sum_probs=81.6

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      .+++.++.+..++.+.+.+++...++|++           +...+.+++ +..+...      .   .....++.++|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~~l~~------~---~~~~~~v~~~~~~   62 (110)
T cd04601           4 PITVSPDATVAEALELMAEYGISGLPVVD-----------DDGKLVGIV-TNRDLRF------E---TDLDKPVSEVMTP   62 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCCceEEEEc-----------CCCEEEEEE-EhhHeee------c---ccCCCCHHHhccc
Confidence            45678888889999999888998888886           445556666 5444210      0   1123468899987


Q ss_pred             cCCceEECC-CCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKP-TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~-~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        .+..+.+ ++++.++++.|.+++.+.+||++++|+++|+||.+|+++
T Consensus        63 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          63 --ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             --CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence              6676666 999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.99  E-value=1.8e-09  Score=77.18  Aligned_cols=102  Identities=16%  Similarity=0.202  Sum_probs=78.5

Q ss_pred             ccCCCCCCcccccccccC-----CCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           15 LRAPPAGRTSGRTSFALQ-----LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~-----v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      +.++.+..++.+.+.+++     +..++|++           +..+..+++ +..+.      ...    ....+++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd-----------~~~~~~G~v-~~~~l------~~~----~~~~~v~~~~   59 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVD-----------EEGRLLGVV-SLRDL------LLA----DPDTPVSDIM   59 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEEC-----------CCCCEEEEE-EHHHH------hcC----CCcchHHHHh
Confidence            466777788888877666     46677775           445556666 44442      110    1234688999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      .+  ++.++.+++++.++++.|..++.+.+||+|++|+++|+||..|+++.
T Consensus        60 ~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          60 DT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             CC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            88  89999999999999999999999999999988999999999999863

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.99  E-value=2.1e-09  Score=80.49  Aligned_cols=111  Identities=17%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC--------------
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA--------------   77 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~--------------   77 (207)
                      +++++++.+..+|.+.+.+.+.+.++|++           +.+++.+++ +..|...  .......              
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d-----------~~~~~~Giv-~~~dl~~--~~~~~~~~~~~~~~~~~~~~~   68 (135)
T cd04621           3 IATVHPEHSLLHVVDEMEKNGVGRVIVVD-----------DNGKPVGVI-TYRDLAF--AEFEDNERGLPKKSIKMKRKA   68 (135)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCcceEEC-----------CCCCEEEEE-eHHHHHH--Hhhcccccccchhhhhhhhhc
Confidence            45778899999999999989999999997           455666666 5555211  1100000              


Q ss_pred             -------CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           78 -------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        78 -------~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                             ......+++++|.+  ++..+.+++++.++++.|.+++.+++||+++ |+++|+||.+|+++
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          69 GQKRYRYVKEVPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccccccccccccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence                   01123478999998  8999999999999999999999999999996 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.99  E-value=4.7e-09  Score=77.20  Aligned_cols=100  Identities=20%  Similarity=0.251  Sum_probs=73.5

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.+++++|.+.+.+.+||+|++|+++|+++..|+.+.+.......    .+          .........
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~----~~----------~~~~~~~~~   67 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKA----RT----------GDRSGEKER   67 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhc----ch----------hhhhhhhhh
Confidence            6788999999999999999999999999998899999999999986431100000    00          000000001


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++.+++++.+++++|.+++
T Consensus        68 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~  101 (128)
T cd04632          68 MLDLPVYDAMSSPVITASPNDSVRDAVDRMLEND  101 (128)
T ss_pred             hccCcHHHHhcCCCceECCCCcHHHHHHHHHhCC
Confidence            1235688899888999999999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.99  E-value=7.7e-09  Score=93.49  Aligned_cols=161  Identities=20%  Similarity=0.208  Sum_probs=108.7

Q ss_pred             CeeccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc---cccCCceeeeecccch-hhhhhhhhhccC
Q 028558            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL---ATSSDRVSALRRSSAV-FASGTLTANSAA   77 (207)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~---~~~~~~~~~~~~s~~d-~~~~~~~~~~~~   77 (207)
                      |-+.+|+-..+  .+.+.+...-.-..+..++|.+---. +......+   -+....+.++. .... ......+..   
T Consensus        22 dv~l~p~~~~~--~~~~v~~~t~l~~~~~l~~Pii~a~M-~~vt~~~ma~a~a~~GglGvi~-~~~~~e~~~~~v~k---   94 (495)
T PTZ00314         22 DVILLPGYIDF--SRDDVDLSTRLTRNIRLKIPIVSSPM-DTVTEHKMAIAMALMGGIGVIH-NNCSIEEQVEEVRK---   94 (495)
T ss_pred             ceEeccccccc--ccccccccccccCCcccCCceeecCc-cccccHHHHHHHHHCCCeEEec-CCCCHHHHHHHHhh---
Confidence            44566766655  33444444444455666777442222 23333333   34555565554 3333 212222221   


Q ss_pred             CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC---CcEEEEEehhhHHhhhcccCCCCCCCCCC
Q 028558           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMF  154 (207)
Q Consensus        78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~---g~lvGiVt~~dl~~~~~~~~~~~~~~~~~  154 (207)
                          ....++.|..  +++++++++++.+++++|.+++++.+||+|++   ++++|+|+.+|+....             
T Consensus        95 ----vk~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-------------  155 (495)
T PTZ00314         95 ----VKRFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-------------  155 (495)
T ss_pred             ----cccccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-------------
Confidence                1246678888  89999999999999999999999999999963   7999999999997421             


Q ss_pred             CcccchhhhHHHHHHHHhhhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                         ....++.++|++  +++++++++++.+++++|.+++
T Consensus       156 -------------------~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~  191 (495)
T PTZ00314        156 -------------------DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESR  191 (495)
T ss_pred             -------------------cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcC
Confidence                               134578999987  7899999999999999998763

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.97  E-value=1.6e-09  Score=79.05  Aligned_cols=112  Identities=22%  Similarity=0.354  Sum_probs=85.3

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccC---------CCCC
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAA---------PSSG   81 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~---------~~~~   81 (207)
                      ++++++..+..++.+.+.+.+...++|++           ++ .++.+++ +..|..  +.+.....         ....
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d-----------~~~~~~~G~v-~~~dl~--~~~~~~~~~~~~~~~~~~~~~   68 (125)
T cd04631           3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVD-----------EGTGKLVGII-TATDIL--KYLGGGEKFNKIKTGNGLEAI   68 (125)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCcccceeEe-----------CCCCEEEEEE-EHHHHH--HHhhccchhccccccccchhh
Confidence            45778888999999999989988888885           33 5566666 665521  11111000         0112


Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      ..++.++|.+  ++.++++++++.++++.|.+++.+.+||++++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            3468899988  8999999999999999999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.97  E-value=2.2e-09  Score=77.60  Aligned_cols=113  Identities=20%  Similarity=0.310  Sum_probs=85.2

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhh------ccCCCCCcccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTAN------SAAPSSGVYTV   85 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~------~~~~~~~~~~v   85 (207)
                      +.++.++.+..++.+.+.+.+...++|++           . .++.+++ +..+.........      .........++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-----------~-~~~~G~i-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   69 (122)
T cd04585           3 PITVTPDTSLMEALKLMKENSIRRLPVVD-----------R-GKLVGIV-TDRDLKLASPSKATTLDIWELYYLLSKIKV   69 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHhCCcceeeEec-----------C-CeEEEEE-eHHHHHHhhhcccccccchhhhhhhcccCH
Confidence            45678888999999999988999999886           3 4556666 6655211100000      00000123568


Q ss_pred             cccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        86 ~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      .++|.+  ++.++++++++.++++.|.+++.+.+||++++|+++|+||.+|+++
T Consensus        70 ~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          70 SDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             HHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            899998  8999999999999999999999999999997799999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.97  E-value=7e-09  Score=74.32  Aligned_cols=86  Identities=20%  Similarity=0.321  Sum_probs=71.1

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+.....                           ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~---------------------------~~   54 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES---------------------------EE   54 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh---------------------------hh
Confidence            357889999999999999999999999999889999999999998642100                           01


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                      ....++.++|.++++++.+++++.+++++|.++
T Consensus        55 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~   87 (113)
T cd04615          55 LKDAKVREVMNSPVITIDANDSIAKARWLMSNN   87 (113)
T ss_pred             hcCCcHHHhccCCceEECCCCcHHHHHHHHHHc
Confidence            134568889988899999999999999999765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.97  E-value=1.1e-08  Score=91.69  Aligned_cols=90  Identities=31%  Similarity=0.510  Sum_probs=78.5

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC---CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~---g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      +.++.|.+  ++.++++++++.++++.|.+++++.+||+|++   ++++|+|+.+|++...                   
T Consensus        81 ~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-------------------  139 (450)
T TIGR01302        81 RAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK-------------------  139 (450)
T ss_pred             cccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-------------------
Confidence            46788988  89999999999999999999999999999977   7999999999997521                   


Q ss_pred             hhhHHHHHHHHhhhcCCccccccc-CCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                   ....++.++|+ .+++++++++++.+++++|.+++
T Consensus       140 -------------~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~  174 (450)
T TIGR01302       140 -------------DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHR  174 (450)
T ss_pred             -------------cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcC
Confidence                         12456889998 48999999999999999998763

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.97  E-value=4.3e-09  Score=78.28  Aligned_cols=104  Identities=32%  Similarity=0.530  Sum_probs=75.5

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHH-HH----H
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN-EV----Q  168 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~  168 (207)
                      ++.++.+++++.++++.|.+++++++||+|++|+++|+|+..|+.+........         ....|.... ..    .
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~---------~~~~~~~~~~~~~~~~~   73 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTER---------RRARWLDLLAGAEELAA   73 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcc---------hhhhHHHHhcchHHHHH
Confidence            688999999999999999999999999999889999999999998753211100         000111000 00    0


Q ss_pred             HHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          169 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       169 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ... .....++.++|.++++++.+++++.+++++|.++|
T Consensus        74 ~~~-~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~  111 (135)
T cd04586          74 AFV-RSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHR  111 (135)
T ss_pred             HHH-HhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcC
Confidence            000 11345688999888999999999999999998764

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.97  E-value=2.5e-09  Score=75.54  Aligned_cols=103  Identities=19%  Similarity=0.255  Sum_probs=81.7

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++.+++++.+..++.+.+.+++...+.|++            +.+..++. +..+....          .....+.++|.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d------------~~~~~Giv-~~~~l~~~----------~~~~~~~~~~~   58 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE------------DGKLVGII-TSRDVRRA----------HPNRLVADAMT   58 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE------------CCEEEEEE-ehHHhhcc----------cccCCHHHHcc
Confidence            345678888889999888888888888885            24455666 55552110          01235889998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++++++++.++++.|.+++.+.+||+|+ |+++|+||.+|++.
T Consensus        59 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          59 R--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             C--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            8  8999999999999999999999999999996 99999999999863

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.96  E-value=5.2e-09  Score=76.05  Aligned_cols=96  Identities=28%  Similarity=0.329  Sum_probs=73.7

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++.+.|.+.+++.+||++++|+++|+++..++++....... .           .+..      ....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~-~-----------~~~~------~~~~   63 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLS-D-----------NGEE------SLTK   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccc-c-----------cccc------cccc
Confidence            57889999999999999999999999999988999999999999875421000 0           0000      0001


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++.+++++.++++.|.+++
T Consensus        64 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (122)
T cd04803          64 ERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENK   97 (122)
T ss_pred             ccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcC
Confidence            1345688899889999999999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.96  E-value=2.6e-09  Score=76.41  Aligned_cols=110  Identities=20%  Similarity=0.231  Sum_probs=86.5

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +.++.++.+..++.+.+.+.+.++++|.+           ...++.+++ +..|..  +.+..  .......++.++|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~~~~~G~v-~~~~l~--~~~~~--~~~~~~~~v~~~~~~   66 (114)
T cd04613           3 VVTIPEDTPLNELLDVIAHSPENNFPVVD-----------DDGRLVGIV-SLDDIR--EILFD--PSLYDLVVASDIMTK   66 (114)
T ss_pred             ceeeCCCCcHHHHHHHHHhCCCcceeEEC-----------CCCCEEEEE-EHHHHH--HHHhc--ccccccEEHHHhccC
Confidence            45678888999999999888999888886           445666777 655521  11111  111223679999999


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC-CCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~dl~~  139 (207)
                        ++.++++++++.++++.|.+.+.+.+||+++ +|+++|+++.+|++.
T Consensus        67 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          67 --PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             --CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence              8999999999999999999999999999997 789999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.95  E-value=2.8e-09  Score=76.18  Aligned_cols=109  Identities=26%  Similarity=0.347  Sum_probs=84.9

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++.+++++.+..++.+.+.+.+...++|++           . .+..+++ +..+... ......   .....++.++|.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~-----------~-~~~~G~v-~~~~l~~-~~~~~~---~~~~~~i~~~~~   64 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD-----------D-GRLVGIV-TDRDLRN-RVVAEG---LDPDTPVSEVMT   64 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEE-----------C-CEEEEEE-EhHHHHH-HHhccC---CCccCCHHHHhC
Confidence            355778899999999999888888898886           3 4556666 5555211 111111   112356889998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      .  ++.++++++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus        65 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          65 A--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             C--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            8  8999999999999999999999999999996 89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.95  E-value=2.4e-09  Score=79.34  Aligned_cols=111  Identities=22%  Similarity=0.275  Sum_probs=83.9

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC--------------
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA--------------   77 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~--------------   77 (207)
                      +++++++.+..++.+.+.+.++.+++|++           +..++.+++ +..+..  +.+.....              
T Consensus         3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~i-~~~~l~--~~~~~~~~~~~~~~~~~~~~~~   68 (132)
T cd04636           3 VITVKKDDTLRDVVEILLTGKISGVPVVD-----------NEGRVVGIV-SEGDLI--RKIYKGKGLFYVTLLYSVIFLD   68 (132)
T ss_pred             CeEeCCCCcHHHHHHHHHHhCCCccceEC-----------CCCCEEEEE-eHHHHH--HHHhccCCcccccccccccccc
Confidence            45788999999999999989999998886           444555666 544421  11111000              


Q ss_pred             ----CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           78 ----PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        78 ----~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                          ......++.++|.+  ++..+.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus        69 ~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          69 ESKIKKLLGKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             hHHHHHHcCCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence                00111268899988  8999999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.95  E-value=8.8e-09  Score=73.53  Aligned_cols=84  Identities=25%  Similarity=0.313  Sum_probs=71.5

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.+++.+.++.++.+.|.+++++.+||+|+ |+++|+|+..|+.+....                             .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~-----------------------------~   52 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRH-----------------------------G   52 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence            6789999999999999999889999999997 999999999999864210                             0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++.+++++.+++++|.+++
T Consensus        53 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   86 (110)
T cd04595          53 LGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHD   86 (110)
T ss_pred             cccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcC
Confidence            1235688899889999999999999999998764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.94  E-value=2.5e-09  Score=76.54  Aligned_cols=109  Identities=20%  Similarity=0.222  Sum_probs=82.3

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +.++.+..+..++.+.+.+++..++++.+            +.++.+++ +..|...  .+... .......+++++|.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~------------~~~~~G~v-~~~dl~~--~~~~~-~~~~~~~~v~~~~~~   66 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVME------------RGELVGLL-TFREVLQ--AMAQH-GAGVLDTTVRAIMNP   66 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEee------------CCEEEEEE-EHHHHHH--HHHhc-CCchhcCCHHHHhCC
Confidence            34678888889998888888887777764            35566677 6666211  11110 011123468999988


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        .+.++++++++.++++.|.+++...+||++ +|+++|+||.+|+++
T Consensus        67 --~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          67 --EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             --CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence              889999999999999999999999999998 589999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.94  E-value=1e-08  Score=73.17  Aligned_cols=86  Identities=27%  Similarity=0.352  Sum_probs=71.1

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.+++++.++.++.+.|.+++++.+||+|+ |+++|+++.+|+.+.....+                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~---------------------------~   53 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG---------------------------L   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC---------------------------C
Confidence            6788999999999999999989999999996 99999999999986421100                           0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|..+++++.+++++.+++++|.+++
T Consensus        54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~   87 (111)
T cd04800          54 DPDTPVSEVMTAPPITIPPDATVFEALLLMLERG   87 (111)
T ss_pred             CccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcC
Confidence            1234678888889999999999999999998764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.94  E-value=4.4e-09  Score=95.03  Aligned_cols=109  Identities=21%  Similarity=0.253  Sum_probs=92.0

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .+++++.++.+..++.+.+.+++++.++|++           +..++.+++ +..|...      ..   ....++.++|
T Consensus        95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd-----------~~g~lvGiV-t~~DL~~------~~---~~~~~V~dim  153 (486)
T PRK05567         95 TDPVTVTPDTTLAEALALMARYGISGVPVVD-----------ENGKLVGII-TNRDVRF------ET---DLSQPVSEVM  153 (486)
T ss_pred             CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEc-----------cCCEEEEEE-EHHHhhh------cc---cCCCcHHHHc
Confidence            4567899999999999999999999999997           566777888 7666311      00   1124689999


Q ss_pred             c-ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 T-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~-~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      + .  +++++++++++.++++.|.+++++.+||+|++|+++|+||.+||++..
T Consensus       154 ~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        154 TKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             CCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence            8 5  799999999999999999999999999999999999999999999764

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.94  E-value=4.3e-09  Score=94.24  Aligned_cols=93  Identities=22%  Similarity=0.271  Sum_probs=80.3

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHH-----cCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCC
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  154 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~-----~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~  154 (207)
                      ....+++++|++  ++.++++++++.++++.|.+     ++...+||+|++++++|+|+.+|++...             
T Consensus       128 ~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~-------------  192 (449)
T TIGR00400       128 YSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK-------------  192 (449)
T ss_pred             CCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC-------------
Confidence            445689999999  99999999999999999975     4567899999889999999999997521             


Q ss_pred             CcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                          .+.+++++|++++++++++++++++++.|.+++
T Consensus       193 --------------------~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~  225 (449)
T TIGR00400       193 --------------------PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYD  225 (449)
T ss_pred             --------------------CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcC
Confidence                                234689999988999999999999999998763

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.93  E-value=7.6e-09  Score=74.07  Aligned_cols=87  Identities=25%  Similarity=0.272  Sum_probs=72.0

Q ss_pred             CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (207)
Q Consensus        93 ~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (207)
                      +++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++..++.+......                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~---------------------------   54 (114)
T cd04604           2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL---------------------------   54 (114)
T ss_pred             CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC---------------------------
Confidence            36788999999999999998888999999998899999999999987531100                           


Q ss_pred             hhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                      .....++.++|.++++++.+++++.+++++|.++
T Consensus        55 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   88 (114)
T cd04604          55 DILTLPVADVMTRNPKTIDPDALAAEALELMEEN   88 (114)
T ss_pred             ccccCCHHHhhccCCeEECCCCcHHHHHHHHHHc
Confidence            0122468899988899999999999999999765

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.93  E-value=1.2e-08  Score=72.99  Aligned_cols=87  Identities=31%  Similarity=0.376  Sum_probs=70.6

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++++.|.+++.+.+||+++ |+++|+|+.+|+++.....+.                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~   54 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL--------------------------D   54 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC--------------------------C
Confidence            5788999999999999999999999999997 999999999999753211000                          0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++.+++++.++++.|.+++
T Consensus        55 ~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~   88 (113)
T cd04587          55 PESTLVERVMTPNPVCATSDTPVLEALHLMVQGK   88 (113)
T ss_pred             cCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcC
Confidence            1124688899888999999999999999998754

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.93  E-value=3.8e-09  Score=75.26  Aligned_cols=108  Identities=26%  Similarity=0.330  Sum_probs=84.9

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      .++++++.+..++.+.+.+.+...++|++           + .+..++. +..|...  .....   ......+.++|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~-~~~~G~v-~~~dl~~--~~~~~---~~~~~~~~~~~~~   64 (111)
T cd04612           3 VVTVPVDLTVDEVLALMFGERHRGYPVVD-----------D-GRLVGIV-TLADIRR--VPAEG---REATVLVGDVMTR   64 (111)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcceEee-----------C-CeEEEEE-EHHHHHH--HHhcC---cccccCHHHhccC
Confidence            45678899999999999888888888886           4 5566676 6666211  11111   1112457889998


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++.+++++.++++.|.+++.+.+||++++|+++|+||..|+.+
T Consensus        65 --~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          65 --DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             --CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence              8999999999999999999999999999997799999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.93  E-value=8.4e-09  Score=76.40  Aligned_cols=107  Identities=29%  Similarity=0.355  Sum_probs=74.8

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..++.+....... ......+......   .+   ...+.
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~-~~~~~~~~~~~~~---~~---~~~~~   74 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKG-LFYVTLLYSVIFL---DE---SKIKK   74 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCC-ccccccccccccc---ch---HHHHH
Confidence            57889999999999999999999999999988999999999999875421110 0000000000000   00   01111


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++.+.+++++.+++++|.++|
T Consensus        75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~  108 (132)
T cd04636          75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKN  108 (132)
T ss_pred             HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCC
Confidence            2234788899888999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.93  E-value=9.7e-09  Score=73.16  Aligned_cols=85  Identities=32%  Similarity=0.462  Sum_probs=70.4

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++.+|+.+......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~----------------------------   52 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGR----------------------------   52 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCc----------------------------
Confidence            6788999999999999999989999999997 99999999999987431000                            


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++.+++++.++++.|.+++
T Consensus        53 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   86 (111)
T cd04612          53 EATVLVGDVMTRDPVTASPDETLRDALKRMAERD   86 (111)
T ss_pred             ccccCHHHhccCCCeEECCCCCHHHHHHHHHhCC
Confidence            0112567788888999999999999999998764

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.93  E-value=8.1e-09  Score=75.00  Aligned_cols=96  Identities=19%  Similarity=0.300  Sum_probs=72.8

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+++.......         ..+  +       .....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~---------~~~--~-------~~~~~   63 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTS---------VED--Q-------QRTQT   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccc---------ccc--h-------hhhhh
Confidence            67889999999999999999999999999988999999999999864210000         000  0       00000


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++++++++.++++.|.+++
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   97 (122)
T cd04635          64 KASPTVEKIMSTPVYSVTPDDSIATAVELMLEHD   97 (122)
T ss_pred             hccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcC
Confidence            1345678888888999999999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.92  E-value=1.4e-08  Score=72.52  Aligned_cols=86  Identities=21%  Similarity=0.212  Sum_probs=71.1

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      +++++++++++.++++.|.+++...+||+|+ |+++|+++..|+++......                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~---------------------------~   53 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG---------------------------L   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC---------------------------C
Confidence            5678899999999999999999999999997 89999999999986431000                           0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++.+.+++++.+++++|.+++
T Consensus        54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~   87 (111)
T cd04589          54 PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHR   87 (111)
T ss_pred             CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhC
Confidence            1245688899888999999999999999998764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.92  E-value=4e-09  Score=77.59  Aligned_cols=113  Identities=16%  Similarity=0.210  Sum_probs=85.7

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc----------CCCCC
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA----------APSSG   81 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~----------~~~~~   81 (207)
                      +++++++.+..++.+.+.+.+++.++|++           ++..+.+++ +..|... .+.....          .....
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-----------~~~~~~G~i-t~~dl~~-~~~~~~~~~~~~~~~~~~~~~~   69 (128)
T cd04632           3 VITVREDDSVGKAINVLREHGISRLPVVD-----------DNGKLTGIV-TRHDIVD-FVVRDRDKARTGDRSGEKERML   69 (128)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCEEEEEC-----------CCCcEEEEE-EHHHHHH-HHhhhhhhcchhhhhhhhhhhc
Confidence            45778999999999999999999999996           445666777 6666211 1111000          00012


Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEc--CCCcEEEEEehhhHHh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLA  139 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd--~~g~lvGiVt~~dl~~  139 (207)
                      ..++.++|.+  +++++++++++.++++.|.+++...+||++  ++|+++|+||.+|+++
T Consensus        70 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            3468899988  899999999999999999999999999985  3689999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.91  E-value=6.1e-09  Score=74.53  Aligned_cols=109  Identities=19%  Similarity=0.359  Sum_probs=83.9

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +++++++.+..++.+.+.+.+.+.+++++           ++ +..++. +..|... .+....  ......++.++|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~-~~~G~v-~~~dl~~-~~~~~~--~~~~~~~~~~~~~~   66 (112)
T cd04802           3 VITVDPDTTVYEAANIMTENNIGRLIVVD-----------NE-KPVGII-TERDLVK-KVVSRN--LKPREVPVGEVMST   66 (112)
T ss_pred             cEEECCCCCHHHHHHHHHHCCCCEEEEEE-----------CC-EEEEEE-EHHHHHH-HHhhcc--CCcccCCHHHhcCC
Confidence            45678999999999999888899998885           33 556666 5555211 111111  11234578899988


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++++++++.++++.|.+++.+.+||+|++ +++|+|+.+|+++
T Consensus        67 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          67 --PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             --CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence              89999999999999999999999999999864 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.91  E-value=1.7e-08  Score=71.86  Aligned_cols=85  Identities=27%  Similarity=0.375  Sum_probs=70.8

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++.+.+||+++ |+++|+++.+|+.+.....                            .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~----------------------------~   52 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASG----------------------------P   52 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcC----------------------------C
Confidence            5788999999999999999989999999986 8999999999998753100                            0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++++++++.++++.|.+.+
T Consensus        53 ~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~   86 (111)
T cd04611          53 DLQTPVGEVMSSPLLTVPADTSLYDARQLMREHG   86 (111)
T ss_pred             CCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcC
Confidence            0235688888888999999999999999998653

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.91  E-value=1.6e-08  Score=72.04  Aligned_cols=83  Identities=31%  Similarity=0.389  Sum_probs=70.2

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++++.+||+++ |+++|+++.+|+++....                             .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~-----------------------------~   51 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIAR-----------------------------G   51 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence            6788999999999999999999999999997 999999999999874210                             0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                      ....++.++|..+++++++++++.++++.|.+.
T Consensus        52 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   84 (110)
T cd04588          52 LELAKVKDVMTKDVITIDEDEQLYDAIRLMNKH   84 (110)
T ss_pred             ccccCHHHHhcCCceEECCCCCHHHHHHHHHhc
Confidence            112467788888899999999999999999765

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.91  E-value=3.5e-09  Score=75.25  Aligned_cols=100  Identities=20%  Similarity=0.244  Sum_probs=80.4

Q ss_pred             ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccccc
Q 028558           13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK   92 (207)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~   92 (207)
                      ++++++.+..++...+.+.+.+.++|++           + .+..+++ +..|.      ....     ..++.++|.+ 
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d-----------~-~~~~G~v-~~~~l------~~~~-----~~~~~~~~~~-   58 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVD-----------Y-NKFLGAV-YLKDI------ENAT-----YGDVVDYIVR-   58 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEE-----------C-CEEEEEE-EHHHH------hhhc-----ccchhhhhhc-
Confidence            3678888999999999999999999986           4 5555666 44442      1100     1247788988 


Q ss_pred             CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        93 ~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                       ...++++++++.++++.|.+++...+||++ +|+++|++|.+|+..
T Consensus        59 -~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          59 -GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             -CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence             899999999999999999999999999998 689999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.91  E-value=2.6e-09  Score=77.73  Aligned_cols=113  Identities=21%  Similarity=0.268  Sum_probs=86.2

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC---C-----CCC
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA---P-----SSG   81 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~---~-----~~~   81 (207)
                      ++++++++..+..++.+.+.+.++..++|++           . .++.+++ +..+...  .+.....   .     ...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-----------~-~~~~G~v-~~~~l~~--~~~~~~~~~~~~~~~~~~~   65 (122)
T cd04637           1 TRVVTVEMDDRLEEVREIFEKHKFHHLLVVE-----------D-NELVGVI-SDRDYLK--AISPFLGTAGETEKDLATL   65 (122)
T ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCEEEEEe-----------C-CeEEEEE-EHHHHHH--HHHHHhccccchHHHHHHH
Confidence            3567889999999999999989999999986           3 4566666 5555211  1100000   0     001


Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      ..+++++|.+  ++..+++++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          66 NRRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             HhHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            2358899988  8999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.91  E-value=1.3e-08  Score=74.79  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=69.9

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++++.+||+|++|+++|+++..|+++..........    .+..        ......  
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----~~~~--------~~~~~~--   67 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----YRTI--------TFKELS--   67 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----ccch--------hhhhhh--
Confidence            57889999999999999999999999999988999999999999875311000000    0000        000000  


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ..-....+.|..+++++++++++.+++++|.+++
T Consensus        68 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~  101 (126)
T cd04642          68 EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANK  101 (126)
T ss_pred             hhcccccccccCCCeEECCCCcHHHHHHHHHHhC
Confidence            0001233566778899999999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.90  E-value=3.7e-09  Score=76.70  Aligned_cols=111  Identities=23%  Similarity=0.345  Sum_probs=84.6

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc--------CCCCCc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA--------APSSGV   82 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~--------~~~~~~   82 (207)
                      +++.+.+..+..++.+.+.+++...+.|++           . .++.++. +..+...  .+....        ......
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~-----------~-~~~~G~v-~~~~l~~--~~~~~~~~~~~~~~~~~~~~   66 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIE-----------G-GKLVGIV-TEKDIAD--ALRSFRPLVRDRHQERRIRN   66 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEE-----------C-CEEEEEE-chHHHHH--hhhhhhhcccchhhhhhhhc
Confidence            355778888999999999888999998886           2 4555666 5555211  111000        001234


Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      .++.++|.+  ++.++++++++.++++.|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          67 LPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             cCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            568899988  8999999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.90  E-value=6.3e-09  Score=74.84  Aligned_cols=109  Identities=25%  Similarity=0.365  Sum_probs=87.2

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      ..++++.++.+..+|...|.++++..+.+.+            ...+.+++ +.+|...... ..    .....++.++|
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~------------~~~l~Gii-t~~di~~~~~-~~----~~~~~~v~~v~   68 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVD------------DGKLVGII-TERDILRALA-AG----GKRLLPVKEVM   68 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEee------------CCEEEEEE-EHHHHHHHHh-cc----CCccccHHHhc
Confidence            3567899999999999999999999999885            22577777 7777311111 11    01111589999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHH-cCCCEeEEEcCCC-cEEEEEehhhHH
Q 028558           90 TTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL  138 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~-~~~~~lpVvd~~g-~lvGiVt~~dl~  138 (207)
                      ++  ++.++.++.++.++.+.|.+ ++++++||+++++ +++|++|.+|+.
T Consensus        69 ~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          69 TK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             cC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            98  89999999999999999999 7999999999875 999999999973

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.90  E-value=7.4e-09  Score=74.06  Aligned_cols=108  Identities=20%  Similarity=0.198  Sum_probs=84.3

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      .++++++.+..++...|.+.+...++|++           + .+..+++ +..|...  ....  .......++.++|.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-----------~-~~~~G~v-~~~~l~~--~~~~--~~~~~~~~i~~~~~~   65 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVRD-----------G-DPRLGIV-TRTDLLD--AVLL--DGLPSSTPVGEIATF   65 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEec-----------C-CeEEEEE-EHHHHHH--HHHc--CCCCCCCCHHHHhCC
Confidence            34678888999999999888999999986           3 4566666 6555211  1111  111224468899998


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++..+++++++.++++.|.+++...+||+++ |+++|+||..|+.+
T Consensus        66 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          66 --PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             --CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence              8999999999999999999999999999984 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.89  E-value=1.1e-08  Score=74.55  Aligned_cols=98  Identities=26%  Similarity=0.305  Sum_probs=72.7

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (207)
                      ++.++.++.++.++++.|.+++.+.+||+|++ |+++|+|+..|+.+.........           .++. ..    ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~-----------~~~~-~~----~~   65 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFN-----------KIKT-GN----GL   65 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhc-----------cccc-cc----cc
Confidence            57889999999999999999999999999987 99999999999987542100000           0000 00    00


Q ss_pred             hhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      .....++.++|.++++++++++++.++++.|.+.+
T Consensus        66 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~  100 (125)
T cd04631          66 EAINEPVRSIMTRNVITITPDDSIKDAAELMLEKR  100 (125)
T ss_pred             hhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcC
Confidence            01234678888888999999999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.89  E-value=4.3e-09  Score=76.26  Aligned_cols=111  Identities=22%  Similarity=0.289  Sum_probs=85.1

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC-------CCCCccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA-------PSSGVYT   84 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~-------~~~~~~~   84 (207)
                      +.+++++.+..+|.+.+.+.+..+++|++           ++.++.+++ +..+...  .......       ......+
T Consensus         3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~~l~~--~~~~~~~~~~~~~~~~~~~~~   68 (121)
T cd04584           3 VVTITPTTTIAEALELMREHKIRHLPVVD-----------EEGRLVGIV-TDRDLRD--ASPSPFTTLSEHELYLLLKMP   68 (121)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCcccEEC-----------CCCcEEEEE-EHHHHHH--HhhhhcccchhhhhhhhcCcC
Confidence            45778889999999998888888898886           445666666 5555211  1100000       0123456


Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +.++|.+  .+.++++++++.++++.|.+++...+||+++ |+++|+++.+|+++
T Consensus        69 v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          69 VKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             HHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            8899998  8999999999999999999999999999986 89999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.89  E-value=1.5e-08  Score=71.85  Aligned_cols=77  Identities=27%  Similarity=0.192  Sum_probs=66.7

Q ss_pred             eEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhhhc
Q 028558           96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN  175 (207)
Q Consensus        96 ~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (207)
                      .++++++++.++++.|.+.++..+||+|+ |+++|+++.+|+.+..                                  
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~----------------------------------   48 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT----------------------------------   48 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc----------------------------------
Confidence            57899999999999999999999999997 9999999999998631                                  


Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          176 GKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       176 ~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ..++.++|.+.++++++++++.++++.|.+++
T Consensus        49 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~   80 (104)
T cd04594          49 YGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNK   80 (104)
T ss_pred             ccchhhhhhcCCcEEcCCCCHHHHHHHHHHcC
Confidence            12466788888899999999999999998753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.89  E-value=1.7e-08  Score=71.07  Aligned_cols=70  Identities=26%  Similarity=0.381  Sum_probs=62.1

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      +++++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+.+..                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~--------------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS--------------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence            678899999999999999999999999999889999999999998621                                


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  .++++++++++.+++++|.+++
T Consensus        50 ------------~~~~v~~~~~l~~a~~~m~~~~   71 (96)
T cd04614          50 ------------EVVTATKRTTVSECAQKMKRNR   71 (96)
T ss_pred             ------------CcEEecCCCCHHHHHHHHHHhC
Confidence                        1778999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11573 hypothetical protein; Provisional

Probab=98.88  E-value=1e-08  Score=90.84  Aligned_cols=100  Identities=13%  Similarity=0.033  Sum_probs=81.1

Q ss_pred             CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (207)
Q Consensus        79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~  157 (207)
                      .+++.+|+++|+|+.++.+++.++++.++++.+.+++++++||.+++ ++++|+|+.+|++..... +.           
T Consensus       183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~-~~-----------  250 (413)
T PRK11573        183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE-KK-----------  250 (413)
T ss_pred             ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc-cC-----------
Confidence            47778999999999999999999999999999999999999999754 789999999999863210 00           


Q ss_pred             cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                     ......+.+++ +++..|++++++.++++.|+++
T Consensus       251 ---------------~~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~  283 (413)
T PRK11573        251 ---------------EFTKENMLRAA-DEIYFVPEGTPLSTQLVKFQRN  283 (413)
T ss_pred             ---------------cCCHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhc
Confidence                           00112344565 5788999999999999999875

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.87  E-value=3.4e-08  Score=89.43  Aligned_cols=87  Identities=18%  Similarity=0.213  Sum_probs=75.0

Q ss_pred             cccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        86 ~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      +..|.+  +++++++++++.++++.|.+++++.+||+|+   +|+++|+||.+|+....                     
T Consensus       103 ~~gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------------------  159 (505)
T PLN02274        103 RVGFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------------------  159 (505)
T ss_pred             cccccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------------------
Confidence            334777  8999999999999999999999999999996   48999999999997521                     


Q ss_pred             hHHHHHHHHhhhcCCcccccccCC--CeEecCCCCHHHHHHHHhhc
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~e~l~~m~~~  206 (207)
                                 ....++.++|+++  .+++++++++.+++++|.++
T Consensus       160 -----------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~  194 (505)
T PLN02274        160 -----------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDS  194 (505)
T ss_pred             -----------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHc
Confidence                       1346799999876  78999999999999999875

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=2.4e-08  Score=72.94  Aligned_cols=96  Identities=19%  Similarity=0.106  Sum_probs=69.8

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (207)
                      ++.++++++++.++++.|.+++++++||+|++ |+++|+|+..|+++.......            ..+ ..    ....
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~------------~~~-~~----~~~~   64 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENAR------------SFP-GL----DPLY   64 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHH------------hcc-ch----hhhh
Confidence            67889999999999999999999999999987 899999999999874311000            000 00    0000


Q ss_pred             hhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                       .....+.++|..++.++.+++++.++++.|.+++
T Consensus        65 -~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~   98 (123)
T cd04627          65 -PIPLRDLTIGTSDVISINGDQPLIDALHLMHNEG   98 (123)
T ss_pred             -hhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcC
Confidence             0011234567788899999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=2.9e-08  Score=70.92  Aligned_cols=87  Identities=28%  Similarity=0.365  Sum_probs=70.6

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.+++++.++.++++.|.+++.+.+||+|+ ++++|+++..|+++.....+.                          .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~   54 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNL--------------------------K   54 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccC--------------------------C
Confidence            5788999999999999999999999999995 599999999999874311000                          0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++.+++++.+++++|.+++
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   88 (112)
T cd04802          55 PREVPVGEVMSTPLITIDPNASLNEAAKLMAKHG   88 (112)
T ss_pred             cccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcC
Confidence            1234678899888899999999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.86  E-value=2e-08  Score=72.60  Aligned_cols=88  Identities=30%  Similarity=0.426  Sum_probs=70.9

Q ss_pred             CceEECCCCCHHHHHHHHHHcC-CCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~-~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (207)
                      ++.++++++++.++++.|...+ ++.+||+|+ |+++|+|+..|+.+.....                |        ...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~----------------~--------~~~   56 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTP----------------Y--------GRA   56 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhch----------------h--------hHH
Confidence            5778999999999999998877 889999998 9999999999998643100                0        000


Q ss_pred             hhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                      .....++.++|.++++++.+++++.+++.+|.++
T Consensus        57 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   90 (119)
T cd04598          57 LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGR   90 (119)
T ss_pred             HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcC
Confidence            0134578899998999999999999999999765

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.86  E-value=6.5e-09  Score=93.98  Aligned_cols=114  Identities=22%  Similarity=0.223  Sum_probs=92.0

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      .+++++|+.+..+|.+.+.++++..++|++.+.        ...++.+++ +..|....         .....+++++|+
T Consensus       105 dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~--------~~gkLvGIV-t~~DL~~~---------~~~~~~V~diMt  166 (495)
T PTZ00314        105 DPYVLSPNHTVADVLEIKEKKGFSSILITVDGK--------VGGKLLGIV-TSRDIDFV---------KDKSTPVSEVMT  166 (495)
T ss_pred             CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc--------cCCeEEEEE-EHHHHhhc---------ccCCCCHHHhhC
Confidence            456899999999999999999999999996100        025677888 77773110         112457999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~  142 (207)
                      +..++++++++.++.+++++|.+++.+.+||+|++++++|+||++|+++...
T Consensus       167 ~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        167 PREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             CcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence            7557899999999999999999999999999999999999999999998653

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.85  E-value=1.9e-08  Score=71.55  Aligned_cols=82  Identities=40%  Similarity=0.547  Sum_probs=68.8

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.+++++.++.++++.|.+++.+.+||+|++|+++|+++.+++.+..                                
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~--------------------------------   50 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET--------------------------------   50 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc--------------------------------
Confidence            678899999999999999999999999999889999999999987421                                


Q ss_pred             hcCCcccccccCCCeEecC-CCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRE-TTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~-~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.+.+..+.+ ++++.+++++|.+++
T Consensus        51 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   85 (110)
T cd04601          51 DLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHK   85 (110)
T ss_pred             cCCCCHHHhcccCceEEecCCCCHHHHHHHHHHhC
Confidence            1234678888777777777 999999999998764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.85  E-value=2.4e-08  Score=72.31  Aligned_cols=96  Identities=30%  Similarity=0.404  Sum_probs=72.6

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++++++||+|++|+++|+++..++.+.......             ..+    .... ..
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~-------------~~~----~~~~-~~   63 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFT-------------TLS----EHEL-YL   63 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcc-------------cch----hhhh-hh
Confidence            57889999999999999999999999999988999999999999864211000             000    0000 01


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++++++++.+++++|.+++
T Consensus        64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~   97 (121)
T cd04584          64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHR   97 (121)
T ss_pred             hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcC
Confidence            2345688888888999999999999999998753

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.85  E-value=2.9e-08  Score=70.42  Aligned_cols=81  Identities=28%  Similarity=0.400  Sum_probs=68.8

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.+++..|.+.+++.+||++++++++|+++.+++....                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~--------------------------------   49 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP--------------------------------   49 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence            578889999999999999998999999999889999999999997521                                


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                       ...++.++|.++++++.+++++.+++++|.+++
T Consensus        50 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   82 (106)
T cd04638          50 -EEEQLALLMTRDPPTVSPDDDVKEAAKLMVENN   82 (106)
T ss_pred             -ccchHHHHhcCCCceECCCCCHHHHHHHHHHcC
Confidence             122466777788899999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.85  E-value=6.2e-09  Score=93.07  Aligned_cols=98  Identities=21%  Similarity=0.273  Sum_probs=86.2

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      +-..++.++|+.  +++++++..++.+|...|...|.+.+.++++++...||||++|+.......+              
T Consensus       146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g--------------  209 (610)
T COG2905         146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG--------------  209 (610)
T ss_pred             HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC--------------
Confidence            334578999999  9999999999999999999999999999999999999999999998653222              


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                   .....+++++|+.|+++++.++.+.+|+-.|.+.
T Consensus       210 -------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~  243 (610)
T COG2905         210 -------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRN  243 (610)
T ss_pred             -------------CCcccchhhhhccCceeecCcchHHHHHHHHHHh
Confidence                         1346789999999999999999999999999765

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.84  E-value=2.8e-08  Score=71.75  Aligned_cols=96  Identities=30%  Similarity=0.406  Sum_probs=72.5

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.+++++.++.++++.|.++++..+||+|+ |+++|+++..|+.+........          ...++    ...   .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~----------~~~~~----~~~---~   63 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATT----------LDIWE----LYY---L   63 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhccccc----------ccchh----hhh---h
Confidence            5788999999999999999999999999997 9999999999998754211000          00000    000   0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.+++.++++++++.+++..|.+.+
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   97 (122)
T cd04585          64 LSKIKVSDIMTRDPITVSPDASVEEAAELMLERK   97 (122)
T ss_pred             hcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcC
Confidence            1235688899889999999999999999998754

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.84  E-value=1e-08  Score=92.69  Aligned_cols=93  Identities=23%  Similarity=0.265  Sum_probs=76.1

Q ss_pred             ccccccccc-CCceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        84 ~v~~vm~~~-~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      .|+++|... .+..++++++++.++++.|.+++++.+||+|+   +|+++|+||.+|+....                  
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~------------------  156 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR------------------  156 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc------------------
Confidence            366676521 14579999999999999999999999999996   58999999999997421                  


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                   ...+.++.++|++  +++++++++++.+++++|.+++
T Consensus       157 -------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~  193 (502)
T PRK07107        157 -------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHK  193 (502)
T ss_pred             -------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcC
Confidence                         0134679999986  7789999999999999998864

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.84  E-value=3.5e-08  Score=70.56  Aligned_cols=87  Identities=22%  Similarity=0.361  Sum_probs=69.3

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++.+.++|.+ +|+++|+++.+|+++.....+.                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~--------------------------~   54 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA--------------------------G   54 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC--------------------------c
Confidence            578899999999999999888888887776 5999999999999875311000                          0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|..++.++++++++.+++++|.+++
T Consensus        55 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~   88 (112)
T cd04625          55 VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERH   88 (112)
T ss_pred             hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcC
Confidence            1234688899888899999999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.84  E-value=3.1e-08  Score=70.13  Aligned_cols=79  Identities=34%  Similarity=0.531  Sum_probs=68.3

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++++++.+.++.++++.|.+.+...+||+|+ ++++|+++..|++...                                
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~--------------------------------   49 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD--------------------------------   49 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC--------------------------------
Confidence            6888999999999999998888889999996 9999999999998521                                


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                       ...++.++|.+.++++.+++++.++++.|.++
T Consensus        50 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   81 (107)
T cd04610          50 -PDETVEEIMSKDLVVAVPEMDIMDAARVMFRT   81 (107)
T ss_pred             -ccccHHHhCCCCCeEECCCCCHHHHHHHHHHh
Confidence             12357888888889999999999999999764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.83  E-value=4e-08  Score=70.25  Aligned_cols=86  Identities=30%  Similarity=0.518  Sum_probs=69.3

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++.+.|.+++++.+||+|+ |+++|+++..|++......+.                          .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~--------------------------~   54 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR--------------------------D   54 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC--------------------------C
Confidence            6788999999999999999999999999997 999999999998732100000                          0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                      ....++.++|.+.+.++.+++++.++++.|.+.
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   87 (113)
T cd04622          55 PDTTTVGDVMTRGVVTVTEDDDVDEAARLMREH   87 (113)
T ss_pred             cccCCHHHhccCCccEECCCCCHHHHHHHHHHc
Confidence            112348889988899999999999999999765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.83  E-value=3.7e-09  Score=80.54  Aligned_cols=112  Identities=15%  Similarity=0.158  Sum_probs=89.1

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      +-|||.++|+.+..++.+.|-++|++-+.|..            ++.+.+-+ |+.+.  .+.+..+. ......+|+++
T Consensus        72 ~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~------------~~k~VGsI-tE~~i--v~~~le~~-e~i~~~~vr~v  135 (187)
T COG3620          72 HSPVVSVSPDDSISDVVNLMRDKGISQLPVIE------------EDKVVGSI-TENDI--VRALLEGM-ESIRSLRVREV  135 (187)
T ss_pred             cCCeeEECchhhHHHHHHHHHHcCCccCceee------------CCeeeeee-cHHHH--HHHHhccc-cchhhhhHHHH
Confidence            34899999999999999999999999999995            35555556 66662  12222221 34556789999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |..  .+++++++.++...-.++..+  ..+.|++ +|+++||||..|+++.+
T Consensus       136 M~e--~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e-~G~~vGIITk~DI~k~~  183 (187)
T COG3620         136 MGE--PFPTVSPDESLNVISQLLEEH--PAVLVVE-NGKVVGIITKADIMKLL  183 (187)
T ss_pred             hcC--CCCcCCCCCCHHHHHHHHhhC--CeEEEEe-CCceEEEEeHHHHHHHH
Confidence            999  999999999999888888765  4577885 79999999999999854

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.83  E-value=1e-08  Score=72.83  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..++...+.++++++++|++           + .++.+++ +..|..  +.+...  ......++.++|.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-----------~-~~~~G~v-~~~dl~--~~~~~~--~~~~~~~~~~~~~   64 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD-----------D-GRVVGSI-DESDLL--DALIEG--KAKFSLPVREVMG   64 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEee-----------C-CeeEEEE-eHHHHH--HHHhcc--ccccCcCHHHHhc
Confidence            345788899999999999999999999986           3 5566676 555521  111111  0111346888998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++++++++.++.+.|.+ . ..+||++++|+++|+||.+|+.+
T Consensus        65 ~--~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          65 E--PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             C--CCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence            8  89999999999999999988 3 34788888899999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.83  E-value=1.5e-08  Score=91.01  Aligned_cols=112  Identities=21%  Similarity=0.192  Sum_probs=88.2

Q ss_pred             ccCCceeeeecccch-hhhhhhhhhccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEE
Q 028558           51 TSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (207)
Q Consensus        51 ~~~~~~~~~~~s~~d-~~~~~~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lv  129 (207)
                      +....+.++. .... ......+        ..+++.++|.+  +++++.+++++.++++.|.+++++.+||+| +++++
T Consensus        64 A~~GGigvIh-~n~~i~~qae~v--------~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklv  131 (475)
T TIGR01303        64 ARRGGIVILP-QDLPIPAVKQTV--------AFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPV  131 (475)
T ss_pred             HHCCCEEEEe-CCCCHHHHHHHH--------hhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEE
Confidence            5555666665 4444 2222222        23467789998  899999999999999999999999999998 47999


Q ss_pred             EEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          130 GLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       130 GiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      |+||.+|+....                                 ...++.++|+++++++++++++.+++++|.+++
T Consensus       132 GIVT~rDL~~~~---------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~  176 (475)
T TIGR01303       132 GLVTDSDLLGVD---------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAP  176 (475)
T ss_pred             EEEEHHHhhcCC---------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcC
Confidence            999999986420                                 234689999999999999999999999998764

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.83  E-value=9.1e-09  Score=92.16  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=91.2

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC---CceeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS---DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD   87 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~---~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~   87 (207)
                      .++++.++.+..++.+.+.+++++.++|++           +.   .++.+++ +..|....      .   ....++++
T Consensus        89 ~~vtl~~~~tv~eal~~m~~~~~s~lpVvd-----------~~~~~~~lvGIV-t~rDL~~~------~---~~~~~V~d  147 (450)
T TIGR01302        89 DPVTISPETTVADVLELMERKGISGIPVVE-----------DGDMTGKLVGII-TKRDIRFV------K---DKGKPVSE  147 (450)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEEe-----------CCCCCCeEEEEE-EHHHHhhh------h---cCCCCHHH
Confidence            567899999999999999999999999996           33   4677888 76663110      0   12347999


Q ss_pred             ccc-ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           88 FMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        88 vm~-~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +|+ +  +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus       148 vm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       148 VMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             hhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            999 5  799999999999999999999999999999999999999999999865

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.83  E-value=1.9e-08  Score=71.87  Aligned_cols=76  Identities=34%  Similarity=0.416  Sum_probs=64.0

Q ss_pred             ECCCCCHHHHHHHHHHcC-----CCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558           98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (207)
Q Consensus        98 v~~~~~v~ea~~~m~~~~-----~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (207)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+|+.+++++..                               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------------------------------   50 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------------------------------   50 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence            578899999999998776     47899999889999999999998521                               


Q ss_pred             hhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                        ...++.++|.++++++.+++++.+++++|.++
T Consensus        51 --~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~   82 (109)
T cd04606          51 --PDTPVSDIMDTDVISVSADDDQEEVARLFEKY   82 (109)
T ss_pred             --CcchHHHHhCCCCeEEcCCCCHHHHHHHHHHc
Confidence              23457788888889999999999999999765

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.82  E-value=3.6e-08  Score=71.03  Aligned_cols=82  Identities=32%  Similarity=0.449  Sum_probs=68.6

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHH
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (207)
                      ++.++.+++++.++++.|.+++...+||+|+   +|+++|+++.+|++...                             
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~-----------------------------   53 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT-----------------------------   53 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence            5788999999999999999889999999996   68999999999987421                             


Q ss_pred             HhhhcCCcccccccCCCeEecC--CCCHHHHHHHHhhcC
Q 028558          171 LSKTNGKMVGDLMTPAPVVVRE--TTNLEDAARSSHSFF  207 (207)
Q Consensus       171 ~~~~~~~~v~~im~~~~~~v~~--~~~l~e~l~~m~~~g  207 (207)
                         ....++.++|.+.+.++..  ++++.+++++|.+++
T Consensus        54 ---~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~   89 (114)
T cd04602          54 ---DSETPLSEVMTPREVLVVAPTGITLEEANEILRESK   89 (114)
T ss_pred             ---ccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcC
Confidence               1124588899877788866  999999999998764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.82  E-value=3.5e-08  Score=70.01  Aligned_cols=84  Identities=24%  Similarity=0.310  Sum_probs=69.5

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++++++++.++++.|.+++.+.+||+++ |+++|+++..|+.+......                           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~---------------------------~   53 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK---------------------------A   53 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc---------------------------c
Confidence            5788999999999999999999999999997 99999999999997531100                           0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhh
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHS  205 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~  205 (207)
                      ....++.++|.++++++++++++.+++++|.+
T Consensus        54 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~   85 (110)
T cd04609          54 KFSLPVREVMGEPLPTVDPDAPIEELSELLDR   85 (110)
T ss_pred             ccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh
Confidence            01246778888888999999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.81  E-value=4.3e-08  Score=69.92  Aligned_cols=84  Identities=27%  Similarity=0.388  Sum_probs=68.7

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (207)
                      ++.++++++++.++++.|.+++.+.+||++++ |+++|+++..|+.+....                             
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~-----------------------------   52 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE-----------------------------   52 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc-----------------------------
Confidence            57889999999999999999999999999987 999999999999875310                             


Q ss_pred             hhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      .....++.+++ .++.++.+++++.+++++|.+++
T Consensus        53 ~~~~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~   86 (111)
T cd04590          53 GEEDLDLRDLL-RPPLFVPESTPLDDLLEEMRKER   86 (111)
T ss_pred             CCCcCCHHHHh-cCCeecCCCCcHHHHHHHHHhcC
Confidence            00113455665 46788999999999999998764

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.80  E-value=1.9e-08  Score=83.80  Aligned_cols=103  Identities=19%  Similarity=0.215  Sum_probs=83.7

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +.+++++.+..++.+.+.+.++++++|++           +..++.+++ +..|...  .+..   ......+++++|.+
T Consensus       166 ~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd-----------~~g~~~Giv-t~~dl~~--~~~~---~~~~~~~v~~im~~  228 (268)
T TIGR00393       166 LPLIAPTTSFKDALLEMSEKRLGSAIVCD-----------ENNQLVGVF-TDGDLRR--ALLG---GGSLKSEVRDFMTL  228 (268)
T ss_pred             CCcCCCCCcHHHHHHHHhhcCCcEEEEEe-----------CCCCEEEEE-EcHHHHH--HHhc---CCcccCcHHHhCCC
Confidence            56788999999999999989999999996           556677777 7667311  1111   11234579999999


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEe
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS  133 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt  133 (207)
                        ++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+
T Consensus       229 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       229 --GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             --CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence              8999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.80  E-value=2.1e-08  Score=73.75  Aligned_cols=90  Identities=24%  Similarity=0.405  Sum_probs=67.8

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh-
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS-  172 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  172 (207)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+....                        ..... 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~------------------------~~~~~~   57 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI------------------------KRIQEG   57 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh------------------------HHHHHc
Confidence            46889999999999999999999999999988999999999999862100                        00000 


Q ss_pred             --hhcCCcccccccCCCeEe------cCCCCHHHHHHHHhhcC
Q 028558          173 --KTNGKMVGDLMTPAPVVV------RETTNLEDAARSSHSFF  207 (207)
Q Consensus       173 --~~~~~~v~~im~~~~~~v------~~~~~l~e~l~~m~~~g  207 (207)
                        .....++.++|.+++..+      .+++++.++++.|.+++
T Consensus        58 ~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~  100 (126)
T cd04640          58 GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASG  100 (126)
T ss_pred             CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCC
Confidence              012356888997655433      36899999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.80  E-value=3.6e-08  Score=71.65  Aligned_cols=96  Identities=24%  Similarity=0.286  Sum_probs=71.4

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      +++++++++++.++.+.|.+++++.+||+|+ |+++|+++..++.+.+.....            ..+..   ... . .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~------------~~~~~---~~~-~-~   63 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLG------------TAGET---EKD-L-A   63 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhc------------cccch---HHH-H-H
Confidence            5788999999999999999999999999996 999999999999875311000            00000   000 0 0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|.++++++.+++++.++++.|.+++
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   97 (122)
T cd04637          64 TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENS   97 (122)
T ss_pred             HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcC
Confidence            1123578888889999999999999999997653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=5.1e-08  Score=70.64  Aligned_cols=96  Identities=22%  Similarity=0.301  Sum_probs=72.3

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..++.+.......             .|.  .  ......
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-------------~~~--~--~~~~~~   63 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRP-------------LVR--D--RHQERR   63 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhh-------------ccc--c--hhhhhh
Confidence            5788999999999999999999999999996 999999999999875321000             000  0  000001


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....++.++|..+++++.+++++.+++++|.+.+
T Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   97 (121)
T cd04633          64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENN   97 (121)
T ss_pred             hhccCHHHHccCCceEECCCCcHHHHHHHHHHcC
Confidence            1245678889888999999999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=1.5e-08  Score=76.39  Aligned_cols=111  Identities=20%  Similarity=0.338  Sum_probs=83.4

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC-------------
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA-------------   77 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~-------------   77 (207)
                      ++++++++.+..++.+.+.+.+.+.++|++           + ..+.+++ +..|..  +.+.....             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd-----------~-~~~~G~v-~~~dl~--~~~~~~~~~~~~~~~~~~~~~   66 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLD-----------G-GKLVGIV-SESDIL--KLLVTHDPSGNLWLPSPLELI   66 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeE-----------C-CeEEEEe-cHHHHH--HHHHhccCccccccCCcceee
Confidence            356888999999999999999998898886           3 3455555 544410  11100000             


Q ss_pred             -----------------CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           78 -----------------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        78 -----------------~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                                       ......++.++|.+  ++.++++++++.++++.|.+++.+.+||+++ |+++|+|+.+|++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          67 ELPLREFINWEETKRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             eccchheeehHHHHHHHHHHhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                             00123467889988  8999999999999999999999999999996 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=2.1e-08  Score=71.15  Aligned_cols=103  Identities=22%  Similarity=0.298  Sum_probs=79.8

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      +++++++.+..++...+.+.+.+.++|++           +..++.++. +..+..      ..    .....+.++|..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~~~~~g~v-~~~~l~------~~----~~~~~~~~~~~~   60 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVVK-----------KSGELVGII-TRKDLL------RN----PEEEQLALLMTR   60 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEEc-----------CCCcEEEEE-EHHHHH------hc----cccchHHHHhcC
Confidence            56778888888888888888888888886           334555666 444421      11    112347788888


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|+++
T Consensus        61 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          61 --DPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             --CCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence              899999999999999999999999999998 479999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.79  E-value=1.8e-08  Score=92.88  Aligned_cols=112  Identities=17%  Similarity=0.210  Sum_probs=89.2

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      ..+++++.+..++.+.+.+++.+.+.|++           ++.+..+++ +..|... ....   .......++.++|++
T Consensus       457 ~~~v~~~~tl~ea~~~l~~~~~~~~~VvD-----------~~g~lvGiV-t~~dL~~-~l~~---~~~~~~~~v~dim~~  520 (574)
T PRK01862        457 QTVVPPTASVADMTRVFLEYPVKYLYVVD-----------DDGRFRGAV-ALKDITS-DLLD---KRDTTDKTAADYAHT  520 (574)
T ss_pred             CceeCCCCCHHHHHHHHHhCCCceEEEEc-----------CCCeEEEEE-EHHHHHH-Hhhc---ccccccchHHHhccC
Confidence            45788888999999999999999999996           556677787 6666311 1111   111223578999999


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC--CcEEEEEehhhHHhhh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALD  141 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~--g~lvGiVt~~dl~~~~  141 (207)
                        ++.++++++++.++++.|.+++.+.+||+|++  ++++|+||++|+.+.+
T Consensus       521 --~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        521 --PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             --CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence              89999999999999999999999999999876  4899999999999753

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.78  E-value=4.4e-08  Score=83.07  Aligned_cols=111  Identities=15%  Similarity=0.151  Sum_probs=88.0

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      .+++++++.+..++...+.+++.+.+.|++          .+..++.|++ +..|...  ....    ......+.++|.
T Consensus        78 ~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~----------~~~d~iiGiv-~~kDll~--~~~~----~~~~~~l~~l~r  140 (292)
T PRK15094         78 QMITLKRNQTLDECLDVIIESAHSRFPVIS----------EDKDHIEGIL-MAKDLLP--FMRS----DAEAFSMDKVLR  140 (292)
T ss_pred             HEEEEeCCCCHHHHHHHHHhcCCcEEEEec----------CCCCcEEEEE-EHHHHHh--Hhhc----cCCcCCHHHHcC
Confidence            478999999999999999999999999985          1225677777 6666311  1111    011234788897


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +   +.++++++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+
T Consensus       141 ~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~i  188 (292)
T PRK15094        141 Q---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  188 (292)
T ss_pred             C---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHH
Confidence            7   45899999999999999999999999999889999999999999865

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.78  E-value=4.9e-08  Score=86.98  Aligned_cols=98  Identities=27%  Similarity=0.300  Sum_probs=80.2

Q ss_pred             CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEc-CCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (207)
Q Consensus        79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd-~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~  157 (207)
                      ++++.+|+++|+|+.++.+++.+.++.++.+.+.+++++++||++ +.+.++|+++.+|++.......            
T Consensus       202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~------------  269 (429)
T COG1253         202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ------------  269 (429)
T ss_pred             ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc------------
Confidence            477889999999999999999999999999999999999999999 5579999999999998531100            


Q ss_pred             cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                       ........+ ++++.|++++++.++++.|++.
T Consensus       270 -----------------~~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~  300 (429)
T COG1253         270 -----------------SDLDLRVLV-RPPLFVPETLSLSDLLEEFREE  300 (429)
T ss_pred             -----------------cccchhhcc-cCCeEecCCCcHHHHHHHHHHh
Confidence                             001122232 3889999999999999999864

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.76  E-value=5.3e-08  Score=68.52  Aligned_cols=110  Identities=26%  Similarity=0.406  Sum_probs=83.9

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      ++.+++..+..++.+.+.+.+...++|++           .+.++.+++ +..|..  +.......  .....+.++|..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~~~~~G~v-~~~~l~--~~~~~~~~--~~~~~~~~~~~~   66 (113)
T cd02205           3 VVTVSPDDTVAEALRLMLEHGISGLPVVD-----------DDGRLVGIV-TERDLL--RALAEGGL--DPLVTVGDVMTR   66 (113)
T ss_pred             ceEecCCCCHHHHHHHHHhcCCceEEEEC-----------CCCCEEEEE-eHHHHH--HHHHhccC--CccccHHHHhcC
Confidence            45678888889999999888888888886           445667777 655521  11111111  111126678888


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                        ++..+++++++.++++.|.+.+...+||+|++|+++|+++.+|+.+
T Consensus        67 --~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          67 --DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             --CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence              8999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=1.1e-07  Score=68.43  Aligned_cols=86  Identities=20%  Similarity=0.344  Sum_probs=67.6

Q ss_pred             CceEECCCCCHHHHHHHHHHcC-CCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  172 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~-~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (207)
                      ++.+++++.++.++++.|..++ .+.+||+| +|+++|+++..|+++......                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~---------------------------   53 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK---------------------------   53 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC---------------------------
Confidence            5778999999999999998888 67778877 589999999999987431100                           


Q ss_pred             hhcCCcccccccCCCeEecCC--CCHHHHHHHHhhcC
Q 028558          173 KTNGKMVGDLMTPAPVVVRET--TNLEDAARSSHSFF  207 (207)
Q Consensus       173 ~~~~~~v~~im~~~~~~v~~~--~~l~e~l~~m~~~g  207 (207)
                      .....++.++|.++++++.++  +++.+++++|.+++
T Consensus        54 ~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~   90 (115)
T cd04620          54 DLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQ   90 (115)
T ss_pred             CccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhC
Confidence            012346788998888889887  78999999998763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=8.2e-08  Score=72.38  Aligned_cols=110  Identities=25%  Similarity=0.360  Sum_probs=74.7

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCC--CC---CCCCCCCc---ccchhhhHH
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS--GR---ADNSMFPE---VDSTWKTFN  165 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~--~~---~~~~~~~~---~~~~~~~~~  165 (207)
                      +++++++++++.++++.|.+++++.+||+|+ |+++|+++..|+++.+.....  ..   .....+..   ....|+.  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE--   78 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH--
Confidence            6788999999999999999999999999997 999999999999875421110  00   00000000   0011111  


Q ss_pred             HHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       166 ~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                       ...........++.++|.++++++++++++.+++..|.+.+
T Consensus        79 -~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~  119 (143)
T cd04634          79 -TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHK  119 (143)
T ss_pred             -HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcC
Confidence             11111112345688899889999999999999999997653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.73  E-value=6.4e-08  Score=69.18  Aligned_cols=76  Identities=24%  Similarity=0.362  Sum_probs=66.3

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHH
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (207)
                      ....+++++++.++.+.+.+++.+.+||+|+   +|+++|+|+.+|+.+..                             
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~-----------------------------   53 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL-----------------------------   53 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH-----------------------------
Confidence            5778899999999999999998889999997   68999999999998642                             


Q ss_pred             HhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       171 ~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                          .+     +|.++++++++++++.+++++|.+++
T Consensus        54 ----~~-----~m~~~~~~v~~~~~l~~~~~~~~~~~   81 (105)
T cd04591          54 ----KN-----YIDPSPFTVSPRTSLEKVHQLFRKLG   81 (105)
T ss_pred             ----HH-----hccCCCceECCCCcHHHHHHHHHHcC
Confidence                01     77778889999999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.72  E-value=3.2e-08  Score=70.78  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=77.3

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc---CCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS---SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~---~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      +..++++.+..++...+.+.+...++|++           .   ..+..+++ +..|.      .....         ++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~~~~G~v-~~~dl------~~~~~---------~~   56 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVD-----------STEESPRLVGYI-LRSQL------VVALK---------NY   56 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEc-----------CCCCCCEEEEEE-eHHHH------HHHHH---------Hh
Confidence            34678888888899888888887787775           3   35566777 55552      11110         17


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      |.+  ++.++++++++.++++.|.+++.+.+||++ +|+++|+||.+|+.+
T Consensus        57 m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          57 IDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             ccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            888  899999999999999999999999999996 789999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.72  E-value=1.8e-07  Score=67.09  Aligned_cols=88  Identities=35%  Similarity=0.497  Sum_probs=73.3

Q ss_pred             ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHH
Q 028558           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE  166 (207)
Q Consensus        87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (207)
                      ++|.+  ++.++.++.++.++...|.++++..+||++. ++++|++|.+|+.++.....                     
T Consensus         3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~---------------------   58 (117)
T COG0517           3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG---------------------   58 (117)
T ss_pred             ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC---------------------
Confidence            34556  8999999999999999999999999999984 48999999999998642111                     


Q ss_pred             HHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhh
Q 028558          167 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHS  205 (207)
Q Consensus       167 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~  205 (207)
                             ....++.++|..+++++.+++++.+++++|.+
T Consensus        59 -------~~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~   90 (117)
T COG0517          59 -------KRLLPVKEVMTKPVVTVDPDTPLEEALELMVE   90 (117)
T ss_pred             -------CccccHHHhccCCcEEECCCCCHHHHHHHHHH
Confidence                   01115888998899999999999999999987

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.71  E-value=4.9e-08  Score=70.53  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=79.2

Q ss_pred             cccccCCCCCCcccccccccC-CCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc-CCCCCcccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQ-LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFM   89 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~-v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~-~~~~~~~~v~~vm   89 (207)
                      +.++++..+..++.+.+.+.+ .+.++|++           + ..+.+++ +..|...  .+.... .......+++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd-----------~-~~~~G~v-~~~~l~~--~~~~~~~~~~~~~~~v~~~~   67 (119)
T cd04598           3 APTVSPDTTVNDVLERFERDPDLSALAVVD-----------D-GRPVGLI-MREALME--LLSTPYGRALYGKKPVSEVM   67 (119)
T ss_pred             cCccCCCCcHHHHHHHHHhCCCccEEEEEE-----------C-CeeEEEE-EHHHHHH--HHhchhhHHHHcCCcHHHhc
Confidence            456788888888888887776 78888886           4 5556666 5444210  000000 0001234689999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCC---EeEEEcCCCcEEEEEehhhHHh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~---~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      .+  ++.++++++++.++++.|.+++..   ..||++++|+++|+|+..|+++
T Consensus        68 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          68 DP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            98  899999999999999999988754   3468887899999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.70  E-value=1.7e-07  Score=65.84  Aligned_cols=86  Identities=41%  Similarity=0.568  Sum_probs=69.4

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ++.+++++.++.++.+.|.+++.+.+||++++++++|+++.+|+.+......                           .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~   54 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG---------------------------L   54 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc---------------------------C
Confidence            5778999999999999999999999999998899999999999987531100                           0


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                      .....+.++|..+++++.+++++.+++..|.+.
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (113)
T cd02205          55 DPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEH   87 (113)
T ss_pred             CccccHHHHhcCCceecCCCcCHHHHHHHHHHc
Confidence            011125677888899999999999999999765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.66  E-value=2.1e-07  Score=82.42  Aligned_cols=109  Identities=12%  Similarity=0.040  Sum_probs=89.5

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      .+++++.+.+..++.+.+.++|.+-+.|++          .+..++.|++ +..|..      .....  ....++++|.
T Consensus       202 ~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~----------~~~d~ivGiv-~~kDll------~~~~~--~~~~l~~~~~  262 (408)
T TIGR03520       202 DIFALDIETSFSEIIPKIIENGYSRIPVYK----------ETIDNITGVL-YIKDLL------PHLNK--KNFDWQSLLR  262 (408)
T ss_pred             hEEEEECCCCHHHHHHHHHhCCCCEEEEEc----------CCCCceEEEE-EHHHHH------hHhcc--CCCCHHHHcC
Confidence            478999999999999999999999999995          1345788888 666621      11111  2235778887


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +   +.++++++++.++++.|.+++.+..+|+|+.|..+|+||.+|++..+
T Consensus       263 ~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileei  310 (408)
T TIGR03520       263 E---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEI  310 (408)
T ss_pred             C---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            6   78999999999999999999999999999889999999999999865

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.61  E-value=2.8e-07  Score=84.45  Aligned_cols=57  Identities=33%  Similarity=0.456  Sum_probs=53.7

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+|+++|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|+.+..
T Consensus        68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~  124 (546)
T PRK14869         68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAY  124 (546)
T ss_pred             CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            579999999  999999999999999999999999999999889999999999998754

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.60  E-value=1e-07  Score=69.26  Aligned_cols=55  Identities=29%  Similarity=0.482  Sum_probs=51.7

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      .+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+.+
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            579999999  8999999999999999999999999999998899999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.58  E-value=1.5e-07  Score=83.77  Aligned_cols=91  Identities=35%  Similarity=0.403  Sum_probs=81.3

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHH-----cCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCc
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~-----~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~  156 (207)
                      .-+++.+|+.  ++++++++.|+.+++..+++     ..+..++|+|++++++|+++.++++..                
T Consensus       131 e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a----------------  192 (451)
T COG2239         131 EDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA----------------  192 (451)
T ss_pred             hhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC----------------
Confidence            4579999999  99999999999999999985     357889999999999999999999963                


Q ss_pred             ccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                       .....+.++|.+.+.++.++++.++++++|.+|.
T Consensus       193 -----------------~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~yd  226 (451)
T COG2239         193 -----------------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYD  226 (451)
T ss_pred             -----------------CcHhHHHHHhcccceeecccCCHHHHHHHHHHhC
Confidence                             1456799999999999999999999999999874

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.45  E-value=5.9e-07  Score=76.57  Aligned_cols=79  Identities=20%  Similarity=0.285  Sum_probs=68.9

Q ss_pred             cCCceeeeecccchhhhhhhhhhccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEE
Q 028558           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (207)
Q Consensus        52 ~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGi  131 (207)
                      +.+.+.+++ +.+|.          .......++..+|++  ++.++.+.++++.+.+.|...++..+||+|++.+++|+
T Consensus       229 ~~~kvvGvV-t~rDv----------~~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGi  295 (432)
T COG4109         229 RSMKVVGVV-TMRDV----------LDKKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGI  295 (432)
T ss_pred             ccceEEEEE-Eehhh----------hcCCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEE
Confidence            777888888 77772          112445689999999  99999999999999999999999999999999999999


Q ss_pred             EehhhHHhhhcc
Q 028558          132 VSDYDLLALDSI  143 (207)
Q Consensus       132 Vt~~dl~~~~~~  143 (207)
                      ||++|+++.++.
T Consensus       296 itR~dvlk~lq~  307 (432)
T COG4109         296 ITRQDVLKSLQM  307 (432)
T ss_pred             EEHHHHHHHHHH
Confidence            999999987743

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.42  E-value=6.4e-07  Score=80.20  Aligned_cols=110  Identities=11%  Similarity=0.106  Sum_probs=83.4

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .++++++++.+..++.+.|.++++.+++|++           +..++.+++ +..|...  .+..  .......++.++|
T Consensus       343 ~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~--~~~~--~~~~~~~~v~~im  406 (454)
T TIGR01137       343 PAPVTVHPTETVGDAIEILREYGFDQLPVVT-----------EAGKVLGSV-TLRELLS--ALFA--GKANPDDAVSKVM  406 (454)
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCeEEEEE-EHHHHHH--HHhc--cCCCcCCCHHHhc
Confidence            3577899999999999999989999998886           455677777 6666211  1111  1112234689999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      .+  ++.++++++++.++++.|.+++   .|||+++|+++|+||.+|+++.
T Consensus       407 ~~--~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       407 SK--KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             CC--CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence            98  8999999999999999998754   3455557899999999999874

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.22  E-value=2.3e-06  Score=64.08  Aligned_cols=99  Identities=14%  Similarity=0.219  Sum_probs=70.4

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCC--------CCcc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPS--------SGVY   83 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~--------~~~~   83 (207)
                      ++++.++.+..+|++.+.+++.++++|++           +..++.|++ +..|... ..........        .+..
T Consensus         3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD-----------~~g~l~Giv-t~~Dl~~-~~~~~~~~~~~~~~~~~~~~~~   69 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQSCVLVVD-----------SDDFLEGIL-TLGDIQR-FLFTNKTTRVQPEDETKQTNTC   69 (133)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCEEEEEC-----------CCCeEEEEE-EHHHHHH-HHhhccccccccchhhcccccc
Confidence            46788999999999999999999999996           556667777 6666211 1111111000        0001


Q ss_pred             cccccc---------cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC
Q 028558           84 TVGDFM---------TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD  125 (207)
Q Consensus        84 ~v~~vm---------~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~  125 (207)
                      .+.++|         ..  +++++.+++++.++++.|.+++++.+||+|++
T Consensus        70 ~v~~i~~~~~~~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          70 LVSSVCTKGISYGGQEC--GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             cHHHHhhhhhhhcccCC--CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            133455         45  78999999999999999999999999999854

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.22  E-value=2e-06  Score=73.90  Aligned_cols=100  Identities=22%  Similarity=0.228  Sum_probs=80.9

Q ss_pred             CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (207)
Q Consensus        79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~  157 (207)
                      +++.++|+|+|+|++++..++.+++.++..+.+....+.++|+..++ +.++||++.+|+++++...+-           
T Consensus       196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-----------  264 (423)
T COG4536         196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-----------  264 (423)
T ss_pred             ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-----------
Confidence            57789999999999999999999999999999999999999999643 579999999999997532110           


Q ss_pred             cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                      ..+.++..+. .+|..|++++++..-+..|.++
T Consensus       265 ----------------~~k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~  296 (423)
T COG4536         265 ----------------FTKEDILRAA-DEPYFVPEGTPLSDQLVAFQRN  296 (423)
T ss_pred             ----------------ccHhHHHHHh-cCCeecCCCCcHHHHHHHHHHh
Confidence                            0122233333 4788999999999999999764

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.20  E-value=5.8e-06  Score=49.08  Aligned_cols=46  Identities=41%  Similarity=0.710  Sum_probs=42.1

Q ss_pred             ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        95 ~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      +.++.+++++.++++.|.+++.+.+||++++++++|+++..++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            5678999999999999999999999999987899999999999763

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.12  E-value=4.8e-06  Score=74.35  Aligned_cols=108  Identities=13%  Similarity=0.166  Sum_probs=84.1

Q ss_pred             cccccccCCCCCCcccccccc-----cCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFA-----LQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT   84 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~-----~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~   84 (207)
                      +..++++++-+..+|..+.-+     ..+..+-|++           ..+++.|++ |-++.      .    ....+..
T Consensus       140 ~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD-----------~~~~L~Gvv-sl~~L------l----~a~~~~~  197 (451)
T COG2239         140 TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD-----------EKGKLLGVV-SLRDL------L----TAEPDEL  197 (451)
T ss_pred             eeeEEeccCcCHHHHHHHHHHhcccccccceEEEEC-----------CccceEEEe-eHHHH------h----cCCcHhH
Confidence            445677788777777665552     3355677776           666788887 54442      1    1123457


Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++++|.+  +++++.++++-+++.+.+.+++.-.+||+|++++++|+||..|++..+
T Consensus       198 i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi  252 (451)
T COG2239         198 LKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             HHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence            9999999  899999999999999999999999999999999999999999998754

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.07  E-value=7.8e-06  Score=71.78  Aligned_cols=115  Identities=18%  Similarity=0.171  Sum_probs=80.7

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccc-cc----
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT-VG----   86 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~-v~----   86 (207)
                      ++.+....+.-+|.+.|.+++++++.|++           .+.+..+.. +-.|.  ..+.... .......+ ++    
T Consensus       239 i~~i~~~~~v~~al~~m~~~~is~lpvV~-----------~~g~~v~~~-s~~Dv--~~l~~~~-~~~~~~~~~l~~~~~  303 (381)
T KOG1764|consen  239 IASISEDTPVIEALKIMSERRISALPVVD-----------ENGKKVGNY-SRFDV--IHLAREG-TYNNLDLSCLSEALS  303 (381)
T ss_pred             heeecCCCcHHHHHHHHHhcCcCcceEEc-----------CCCceecce-ehhhh--hhhhhcC-ccCccchhHHHHHhh
Confidence            55667777788899999999999999996           233333333 44441  0111110 01111111 21    


Q ss_pred             ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ..+..++.++++.+++++.++++.|..++++++.|+|++|.++|+||..|++..+
T Consensus       304 ~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l  358 (381)
T KOG1764|consen  304 HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYL  358 (381)
T ss_pred             hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHH
Confidence            2233344689999999999999999999999999999999999999999999876

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.00  E-value=2.1e-05  Score=69.62  Aligned_cols=103  Identities=15%  Similarity=0.092  Sum_probs=77.4

Q ss_pred             ccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccccCC
Q 028558           15 LRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEE   94 (207)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~~~   94 (207)
                      ..+.....+|...|.+.+.+.+.|++           ...+..+.+ +..+.      .....   ....+.+.+.+  .
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~g~~-~~~~~------~~~~~---~~~~~~~~~~~--~  346 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIE-----------RGNKFVGAV-SIDSL------KTALT---QQQGLDAALID--A  346 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEc-----------CCCcEEEEE-eHHHH------Hhhhh---cCCchhhhhcc--C
Confidence            33455666777788888898998886           555666666 43332      11000   11247778887  8


Q ss_pred             ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        95 ~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ..++.+++++.+++..+..+... +||+|++|+++|+|+..++++.+
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~  392 (400)
T PRK10070        347 PLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRAL  392 (400)
T ss_pred             CceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHH
Confidence            89999999999999999997766 99999999999999999999875

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.98  E-value=2.1e-05  Score=68.73  Aligned_cols=100  Identities=16%  Similarity=0.253  Sum_probs=72.8

Q ss_pred             CCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccccCCceE
Q 028558           18 PPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHV   97 (207)
Q Consensus        18 ~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~~~~~~   97 (207)
                      +.+..++...+...+...+.+++           ++.+..+.+ +..+.      .....   ....+.+.|.+  ...+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~g~~-~~~~~------~~~~~---~~~~~~~~~~~--~~~~  314 (363)
T TIGR01186       258 DKGPRSALQLMRDERVDSLYVVD-----------RQNKLVGVV-DVESI------KQARK---KAQGLQDVLID--DIYT  314 (363)
T ss_pred             CCCHHHHHHHHHhcCCceEEEEc-----------CCCCEEEEE-eHHHH------HHHhh---cCCchhhhhcc--CCce
Confidence            33445555666666777777775           555666666 43332      11000   11247788888  8899


Q ss_pred             ECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        98 v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +++++++.+++..|.+++.. +||+|++|+++|+||..+++..+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       315 VDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL  357 (363)
T ss_pred             ECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence            99999999999999999998 99999999999999999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=97.88  E-value=1e-05  Score=65.71  Aligned_cols=94  Identities=23%  Similarity=0.390  Sum_probs=74.0

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC-CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      ..++|+++|.|++...+++.+.++.+.+..+.++.+++|||+.+ .+.+.||+..+||++.+...               
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~---------------  129 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD---------------  129 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC---------------
Confidence            34689999999989999999999999999999999999999964 46899999999999854210               


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHh
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSH  204 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~  204 (207)
                                    .....+.++. +|...|+++..+...++=|.
T Consensus       130 --------------~~~F~i~~lL-RPav~VPESKrvd~lLkeFR  159 (293)
T COG4535         130 --------------AEPFDIKELL-RPAVVVPESKRVDRLLKEFR  159 (293)
T ss_pred             --------------cccccHHHhc-ccceecccchhHHHHHHHHH
Confidence                          1223455564 56677888877777776654

>PRK11573 hypothetical protein; Provisional

Probab=97.84  E-value=0.00011  Score=65.26  Aligned_cols=113  Identities=14%  Similarity=0.024  Sum_probs=86.3

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      .++.++.+.+..++.+...++|-+-+.|++          .+..++.|++ .-.|...  ....  ........+.++|.
T Consensus       198 ~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~----------~~~D~IiGiv-~~kDll~--~~~~--~~~~~~~~l~~~~r  262 (413)
T PRK11573        198 EIVGIDINDDWKSILRQLTHSPHGRIVLYR----------DSLDDAISML-RVREAYR--LMTE--KKEFTKENMLRAAD  262 (413)
T ss_pred             eEEEEECCCCHHHHHHHHHhCCCceEEEEc----------CCCCceEEEE-EHHHHHH--Hhhc--cCcCCHHHHHhhcc
Confidence            678899999999999999999999999985          1456677887 5566211  1111  11111123445555


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +   +..++++.++.++++.|.+++.+-..|+|+-|...|+||..|++..+
T Consensus       263 ~---~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEei  310 (413)
T PRK11573        263 E---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI  310 (413)
T ss_pred             C---CeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHH
Confidence            4   78999999999999999999999999999999999999999999865

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.80  E-value=5e-05  Score=66.16  Aligned_cols=110  Identities=19%  Similarity=0.175  Sum_probs=88.0

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      .+.+.|+.+..++.+.-..+|...+.+|.-|.        ...++.+++ |.+|....         +.....++++|++
T Consensus       118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~--------~~~KLvG~v-tsrdi~f~---------~~~~~~~~~vmt~  179 (503)
T KOG2550|consen  118 PIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK--------RGSKLVGII-TSRDIQFL---------EDNSLLVSDVMTK  179 (503)
T ss_pred             CcccCCcccchhhhhhcccccccccccccCCc--------ccceeEEEE-ehhhhhhh---------hcccchhhhhccc
Confidence            44677888888888888888888888885222        345677888 88882111         1234568999999


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                        +.++.+.+.++.++-+++.+++...+||+|++|+++.++++.||.+..
T Consensus       180 --~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  180 --NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             --ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence              778999999999999999999999999999999999999999998754

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.78  E-value=2.5e-05  Score=71.15  Aligned_cols=127  Identities=21%  Similarity=0.238  Sum_probs=88.8

Q ss_pred             CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-----CcEEEEEehhhHHhhhcccCCCCC--CC
Q 028558           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALDSISGSGRA--DN  151 (207)
Q Consensus        79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-----g~lvGiVt~~dl~~~~~~~~~~~~--~~  151 (207)
                      .++.++++++|++  ++++++.-+.+....+.++.+.++.|||+|+.     +++.|+|-++.++..+...-....  ..
T Consensus       578 ~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  578 YMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             HhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            4567789999999  99999999999999999999999999999853     578999999999876533211100  01


Q ss_pred             CCCCc-ccchhhh-------HHHHHHHHhh-hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          152 SMFPE-VDSTWKT-------FNEVQKLLSK-TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       152 ~~~~~-~~~~~~~-------~~~~~~~~~~-~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      +-.+. ....+.+       .+++.....+ ..-.++..+|++.|.+|++++++..+..+|..-|
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lG  720 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLG  720 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhc
Confidence            11110 0111111       1111111111 2345678899999999999999999999998765

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.72  E-value=0.00047  Score=61.59  Aligned_cols=112  Identities=13%  Similarity=0.069  Sum_probs=84.4

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      ..++.++.+.+..++.+.+.+++-+-+.|++ |         +..++.|++ ...|.      ................+
T Consensus       216 ~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~---------~~D~iiGiv-~~Kdl------l~~~~~~~~~~~~~~~~  278 (429)
T COG1253         216 TDIVALDLTDTVEELIELILESGHSRIPVYD-G---------DLDNIIGIV-HVKDL------LRALLDGQSDLDLRVLV  278 (429)
T ss_pred             ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc-C---------CCCcEEEEE-EHHHH------HHHHhcCccccchhhcc
Confidence            4577888888999999999999999999996 2         566777777 55552      11111110011122222


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .   ++..++++.++.++++.|++++.+...|+|+-|.+.|+||..|++...
T Consensus       279 ~---~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeI  327 (429)
T COG1253         279 R---PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEI  327 (429)
T ss_pred             c---CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHH
Confidence            2   489999999999999999999999999999999999999999999865

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.63  E-value=7.7e-05  Score=65.01  Aligned_cols=81  Identities=33%  Similarity=0.480  Sum_probs=70.0

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHH
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (207)
                      +++.+.|+.++.++++....+++..+||.++   +++++|+||.+|+-..                              
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~------------------------------  166 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL------------------------------  166 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh------------------------------
Confidence            5788999999999999999999999999973   3689999999998752                              


Q ss_pred             HhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       171 ~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                        +.....+.++|++.+.+.+++.+++++-+++.++
T Consensus       167 --~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~  200 (503)
T KOG2550|consen  167 --EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKI  200 (503)
T ss_pred             --hcccchhhhhcccccccccccccHHHHHHHHHhh
Confidence              1245678999998889999999999999998764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.34  E-value=0.0013  Score=58.22  Aligned_cols=93  Identities=22%  Similarity=0.180  Sum_probs=71.9

Q ss_pred             cccccccccccCC-ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        82 ~~~v~~vm~~~~~-~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ..++.++|.+... .+...++....+++..|..++.+.++|+|++++++|+|+.+++.+...                  
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------------  334 (400)
T PRK10070        273 VFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT------------------  334 (400)
T ss_pred             ccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh------------------
Confidence            3567788855111 123446778999999999999999999999999999999999976421                  


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                    ....+.+.+.+...++.+++++.+++..+.+.
T Consensus       335 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (400)
T PRK10070        335 --------------QQQGLDAALIDAPLAVDAQTPLSELLSHVGQA  366 (400)
T ss_pred             --------------cCCchhhhhccCCceeCCCCCHHHHHHHHHhC
Confidence                          12346666777788999999999999998754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.20  E-value=0.0027  Score=55.54  Aligned_cols=82  Identities=18%  Similarity=0.190  Sum_probs=67.1

Q ss_pred             CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  173 (207)
Q Consensus        94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (207)
                      ......++.+..++++.|...+...+.|+|+++++.|.|+.+++.....                               
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------------------  299 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK-------------------------------  299 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh-------------------------------
Confidence            3455677888999999999999999999999999999999999876321                               


Q ss_pred             hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                       ....+.+.+.+...++.+++++.+++..|.+++
T Consensus       300 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (363)
T TIGR01186       300 -KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAG  332 (363)
T ss_pred             -cCCchhhhhccCCceECCCCcHHHHHHHHHhCC
Confidence             123466777777889999999999999998754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.15  E-value=0.0019  Score=56.91  Aligned_cols=164  Identities=18%  Similarity=0.174  Sum_probs=99.7

Q ss_pred             ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccch-hhhhhhhhhccC-CCCCccccccccc
Q 028558           13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAV-FASGTLTANSAA-PSSGVYTVGDFMT   90 (207)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d-~~~~~~~~~~~~-~~~~~~~v~~vm~   90 (207)
                      +-+.|...+.++...+++.++.-+.|.+..          ...+..+. |.+- ....+.-...+. ...-..++.+.-.
T Consensus       165 ~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----------~~~v~~il-t~~rIl~~l~~~~~~~~~~~~l~~s~~dl~i  233 (381)
T KOG1764|consen  165 VSISPESSLLDAVLLLIKSRIHRVPVIDPE----------TGEVLYIL-TQRRILKFLWLNGRLLPLPSLLSKSLSDLGI  233 (381)
T ss_pred             eeecCcHHHHHHHHHHHhCCccceeeeccc----------ccceeeeh-hHHHHHHHHHHhhcccccHHHhhCCHHHhCc
Confidence            677788888899999999999999988511          11122222 2111 101111111110 0111223333321


Q ss_pred             ccC-CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHH
Q 028558           91 TKE-ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK  169 (207)
Q Consensus        91 ~~~-~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (207)
                      ..- .+..+..++++.+|++.|...+++.+||+|..|+.+|+++..|+............          .+..   +..
T Consensus       234 g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~----------~~~~---l~~  300 (381)
T KOG1764|consen  234 GTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNL----------DLSC---LSE  300 (381)
T ss_pred             chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCcc----------chhH---HHH
Confidence            111 48899999999999999999999999999999999999999999876533222110          0100   011


Q ss_pred             HHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       170 ~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                      +.      .....-..+++++.++++|.+++..|..+
T Consensus       301 ~~------~~~~~~~~~vvtc~~~ssL~~vi~~lv~~  331 (381)
T KOG1764|consen  301 AL------SHRPIRFEGVVTCRPTSTLAEVIDKLVAH  331 (381)
T ss_pred             Hh------hhcccccCccEEEeecchHHHHHHHHHhc
Confidence            11      11111123479999999999999998764

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.39  E-value=0.0055  Score=56.33  Aligned_cols=54  Identities=19%  Similarity=0.295  Sum_probs=50.4

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      ....+|.+  .+.++++++++..+..+++.-+.+|+.|+++..+.+|++|++|+.+
T Consensus       691 Dl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~  744 (762)
T KOG0474|consen  691 DLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLAR  744 (762)
T ss_pred             ccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhh
Confidence            45678999  8999999999999999999999999999998889999999999985

>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length

Probab=95.54  E-value=0.0017  Score=46.55  Aligned_cols=50  Identities=10%  Similarity=0.197  Sum_probs=35.1

Q ss_pred             CcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhh
Q 028558           22 RTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTA   73 (207)
Q Consensus        22 ~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~   73 (207)
                      .++...|++.+++|+|+|+ |..+.+.+  .+++..++++. +++| +.+.+.+.
T Consensus        51 ~di~~~a~~~~i~~iIltg-~~~~~~~v~~la~~~~i~vi~-t~~dtf~ta~~i~  103 (105)
T PF07085_consen   51 EDIQLAAIEAGIACIILTG-GLEPSEEVLELAKELGIPVIS-TPYDTFETARLIY  103 (105)
T ss_dssp             HHHHHHHCCTTECEEEEET-T----HHHHHHHHHHT-EEEE--SS-HHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEeC-CCCCCHHHHHHHHHCCCEEEE-ECCCHHHHHHHHh
Confidence            3445599999999999998 88888888  67888899999 9999 76766654

It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=95.31  E-value=0.048  Score=44.75  Aligned_cols=57  Identities=25%  Similarity=0.250  Sum_probs=50.5

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ...+.++..|   .+.++++-.+...++-++.++.+...|+|+=|.+-|.||..|++...
T Consensus       132 ~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqI  188 (293)
T COG4535         132 PFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQI  188 (293)
T ss_pred             cccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHH
Confidence            3467777776   78899999999999999999999999999989999999999999864

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.27  E-value=0.11  Score=48.00  Aligned_cols=113  Identities=19%  Similarity=0.177  Sum_probs=72.8

Q ss_pred             cccccccC---CceEECCC-CCHHHHHHHHHHcCCCEeEEEc--CCCcEEEEEehhhHHhhhcc-----cCCCCCCCCCC
Q 028558           86 GDFMTTKE---ELHVVKPT-TTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSI-----SGSGRADNSMF  154 (207)
Q Consensus        86 ~~vm~~~~---~~~~v~~~-~~v~ea~~~m~~~~~~~lpVvd--~~g~lvGiVt~~dl~~~~~~-----~~~~~~~~~~~  154 (207)
                      .++|.+.+   .+.+++.+ +++++....|.++.++.+||+=  +..+++|+|.++|+....-.     ++....+..+.
T Consensus       546 ~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~  625 (696)
T KOG0475|consen  546 IPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFN  625 (696)
T ss_pred             hhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccC
Confidence            45555532   25566554 8999999999999999999882  34689999999999754310     11100000000


Q ss_pred             CcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ...++.         .........+.++|...|+++...++++.++.+|++.|
T Consensus       626 ~~~~~~---------~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg  669 (696)
T KOG0475|consen  626 DPSPSA---------VAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLG  669 (696)
T ss_pred             CCCccc---------cCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhC
Confidence            000000         00011234578899999999999999999999998765

>PF00571 CBS: CBS domain CBS domain web page

Probab=94.98  E-value=0.018  Score=35.81  Aligned_cols=29  Identities=38%  Similarity=0.548  Sum_probs=26.0

Q ss_pred             ccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          179 VGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       179 v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ++++|+++++++++++++.++++.|.+++
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~   29 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNG   29 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHT
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcC
Confidence            45789999999999999999999998864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=94.85  E-value=0.23  Score=43.37  Aligned_cols=59  Identities=22%  Similarity=0.233  Sum_probs=50.5

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+-.+++.-..++..++..+++.+-+..|.+++-+.-.|||+=|.+.|+||..|++...
T Consensus       265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEI  323 (423)
T COG4536         265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEI  323 (423)
T ss_pred             ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHH
Confidence            34455665544689999999999999999999999999999999999999999999754

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.39  E-value=0.089  Score=46.42  Aligned_cols=53  Identities=15%  Similarity=0.283  Sum_probs=44.0

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++.+ +..  +..++++++++.+++..+..++.. ++|+|+ |+++|+|+..+++..+
T Consensus       327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       327 EVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL  379 (382)
T ss_pred             chhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence            3555 555  688999999999999998887654 888885 9999999999999754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.97  E-value=0.27  Score=42.40  Aligned_cols=51  Identities=24%  Similarity=0.338  Sum_probs=43.3

Q ss_pred             cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        88 vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+.+  .+.++.+++.+.+.+..+.+... .++|+|++|+++|++++..++.++
T Consensus       332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL  382 (386)
T COG4175         332 ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEAL  382 (386)
T ss_pred             cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHH
Confidence            4555  68889999999999988877655 689999999999999999999864

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=92.08  E-value=0.16  Score=47.97  Aligned_cols=59  Identities=27%  Similarity=0.352  Sum_probs=52.3

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC--CcEEEEEehhhHHhhh
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALD  141 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~--g~lvGiVt~~dl~~~~  141 (207)
                      ..+.|+++|.+  ++.++..+.|..|..+.+..+..+.+|+||+.  .-++|.|.++.|...+
T Consensus       586 h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll  646 (931)
T KOG0476|consen  586 HTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL  646 (931)
T ss_pred             eEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence            45689999999  99999999999999999988779999999843  4689999999998765

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.11  E-value=0.45  Score=39.86  Aligned_cols=78  Identities=21%  Similarity=0.194  Sum_probs=50.7

Q ss_pred             ccchhhhhhhhhhc-c-CCCCCcccccccccccC--CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhH
Q 028558           62 SSAVFASGTLTANS-A-APSSGVYTVGDFMTTKE--ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL  137 (207)
Q Consensus        62 s~~d~~~~~~~~~~-~-~~~~~~~~v~~vm~~~~--~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl  137 (207)
                      .|.+..+...+..+ . .+.....++.+.|.+..  +--.+.....-.+++..+...+...+||+|++|+++|.||..++
T Consensus       226 ~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l  305 (309)
T COG1125         226 NPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADL  305 (309)
T ss_pred             CccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHH
Confidence            55552244444332 1 12234556777776621  11123334555678888888999999999999999999999999


Q ss_pred             Hh
Q 028558          138 LA  139 (207)
Q Consensus       138 ~~  139 (207)
                      +.
T Consensus       306 ~~  307 (309)
T COG1125         306 LD  307 (309)
T ss_pred             hh
Confidence            75

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=90.56  E-value=0.68  Score=43.03  Aligned_cols=56  Identities=14%  Similarity=0.243  Sum_probs=49.8

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      ....+++|..  .+.++....+..-+.+++++-+.+...|.. +|++.|+||.+|+++.
T Consensus       638 ~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  638 RLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRH  693 (696)
T ss_pred             CcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHh
Confidence            3456788888  889999999999999999999999998876 7999999999999974

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=82.76  E-value=2.2  Score=40.63  Aligned_cols=57  Identities=12%  Similarity=0.035  Sum_probs=47.2

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~  142 (207)
                      ..+++-... .+..+-+.+++.++-.++.--+.++.+|++ -|+++|+|..++|.+++.
T Consensus       802 d~~~~~IDp-aPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie  858 (931)
T KOG0476|consen  802 DLDECAIDP-APFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIE  858 (931)
T ss_pred             chhhCCCCC-CceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHH
Confidence            344553331 577888999999999999999999999998 599999999999998763

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=80.31  E-value=1.3  Score=40.44  Aligned_cols=98  Identities=21%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             CCcccccccccccCCceEECCCCCHH-HHHHHHHHcCCCEeEEEcCCC--cEEEEEehhhHHhhhcccCCCCCCCCCCCc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVD-EALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~-ea~~~m~~~~~~~lpVvd~~g--~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~  156 (207)
                      .....++++|++-+++..+..+..+. +......+++++++||.+.+.  .+.|++....+ +.....       .    
T Consensus       201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~-~~~~~~-------~----  268 (498)
T KOG2118|consen  201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL-RLLQVE-------V----  268 (498)
T ss_pred             HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh-hhhccc-------c----
Confidence            34557899999988888888888776 666677899999999998542  23332222222 211000       0    


Q ss_pred             ccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhh
Q 028558          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHS  205 (207)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~  205 (207)
                                      .....++...+..+...++.++++.+.++.|++
T Consensus       269 ----------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~  301 (498)
T KOG2118|consen  269 ----------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQK  301 (498)
T ss_pred             ----------------ccccccchhhhccccccCCCcccHHHHHHHHhh
Confidence                            113456677777788889999999988888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
4gqv_A	166	Crystal Structure Of Cbs-pair Protein, Cbsx1 From A		3e-60
3sl7_A	180	Crystal Structure Of Cbs-Pair Protein, Cbsx2 From A		3e-49
4gqw_A	152	Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop		2e-48
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		5e-06
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		7e-06

>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From Arabidopsis Thaliana Length = 166

Iteration: 1
 Score =  227 bits (579), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/122 (88%), Positives = 116/122 (95%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
           LDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E TNLEDA
Sbjct: 62  LDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 121
Query: 200 AR 201
           A+
Sbjct: 122 AK 123

>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 108/119 (90%)
Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDF T ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
           ISG  + D ++FP+VDSTWKTFNE+QKL+SKT GK+VGDL TP+P+VVR++TNLEDAAR
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDSTNLEDAAR 122

>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop Deletion) From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/123 (77%), Positives = 102/123 (82%), Gaps = 14/123 (11%)
Query: 79  SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLL
Sbjct: 1   GSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60
Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
           ALDS               DSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E TNLED
Sbjct: 61  ALDS--------------GDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLED 106
Query: 199 AAR 201
           AA+
Sbjct: 107 AAK 109

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL++  D++++    
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP 216
Query: 145 GSGRADNSMF---PEVDSTWKTFNEVQKLLS 172
            + R +         V ++ +T   V+KL+ 
Sbjct: 217 NAARDEKGRLLVGAAVGTSPETMERVEKLVK 247

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G   V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KL
Sbjct: 137 GIITKKDIAAREG-KLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
           VGL++  DL+A      + R +N 
Sbjct: 194 VGLITMSDLVARKKYKNAVRDENG 217

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	5e-41
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-17
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-29
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-12
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-26
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-09
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-26
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-10
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-25
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	7e-10
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	4e-25
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	5e-11
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-21
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-12
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-20
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	6e-11
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-19
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-12
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	5e-19
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-05
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-18
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-11
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-18
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-12
1pvm_A	184	Conserved hypothetical protein TA0289; structural	9e-18
1pvm_A	184	Conserved hypothetical protein TA0289; structural	8e-13
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-17
1vr9_A	213	CBS domain protein/ACT domain protein; structural	9e-12
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-17
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-11
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-17
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	4e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-16
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-14
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-11
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	4e-16
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-12
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-16
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-14
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-09
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-06
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-15
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	6e-10
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-15
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	4e-12
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-15
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-14
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-10
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	9e-14
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-10
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-13
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-10
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	5e-13
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-09
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	7e-08
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	9e-13
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-12
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-10
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-12
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-10
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	1e-11
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	1e-11
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	6e-08
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	1e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	4e-08
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-08
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-05
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	1e-09
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	4e-07
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	2e-09
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	8e-07
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	4e-09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	2e-07
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	4e-09
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	7e-08
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	5e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-08
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	2e-08
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	2e-07
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	1e-07
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	3e-06
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	1e-07
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	1e-06
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	2e-06
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	5e-07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	3e-06
3fio_A	70	A cystathionine beta-synthase domain protein fused	8e-06
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	3e-05
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	4e-05
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	6e-05
2oux_A	286	Magnesium transporter; 10001B, structural genomics	2e-04

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score =  136 bits (345), Expect = 5e-41
 Identities = 89/119 (74%), Positives = 110/119 (92%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDFMT ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
           ISG  + D ++FP+VDSTWKTFNE+QKL+SKT GK+VGDLMTP+P+VVR++TNLEDAAR
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAAR 122

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 74.8 bits (184), Expect = 3e-17
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL----- 138
            VGD MT      VV+ +T +++A  +L+E +    PV+D D KL+G+++  +++     
Sbjct: 99  VVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ 156

Query: 139 ---ALDSISGSGRADNSMFPEVDS 159
                DSISG  + D ++FP+VDS
Sbjct: 157 IKRNADSISGRSQNDTNLFPDVDS 180

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score =  105 bits (265), Expect = 2e-29
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           V  V   ++   +  VV+  T ++E ++ ++E  +T    +  D KLVG++    LL   
Sbjct: 15  VKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLK-- 70

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                  +    F  +       + +++L++K       ++M   PV V   T LE+A +
Sbjct: 71  ------VSGFHFFGFIPKEELIRSSMKRLIAKN----ASEIML-DPVYVHMDTPLEEALK 119

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 51  TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110
                +         F        S+          + M        V   T ++EAL++
Sbjct: 64  PVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKL 120

Query: 111 LVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +++  I   PV+D+  ++VG ++  ++L
Sbjct: 121 MIDNNIQEMPVVDEKGEIVGDLNSLEIL 148

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 97.8 bits (244), Expect = 3e-26
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 22/118 (18%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D M + E++  V+    ++ AL +LV+   +  PV+D  +KL GL+S   +  LD I
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMI--LDGI 73

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
            G  R +     E+                     V  +M     V++   +   A  
Sbjct: 74  LGLERIEFERLEEMK--------------------VEQVMKQDIPVLKLEDSFAKALE 111

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V   M     + V+K   +  +ALE+ ++        +++D    G+++   +L
Sbjct: 87  MKVEQVMKQD--IPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAIL 138

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 97.5 bits (243), Expect = 4e-26
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 22/118 (18%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TV  F+   +++  V+P   +D AL +L +   +  PV+D  +KL GL+S   +  +D+I
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMM--MDAI 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
            G  R +                      +     V ++M      +R   +L  A  
Sbjct: 70  LGLERIE--------------------FERLETMKVEEVMNRNIPRLRLDDSLMKAVG 107

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V + M     +  ++   ++ +A+ ++V        V +DD    G+ +  ++L
Sbjct: 83  MKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVL 134

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 95.6 bits (238), Expect = 2e-25
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 22/118 (18%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    ++     
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM----- 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                               F   +    K +   V ++M      +     +     
Sbjct: 70  -----------------NSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFG 110

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 54.8 bits (132), Expect = 7e-10
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            TV + M T   +  +     + +   +++        V +D+    G+ +   +L
Sbjct: 86  ITVEEVMLTD--IPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVL 137

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 84.7 bits (210), Expect = 3e-21
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 21/118 (17%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLLA    
Sbjct: 6   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLA---- 59

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                         +S+ +   +   L  +T    + ++M      V     L+++A 
Sbjct: 60  ------------AQESSLQRSAQGDSLAFETP---LFEVMHTDVTSVAPQAGLKESAI 102

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
            + + M T  ++  V P   + E+   + + +I   PV+  D  LVG+++D D +    +
Sbjct: 79  PLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFVTIAIN 135

Query: 143 ISGSGRA 149
           +      
Sbjct: 136 LLELQEE 142

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 82.3 bits (204), Expect = 2e-20
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 29/118 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D MT    +   K    V EA E +++ +I+  PVIDD+ K++G+V+  D+      
Sbjct: 9   KVKDVMTKN--VITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIG----- 61

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                   +  L  T    +GD+MT   + + E  ++ +A +
Sbjct: 62  ------------------YNLIRDKYTLETT----IGDVMTKDVITIHEDASILEAIK 97

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILV-----EKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+GD MT   ++  +    ++ EA++ +      E+ I   PV+D + KLVG++SD D++
Sbjct: 74  TIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 79.1 bits (196), Expect = 3e-19
 Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 21/119 (17%)

Query: 84  TVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
            +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L  
Sbjct: 9   PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL-- 66

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                     ++ ++  +      V + L + +                +   L     
Sbjct: 67  ------IKGGIYNDLSLS------VGEALMRRSD------DFEGVYTCTKNDKLSTIMD 107

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +  +    E ++       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 78  SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 79.6 bits (196), Expect = 5e-19
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+      +LVG V   DL
Sbjct: 12  LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 71

Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM--VGDLMTPAPVVVRETTN 195
           +          A       V ++   F E    L         + +++  +P  V + T 
Sbjct: 72  IISIE-----NARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTP 126

Query: 196 LEDAAR 201
           +E    
Sbjct: 127 MEIVVD 132

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + +        V   T ++  ++I  +  +    V  +  +L+G+++  D+L
Sbjct: 109 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 160

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 75.6 bits (187), Expect = 4e-18
 Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 33/117 (28%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V D ++            ++ EA +IL++  I   P++D+  KLVG+++ +D+       
Sbjct: 3   VKDILSKP--PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA------ 54

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
              +A                         N K + ++MT   +   E   ++  A 
Sbjct: 55  ---KA----------------------LAQNKKTIEEIMTRNVITAHEDEPVDHVAI 86

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+ + MT    +        VD     + +  I+G PV+DD  ++VG+V+  D+ 
Sbjct: 63  TIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS 115

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 76.3 bits (188), Expect = 9e-18
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 28/118 (23%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+  ++     
Sbjct: 10  RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSII----- 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                             +     +K         +  +M      V+   +++D A 
Sbjct: 63  -----------------KRFIPRNKKPDEVP----IRLVMRKPIPKVKSDYDVKDVAA 99

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 63.2 bits (154), Expect = 8e-13
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +   M     +  VK    V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 76  PIRLVMRKP--IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 128

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 76.7 bits (189), Expect = 1e-17
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 35/118 (29%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+  DLL LD  
Sbjct: 14  KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD-- 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                              V + ++     V E  N+  A  
Sbjct: 70  -------------------------------LDSSVFNKVSLPDFFVHEEDNITHALL 96

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
           +V + ++       V     +  AL + +E +    PV+D++ +L G VS +D L AL  
Sbjct: 73  SVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE 130

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETT 194
                         ++       +V   L+ +N  ++  + T +    RE  
Sbjct: 131 ALAMDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRSGDGKREVL 182

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 74.5 bits (184), Expect = 1e-17
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 30/118 (25%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D M T  ++  +  T ++++ L   VE       V+ +    VG+V+ +D+L     
Sbjct: 2   RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVL----- 53

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                             +   E   L        V ++M    V +     +++AA 
Sbjct: 54  ------------------EAIAEGDDLAEVK----VWEVMERDLVTISPRATIKEAAE 89

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + M     L  + P  T+ EA E +V+  +    V +DD +++G++S  D+L
Sbjct: 66  KVWEVMERD--LVTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 117

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 73.7 bits (182), Expect = 3e-17
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 28/118 (23%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++     
Sbjct: 9   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIV----- 61

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                 +        N    G+L   +   V    ++++   
Sbjct: 62  ---------------------IKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLN 98

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 57.2 bits (139), Expect = 4e-11
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T G+       ++ V    ++ E L ++ E ++   PVI +  +LVG+V++ D+ 
Sbjct: 75  TAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 126

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 19/120 (15%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
              + D++T   ++ V  P   + +    +V       PV+ +  +LVG+++  D + L 
Sbjct: 147 NEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEG-RLVGIITSTDFIKL- 202

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                          + S W   +     + +     + ++M    +  +E   L+  A 
Sbjct: 203 ---------------LGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAE 247

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 19/118 (16%), Positives = 47/118 (39%), Gaps = 16/118 (13%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSI 143
           +      K  +  V PTTT+ +AL  + E +    PV++  + K+VG+++  D++     
Sbjct: 6   MKIAQNKK--IVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDF--- 60

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                 + ++       + V ++M    + ++E  ++++A  
Sbjct: 61  ----------MGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIE 108

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + M    ++   K    + +  EI+V   I   PV+D++ ++ G++++ D+L
Sbjct: 224 RMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL 276

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 70.7 bits (174), Expect = 4e-16
 Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 33/119 (27%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V ++M T  ++  V     +++  +++ EK I    V+D + K VG++++ D+      
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDI------ 55

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAAR 201
                                  V+ +    + +    + MT + + +RE + +  A  
Sbjct: 56  -----------------------VKAIGKGKSLETKAEEFMTASLITIREDSPITGALA 91

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              +FMT    L  ++  + +  AL ++ +  I   PV+DD   L G++S  D+ 
Sbjct: 68  KAEEFMTAS--LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDIT 120

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 73.4 bits (180), Expect = 8e-16
 Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 13/120 (10%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALD 141
           +   D + T  +L V   +  V +A   LV   +   P+ D      VG+++  D + + 
Sbjct: 35  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINI- 93

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                      +     S      E+++   +T  ++         V +    +L DA  
Sbjct: 94  -----------LHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVS 142

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 68.1 bits (166), Expect = 7e-14
 Identities = 27/169 (15%), Positives = 52/169 (30%), Gaps = 22/169 (13%)

Query: 35  CLLLSRPGCRVFSVLATSSDRVSA-LRRSSAVFASGTLTANSAAPSSGVYTVGDFMT-TK 92
              L R       V+   S      L     +            P     ++ +    T 
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTY 200

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
             + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L        A   
Sbjct: 201 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL--------AAEK 252

Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
            +  +D +     + +                   +       LE    
Sbjct: 253 TYNNLDVSVTKALQHR------------SHYFEGVLKCYLHETLEAIIN 289

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +V   +  +    E +       T++  +  LVE  +    V+D+   + G+VS  D+L
Sbjct: 260 SVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 19/114 (16%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSG 147
             + + L  + P  ++ +A+  L+  +I   PVID +    + +++   +L    +  + 
Sbjct: 122 QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE 181

Query: 148 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                  +SK+  + +         +VR TT +  A  
Sbjct: 182 FPKPE-----------------FMSKSLEE-LQIGTYANIAMVRTTTPVYVALG 217

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 29/118 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +  +MT K  L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D+      
Sbjct: 8   PIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI------ 59

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                    + P +                     V  +MT   +     T L +  R
Sbjct: 60  -----IRRVIVPGLPYDIP----------------VERIMTRNLITANVNTPLGEVLR 96

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT    L      T + E L  + E RI    + ++  K+VG+ +  DLL
Sbjct: 73  PVERIMTRN--LITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 124

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 32/120 (26%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V DF +      V+    +V +A+  +  + +    V+D D  LVG++S  DLL     
Sbjct: 18  QVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL----- 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAAR 201
                             +     Q+L S      V  +MT  P   V R    + D A+
Sbjct: 70  ------------------RASIGQQELTSVP----VHIIMTRMPNITVCRREDYVMDIAK 107

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 60.8 bits (148), Expect = 4e-12
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLL 138
            V   MT    + V +    V +  + L+EK+I   PVI D    ++++G V+  ++ 
Sbjct: 82  PVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMT 139

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 70.6 bits (173), Expect = 6e-15
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 21/118 (17%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +   M       ++     +  A + + E  I    V ++  K+ GL++  DLL     
Sbjct: 21  NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLL----- 71

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                           ++   +  Q  L   +   + D MTP PV V  T++   A  
Sbjct: 72  ------------STVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAIN 117

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 44/160 (27%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
            + D+MT       V  T+    A+ I+V +     PV+D + K VG+V++ + L     
Sbjct: 94  PIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 151

Query: 143 ISGSGRADNSMFPEVDSTWK--TFNEVQKLLSKT----------NGKMVG---------- 180
           +         M  +V + +K    ++  KL+ +           + K+VG          
Sbjct: 152 LDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQ 211

Query: 181 -------------------DLMTPAPVVVRETTNLEDAAR 201
                              D+M    V + E  ++  AA 
Sbjct: 212 LAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAA 251

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T   L  +    +V+ A   ++ KRI    +++ D  + G++++ DLL
Sbjct: 228 VVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 280

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 64.6 bits (158), Expect = 9e-14
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 28/123 (22%)

Query: 80  SGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + TV   +  K   +  + P  +V  A++ +    I    V+ D+ KLVG++++ D  
Sbjct: 3   GHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDF- 60

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                    +                              V ++MT     V      ED
Sbjct: 61  -SRKSYLLDKPVKDT------------------------QVKEIMTRQVAYVDLNNTNED 95

Query: 199 AAR 201
              
Sbjct: 96  CMA 98

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT +  +  V    T ++ + ++ E R+   PV+DD  K++GL+S  DL+
Sbjct: 75  QVKEIMTRQ--VAYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 126

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 27/119 (22%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
            V D +  K  ++  V P  ++ EA   L   +I    V D D  ++G+ ++ DL+   +
Sbjct: 25  FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK--A 82

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
           ++G G A                             V   MT   V  +  +  +    
Sbjct: 83  VAGQGAASLQQ------------------------SVSVAMTKNVVRCQHNSTTDQLME 117

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +V   MT    +   +  +T D+ +EI+   R    PV ++  +L G++S  D++
Sbjct: 94  SVSVAMTKN--VVRCQHNSTTDQLMEIMTGGRFRHVPVEENG-RLAGIISIGDVV 145

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 65.4 bits (159), Expect = 5e-13
 Identities = 15/113 (13%), Positives = 40/113 (35%), Gaps = 20/113 (17%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR 148
           + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L        
Sbjct: 194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL-------- 245

Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
               ++ ++  +       +                       +   L     
Sbjct: 246 IKGGIYNDLSLSVGEALMRRS------------DDFEGVYTCTKNDKLSTIMD 286

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 56.1 bits (135), Expect = 1e-09
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 84  TVGDFMT----TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +       E ++       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 257 SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 12/120 (10%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALD 141
            T  D +     L V+  +  V ++L +L++  I   P+ D    +  GL++  D + + 
Sbjct: 30  KTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVI 89

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
               S      +  +            +L    + +    +       +  +  L +A  
Sbjct: 90  QYYFSNPDKFELVDK-----------LQLDGLKDIERALGVDQLDTASIHPSRPLFEACL 138

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 26/113 (23%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALDSISGSGR 148
           +   + P+  + EA   ++E R    P+ID D       +V +++ Y +L          
Sbjct: 123 DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILK--------- 173

Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                       +   N  +    K     +  +        + TT + D  +
Sbjct: 174 ------------FVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQ 214

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 64.4 bits (157), Expect = 9e-13
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 28/117 (23%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           +   +    ++ VVK   T+ +A ++++E       V+D   K VG+++  D++      
Sbjct: 62  LAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR---- 115

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                       K  G  +         +V E T L+ A +
Sbjct: 116 ----------------------YFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALK 150

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 35/117 (29%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
           V   MT       +    T + ALE+  + ++  FPV++ + KLVG++S           
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKR-------- 52

Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                    +L   + + +  L+     VV+E   L+ AA+
Sbjct: 53  -------------------------ILVNPDEEQLAMLVKRDVPVVKENDTLKKAAK 84

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL----A 139
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + DLL     
Sbjct: 127 EIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 184

Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
           +  +  +  A +S    +  +  T    +  L   N   V ++MT   +V      + + 
Sbjct: 185 VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKP-VAEIMTRDVIVATPHMTVHEV 243

Query: 200 AR 201
           A 
Sbjct: 244 AL 245

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT   ++ V  P  TV E    + +  I   PVI  +  L+GL+ D+DLL
Sbjct: 222 PVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 31/129 (24%)

Query: 77  APSSGVYTVGDFMTTKE----ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            P S   TV   +  K      ++ V     V +A++++ EK I    V+D D  + G+V
Sbjct: 1   GPGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIV 59

Query: 133 SDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRE 192
           ++ D      +    R+  +                          V ++MT     V  
Sbjct: 60  TERDYAR--KVVLQERSSKAT------------------------RVEEIMTAKVRYVEP 93

Query: 193 TTNLEDAAR 201
           + + ++   
Sbjct: 94  SQSTDECMA 102

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT K  +  V+P+ + DE + ++ E R+   PV+D   KL+GL+S  DL+
Sbjct: 79  RVEEIMTAK--VRYVEPSQSTDECMALMTEHRMRHLPVLDGG-KLIGLISIGDLV 130

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 59.6 bits (144), Expect = 1e-11
 Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 21/120 (17%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALD 141
            V  FM     +  +   T ++E ++++    +T +P+++      LVG+V    L+   
Sbjct: 14  RVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQAL 71

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                 RA        D   +                      P  + +   T L  A  
Sbjct: 72  QAEPPSRAPGHQQCLQDILARGCP-----------------TEPVTLTLFSETTLHQAQN 114

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +     T+     +   TT+ +A  +     +    V     + VG VS  ++ 
Sbjct: 89  ILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG-RAVGCVSWVEMK 142

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 16/118 (13%), Positives = 30/118 (25%), Gaps = 31/118 (26%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T      T  +  V     +  +A   L        PV+D + + +G+V    LL     
Sbjct: 6   TFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKG 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
             + +                            + +G+ +       R    L D   
Sbjct: 63  WPTVK----------------------------EKLGEELLETVRSYRPGEQLFDNLI 92

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            +G+ +     +   +P   + + L  +   + +  P+ D+D +  G+VS   +L 
Sbjct: 69  KLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILG 122

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 58.4 bits (140), Expect = 1e-10
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           D++ TK+ L  V     V++    + E R + +PVID++ K+VG ++ + L+
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 50.7 bits (120), Expect = 4e-08
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D      ++  + P  ++  A  I+ +K +   PV D +  L+G++S  ++ A    
Sbjct: 8   KVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 65

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA 186
                        +D+   T +   + +++      G ++  A
Sbjct: 66  IWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAA 108

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 57.2 bits (138), Expect = 4e-10
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +  +    + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 310

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 20/109 (18%)

Query: 91  TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 150
           T   L      T V + +++L EK I+  P+++ +  L+ +    D++ L          
Sbjct: 191 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL--------IQ 242

Query: 151 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
           +  +  +D +      V + L K      G          R T  L+  
Sbjct: 243 DGDYSNLDLS------VGEALLKRPANFDG------VHTCRATDRLDGI 279

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDS 142
           T  D + T   L V   T  V  +L +L    I   P+ D +  K  GL++  D + +  
Sbjct: 23  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK 82

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                 +      E+D          +LL     +     + P  + V    +L DA  
Sbjct: 83  YYYQSSSFPEAIAEIDK--------FRLLGLREVERKIGAIPPETIYVHPMHSLMDACL 133

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V D MT   +L      T + EA +I+ EK++   P+IDDD  L  +V
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIV 210

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 24/109 (22%), Positives = 32/109 (29%), Gaps = 36/109 (33%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGRADNSMF 154
           VKP  T  + L I          V DD      L+GLV+  D                  
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDY----------P-----I 154

Query: 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAAR 201
               +  K                V D+MTP    V   + T L +A +
Sbjct: 155 DLTQTETK----------------VSDMMTPFSKLVTAHQDTKLSEANK 187

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT + EL V     T+ EA EIL   +    P+++D  +LV +++  DL
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDL 227

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 35/110 (31%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGRADNSM 153
           V+ P+ TV + LE  +    +G P+ +      KLVG+V+  D+                
Sbjct: 120 VLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDI--------------DF 165

Query: 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAAR 201
             E D T                  + ++MTP    VV      L++A  
Sbjct: 166 LAEKDHTTL----------------LSEVMTPRIELVVAPAGVTLKEANE 199

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 54.4 bits (132), Expect = 4e-09
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL+
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLI 204

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 34/106 (32%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V P  TV EA++++ E +I G PV+D++ +LVGL+++ D+          R     F E 
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV----------R-----F-EK 151

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAAR 201
           + + K                + DLMTP    +V     +LE A  
Sbjct: 152 NLSKK----------------IKDLMTPREKLIVAPPDISLEKAKE 181

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 54.4 bits (132), Expect = 4e-09
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V   MT KE L  VK   T  E  E + + R+    V++D+++L G++
Sbjct: 151 VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMI 198

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 34/106 (32%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V+P  T+ + +E+       GFPV+ ++ +LVG+++  D+          R     F   
Sbjct: 102 VRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV----------R-----F-VT 145

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAAR 201
           D T                  V  +MTP      V+E     +   
Sbjct: 146 DLTKS----------------VAAVMTPKERLATVKEGATGAEVQE 175

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 35/121 (28%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALD 141
              + +        +  T T+ E    L + R+    +   D+  + V +VS+ D+    
Sbjct: 6   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDI---- 59

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN-GKMVGDLMTPAPVVVRETTNLEDAA 200
                                    ++ +  + +       +   +P+ V +T  +  AA
Sbjct: 60  -------------------------LRAVAQRLDLDGPAMPIAN-SPITVLDTDPVHVAA 93

Query: 201 R 201
            
Sbjct: 94  E 94

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                  +      V  T  V  A E +    I    V++ + +LVG++S  DL 
Sbjct: 72  PAMPIANS---PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 35/104 (33%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           + P  TVD AL ++ +  I G PV++D+ K+VG+++  D+           A        
Sbjct: 106 IAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDI----------AAREG----- 149

Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                              K+V +LMT   + V E+  +E+A +
Sbjct: 150 -------------------KLVKELMTKEVITVPESIEVEEALK 174

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KLVGL+
Sbjct: 152 VKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI 197

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 31/120 (25%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDLLALD 141
            V D M T +E+  V    T+ +AL  +  K   +T   + DDD  ++G+ +D DL    
Sbjct: 29  RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTA--ICDDDMNIIGIFTDGDL---- 82

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                 R             + F+    +   +    + D+MT   + +R  T   DA  
Sbjct: 83  ------R-------------RVFDTGVDMRDAS----IADVMTRGGIRIRPGTLAVDALN 119

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           ++ D MT       ++P T   +AL ++  + IT   V D D  L+G+V  +DLL
Sbjct: 96  SIADVMTRGG--IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLL 147

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT KE+L      TT+ EA +IL + +I   P++D++  L GL+
Sbjct: 177 ISDVMT-KEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLI 223

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 35/107 (32%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
           + P   V +A  ++ + RI+G PV++  D+ KLVG++++ D+          R     F 
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM----------R-----F- 169

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP-VVVRETTNLEDAAR 201
             D + K                + D+MT    +     T L +A +
Sbjct: 170 IQDYSIK----------------ISDVMTKEQLITAPVGTTLSEAEK 200

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + + MT  E L      T ++ A  IL E RI   P++D+  +L GL+
Sbjct: 154 ISEHMT-SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI 200

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 35/107 (32%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFP 155
           + P   V EA E++   RI+G P+++   + KLVG++++ D+          R     F 
Sbjct: 103 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM----------R-----F- 146

Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP-VVVRETTNLEDAAR 201
             D                    + + MT    V     T+LE A R
Sbjct: 147 ISDYNAP----------------ISEHMTSEHLVTAAVGTDLETAER 177

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 21/143 (14%)

Query: 78  PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYD 136
             S   T  + M   E    + P +       IL +      FPVID +  L+G +S  +
Sbjct: 448 DRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKE 507

Query: 137 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL-----------------LSKTNGKMV 179
           ++           +              +  + +                  + T  +  
Sbjct: 508 IVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPT 567

Query: 180 GDL---MTPAPVVVRETTNLEDA 199
             L      +P+VV   + +   
Sbjct: 568 SSLVVPCDVSPIVVTSYSLVRQL 590

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL---DSISGSG 147
                ++K   TV EA+ ++ + R+   PV+D DD  ++G+V    L+      +   S 
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSD 451

Query: 148 RADNSM---FPEVDSTWKTFNEVQKLLSKTNGKMVGD 181
            A  ++      ++ + +   ++ ++L      ++  
Sbjct: 452 PAIKALNKRVIRLNES-EILGKLARVLEVDPSVLILG 487

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 40/123 (32%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
             G  MT   E   V+   TV+E L  L         I    V+D+  +L G++S     
Sbjct: 156 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLS----- 208

Query: 139 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 198
                                       ++ L+       V ++M P  V VR  T+ E+
Sbjct: 209 ----------------------------LRDLIVADPRTRVAEIMNPKVVYVRTDTDQEE 240

Query: 199 AAR 201
            AR
Sbjct: 241 VAR 243

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 38/122 (31%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLA 139
             +G +     ++ V+    TV +A                ++D+  K +G V       
Sbjct: 54  NEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVR------ 105

Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
                                         +      + +  L++     +   T L DA
Sbjct: 106 ---------------------------RYDIFKHEPHEPLISLLSEDSRALTANTTLLDA 138

Query: 200 AR 201
           A 
Sbjct: 139 AE 140

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 44/126 (34%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-------VIDDDWKLVGLVSDY 135
              G  MT   E   V+   TV+E L  L  +R            V+D+  +L G++S  
Sbjct: 135 DEAGGLMTP--EYVAVREGMTVEEVLRFL--RRAAPDAETIYYIYVVDEKGRLKGVLS-- 188

Query: 136 DLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 195
                                          ++ L+       V ++M P  V VR  T+
Sbjct: 189 -------------------------------LRDLIVADPRTRVAEIMNPKVVYVRTDTD 217

Query: 196 LEDAAR 201
            E+ AR
Sbjct: 218 QEEVAR 223

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 44/126 (34%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-------VIDDDWKLVGLVSDY 135
            T G  MTT  E   +    TV  A+ +L  K             V+D +  LVG++S  
Sbjct: 137 ETAGAIMTT--EFVSIVANQTVRSAMYVL--KNQADMAETIYYVYVVDQENHLVGVIS-- 190

Query: 136 DLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 195
                                          ++ L+   +  ++ D++    + V    +
Sbjct: 191 -------------------------------LRDLIVNDDDTLIADILNERVISVHVGDD 219

Query: 196 LEDAAR 201
            ED A+
Sbjct: 220 QEDVAQ 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.65
3ddj_A	296	CBS domain-containing protein; structural genomics	99.65
4esy_A	170	CBS domain containing membrane protein; structural	99.65
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.64
3ddj_A	296	CBS domain-containing protein; structural genomics	99.6
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.6
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.6
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.59
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.59
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.58
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.56
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.55
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.55
4esy_A	170	CBS domain containing membrane protein; structural	99.55
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.54
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.54
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.53
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.53
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.52
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.52
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.51
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.51
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.51
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.51
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.5
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.5
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.5
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.5
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.5
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.49
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.49
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.49
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.49
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.48
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.48
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.47
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.47
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.47
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.47
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.47
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.46
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.46
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.46
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.46
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.45
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.45
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.45
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.45
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.45
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.45
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.44
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.44
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.43
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.43
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.42
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.42
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.41
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.39
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.39
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.39
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.39
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.38
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.38
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.38
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.38
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.38
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.38
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.38
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.38
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.38
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.38
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.37
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.37
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.37
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.36
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.36
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.35
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.35
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.34
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.34
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.34
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.33
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.33
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.33
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.33
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.33
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.32
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.32
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.32
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.31
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.3
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.3
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.3
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.3
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.29
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.29
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.28
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.26
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.24
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.24
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.22
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.19
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.18
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.15
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.13
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.12
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.11
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.07
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.05
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.02
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.01
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.99
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.98
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.97
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.96
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.94
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.93
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.93
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.91
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.87
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.86
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.77
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.69
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.68
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.68
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.59
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.35
3fio_A	70	A cystathionine beta-synthase domain protein fused	97.02
2ioj_A	139	Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG,	93.07

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.65  E-value=7.1e-16  Score=126.46  Aligned_cols=155  Identities=17%  Similarity=0.224  Sum_probs=123.5

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc-CCceeeeecccchhhhhh-------hhhhccCC---C
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS-SDRVSALRRSSAVFASGT-------LTANSAAP---S   79 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~-~~~~~~~~~s~~d~~~~~-------~~~~~~~~---~   79 (207)
                      +++++.++.+..+|.+.|.+++++++.|.+           + ..++.+++ |..|....-       .+......   .
T Consensus        13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d-----------~~~~~~~Giv-t~~di~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T 3kh5_A           13 KIVTVYPTTTIRKALMTMNENKYRRLPVVN-----------AGNNKVVGII-TSMDIVDFMGGGSKYNLIREKHERNFLA   80 (280)
T ss_dssp             CCCCBCTTSBHHHHHHHHHHHCCCEEEEEC-----------TTTCBEEEEE-EHHHHHHHTTTSGGGHHHHTTSTTCHHH
T ss_pred             CcEEECCCCcHHHHHHHHHhCCCcEeeEEE-----------CCCCeEEEEE-EHHHHHHHhcccchhhhhhhccccchhH
Confidence            788999999999999999999999999996           3 56777887 777721110       00100000   0


Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      ....+++++|++  ++.++++++++.++++.|.+++++++||+|++|+++|++|.+|+++......              
T Consensus        81 ~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------  144 (280)
T 3kh5_A           81 AINEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKI--------------  144 (280)
T ss_dssp             HTTSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGS--------------
T ss_pred             HhhhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcC--------------
Confidence            113589999999  9999999999999999999999999999998899999999999987542100              


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                    ....++.++|.++++++++++++.++++.|.+++
T Consensus       145 --------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~  178 (280)
T 3kh5_A          145 --------------DENEVIDDYITRDVIVATPGERLKDVARTMVRNG  178 (280)
T ss_dssp             --------------CTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHT
T ss_pred             --------------CCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcC
Confidence                          1234789999999999999999999999998764

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.65  E-value=2.4e-16  Score=131.02  Aligned_cols=156  Identities=19%  Similarity=0.266  Sum_probs=125.1

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +++++.++.+..+|.+.|.++++++++|++           +..++.+++ +..|..  +.+..    .....+++++|+
T Consensus       102 ~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd-----------~~~~lvGiv-t~~dl~--~~~~~----~~~~~~v~~~m~  163 (296)
T 3ddj_A          102 NPVTVYNTSDEFTAINIMVTRNFGSLPVVD-----------INDKPVGIV-TEREFL--LLYKD----LDEIFPVKVFMS  163 (296)
T ss_dssp             SCCCEETTSCHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHG--GGGGG----SCCCCBHHHHSB
T ss_pred             CCEEEcCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCcEEEEE-eHHHHH--Hhhhc----ccccccHHHhhc
Confidence            677899999999999999999999999997           567788888 887731  11111    123458999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHH
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (207)
                      +  ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++....                .+   ..+.. 
T Consensus       164 ~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~----------------~~---~~~~~-  221 (296)
T 3ddj_A          164 T--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK----------------AV---DKLDP-  221 (296)
T ss_dssp             C--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH----------------HH---HHTCT-
T ss_pred             C--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH----------------HH---hhcCh-
Confidence            8  89999999999999999999999999999988999999999999975410                00   00000 


Q ss_pred             HhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       171 ~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                       ......++.++|.++++++++++++.+++++|.+++
T Consensus       222 -~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~  257 (296)
T 3ddj_A          222 -DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKR  257 (296)
T ss_dssp             -HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHT
T ss_pred             -hhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcC
Confidence             012457899999999999999999999999998764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.65  E-value=8.7e-16  Score=118.14  Aligned_cols=119  Identities=20%  Similarity=0.217  Sum_probs=89.8

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      .++|+++|++  +++++++++++.+|++.|.+++++++||+|++|+++|+||.+|+++.........     ........
T Consensus        17 ~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~-----~~~~~~~~   89 (170)
T 4esy_A           17 QVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYE-----ASEILSRA   89 (170)
T ss_dssp             TSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHH-----HHHHHTTT
T ss_pred             CCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccc-----hhhhhhhc
Confidence            4689999999  9999999999999999999999999999999999999999999997542111000     00000000


Q ss_pred             hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ................++.++|+++++++++++++.+++++|.++|
T Consensus        90 ~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~  135 (170)
T 4esy_A           90 IPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHG  135 (170)
T ss_dssp             SCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTT
T ss_pred             cchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcC
Confidence            0011222333334567899999999999999999999999999875

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.64  E-value=4.2e-16  Score=131.03  Aligned_cols=158  Identities=14%  Similarity=0.182  Sum_probs=122.3

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCc-----eeeeecccchhhhhhhhhhccCCCCCcc
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDR-----VSALRRSSAVFASGTLTANSAAPSSGVY   83 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~-----~~~~~~s~~d~~~~~~~~~~~~~~~~~~   83 (207)
                      +.++++++++.+..+|.+.|.++++++++|++           +...     +.+++ |..|... .+............
T Consensus       121 ~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd-----------~~~~~~~~~l~Giv-t~~di~~-~l~~~~~~~~~~~~  187 (323)
T 3t4n_C          121 QLDTASIHPSRPLFEACLKMLESRSGRIPLID-----------QDEETHREIVVSVL-TQYRILK-FVALNCRETHFLKI  187 (323)
T ss_dssp             ---CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-----------ECTTTCCEEEEEEE-EHHHHHH-HHHHHCGGGGGCCS
T ss_pred             CCCceEeCCCCcHHHHHHHHHhCCeeEEEEEe-----------cCCCCCccceEEEe-cHHHHHH-HHHhcCCchhhhhC
Confidence            45788999999999999999999999999996           3332     77888 8888311 11111000112345


Q ss_pred             ccccc---ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           84 TVGDF---MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        84 ~v~~v---m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      +++++   |++  ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++.....                
T Consensus       188 ~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~----------------  249 (323)
T 3t4n_C          188 PIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG----------------  249 (323)
T ss_dssp             BGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTT----------------
T ss_pred             cHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhc----------------
Confidence            78999   888  899999999999999999999999999999889999999999999864210                


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccC------CCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                .......++.++|++      +++++++++++.+++++|.+++
T Consensus       250 ----------~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~  292 (323)
T 3t4n_C          250 ----------IYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR  292 (323)
T ss_dssp             ----------HHHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSC
T ss_pred             ----------hhhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhC
Confidence                      001235678999987      7899999999999999998864

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.60  E-value=3.7e-15  Score=123.77  Aligned_cols=150  Identities=16%  Similarity=0.131  Sum_probs=121.7

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC--------CCCCc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA--------PSSGV   82 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~--------~~~~~   82 (207)
                      +++++.++.+..+|.+.|.+++++++.|+            + .++.+++ |..|...  .+.....        .....
T Consensus        29 ~~~~v~~~~~v~~a~~~m~~~~~~~~~V~------------d-~~l~Giv-T~~Di~~--~~~~~~~~~~~~~~~~~~~~   92 (296)
T 3ddj_A           29 NPPILSKEDRLGSAFKKINEGGIGRIIVA------------N-EKIEGLL-TTRDLLS--TVESYCKDSCSQGDLYHIST   92 (296)
T ss_dssp             SCCEECTTSBHHHHHHHTTGGGCCEEEEE------------S-SSEEEEE-EHHHHHG--GGTTCC---CCHHHHHHHHT
T ss_pred             CCcEECCCccHHHHHHHHHHCCCceEEEE------------C-CeEEEEE-eHHHHHH--HhcccccccccchhhHHHhc
Confidence            67899999999999999999999999999            3 5566777 7777311  1111000        00124


Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      .+++++|++  +++++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++....                   
T Consensus        93 ~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~-------------------  151 (296)
T 3ddj_A           93 TPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD-------------------  151 (296)
T ss_dssp             SBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG-------------------
T ss_pred             ccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhc-------------------
Confidence            579999999  99999999999999999999999999999988999999999999975421                   


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                .....++.++|.++++++++++++.+++++|.+++
T Consensus       152 ----------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~  186 (296)
T 3ddj_A          152 ----------LDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRG  186 (296)
T ss_dssp             ----------SCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHT
T ss_pred             ----------ccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcC
Confidence                      11345799999999999999999999999998764

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.60  E-value=1.4e-15  Score=124.69  Aligned_cols=161  Identities=12%  Similarity=0.196  Sum_probs=124.0

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..+|.+.|.++++++++|++           +..++.|++ +..|..  +.+....   ....+++++|+
T Consensus        93 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~--~~~~~~~---~~~~~v~~~m~  155 (280)
T 3kh5_A           93 NVITLKENADIDEAIETFLTKNVGGAPIVN-----------DENQLISLI-TERDVI--RALLDKI---DENEVIDDYIT  155 (280)
T ss_dssp             SCCCEETTCBHHHHHHHHHHTTCSEEEEEC-----------TTCBEEEEE-EHHHHH--HHHGGGS---CTTCBSGGGCB
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCCEEEEEc-----------CCCEEEEEE-EHHHHH--HHHhhcC---CCCCCHHHHhC
Confidence            678899999999999999999999999997           567788888 888831  2222221   22347999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHH
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  170 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (207)
                      +  ++.++++++++.++++.|.+++++++||++ +|+++|+||.+|+++......              .|..+..  ..
T Consensus       156 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~Givt~~dl~~~~~~~~--------------~~~~~~~--~~  216 (280)
T 3kh5_A          156 R--DVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGSDW--------------AFNHMQT--GN  216 (280)
T ss_dssp             C--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHTSHH--------------HHHHHHS--CC
T ss_pred             C--CCeEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHhhhh--------------hhhhhcc--cc
Confidence            8  899999999999999999999999999994 799999999999998641100              0000000  00


Q ss_pred             HhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       171 ~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      .......++.++|+++++++++++++.+++++|.+++
T Consensus       217 ~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~  253 (280)
T 3kh5_A          217 VREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTND  253 (280)
T ss_dssp             THHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHT
T ss_pred             hhhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCC
Confidence            0011346789999999999999999999999998764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.60  E-value=7.7e-15  Score=120.65  Aligned_cols=147  Identities=15%  Similarity=0.132  Sum_probs=105.9

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .++++++++.+..+|.+.+.+++++.+.|++           +..++.+++ +..|...          .....+++++|
T Consensus         9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d-----------~~~~~~Giv-~~~dl~~----------~~~~~~v~~~m   66 (282)
T 2yzq_A            9 QNPVTITLPATRNYALELFKKYKVRSFPVVN-----------KEGKLVGII-SVKRILV----------NPDEEQLAMLV   66 (282)
T ss_dssp             ESCCCEESSCC------------CCEEEEEC-----------TTCCEEEEE-ESSCC--------------------CCC
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCeEEEEc-----------CCCcEEEEE-EHHHHHh----------hhccCCHHHHc
Confidence            4677899999999999999999999999996           456777888 7777311          01235799999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh-hhcccCCCCCCCCCCCcccchhhhHHHHH
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEVDSTWKTFNEVQ  168 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (207)
                      .+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+ ......                       
T Consensus        67 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~-----------------------  121 (282)
T 2yzq_A           67 KR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSE-----------------------  121 (282)
T ss_dssp             BS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCS-----------------------
T ss_pred             CC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccC-----------------------
Confidence            99  8999999999999999999999999999998899999999999997 542100                       


Q ss_pred             HHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          169 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       169 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                          .....++.++|.++++++++++++.++++.|.+++
T Consensus       122 ----~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~  156 (282)
T 2yzq_A          122 ----KYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSN  156 (282)
T ss_dssp             ----GGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCS
T ss_pred             ----CcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcC
Confidence                01245788999989999999999999999998764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.59  E-value=2.5e-15  Score=114.67  Aligned_cols=101  Identities=18%  Similarity=0.194  Sum_probs=85.5

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (207)
                      +++++|+|++++.++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++++....+..                
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~----------------   79 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLS----------------   79 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCC----------------
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccc----------------
Confidence            6889999988999999999999999999999999999999889999999999998764221110                


Q ss_pred             HHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                             .......++.++|.++++++++++++.+++++|.+++
T Consensus        80 -------~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~  116 (156)
T 3k6e_A           80 -------QEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES  116 (156)
T ss_dssp             -------HHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS
T ss_pred             -------cccccccCHHHhhcCCceecccccHHHHHHHHHHHcC
Confidence                   0012467899999999999999999999999998764

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.59  E-value=1.9e-15  Score=116.36  Aligned_cols=126  Identities=71%  Similarity=1.124  Sum_probs=93.2

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      .++|+++|++..+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+||++.....+........++.....|
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            35799999985568999999999999999999999999999988999999999999864322221111222233344455


Q ss_pred             hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ..+.++..........++.++|+++++++++++++.+++++|.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~  128 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETK  128 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTST
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcC
Confidence            5555555555555678899999998999999999999999998764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.58  E-value=5.7e-15  Score=121.44  Aligned_cols=178  Identities=16%  Similarity=0.205  Sum_probs=122.0

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..+|.+.|.++++++++|++           +..++.|++ |..|... +.+...  ......+++++|.
T Consensus        69 ~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-----------~~~~~~Gii-t~~di~~-~~~~~~--~~~~~~~v~~~m~  133 (282)
T 2yzq_A           69 DVPVVKENDTLKKAAKLMLEYDYRRVVVVD-----------SKGKPVGIL-TVGDIIR-RYFAKS--EKYKGVEIEPYYQ  133 (282)
T ss_dssp             CCCEEETTSBHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHHH-HTTTTC--SGGGGCBSTTTSB
T ss_pred             CCcEECCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCEEEEEE-EHHHHHH-HHHhcc--CCcccCcHHHHhC
Confidence            367889999999999999999999999996           445677888 7777311 011111  1123457899998


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCC-CCCCCCCc---c-cchhhhHH
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR-ADNSMFPE---V-DSTWKTFN  165 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~-~~~~~~~~---~-~~~~~~~~  165 (207)
                      +  ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|++.......... ...+..+.   . ...+..+ 
T Consensus       134 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  210 (282)
T 2yzq_A          134 R--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLL-  210 (282)
T ss_dssp             S--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-------------------------
T ss_pred             C--CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHH-
Confidence            8  8999999999999999999999999999998899999999999983210000000 00000000   0 0000000 


Q ss_pred             HHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       166 ~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                       +..........++.++|+++++++++++++.+++++|.+++
T Consensus       211 -~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  251 (282)
T 2yzq_A          211 -FEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYS  251 (282)
T ss_dssp             ---------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHT
T ss_pred             -HhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcC
Confidence             00000112467899999999999999999999999998764

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.56  E-value=2.3e-14  Score=107.43  Aligned_cols=97  Identities=15%  Similarity=0.254  Sum_probs=84.9

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      +...+|+++|+++.++.++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++...                
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~----------------   83 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI----------------   83 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh----------------
Confidence            4567899999986679999999999999999999999999999977 89999999999997531                


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                    .....++.++| ++++++++++++.+++++|.+++
T Consensus        84 --------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~  117 (148)
T 3lv9_A           84 --------------NENKIELEEIL-RDIIYISENLTIDKALERIRKEK  117 (148)
T ss_dssp             --------------HHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHT
T ss_pred             --------------cCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcC
Confidence                          11256899999 88999999999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.55  E-value=1.8e-14  Score=105.76  Aligned_cols=95  Identities=21%  Similarity=0.317  Sum_probs=81.5

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      ...+|+++|++..++.++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++...                 
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----------------   65 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----------------   65 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----------------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----------------
Confidence            356899999964478999999999999999999999999999975 89999999999997531                 


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                    ....++.++|. +++++.+++++.+++++|.+++
T Consensus        66 --------------~~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~   98 (129)
T 3jtf_A           66 --------------EPALDIRSLVR-PAVFIPEVKRLNVLLREFRASR   98 (129)
T ss_dssp             --------------CTTSCGGGGCB-CCCEEETTCBHHHHHHHHHTSS
T ss_pred             --------------cCCcCHHHHhC-CCeEeCCCCcHHHHHHHHHhcC
Confidence                          13457889995 5889999999999999998764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.55  E-value=1.3e-14  Score=107.60  Aligned_cols=97  Identities=24%  Similarity=0.329  Sum_probs=82.0

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      +.+|+++|++..++.++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.....                
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~----------------   65 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA----------------   65 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS----------------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc----------------
Confidence            35799999964478999999999999999999999999999977 7999999999999854210                


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  .....++.++|++ ++++.+++++.+++++|.+++
T Consensus        66 ------------~~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~   99 (136)
T 3lfr_A           66 ------------DGDSDDVKKLLRP-ATFVPESKRLNVLLREFRANH   99 (136)
T ss_dssp             ------------SGGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHT
T ss_pred             ------------cCCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcC
Confidence                        1134678999965 899999999999999998764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.55  E-value=9.5e-15  Score=112.30  Aligned_cols=118  Identities=19%  Similarity=0.288  Sum_probs=95.3

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhh----------hh----
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLT----------AN----   74 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~----------~~----   74 (207)
                      +.+++++.++.+..+|.+.|.+++++++.|++           +++++.|++ |..|......-          ..    
T Consensus        25 ~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd-----------~~g~lvGii-t~~Dll~~~~~~~~~~~~~~~~~~~~~   92 (170)
T 4esy_A           25 TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVD-----------QNGHLVGII-TESDFLRGSIPFWIYEASEILSRAIPA   92 (170)
T ss_dssp             CSCCCCEETTSBHHHHHHHHHHTTCSEEEEEC-----------TTSCEEEEE-EGGGGGGGTCCTTHHHHHHHHTTTSCH
T ss_pred             CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEc-----------CCccEEEEE-EHHHHHHHHhhccccchhhhhhhccch
Confidence            35789999999999999999999999999997           566777888 77773111000          00    


Q ss_pred             ----ccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           75 ----SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        75 ----~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                          .........+++++|++  +++++.+++++.+++++|.+++++++||+| +|+++|+||.+||++++
T Consensus        93 ~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l  160 (170)
T 4esy_A           93 PEVEHLFETGRKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             HHHHHHHHHHTTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred             hhHHhhhccccccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence                00001234579999999  999999999999999999999999999998 69999999999999864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.54  E-value=1.5e-14  Score=108.04  Aligned_cols=113  Identities=83%  Similarity=1.200  Sum_probs=87.4

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      +.++|+++|++..+++++++++++.++++.|.+++++++||+|++|+++|+||.+|+++....              ...
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~--------------~~~   68 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSG--------------DST   68 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC------------------C
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcc--------------cCc
Confidence            346899999986569999999999999999999999999999988999999999999874311              111


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      |..+.++..........++.++|.++++++++++++.+++++|.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~  115 (152)
T 4gqw_A           69 WKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETK  115 (152)
T ss_dssp             CHHHHHHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSS
T ss_pred             ccchHHHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCC
Confidence            22222222222223467899999998999999999999999998764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.54  E-value=3.1e-14  Score=109.80  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=82.2

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      +...+|+++|++..+++++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++...                
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~----------------  102 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI----------------  102 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh----------------
Confidence            5567899999954389999999999999999999999999999977 89999999999997531                


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                    .....++.++| ++++++++++++.+++++|.+++
T Consensus       103 --------------~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~  136 (172)
T 3lhh_A          103 --------------AGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTG  136 (172)
T ss_dssp             --------------TTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHT
T ss_pred             --------------hcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcC
Confidence                          11356799999 89999999999999999998764

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.53  E-value=7.1e-14  Score=103.19  Aligned_cols=99  Identities=25%  Similarity=0.317  Sum_probs=84.3

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      +...+++++|++  ++.++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++.....+              
T Consensus         4 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------   67 (138)
T 2yzi_A            4 DMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPG--------------   67 (138)
T ss_dssp             CTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC--------------
T ss_pred             hhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcC--------------
Confidence            445689999998  9999999999999999999999999999998899999999999974211000              


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                   .....++.++|.++++++++++++.+++++|.+++
T Consensus        68 -------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~  102 (138)
T 2yzi_A           68 -------------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHR  102 (138)
T ss_dssp             -------------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHT
T ss_pred             -------------CcccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcC
Confidence                         01346799999999999999999999999998764

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.53  E-value=1.1e-14  Score=106.91  Aligned_cols=98  Identities=19%  Similarity=0.230  Sum_probs=80.9

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      +...+|+++|++..+++++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++....               
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~---------------   67 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS---------------   67 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT---------------
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc---------------
Confidence            4456899999974467899999999999999999999999999976 899999999999975311               


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                    .....++.++| ++++++++++++.+++++|.+++
T Consensus        68 --------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~  101 (130)
T 3i8n_A           68 --------------GSGQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHR  101 (130)
T ss_dssp             --------------TTTTSBHHHHS-EECCEEETTSCHHHHHHHHHHHT
T ss_pred             --------------CCCcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcC
Confidence                          11356789999 46889999999999999998764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.52  E-value=3e-14  Score=104.21  Aligned_cols=96  Identities=24%  Similarity=0.384  Sum_probs=81.3

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      +.+|+++|++..++.++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++....                 
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-----------------   64 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence            35799999973359999999999999999999999999999987 899999999999975411                 


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  .....++.++|. +++++++++++.+++++|.+++
T Consensus        65 ------------~~~~~~v~~~m~-~~~~v~~~~~l~~a~~~m~~~~   98 (127)
T 3nqr_A           65 ------------DAEAFSMDKVLR-TAVVVPESKRVDRMLKEFRSQR   98 (127)
T ss_dssp             ------------TCCCCCHHHHCB-CCCEEETTCBHHHHHHHHHHTT
T ss_pred             ------------cCCCCCHHHHcC-CCeEECCCCcHHHHHHHHHhcC
Confidence                        113567899995 4789999999999999998764

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.52  E-value=2.7e-14  Score=103.19  Aligned_cols=91  Identities=22%  Similarity=0.406  Sum_probs=81.8

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (207)
                      +|+++|++  ++.++++++++.++++.|.+++++++||+|++|+++|+|+.+|+++...                     
T Consensus         2 ~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~---------------------   58 (122)
T 3kpb_A            2 LVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA---------------------   58 (122)
T ss_dssp             BHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH---------------------
T ss_pred             chHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH---------------------
Confidence            68999999  9999999999999999999999999999998899999999999997531                     


Q ss_pred             HHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                ....++.++|.++++++++++++.+++++|.+++
T Consensus        59 ----------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~   92 (122)
T 3kpb_A           59 ----------QNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYN   92 (122)
T ss_dssp             ----------TTCCBGGGTSBSSCCCEETTSBHHHHHHHHHHHT
T ss_pred             ----------hcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhC
Confidence                      1234799999999999999999999999998754

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.51  E-value=3.5e-14  Score=113.42  Aligned_cols=108  Identities=15%  Similarity=0.114  Sum_probs=93.1

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .+++++.++.+..+|.+.|.++++++++|++           ++.++.+++ +..|...      .    ....+++++|
T Consensus        21 ~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd-----------~~~~l~Giv-t~~dl~~------~----~~~~~v~~im   78 (213)
T 1vr9_A           21 QDFPMVEESATVRECLHRMRQYQTNECIVKD-----------REGHFRGVV-NKEDLLD------L----DLDSSVFNKV   78 (213)
T ss_dssp             SCSCEEETTCBHHHHHHHHHHTTSSEEEEEC-----------TTSBEEEEE-EGGGGTT------S----CTTSBSGGGC
T ss_pred             CCCeEECCCCcHHHHHHHHHHCCCCEEEEEc-----------CCCEEEEEE-EHHHHHh------h----cCCCcHHHHc
Confidence            4567899999999999999999999999996           566788888 7777311      1    1134799999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++  ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++..
T Consensus        79 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~  128 (213)
T 1vr9_A           79 SL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEAL  128 (213)
T ss_dssp             BC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             cC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            99  899999999999999999999999999999889999999999999865

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.51  E-value=5.2e-14  Score=105.69  Aligned_cols=98  Identities=26%  Similarity=0.292  Sum_probs=84.9

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++|+++|++.++++++++++++.++++.|.+++++++||+|++|+++|+||.+|+++......                 
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-----------------   90 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV-----------------   90 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS-----------------
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC-----------------
Confidence            479999998667899999999999999999999999999998899999999999998642100                 


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                .....++.++|.++++++++++++.+++++|.+++
T Consensus        91 ----------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~  125 (149)
T 3k2v_A           91 ----------DMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRH  125 (149)
T ss_dssp             ----------CCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHT
T ss_pred             ----------CcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcC
Confidence                      01356799999999999999999999999998764

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.51  E-value=3.6e-14  Score=119.67  Aligned_cols=154  Identities=12%  Similarity=0.093  Sum_probs=117.6

Q ss_pred             ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-Cc----eeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558           13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DR----VSALRRSSAVFASGTLTANSAAPSSGVYTVGD   87 (207)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~----~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~   87 (207)
                      ++++++.+..+|.+.|.++++++++|++           +. ..    +.+++ +..|... .+............++++
T Consensus       120 ~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~~~~~~Giv-t~~dl~~-~~~~~~~~~~~~~~~v~~  186 (334)
T 2qrd_G          120 IYVHPMHSLMDACLAMSKSRARRIPLID-----------VDGETGSEMIVSVL-TQYRILK-FISMNCKETAMLRVPLNQ  186 (334)
T ss_dssp             CCBCTTSBHHHHHHHHHHSCCSEEEEEE-----------EETTTTEEEEEEEE-EHHHHHH-HHHHHCGGGGGCCCBGGG
T ss_pred             eeeCCCCcHHHHHHHHHHCCceEEEEEe-----------CCCCcCccceEEEe-eHHHHHH-HHHhhccchhhhhCcHHH
Confidence            7899999999999999999999999995           22 22    67787 7777211 111110000112346888


Q ss_pred             ---cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhH
Q 028558           88 ---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTF  164 (207)
Q Consensus        88 ---vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (207)
                         +|++  ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.......                  
T Consensus       187 l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~------------------  246 (334)
T 2qrd_G          187 MTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY------------------  246 (334)
T ss_dssp             SSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCG------------------
T ss_pred             hCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhcccc------------------
Confidence               5888  89999999999999999999999999999988999999999999986421100                  


Q ss_pred             HHHHHHHhhhcCCcccccccC------CCeEecCCCCHHHHHHHHhhcC
Q 028558          165 NEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       165 ~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                              .....++.++|.+      +++++++++++.+++++|.+++
T Consensus       247 --------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~  287 (334)
T 2qrd_G          247 --------SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSR  287 (334)
T ss_dssp             --------GGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSC
T ss_pred             --------ccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcC
Confidence                    0124568888874      7899999999999999998764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.51  E-value=2e-14  Score=105.85  Aligned_cols=97  Identities=11%  Similarity=0.024  Sum_probs=80.2

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC-CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      ++|+++|++..+++++++++++.+|++.|.+++++++||+++ +|+++|+||.+|++++......               
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~---------------   66 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---------------   66 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC---------------
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc---------------
Confidence            479999987547999999999999999999999999999975 5899999999999986421000               


Q ss_pred             hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  ....++.++| ++++++++++++.+++++|.+++
T Consensus        67 ------------~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~   99 (130)
T 3hf7_A           67 ------------FTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNK   99 (130)
T ss_dssp             ------------CCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHC
T ss_pred             ------------cchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcC
Confidence                        0123578888 67899999999999999998764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.50  E-value=7.2e-14  Score=104.70  Aligned_cols=104  Identities=21%  Similarity=0.219  Sum_probs=85.9

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      .++|+++|++..+++++++++++.+|++.|.+++++++||+|++|+++|+||.+||++........          .   
T Consensus        14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~----------~---   80 (150)
T 3lqn_A           14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERI----------E---   80 (150)
T ss_dssp             HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSB----------C---
T ss_pred             cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhccc----------c---
Confidence            458999999633699999999999999999999999999999889999999999999865221100          0   


Q ss_pred             hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                               .......++.++|.++++++++++++.+++++|.+++
T Consensus        81 ---------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~  117 (150)
T 3lqn_A           81 ---------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHP  117 (150)
T ss_dssp             ---------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCS
T ss_pred             ---------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCC
Confidence                     0012456899999999999999999999999998764

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.50  E-value=9.5e-14  Score=101.85  Aligned_cols=95  Identities=20%  Similarity=0.317  Sum_probs=82.9

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      ..+++++|++  ++.++++++++.++++.|.+++++++||+| +|+++|+||.+|+++......                
T Consensus         3 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~----------------   63 (133)
T 2ef7_A            3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGK----------------   63 (133)
T ss_dssp             CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC----------------
T ss_pred             cccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCC----------------
Confidence            4689999999  899999999999999999999999999999 899999999999987532100                


Q ss_pred             hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  ....++.++|.++++++++++++.++++.|.+++
T Consensus        64 ------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~   97 (133)
T 2ef7_A           64 ------------SLETKAEEFMTASLITIREDSPITGALALMRQFN   97 (133)
T ss_dssp             ------------CTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHT
T ss_pred             ------------CcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcC
Confidence                        1246799999989999999999999999998764

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.50  E-value=4.3e-14  Score=103.38  Aligned_cols=96  Identities=19%  Similarity=0.097  Sum_probs=83.3

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ..++++++|++  ++.++++++++.++++.|.+++++++||+|+ |+++|+||.+|+.+......               
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~---------------   64 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWP---------------   64 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSC---------------
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCC---------------
Confidence            35689999999  9999999999999999999999999999997 99999999999997531100               


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                   ....++.++|.++++++++++++.+++++|.+++
T Consensus        65 -------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~   98 (128)
T 3gby_A           65 -------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAK   98 (128)
T ss_dssp             -------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCS
T ss_pred             -------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCC
Confidence                         1225789999999999999999999999998764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.50  E-value=7.6e-14  Score=102.00  Aligned_cols=110  Identities=16%  Similarity=0.159  Sum_probs=91.9

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .+++++++.+..+|.+.|.+++.++++|++           ++ +++.|++ +..|...  .+.    ......+++++|
T Consensus        14 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~~vGiv-t~~dl~~--~~~----~~~~~~~v~~~m   75 (127)
T 3nqr_A           14 QMITLKRNQTLDECLDVIIESAHSRFPVIS-----------EDKDHIEGIL-MAKDLLP--FMR----SDAEAFSMDKVL   75 (127)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEES-----------SSTTCEEEEE-EGGGGGG--GGS----TTCCCCCHHHHC
T ss_pred             HeEEEcCCCCHHHHHHHHHhCCCCEEEEEc-----------CCCCcEEEEE-EHHHHHH--HHh----ccCCCCCHHHHc
Confidence            477999999999999999999999999996           44 6788888 7777311  111    122356799999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+   +.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus        76 ~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           76 RT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             BC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             CC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            65   67899999999999999999999999999889999999999999853

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.50  E-value=1.7e-14  Score=117.20  Aligned_cols=108  Identities=20%  Similarity=0.362  Sum_probs=91.4

Q ss_pred             CcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhhhccCCCCCccccccccc-ccCCceE
Q 028558           22 RTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYTVGDFMT-TKEELHV   97 (207)
Q Consensus        22 ~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~~~~~~~~~~~~v~~vm~-~~~~~~~   97 (207)
                      .++.+.|+++|++|+++|+ |..+.+.+  .+.++.+.++. +++| +...+.+....       +++++|+ +  ++.+
T Consensus       130 ~~~~~~~i~~~~~~liit~-~~~~~~~v~~~a~~~~~~~i~-t~~d~~~~~~~~~~~~-------~v~~im~~~--~~~~  198 (245)
T 3l2b_A          130 AEIQAELIELKVSLLIVTG-GHTPSKEIIELAKKNNITVIT-TPHDSFTASRLIVQSL-------PVDYVMTKD--NLVA  198 (245)
T ss_dssp             HHHHHHHHHTTCSEEEECT-TCCCCHHHHHHHHHHTCEEEE-CSSCHHHHHHHGGGGS-------BHHHHSBCT--TCCC
T ss_pred             HHHHHHHHHcCCCEEEECC-CCCCCHHHHHHHHHcCCeEEE-eCCChHHHHHHHhcCC-------ceeeEecCC--ccEE
Confidence            5677899999999999998 77777777  67788899999 9999 66666665544       6999999 6  8999


Q ss_pred             ECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        98 v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      +++++++.++++.|.+++++++||+|++|+++|+||.+|+++.
T Consensus       199 ~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~  241 (245)
T 3l2b_A          199 VSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST  241 (245)
T ss_dssp             EETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred             ECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence            9999999999999999999999999988999999999999874

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.49  E-value=1e-13  Score=102.21  Aligned_cols=98  Identities=28%  Similarity=0.361  Sum_probs=84.0

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhH-HhhhcccCCCCCCCCCCCccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl-~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      +...+++++|++  ++.++++++++.++++.|.+++++++||+|++|+++|+|+.+|+ .+.....              
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------   68 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDK--------------   68 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTC--------------
T ss_pred             cccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhc--------------
Confidence            345689999999  89999999999999999999999999999988999999999999 7653110              


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                    .....++.++|.++++++++++++.+++++|.+++
T Consensus        69 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~  103 (138)
T 2p9m_A           69 --------------YTLETTIGDVMTKDVITIHEDASILEAIKKMDISG  103 (138)
T ss_dssp             --------------CCSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-
T ss_pred             --------------ccCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcC
Confidence                          01356789999999999999999999999998764

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.49  E-value=1.3e-13  Score=105.24  Aligned_cols=103  Identities=18%  Similarity=0.168  Sum_probs=87.4

Q ss_pred             CCCccccccccccc-CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558           79 SSGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (207)
Q Consensus        79 ~~~~~~v~~vm~~~-~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~  157 (207)
                      ++..++|+++|++. +++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.+..              
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~--------------   85 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAG--------------   85 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH--------------
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHh--------------
Confidence            45678999999962 269999999999999999999999999999988999999999999875311              


Q ss_pred             cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  ........++.++|.++++++++++++.+++++|.+++
T Consensus        86 ------------~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~  123 (165)
T 3fhm_A           86 ------------QGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGR  123 (165)
T ss_dssp             ------------HGGGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHT
T ss_pred             ------------cCCccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcC
Confidence                        00012467899999999999999999999999998764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.49  E-value=1.3e-14  Score=110.58  Aligned_cols=114  Identities=14%  Similarity=0.141  Sum_probs=92.4

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc-CCCCCcccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFM   89 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~-~~~~~~~~v~~vm   89 (207)
                      .++++.++.+..+|.+.+.++|++++.|++           +..++.|++ |..|... .+..... .......+++++|
T Consensus        26 ~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd-----------~~~~lvGii-t~~Di~~-~~~~~~~~~~~~~~~~v~~im   92 (156)
T 3k6e_A           26 NLAVLIDTHNADHATLLLSQMTYTRVPVVT-----------DEKQFVGTI-GLRDIMA-YQMEHDLSQEIMADTDIVHMT   92 (156)
T ss_dssp             SSCCEETTSBHHHHHHHHTTSSSSEEEEEC-----------C-CBEEEEE-EHHHHHH-HHHHHTCCHHHHTTSBGGGTC
T ss_pred             HeEEECCcCCHHHHHHHHHHcCCcEEEEEc-----------CCCcEEEEE-Eecchhh-hhhhcccccccccccCHHHhh
Confidence            577999999999999999999999999997           566788888 8888311 1211111 0112356899999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++  ++.++++++++.++++.|.+++  .+||+|++|+++|+||.+|+++++
T Consensus        93 ~~--~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~  140 (156)
T 3k6e_A           93 KT--DVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAV  140 (156)
T ss_dssp             BC--SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             cC--CceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHH
Confidence            99  9999999999999999998775  499999999999999999999864

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.48  E-value=2e-13  Score=101.28  Aligned_cols=94  Identities=15%  Similarity=0.097  Sum_probs=82.0

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCC--cEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g--~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ++++++|++  ++.++++++++.++++.|.+++++++||+|++|  +++|+||.+|+++.....                
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~----------------   66 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR----------------   66 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT----------------
T ss_pred             eEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC----------------
Confidence            579999999  999999999999999999999999999999877  999999999998753110                


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  .....++.++|.+++++++++ ++.+++++|.+++
T Consensus        67 ------------~~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~  100 (141)
T 2rih_A           67 ------------LDLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHN  100 (141)
T ss_dssp             ------------CCTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHT
T ss_pred             ------------CCCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcC
Confidence                        013467999999999999999 9999999998764

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.48  E-value=7.7e-14  Score=117.56  Aligned_cols=156  Identities=14%  Similarity=0.117  Sum_probs=117.8

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc-CCceeeeecccchhhhhhhhhhccCC----CCCccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS-SDRVSALRRSSAVFASGTLTANSAAP----SSGVYT   84 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~-~~~~~~~~~s~~d~~~~~~~~~~~~~----~~~~~~   84 (207)
                      .++++++++.+..+|.+.|.++++++++|++           + ..++.|++ |..|..  +.+......    .....+
T Consensus       126 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~~Giv-t~~dl~--~~~~~~~~~~~~~~~~~~~  191 (330)
T 2v8q_E          126 KPLVCISPNASLFDAVSSLIRNKIHRLPVID-----------PESGNTLYIL-THKRIL--KFLKLFITEFPKPEFMSKS  191 (330)
T ss_dssp             CCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC-----------TTTCCEEEEE-CHHHHH--HHHHHHSCSSSCCGGGGSB
T ss_pred             CCceEeCCCCCHHHHHHHHHHCCCCeEEEEe-----------CCCCcEEEEE-cHHHHH--HHHHHHhhccCchhhhcCC
Confidence            4688999999999999999999999999996           4 56778888 877721  111111100    011234


Q ss_pred             cccc--cc-ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           85 VGDF--MT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        85 v~~v--m~-~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      ++++  |+ +  ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++........              
T Consensus       192 v~~~~v~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~--------------  255 (330)
T 2v8q_E          192 LEELQIGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYN--------------  255 (330)
T ss_dssp             HHHHTCSBCS--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCC--------------
T ss_pred             HHHhcccCcC--CceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccc--------------
Confidence            5555  55 5  789999999999999999999999999999889999999999999864221100              


Q ss_pred             hhHHHHHHHHhhhcCCcccccc------cCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLM------TPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im------~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  ....++.++|      .++++++++++++.+++++|.+++
T Consensus       256 ------------~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~  295 (330)
T 2v8q_E          256 ------------NLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAE  295 (330)
T ss_dssp             ------------CCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHT
T ss_pred             ------------cccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCC
Confidence                        0124566666      578999999999999999998764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.47  E-value=1.1e-13  Score=100.23  Aligned_cols=95  Identities=20%  Similarity=0.258  Sum_probs=81.6

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++++++|++  ++.++++++++.++++.|.+++++.+||+| +|+++|+|+.+|+++......                 
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~-----------------   60 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD-----------------   60 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC-----------------
T ss_pred             CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCC-----------------
Confidence            368899999  999999999999999999999999999999 899999999999987531100                 


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                .....++.++|.++++++++++++.+++++|.+++
T Consensus        61 ----------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~   95 (125)
T 1pbj_A           61 ----------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNV   95 (125)
T ss_dssp             ----------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHT
T ss_pred             ----------cccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcC
Confidence                      01356799999989999999999999999998764

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.47  E-value=9.4e-14  Score=105.30  Aligned_cols=97  Identities=20%  Similarity=0.281  Sum_probs=82.7

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      +...+|+++|+++.+++++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++....               
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~---------------   99 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN---------------   99 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC---------------
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc---------------
Confidence            3456899999985578999999999999999999999999999977 499999999999975310               


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                     ....++.++|+ +++++++++++.+++++|.+++
T Consensus       100 ---------------~~~~~v~~im~-~~~~v~~~~~l~~a~~~m~~~~  132 (156)
T 3oi8_A          100 ---------------PEQFHLKSILR-PAVFVPEGKSLTALLKEFREQR  132 (156)
T ss_dssp             ---------------GGGCCHHHHCB-CCCEEETTSBHHHHHHHHHHTT
T ss_pred             ---------------CCcccHHHHcC-CCEEECCCCCHHHHHHHHHhcC
Confidence                           02457889996 4889999999999999998764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.47  E-value=1.3e-13  Score=102.04  Aligned_cols=112  Identities=15%  Similarity=0.077  Sum_probs=93.1

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      .++++++++.+..+|.+.|.++++++++|++           ++ .++.|++ +..|...  .+..   ......+++++
T Consensus        13 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd-----------~~~~~~vGiv-t~~dl~~--~~~~---~~~~~~~v~~~   75 (136)
T 3lfr_A           13 SQMISIKATQTPREFLPAVIDAAHSRYPVIG-----------ESHDDVLGVL-LAKDLLP--LILK---ADGDSDDVKKL   75 (136)
T ss_dssp             GGCCCEETTCCHHHHHHHHHHHCCSEEEEES-----------SSTTCEEEEE-EGGGGGG--GGGS---SSGGGCCGGGT
T ss_pred             HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEc-----------CCCCcEEEEE-EHHHHHH--HHHh---ccCCCcCHHHH
Confidence            4578999999999999999999999999996           44 5788888 8777311  1110   12234579999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |++   +.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        76 m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (136)
T 3lfr_A           76 LRP---ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQI  125 (136)
T ss_dssp             CBC---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC
T ss_pred             cCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            965   78999999999999999999999999999889999999999999854

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.47  E-value=1.7e-13  Score=100.81  Aligned_cols=95  Identities=20%  Similarity=0.266  Sum_probs=81.5

Q ss_pred             ccccccc---ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           84 TVGDFMT---TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        84 ~v~~vm~---~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      +|+++|+   +  ++.++++++++.++++.|.+++++.+||+| +|+++|+||.+|+++.....+.              
T Consensus         7 ~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~--------------   69 (135)
T 2rc3_A            7 TVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK--------------   69 (135)
T ss_dssp             BHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS--------------
T ss_pred             eHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC--------------
Confidence            8999999   6  899999999999999999999999999999 8999999999999863211110              


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  .....++.++|.++++++++++++.+++++|.+++
T Consensus        70 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~  104 (135)
T 2rc3_A           70 ------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMR  104 (135)
T ss_dssp             ------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHT
T ss_pred             ------------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhC
Confidence                        01356799999999999999999999999998764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.47  E-value=2.2e-13  Score=102.71  Aligned_cols=106  Identities=21%  Similarity=0.232  Sum_probs=85.6

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      +...+|+++|++.+++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.......       +   . 
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~-------~---~-   76 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLER-------I---E-   76 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSS-------B---C-
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccc-------c---c-
Confidence            3456899999964468999999999999999999999999999988999999999999976421100       0   0 


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                 .......++.++|.++++++++++++.+++++|.+++
T Consensus        77 -----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~  113 (157)
T 2emq_A           77 -----------FERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHP  113 (157)
T ss_dssp             -----------GGGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSS
T ss_pred             -----------hHHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCC
Confidence                       0012456899999999999999999999999998764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.46  E-value=1.2e-13  Score=104.31  Aligned_cols=96  Identities=22%  Similarity=0.361  Sum_probs=82.9

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEE-cC-CCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVv-d~-~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      ...+|+++|+++.+++++++++++.+|++.|.+++++++||+ ++ +|+++|+||.+|+++...                
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~----------------   81 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR----------------   81 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH----------------
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh----------------
Confidence            345899999975579999999999999999999999999999 64 489999999999997531                


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                    .....++.++| ++++++++++++.+++++|.+++
T Consensus        82 --------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~  115 (153)
T 3oco_A           82 --------------IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHR  115 (153)
T ss_dssp             --------------HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTT
T ss_pred             --------------cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcC
Confidence                          11357899999 89999999999999999998764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.46  E-value=1.8e-13  Score=104.04  Aligned_cols=105  Identities=25%  Similarity=0.258  Sum_probs=84.1

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      .++|+++|++  +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+||++........              
T Consensus         4 ~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~--------------   67 (160)
T 2o16_A            4 MIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQR--------------   67 (160)
T ss_dssp             CCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------------
T ss_pred             cCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcc--------------
Confidence            4579999999  899999999999999999999999999999889999999999998754210000              


Q ss_pred             hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                           ...........++.++|.++++++++++++.+++++|.+++
T Consensus        68 -----~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  108 (160)
T 2o16_A           68 -----SAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHK  108 (160)
T ss_dssp             -------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTT
T ss_pred             -----cccccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhC
Confidence                 00000012456899999999999999999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.46  E-value=3e-13  Score=99.18  Aligned_cols=109  Identities=12%  Similarity=0.030  Sum_probs=90.7

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      .++++++++.+..+|.+.|.+++.++++|++           +. +++.|++ +..|....  +.      ....+++++
T Consensus        15 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~~~Giv-t~~dl~~~--~~------~~~~~v~~~   74 (129)
T 3jtf_A           15 SRMDLLDISQPLPQLLATIIETAHSRFPVYE-----------DDRDNIIGIL-LAKDLLRY--ML------EPALDIRSL   74 (129)
T ss_dssp             GGCCCEETTSCHHHHHHHHHHSCCSEEEEES-----------SSTTCEEEEE-EGGGGGGG--GT------CTTSCGGGG
T ss_pred             HHeEEECCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCCcEEEEE-EHHHHHhH--hc------cCCcCHHHH
Confidence            4567999999999999999999999999996           43 6788888 77773111  11      124579999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |.+   +.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus        75 m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l  124 (129)
T 3jtf_A           75 VRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQI  124 (129)
T ss_dssp             CBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHH
T ss_pred             hCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            965   78999999999999999999999999999889999999999999854

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.46  E-value=8.7e-14  Score=102.09  Aligned_cols=111  Identities=17%  Similarity=0.172  Sum_probs=92.2

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      ..+++++++.+..+|.+.|.+++.++++|++           ++ .++.|++ +..|...  .+..    .....+++++
T Consensus        16 ~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~~~Giv-t~~dl~~--~~~~----~~~~~~v~~~   77 (130)
T 3i8n_A           16 PVVFRVDATMTINEFLDKHKDTPFSRPLVYS-----------EQKDNIIGFV-HRLELFK--MQQS----GSGQKQLGAV   77 (130)
T ss_dssp             CCCCEEETTSBHHHHHHHTTTCSCSCCEEES-----------SSTTCEEEEC-CHHHHHH--HHHT----TTTTSBHHHH
T ss_pred             HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEe-----------CCCCcEEEEE-EHHHHHH--HHhc----CCCcCCHHHH
Confidence            4567899999999999999999999999996           44 6788888 8777311  1111    1234679999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |.   ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus        78 m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           78 MR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             SE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             hc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            94   478999999999999999999999999999889999999999999754

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.45  E-value=2.4e-13  Score=105.27  Aligned_cols=96  Identities=16%  Similarity=0.122  Sum_probs=80.9

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      +...+|+++|++..+++++++++++.++++.|.+++++++||+|++ |+++|+||.+||++...                
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~----------------   96 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI----------------   96 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh----------------
Confidence            3456899999875479999999999999999999999999999976 89999999999997531                


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                    .....++. + .++++++++++++.+++++|.+++
T Consensus        97 --------------~~~~~~v~-~-~~~~~~v~~~~~l~~al~~m~~~~  129 (173)
T 3ocm_A           97 --------------TEGRVRRN-R-LRDPIIVHESIGILRLMDTLKRSR  129 (173)
T ss_dssp             --------------HHSSCCGG-G-SBCCCEECGGGCHHHHHHHHHHST
T ss_pred             --------------cCCcchhH-h-cCCCeEECCCCcHHHHHHHHHHcC
Confidence                          11345677 4 478899999999999999998864

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.45  E-value=3.8e-13  Score=107.00  Aligned_cols=92  Identities=18%  Similarity=0.241  Sum_probs=83.0

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHc---CCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~---~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~  157 (207)
                      ...+|+++|++  +++++++++++.++++.|.++   +++++||+|++|+++|+||.+|++..                 
T Consensus        52 ~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-----------------  112 (205)
T 3kxr_A           52 SENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH-----------------  112 (205)
T ss_dssp             CTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS-----------------
T ss_pred             CcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC-----------------
Confidence            34589999999  999999999999999999987   89999999999999999999999863                 


Q ss_pred             cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                      ....++.++|+++++++++++++.+++++|.+++
T Consensus       113 ----------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  146 (205)
T 3kxr_A          113 ----------------EPHEPLISLLSEDSRALTANTTLLDAAEAIEHSR  146 (205)
T ss_dssp             ----------------CTTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSS
T ss_pred             ----------------CCcchHHHHhcCCCeEECCCCCHHHHHHHHHhcC
Confidence                            1346799999999999999999999999998864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.45  E-value=3e-13  Score=102.65  Aligned_cols=97  Identities=24%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ..++|+++|++  . +++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++......               
T Consensus        15 ~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~---------------   76 (159)
T 3fv6_A           15 KKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ---------------   76 (159)
T ss_dssp             TTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS---------------
T ss_pred             hhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC---------------
Confidence            45689999997  5 49999999999999999999999999998899999999999998541100               


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  .....++.++|.+  +++++++++++.+++++|.+++
T Consensus        77 ------------~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~  113 (159)
T 3fv6_A           77 ------------ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQ  113 (159)
T ss_dssp             ------------CTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHT
T ss_pred             ------------cccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcC
Confidence                        1245689999998  8899999999999999998764

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.45  E-value=2.2e-13  Score=101.97  Aligned_cols=109  Identities=13%  Similarity=0.110  Sum_probs=92.3

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      ++++++++.+..+|.+.|.++++++++|++           +. .++.|++ +..|...  .+....     ..+++++|
T Consensus        34 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~lvGiv-t~~dl~~--~~~~~~-----~~~v~~~m   94 (148)
T 3lv9_A           34 DMVCIYESDSEEKILAILKEEGVTRYPVCR-----------KNKDDILGFV-HIRDLYN--QKINEN-----KIELEEIL   94 (148)
T ss_dssp             TCCCEETTCCHHHHHHHHHHSCCSEEEEES-----------SSTTSEEEEE-EHHHHHH--HHHHHS-----CCCGGGTC
T ss_pred             HeEEECCCCCHHHHHHHHHHCCCCEEEEEc-----------CCCCcEEEEE-EHHHHHH--HHhcCC-----CccHHHhc
Confidence            577999999999999999999999999996           44 6788888 7777311  111110     35799999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                       +  ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus        95 -~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l  143 (148)
T 3lv9_A           95 -R--DIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEI  143 (148)
T ss_dssp             -B--CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHH
T ss_pred             -C--CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence             6  799999999999999999999999999999889999999999999854

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.45  E-value=1.1e-13  Score=116.11  Aligned_cols=166  Identities=17%  Similarity=0.150  Sum_probs=120.7

Q ss_pred             ccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhh--hhhhhc----cCC
Q 028558            5 VLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASG--TLTANS----AAP   78 (207)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~--~~~~~~----~~~   78 (207)
                      +++++..+++++++.+..+|.+.|.+++++++.|.+          .+..++.+++ |..|....  ......    .-.
T Consensus        35 ~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d----------~~~~~lvGil-t~~Dl~~~l~~~~~~~~~~~~l~  103 (323)
T 3t4n_C           35 VLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWD----------SKTSRFAGLL-TTTDFINVIQYYFSNPDKFELVD  103 (323)
T ss_dssp             HSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEE----------TTTTEEEEEE-CHHHHHHHHHHHHHCGGGGGGGG
T ss_pred             hCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEe----------CCCCeEEEEE-EHHHHHHHHHHHHcCcchhHHHH
Confidence            568889999999999999999999999999999985          1234677888 77772111  000000    000


Q ss_pred             CCCc------ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCc-----EEEEEehhhHHhhhcccCCC
Q 028558           79 SSGV------YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK-----LVGLVSDYDLLALDSISGSG  147 (207)
Q Consensus        79 ~~~~------~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~-----lvGiVt~~dl~~~~~~~~~~  147 (207)
                      ....      .++.++|++  +++++++++++.++++.|.+++++++||+|+++.     ++|+||.+|+++....... 
T Consensus       104 ~~~~~~v~~i~~~~~~~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~-  180 (323)
T 3t4n_C          104 KLQLDGLKDIERALGVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCR-  180 (323)
T ss_dssp             GCBHHHHHHHHHHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCG-
T ss_pred             HHHHHHHHHHHHHhCCCCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCC-
Confidence            0001      123445677  8999999999999999999999999999997775     9999999999975421000 


Q ss_pred             CCCCCCCCcccchhhhHHHHHHHHhhhcCCccccc---ccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          148 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDL---MTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                            . ......++.++   |.++++++++++++.+++++|.+++
T Consensus       181 ----------------------~-~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~  220 (323)
T 3t4n_C          181 ----------------------E-THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGR  220 (323)
T ss_dssp             ----------------------G-GGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHT
T ss_pred             ----------------------c-hhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcC
Confidence                                  0 11245678898   8889999999999999999998764

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.45  E-value=1.3e-13  Score=101.21  Aligned_cols=97  Identities=20%  Similarity=0.271  Sum_probs=82.3

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh-hhcccCCCCCCCCCCCcccch
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~-~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ..+++++|++  ++.++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++ ......               
T Consensus         7 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~---------------   69 (133)
T 1y5h_A            7 MTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL---------------   69 (133)
T ss_dssp             -CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC---------------
T ss_pred             hcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCC---------------
Confidence            3579999999  8999999999999999999999999999988899999999999984 321100               


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  .....++.++|.++++++++++++.+++++|.+++
T Consensus        70 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~  104 (133)
T 1y5h_A           70 ------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQ  104 (133)
T ss_dssp             ------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHT
T ss_pred             ------------CccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcC
Confidence                        01346799999999999999999999999998764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.44  E-value=2.9e-13  Score=104.25  Aligned_cols=110  Identities=17%  Similarity=0.102  Sum_probs=93.5

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      .++++++++.+..+|.+.|.++++++++|++           ++ +++.|++ +..|...  .+..     ....+++++
T Consensus        52 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd-----------~~~~~lvGiv-t~~dl~~--~~~~-----~~~~~v~~i  112 (172)
T 3lhh_A           52 SDIVFLDLNLPLDANLRTVMQSPHSRFPVCR-----------NNVDDMVGII-SAKQLLS--ESIA-----GERLELVDL  112 (172)
T ss_dssp             GGCCCEETTSCHHHHHHHHHTCCCSEEEEES-----------SSTTSEEEEE-EHHHHHH--HHHT-----TCCCCGGGG
T ss_pred             HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEe-----------CCCCeEEEEE-EHHHHHH--HHhh-----cCcccHHHH
Confidence            4678999999999999999999999999996           44 6788888 7777311  1111     124579999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      | +  ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus       113 m-~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l  162 (172)
T 3lhh_A          113 V-K--NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDAL  162 (172)
T ss_dssp             C-B--CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             h-c--CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHH
Confidence            9 7  899999999999999999999999999999889999999999999864

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.44  E-value=1e-13  Score=101.30  Aligned_cols=111  Identities=13%  Similarity=0.130  Sum_probs=92.2

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++.++.++.+..+|.+.|.+++.++++|++           + .++.|++ +..|...  .+..   ......+++++|.
T Consensus        14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~-~~~~Giv-t~~dl~~--~~~~---~~~~~~~v~~~m~   75 (128)
T 3gby_A           14 DYPVFTLGGSTADAARRLAASGCACAPVLD-----------G-ERYLGMV-HLSRLLE--GRKG---WPTVKEKLGEELL   75 (128)
T ss_dssp             CSCCEETTSBHHHHHHHHHHHTCSEEEEEE-----------T-TEEEEEE-EHHHHHT--TCSS---SCCTTCBCCGGGC
T ss_pred             CcceECCCCCHHHHHHHHHHCCCcEEEEEE-----------C-CEEEEEE-EHHHHHH--HHhh---CCcccCcHHHHcc
Confidence            466889999999999999999999999996           4 6777888 7666311  1111   1122357999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +  ++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus        76 ~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (128)
T 3gby_A           76 E--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL  124 (128)
T ss_dssp             B--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             C--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence            9  899999999999999999999999999999899999999999999854

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.43  E-value=3e-13  Score=102.43  Aligned_cols=106  Identities=18%  Similarity=0.189  Sum_probs=86.5

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      +...+|+++|++.+++.++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++.......       +   . 
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~-------~---~-   79 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER-------I---E-   79 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS-------B---C-
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcc-------c---c-
Confidence            3456899999875568999999999999999999999999999988999999999999976422110       0   0 


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                 .......++.++|.++++++++++++.+++++|.+++
T Consensus        80 -----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~  116 (159)
T 1yav_A           80 -----------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG  116 (159)
T ss_dssp             -----------GGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS
T ss_pred             -----------hhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCC
Confidence                       0012456899999999999999999999999998764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.43  E-value=6.9e-13  Score=103.05  Aligned_cols=97  Identities=23%  Similarity=0.222  Sum_probs=83.6

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++|+++|++  +++++++++++.+|+++|.+++++++||+|++|+++|+||.+|+++.......                
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~----------------   70 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK----------------   70 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC----------------
T ss_pred             cCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc----------------
Confidence            579999998  99999999999999999999999999999988999999999999875421000                


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                .....++.++|.++++++++++++.+++++|.+++
T Consensus        71 ----------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  105 (184)
T 1pvm_A           71 ----------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENG  105 (184)
T ss_dssp             ----------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHT
T ss_pred             ----------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcC
Confidence                      01346799999989999999999999999998764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.42  E-value=2.5e-13  Score=99.90  Aligned_cols=114  Identities=15%  Similarity=0.026  Sum_probs=92.7

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      ..+++++++.+..+|.+.+.+++.++++|++          .+.+++.|++ +..|...  .+..  .......+++++|
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~----------~~~~~lvGiv-t~~dl~~--~~~~--~~~~~~~~v~~~m   76 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYR----------DSLDDAISML-RVREAYR--LMTE--KKEFTKEIMLRAA   76 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEES----------SSGGGEEEEE-EHHHHHH--HHTS--SSCCCHHHHHHHS
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEc----------CCCCcEEEEE-EHHHHHH--HHhc--cCccchhhHHHhc
Confidence            3577999999999999999999999999995          1246788888 7777311  1111  1123345789999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                       +  ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus        77 -~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (130)
T 3hf7_A           77 -D--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI  125 (130)
T ss_dssp             -B--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             -c--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHH
Confidence             4  589999999999999999999999999999889999999999999854

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.42  E-value=2.6e-13  Score=97.92  Aligned_cols=109  Identities=18%  Similarity=0.221  Sum_probs=92.9

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +++++.++.+..+|.+.+.+++.++++|++           +..++.|++ +..|..  +.+..      ...+++++|.
T Consensus        10 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~G~v-t~~dl~--~~~~~------~~~~v~~~~~   69 (122)
T 3kpb_A           10 PPITAHSNISIMEAAKILIKHNINHLPIVD-----------EHGKLVGII-TSWDIA--KALAQ------NKKTIEEIMT   69 (122)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSCEEEEC-----------TTSBEEEEE-CHHHHH--HHHHT------TCCBGGGTSB
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCeEEEEC-----------CCCCEEEEE-EHHHHH--HHHHh------cccCHHHHhc
Confidence            567899999999999999999999999996           567788888 777731  11111      1227999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +  ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus        70 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           70 R--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             S--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             C--CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHh
Confidence            9  899999999999999999999999999999889999999999999864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.41  E-value=5.7e-13  Score=112.20  Aligned_cols=165  Identities=16%  Similarity=0.082  Sum_probs=118.5

Q ss_pred             ccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-Cceeeeecccchhhhhhhhhh--ccC---CCC
Q 028558            7 PHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTAN--SAA---PSS   80 (207)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~--~~~---~~~   80 (207)
                      +++.++++++++.+..+|.+.+.+++++++.|++           .. +++.|++ +..|... .+...  ...   ...
T Consensus        42 ~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d-----------~~~~~~vGiv-t~~Dll~-~l~~~~~~~~~~~~~l  108 (330)
T 2v8q_E           42 PTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWD-----------SKKQSFVGML-TITDFIN-ILHRYYKSALVQIYEL  108 (330)
T ss_dssp             CSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEE-----------TTTTEEEEEE-EHHHHHH-HHHHHHHHHTTTCCCG
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEe-----------CCCCeEEEEE-EHHHHHH-HHHHHHhccccchhHH
Confidence            4566788999999999999999999999999996           33 5677888 7777211 11110  000   011


Q ss_pred             Ccc-------cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC-CCcEEEEEehhhHHhhhcccCCCCCCCC
Q 028558           81 GVY-------TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNS  152 (207)
Q Consensus        81 ~~~-------~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~dl~~~~~~~~~~~~~~~  152 (207)
                      ...       +++++|++  ++.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.........    
T Consensus       109 ~~~~~~~~~~~~~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~----  182 (330)
T 2v8q_E          109 EEHKIETWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEF----  182 (330)
T ss_dssp             GGCBHHHHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSS----
T ss_pred             hhccHHHHHHHHhhcccC--CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhcc----
Confidence            111       23567888  8999999999999999999999999999997 799999999999997642110000    


Q ss_pred             CCCcccchhhhHHHHHHHHhhhcCCccccc--cc-CCCeEecCCCCHHHHHHHHhhcC
Q 028558          153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDL--MT-PAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--m~-~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                        + ..              .....++.++  |+ ++++++++++++.+++++|.+++
T Consensus       183 --~-~~--------------~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~  223 (330)
T 2v8q_E          183 --P-KP--------------EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHR  223 (330)
T ss_dssp             --S-CC--------------GGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHC
T ss_pred             --C-ch--------------hhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcC
Confidence              0 00              0012344444  54 68899999999999999998764

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.39  E-value=5.7e-13  Score=99.36  Aligned_cols=117  Identities=19%  Similarity=0.230  Sum_probs=92.5

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhh-------hh--hccCCCCC
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTL-------TA--NSAAPSSG   81 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~-------~~--~~~~~~~~   81 (207)
                      +++++.++.+..+|.+.+.++++++++|++           ++.++.|++ +..|....-.       ..  ........
T Consensus        16 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~G~v-t~~dl~~~~~~~~~~~~~~~~~~~~~~~~   83 (152)
T 4gqw_A           16 DLHVVKPTTTVDEALELLVENRITGFPVID-----------EDWKLVGLV-SDYDLLALDSGDSTWKTFNAVQKLLSKTN   83 (152)
T ss_dssp             TCCCBCTTSBHHHHHHHHHHTTCSEEEEEC-----------TTCBEEEEE-EHHHHTTCC----CCHHHHHHHTC-----
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCceEEEEe-----------CCCeEEEEE-EHHHHHHhhcccCcccchHHHHHHHHHhc
Confidence            577999999999999999999999999997           455677777 7666211000       00  00011233


Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ..+++++|.+  ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        84 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~  141 (152)
T 4gqw_A           84 GKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAA  141 (152)
T ss_dssp             CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             cccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence            4689999999  899999999999999999999999999999889999999999999864

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.39  E-value=6.1e-13  Score=98.65  Aligned_cols=111  Identities=17%  Similarity=0.098  Sum_probs=92.5

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCC--ceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSD--RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~--~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      ++++++++.+..+|.+.+.++++++++|++           ++.  ++.|++ +..|...  .+...   .....+++++
T Consensus        14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~~~Giv-t~~dl~~--~~~~~---~~~~~~v~~~   76 (141)
T 2rih_A           14 PPVSLPETATIREVATELAKNRVGLAVLTA-----------RDNPKRPVAVV-SERDILR--AVAQR---LDLDGPAMPI   76 (141)
T ss_dssp             CCEEEETTCBHHHHHHHHHHHTCSEEEEEE-----------TTEEEEEEEEE-EHHHHHH--HHHTT---CCTTSBSGGG
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCcceeEEEE-EHHHHHH--HHhcC---CCCCCCHHHH
Confidence            577899999999999999999999999996           444  677888 7777311  12221   1224689999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |.+  ++.+++++ ++.++++.|.+++.+++||+|++|+++|+||.+|+++..
T Consensus        77 m~~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           77 ANS--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             CBC--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             cCC--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence            999  89999999 999999999999999999999889999999999998753

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.39  E-value=4.3e-13  Score=100.43  Aligned_cols=115  Identities=14%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhh-hccC-CCCCcccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTA-NSAA-PSSGVYTVGD   87 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~-~~~~-~~~~~~~v~~   87 (207)
                      .+++++.++.+..+|.+.+.++++++++|++           ++.++.|++ |..|... .+.. .... ......++++
T Consensus        25 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd-----------~~~~~~Giv-t~~dl~~-~~~~~~~~~~~~~~~~~v~~   91 (150)
T 3lqn_A           25 EKVAHVQIGNGLEHALLVLVKSGYSAIPVLD-----------PMYKLHGLI-STAMILD-GILGLERIEFERLEEMKVEQ   91 (150)
T ss_dssp             GGSCCBCTTSBHHHHHHHHHHHTCSEEEEEC-----------TTCBEEEEE-EHHHHHH-HTBCSSSBCGGGGGGCBGGG
T ss_pred             CceEEECCCCcHHHHHHHHHHcCCcEEEEEC-----------CCCCEEEEE-EHHHHHH-HHHhhcccchhHHhcCCHHH
Confidence            4578999999999999999999999999996           567778888 7777311 1110 0000 1123568999


Q ss_pred             cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        88 vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +|.+  ++.++++++++.++++.|.++++  +||+|++|+++|+||.+|+++.+
T Consensus        92 ~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l  141 (150)
T 3lqn_A           92 VMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLL  141 (150)
T ss_dssp             TCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHH
Confidence            9998  89999999999999999999887  99999889999999999999864

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.39  E-value=5.1e-13  Score=100.72  Aligned_cols=111  Identities=13%  Similarity=0.106  Sum_probs=92.5

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEee-CCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLS-RPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt-~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      .++++++++.+..+|.+.|.++++++++|+ +          .+.+++.|++ +..|...  .+...     ...+++++
T Consensus        30 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d----------~~~~~lvGiv-t~~dl~~--~~~~~-----~~~~v~~~   91 (153)
T 3oco_A           30 TSMSVVDVDETIADALLLYLEEQYSRFPVTAD----------NDKDKIIGYA-YNYDIVR--QARID-----DKAKISTI   91 (153)
T ss_dssp             GGCCCEETTSBHHHHHHHHHHHCCSEEEEEET----------TEEEEEEEEE-EHHHHHH--HHHHH-----TTSBGGGT
T ss_pred             hheEEEcCCCCHHHHHHHHHhCCCCEEEEEEC----------CCCCcEEEEE-EHHHHHh--HHhcC-----CCCcHHHH
Confidence            367899999999999999999999999998 5          0236778888 7777311  11111     14579999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      | +  ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus        92 m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l  141 (153)
T 3oco_A           92 M-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEEL  141 (153)
T ss_dssp             C-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHH
T ss_pred             h-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHH
Confidence            9 7  799999999999999999999999999999889999999999999865

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.38  E-value=6.9e-13  Score=100.47  Aligned_cols=106  Identities=14%  Similarity=0.092  Sum_probs=89.1

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      ++++++++.+..+|.+.|.++++++++|++           ++ .++.|++ +..|...  .+..     ....+++++|
T Consensus        49 ~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd-----------~~~~~lvGiv-t~~dl~~--~~~~-----~~~~~v~~im  109 (156)
T 3oi8_A           49 RMNVLKENDSIERITAYVIDTAHSRFPVIG-----------EDKDEVLGIL-HAKDLLK--YMFN-----PEQFHLKSIL  109 (156)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEES-----------SSTTCEEEEE-EGGGGGG--GSSC-----GGGCCHHHHC
T ss_pred             HeEEECCCCCHHHHHHHHHHCCCCEEEEEc-----------CCCCcEEEEE-EHHHHHH--HHHc-----CCcccHHHHc
Confidence            578999999999999999999999999996           44 3788888 7777311  1111     1345799999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHH
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~  138 (207)
                      .+   +.++++++++.++++.|.+++.+++||+|++|+++|+||.+|++
T Consensus       110 ~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          110 RP---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             BC---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             CC---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            65   78999999999999999999999999999889999999999986

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.38  E-value=6.3e-13  Score=100.34  Aligned_cols=113  Identities=22%  Similarity=0.327  Sum_probs=94.2

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .+++++.++.+..+|.+.+.++++++++|.            ++.++.|++ +..|... .+...  .......+++++|
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~------------~~~~~~Giv-t~~dl~~-~~~~~--~~~~~~~~v~~~m   84 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVV------------DGDDIAGIV-TERDYAR-KVVLQ--ERSSKATRVEEIM   84 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEE------------SSSSEEEEE-EHHHHHH-HSGGG--TCCSSSCBHHHHS
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEe------------eCCEEEEEE-EHHHHHH-HHHhc--cCCccccCHHHHc
Confidence            567899999999999999999999999996            456777888 7777311 12111  1123456899999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+  ++.++.+++++.++++.|.+++++++||+| +|+++|+||.+|+++.+
T Consensus        85 ~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l  133 (157)
T 4fry_A           85 TA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSV  133 (157)
T ss_dssp             BS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             CC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            99  899999999999999999999999999999 79999999999999865

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.38  E-value=3.2e-13  Score=103.80  Aligned_cols=117  Identities=17%  Similarity=0.227  Sum_probs=93.2

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhh----------------
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTAN----------------   74 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~----------------   74 (207)
                      +++++.++.+..+|.+.|.++++++++|++           ++.++.|++ +..|......+..                
T Consensus        15 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-----------~~~~~~Giv-t~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A           15 NLHVVKPSTSVDDALELLVEKKVTGLPVID-----------DNWTLVGVV-SDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             GCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-----------TTCBEEEEE-EHHHHTCC-------------------CC
T ss_pred             CceeeCCCCcHHHHHHHHHHcCCCeEEEEC-----------CCCeEEEEE-EHHHHHhhhhhccccCCcccccccccchh
Confidence            577999999999999999999999999997           456677777 6666211100000                


Q ss_pred             -------ccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           75 -------SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        75 -------~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                             .........+++++|++  ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAA  154 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence                   00001235679999999  899999999999999999999999999999889999999999999864

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.38  E-value=1.8e-12  Score=103.35  Aligned_cols=90  Identities=23%  Similarity=0.248  Sum_probs=82.0

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      .+++++|.+  +++++.+++++.++++.|.+++++++||+|++|+++|+||.+|+.+..                     
T Consensus        13 ~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~---------------------   69 (213)
T 1vr9_A           13 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD---------------------   69 (213)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC---------------------
T ss_pred             cCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc---------------------
Confidence            368999999  999999999999999999999999999999889999999999998742                     


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  ...++.++|+++++++++++++.+++++|.+++
T Consensus        70 ------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  102 (213)
T 1vr9_A           70 ------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQ  102 (213)
T ss_dssp             ------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCC
T ss_pred             ------------CCCcHHHHccCCCEEECCCCcHHHHHHHHHHhC
Confidence                        245799999999999999999999999998864

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.38  E-value=6.2e-13  Score=97.79  Aligned_cols=113  Identities=19%  Similarity=0.254  Sum_probs=92.4

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .+++++.++.+..+|.+.+.+++.++++|++            ++++.|++ +..|.. .+....+  ......+++++|
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd------------~~~~~Giv-t~~dl~-~~~~~~~--~~~~~~~v~~~m   80 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK------------DEKLVGIL-TERDFS-RKSYLLD--KPVKDTQVKEIM   80 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE------------TTEEEEEE-EHHHHH-HHGGGSS--SCGGGSBGGGTS
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE------------CCEEEEEE-ehHHHH-HHHHHcC--CCcccCCHHHhc
Confidence            4677899999999999999999999999994            34566777 766631 1122211  123456899999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+  ++.++++++++.++++.|.+++.+++||+| +|+++|+||.+|+++.+
T Consensus        81 ~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           81 TR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             BC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             cC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHH
Confidence            99  899999999999999999999999999999 79999999999999754

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.38  E-value=1.3e-12  Score=98.79  Aligned_cols=114  Identities=23%  Similarity=0.298  Sum_probs=85.1

Q ss_pred             CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCE-eEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCc
Q 028558           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG-FPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (207)
Q Consensus        78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~-lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~  156 (207)
                      ......+|+++|++  ++.++++++++.+|++.|.+++++. +||+|++ +++|+||.+||++......     ...+..
T Consensus        11 ~~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~-----~~~~~~   82 (157)
T 1o50_A           11 HHMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHF-----FGFIPK   82 (157)
T ss_dssp             TTCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHH-----HCCCC-
T ss_pred             hhhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhH-----Hhhhcc
Confidence            34566789999999  9999999999999999999999999 9999977 9999999999997532100     000000


Q ss_pred             ccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                          +   ..+..........++.++|.+ ++++++++++.+++++|.+++
T Consensus        83 ----~---~~~~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~  125 (157)
T 1o50_A           83 ----E---ELIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNN  125 (157)
T ss_dssp             -------------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHT
T ss_pred             ----H---HHHHHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCC
Confidence                0   000000001245678999998 999999999999999998764

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.38  E-value=5.9e-13  Score=97.56  Aligned_cols=113  Identities=17%  Similarity=0.263  Sum_probs=93.4

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..+|.+.+.+++.++++|++           ++.++.|++ +..|... +.+...  ......+++++|.
T Consensus        17 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~-~~~~~~--~~~~~~~v~~~m~   81 (133)
T 1y5h_A           17 GVTCVGEHETLTAAAQYMREHDIGALPICG-----------DDDRLHGML-TDRDIVI-KGLAAG--LDPNTATAGELAR   81 (133)
T ss_dssp             TCCCEETTSBHHHHHHHHHHHTCSEEEEEC-----------GGGBEEEEE-EHHHHHH-TTGGGT--CCTTTSBHHHHHT
T ss_pred             CceEeCCCCCHHHHHHHHHHhCCCeEEEEC-----------CCCeEEEEE-eHHHHHH-HHHhcC--CCccccCHHHHhc
Confidence            567899999999999999999999999996           566778888 7766311 122221  1234568999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +  ++.++++++++.++++.|.+++.+++||+|+ |+++|+||.+|+++.+
T Consensus        82 ~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           82 D--SIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             T--CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             C--CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            9  8999999999999999999999999999997 9999999999999753

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.38  E-value=5.3e-13  Score=101.85  Aligned_cols=114  Identities=17%  Similarity=0.205  Sum_probs=94.7

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      -+++++.++.+..+|.+.+.++++++++|++           ++.++.|++ +..|... .+....  ......+++++|
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~-~~~~~~--~~~~~~~v~~~m   99 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTD-----------ADGVVLGIF-TERDLVK-AVAGQG--AASLQQSVSVAM   99 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHHH-HHHHHG--GGGGTSBGGGTS
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCeEEEEE-EHHHHHH-HHHhcC--CccccCCHHHHh
Confidence            3577999999999999999999999999996           567788888 7777311 111111  012345799999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+  ++.++.+++++.++++.|.+++++++||+|+ |+++|+||.+|+++.+
T Consensus       100 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~  148 (165)
T 3fhm_A          100 TK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKAR  148 (165)
T ss_dssp             BS--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHT
T ss_pred             cC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            99  8999999999999999999999999999997 9999999999999864

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.38  E-value=6e-13  Score=99.81  Aligned_cols=110  Identities=18%  Similarity=0.188  Sum_probs=92.6

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +++++.++.+..+|.+.+.++++++++|++           +..++.|++ +..|..  +.+..  .......+++++|+
T Consensus        39 ~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~--~~~~~--~~~~~~~~v~~~m~  102 (149)
T 3k2v_A           39 EIPHVGLQATLRDALLEITRKNLGMTAICD-----------DDMNIIGIF-TDGDLR--RVFDT--GVDMRDASIADVMT  102 (149)
T ss_dssp             GSCEECTTCBHHHHHHHHHHHTSSEEEEEC-----------TTCBEEEEE-EHHHHH--HHHCS--SSCCTTCBHHHHSE
T ss_pred             CCeEECCCCcHHHHHHHHHhCCCcEEEEEC-----------CCCcEEEEe-cHHHHH--HHHhc--CCCcccCcHHHHcC
Confidence            567999999999999999999999999997           566788888 777731  22222  11234568999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~  139 (207)
                      +  ++.++.+++++.++++.|.+++++++||+|++ +++|+||.+|+++
T Consensus       103 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          103 R--GGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             E--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             C--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            9  89999999999999999999999999999965 9999999999975

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.37  E-value=1.2e-12  Score=101.16  Aligned_cols=120  Identities=20%  Similarity=0.250  Sum_probs=84.5

Q ss_pred             CCcccccccccccCC--ceEE--CCCCCHHHHHHHHHHcCCCEeEEE--cCCCcEEEEEehhhHHhhhcccCCCC-----
Q 028558           80 SGVYTVGDFMTTKEE--LHVV--KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGR-----  148 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~--~~~v--~~~~~v~ea~~~m~~~~~~~lpVv--d~~g~lvGiVt~~dl~~~~~~~~~~~-----  148 (207)
                      ....+|+++|++..+  ++++  .+++++.+|++.|.+++++.+||+  |++|+++|+||.+|+++.........     
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~   87 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS   87 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence            345689999999211  7888  999999999999999999999999  77899999999999987642110000     


Q ss_pred             CCCCCCCcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      .....+......+        ........++.++|.++++++++++++.+++++|.+++
T Consensus        88 ~~~~~~~~~~~~~--------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  138 (185)
T 2j9l_A           88 TSIIYFTEHSPPL--------PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLG  138 (185)
T ss_dssp             TCEEECSSSCCCC--------CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHT
T ss_pred             cceeecccCCccc--------ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCC
Confidence            0000000000000        00002346789999989999999999999999998764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.37  E-value=1.1e-12  Score=104.28  Aligned_cols=108  Identities=18%  Similarity=0.121  Sum_probs=92.8

Q ss_pred             cccccccCCCCCCccccccccc---CCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFAL---QLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVG   86 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~---~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~   86 (207)
                      ..+++++++.+..+|.+.+.++   ++..+.|++           +..++.|++ +..|...      .    ....+++
T Consensus        62 ~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd-----------~~~~lvGiv-t~~dll~------~----~~~~~v~  119 (205)
T 3kxr_A           62 HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVD-----------EADKYLGTV-RRYDIFK------H----EPHEPLI  119 (205)
T ss_dssp             CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEEC-----------TTCBEEEEE-EHHHHTT------S----CTTSBGG
T ss_pred             CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEc-----------CCCeEEEEE-EHHHHHh------C----CCcchHH
Confidence            3678999999999999999887   899999997           667788888 6666311      1    2245799


Q ss_pred             ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++|++  +++++++++++.++++.|.+++++.+||+|++|+++|+||..|++..+
T Consensus       120 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i  172 (205)
T 3kxr_A          120 SLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALV  172 (205)
T ss_dssp             GGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            99999  899999999999999999999999999999889999999999999864

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.37  E-value=1e-12  Score=96.81  Aligned_cols=113  Identities=18%  Similarity=0.254  Sum_probs=93.9

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .++++++++.+..+|.+.+.++++++++|++           ++.++.|++ +..|... +.+...   .....+++++|
T Consensus        15 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~-~~~~~~---~~~~~~v~~~m   78 (138)
T 2yzi_A           15 KKLLGVKPSTSVQEASRLMMEFDVGSLVVIN-----------DDGNVVGFF-TKSDIIR-RVIVPG---LPYDIPVERIM   78 (138)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHHH-HTTTTC---CCTTSBGGGTC
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCcEEEEE-eHHHHHH-HHHhcC---CcccCCHHHHh
Confidence            3677899999999999999999999999996           566788888 7776311 122111   13356899999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+  ++.++++++++.++++.|.+++.+++ |+|++|+++|+||.+|+++..
T Consensus        79 ~~--~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~  127 (138)
T 2yzi_A           79 TR--NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEAS  127 (138)
T ss_dssp             BC--SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHH
T ss_pred             hC--CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHH
Confidence            99  89999999999999999999999999 999889999999999999864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.36  E-value=8.6e-13  Score=100.09  Aligned_cols=113  Identities=17%  Similarity=0.165  Sum_probs=94.0

Q ss_pred             ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccccc
Q 028558           13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK   92 (207)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~   92 (207)
                      +++.++.+..+|.+.|.++++++++|++           ++..+.|++ +..|... .++.   .......+++++|++.
T Consensus        27 ~~v~~~~~~~~a~~~m~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~-~~~~---~~~~~~~~v~~~m~~~   90 (159)
T 3fv6_A           27 VVIHENVSVYDAICTMFLEDVGTLFVVD-----------RDAVLVGVL-SRKDLLR-ASIG---QQELTSVPVHIIMTRM   90 (159)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHHH-HHTS---CSCTTTCBGGGTSEET
T ss_pred             EEECCCCcHHHHHHHHHHCCCCEEEEEc-----------CCCcEEEEE-eHHHHHH-Hhhc---cCcccCcCHHHHHcCC
Confidence            4999999999999999999999999996           567788888 7777311 1111   1223456899999974


Q ss_pred             CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCC---cEEEEEehhhHHhhh
Q 028558           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALD  141 (207)
Q Consensus        93 ~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g---~lvGiVt~~dl~~~~  141 (207)
                      .++.++.+++++.++++.|.+++++++||+|++|   +++|+||.+||++.+
T Consensus        91 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l  142 (159)
T 3fv6_A           91 PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL  142 (159)
T ss_dssp             TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHH
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHH
Confidence            4688999999999999999999999999999887   999999999999864

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.35  E-value=1.4e-12  Score=94.23  Aligned_cols=111  Identities=16%  Similarity=0.173  Sum_probs=91.9

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..+|.+.+.+++.++++|++            +.++.|++ +..|..  +.+...  ......+++++|.
T Consensus        10 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd------------~~~~~G~i-t~~dl~--~~~~~~--~~~~~~~v~~~m~   72 (125)
T 1pbj_A           10 DVDTIDITASLEDVLRNYVENAKGSSVVVK------------EGVRVGIV-TTWDVL--EAIAEG--DDLAEVKVWEVME   72 (125)
T ss_dssp             SCCEEETTCBHHHHHHHHHHHCCCEEEEEE------------TTEEEEEE-EHHHHH--HHHHHT--CCTTTSBHHHHCB
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEEe------------CCeeEEEE-eHHHHH--HHHhcC--CcccccCHHHHcC
Confidence            577899999999999999999999999994            34566777 777731  222221  1234568999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +  ++.++++++++.++++.|.+++.+++||+|+ |+++|+||.+|+++.+
T Consensus        73 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           73 R--DLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAK  120 (125)
T ss_dssp             C--GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHH
T ss_pred             C--CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            9  8999999999999999999999999999997 9999999999999864

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.35  E-value=2.5e-12  Score=85.23  Aligned_cols=69  Identities=28%  Similarity=0.426  Sum_probs=56.7

Q ss_pred             ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhhh
Q 028558           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT  174 (207)
Q Consensus        95 ~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (207)
                      ++++.+++++.+|+++|.+++++++||+| +|+++||||.+|+++.....+.                          ..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~--------------------------~~   54 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK--------------------------NP   54 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC--------------------------CG
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC--------------------------Cc
Confidence            68999999999999999999999999998 6899999999999865422111                          12


Q ss_pred             cCCcccccccCCCeEe
Q 028558          175 NGKMVGDLMTPAPVVV  190 (207)
Q Consensus       175 ~~~~v~~im~~~~~~v  190 (207)
                      .+.+++++|+++++++
T Consensus        55 ~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A           55 KEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             GGCBGGGTCEECTTCC
T ss_pred             ccCCHHHhcCCCCeEC
Confidence            3568999999988764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.34  E-value=1.8e-12  Score=98.01  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=82.1

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC--CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~--~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~  157 (207)
                      ....+|+++|++  ++.++++++++.+|++.|.+++++++||+|+  +|+++|+||.+|+.+........          
T Consensus        10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~----------   77 (164)
T 2pfi_A           10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS----------   77 (164)
T ss_dssp             CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC--------------
T ss_pred             ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc----------
Confidence            445789999999  8999999999999999999999999999996  78999999999998754211000          


Q ss_pred             cchhhhHHHHHHHHhhhcCCcccccccCC------CeEecCCCCHHHHHHHHhhcC
Q 028558          158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPA------PVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~------~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  . ......++.++|.++      ++++++++++.+++++|.+++
T Consensus        78 ------------~-~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~  120 (164)
T 2pfi_A           78 ------------R-APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLN  120 (164)
T ss_dssp             ----------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTT
T ss_pred             ------------c-CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhC
Confidence                        0 001234677777765      789999999999999998764

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.34  E-value=1.9e-12  Score=97.69  Aligned_cols=98  Identities=18%  Similarity=0.262  Sum_probs=82.0

Q ss_pred             cccccccccc----CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           83 YTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        83 ~~v~~vm~~~----~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      .+|+++|++.    .++.++++++++.+|++.|.+++++++||++ +|+++|+||.+|+++.....+.            
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~------------   73 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQER------------   73 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTC------------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccC------------
Confidence            4699999963    2679999999999999999999999999966 7999999999999976422110            


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                    .....++.++|.++++++++++++.+++++|.+++
T Consensus        74 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~  108 (157)
T 4fry_A           74 --------------SSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHR  108 (157)
T ss_dssp             --------------CSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHT
T ss_pred             --------------CccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcC
Confidence                          01356799999999999999999999999998764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.34  E-value=2e-12  Score=100.38  Aligned_cols=114  Identities=16%  Similarity=0.122  Sum_probs=94.2

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +++++.++.+..+|.+.+.++++++++|++           +..++.+++ +..|... .+...  .......+++++|.
T Consensus        18 ~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd-----------~~g~~vGiv-t~~dl~~-~~~~~--~~~~~~~~v~~im~   82 (184)
T 1pvm_A           18 NFKTVNWNTTVFDAVKIMNENHLYGLVVKD-----------DNGNDVGLL-SERSIIK-RFIPR--NKKPDEVPIRLVMR   82 (184)
T ss_dssp             TCCEEETTCBHHHHHHHHHHHTCCEEEEEC-----------TTSCEEEEE-EHHHHHH-HTGGG--CCCGGGSBGGGTSB
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCcEEEEE-eHHHHHH-HHhhc--ccCcccCCHHHHhC
Confidence            577899999999999999999999999996           456778888 7777311 11110  11234568999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++.+
T Consensus        83 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           83 K--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             S--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             C--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            9  899999999999999999999999999999889999999999999753

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.33  E-value=2.6e-12  Score=95.02  Aligned_cols=97  Identities=19%  Similarity=0.292  Sum_probs=78.3

Q ss_pred             ccccc---cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558           83 YTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  159 (207)
Q Consensus        83 ~~v~~---vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~  159 (207)
                      .++++   +|.+  ++.++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+++.......             
T Consensus         8 ~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-------------   72 (144)
T 2nyc_A            8 IPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY-------------   72 (144)
T ss_dssp             SBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC---------------
T ss_pred             cchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccc-------------
Confidence            35677   8888  89999999999999999999999999999988999999999999875421000             


Q ss_pred             hhhhHHHHHHHHhhhcCCcccccccC------CCeEecCCCCHHHHHHHHhhcC
Q 028558          160 TWKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                   .....++.++|.+      +++++++++++.+++++|.+++
T Consensus        73 -------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~  113 (144)
T 2nyc_A           73 -------------NDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR  113 (144)
T ss_dssp             ---------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHT
T ss_pred             -------------ccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCC
Confidence                         0134678888875      6789999999999999998753

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.33  E-value=2.3e-12  Score=99.46  Aligned_cols=115  Identities=10%  Similarity=0.115  Sum_probs=92.8

Q ss_pred             ccccc--cCCCCCCcccccccccCCCEEEee--CCCCcccccccccCCceeeeecccchhhhhhhhhhcc----------
Q 028558           11 SVARL--RAPPAGRTSGRTSFALQLPCLLLS--RPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA----------   76 (207)
Q Consensus        11 ~~~~~--~~~~~~~~~~~~~~~~~v~~livt--~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~----------   76 (207)
                      |++++  +++.+..+|.+.+.++++++++|+  +           +..++.|++ +..|... .+.....          
T Consensus        24 ~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d-----------~~~~lvGii-t~~dl~~-~~~~~~~~~~~~~~~~~   90 (185)
T 2j9l_A           24 PLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR-----------ESQRLVGFV-LRRDLII-SIENARKKQDGVVSTSI   90 (185)
T ss_dssp             CCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT-----------TTCBEEEEE-EHHHHHH-HHHHHHTSCSCCCTTCE
T ss_pred             ceEEEecCCCccHHHHHHHHHhcCCCceeEEEEC-----------CCCeEEEEE-EHHHHHH-HHHhhcccCCCccccce
Confidence            36788  999999999999999999999999  5           566777888 7777211 1111000          


Q ss_pred             -----------CCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           77 -----------APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        77 -----------~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                                 .......+++++|.+  ++.++++++++.++++.|.+++.+++||+| +|+++|+||.+|+++.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l  163 (185)
T 2j9l_A           91 IYFTEHSPPLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHI  163 (185)
T ss_dssp             EECSSSCCCCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             eecccCCcccccccccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence                       011345689999998  899999999999999999999999999999 89999999999999865

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.33  E-value=1.9e-12  Score=98.31  Aligned_cols=114  Identities=16%  Similarity=0.201  Sum_probs=92.7

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc------CCCCCccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA------APSSGVYT   84 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~------~~~~~~~~   84 (207)
                      ++++++++.+..+|.+.+.++++++++|++           ++.++.|++ +..|... .+. ...      .......+
T Consensus        14 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd-----------~~~~lvGiv-t~~dl~~-~~~-~~~~~~~~~~~~~~~~~   79 (160)
T 2o16_A           14 HPHTLLRTHTLNDAKHLMEALDIRHVPIVD-----------ANKKLLGIV-SQRDLLA-AQE-SSLQRSAQGDSLAFETP   79 (160)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-----------TTCBEEEEE-EHHHHHH-HHH-HHCC---------CCCB
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCcEEEEE-eHHHHHH-HHH-HhhcccccccchhcccC
Confidence            577899999999999999999999999996           556778888 7777311 111 100      01233568


Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++++|.+  ++.++++++++.++++.|.+++.+.+||+|+ |+++|+||.+||++.+
T Consensus        80 v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~  133 (160)
T 2o16_A           80 LFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIA  133 (160)
T ss_dssp             HHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHH
T ss_pred             HHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            9999999  8999999999999999999999999999997 9999999999999854

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.33  E-value=2.5e-12  Score=107.19  Aligned_cols=93  Identities=27%  Similarity=0.364  Sum_probs=83.7

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHc-----CCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCC
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  154 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~-----~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~  154 (207)
                      ....+|+++|++  +++++++++++.++++.|.++     +++++||+|++|+++|+||.+|++...             
T Consensus       134 ~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~-------------  198 (286)
T 2oux_A          134 YEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND-------------  198 (286)
T ss_dssp             SCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC-------------
T ss_pred             CChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC-------------
Confidence            456789999999  999999999999999999987     889999999889999999999998631             


Q ss_pred             CcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                          ...++.++|.++++++++++++.+++++|.+++
T Consensus       199 --------------------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~  231 (286)
T 2oux_A          199 --------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYD  231 (286)
T ss_dssp             --------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHT
T ss_pred             --------------------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcC
Confidence                                346799999999999999999999999998764

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.33  E-value=1.8e-12  Score=95.41  Aligned_cols=113  Identities=19%  Similarity=0.274  Sum_probs=92.2

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..+|.+.+.+++.++++|++           ++.++.|++ +..|.. .+.+..   ......+++++|.
T Consensus        17 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~-~~~~~~---~~~~~~~v~~~m~   80 (138)
T 2p9m_A           17 NVITAKRHEGVVEAFEKMLKYKISSLPVID-----------DENKVIGIV-TTTDIG-YNLIRD---KYTLETTIGDVMT   80 (138)
T ss_dssp             SCCCEETTSBHHHHHHHHHHHTCCEEEEEC-----------TTCBEEEEE-EHHHHH-HHHTTT---CCCSSCBHHHHSC
T ss_pred             CceEECCCCcHHHHHHHHHHCCCcEEEEEC-----------CCCeEEEEE-EHHHHH-HHHHhh---cccCCcCHHHHhC
Confidence            677899999999999999999999999996           456677887 666530 111111   1234568999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcC-----CCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~-----~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +  ++.++++++++.++++.|.+++     .+++||+|++|+++|+||.+|+++..
T Consensus        81 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  134 (138)
T 2p9m_A           81 K--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTI  134 (138)
T ss_dssp             S--SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             C--CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHH
Confidence            9  8999999999999999999999     99999999889999999999999753

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.32  E-value=2.2e-12  Score=94.49  Aligned_cols=111  Identities=15%  Similarity=0.218  Sum_probs=91.5

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      ++++++++.+..+|.+.+.+++.++++|++            +.++.|++ +..|..  +.+...   .....+++++|.
T Consensus        13 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd------------~~~~~Giv-t~~dl~--~~~~~~---~~~~~~v~~~~~   74 (133)
T 2ef7_A           13 QVISVTKDAKLNDIAKVMTEKNIGSVIVVD------------GNKPVGII-TERDIV--KAIGKG---KSLETKAEEFMT   74 (133)
T ss_dssp             SCCEEETTCBHHHHHHHHHHHTCSEEEEEE------------TTEEEEEE-EHHHHH--HHHHTT---CCTTCBGGGTSE
T ss_pred             CCEEECCCCcHHHHHHHHHhcCCCEEEEEE------------CCEEEEEE-cHHHHH--HHHhcC---CCcccCHHHHcC
Confidence            467899999999999999999999999994            34566777 766631  222221   123468999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +  ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++..
T Consensus        75 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  123 (133)
T 2ef7_A           75 A--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAI  123 (133)
T ss_dssp             E--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             C--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence            8  899999999999999999999999999999889999999999999754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.32  E-value=2.2e-12  Score=95.36  Aligned_cols=117  Identities=12%  Similarity=0.116  Sum_probs=92.1

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .++++++++.+..+|.+.+.+++++++.|++           +..++.|++ +..|...  .+.... ......+++++|
T Consensus        19 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~--~~~~~~-~~~~~~~v~~~m   83 (144)
T 2nyc_A           19 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-----------ENGYLINVY-EAYDVLG--LIKGGI-YNDLSLSVGEAL   83 (144)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-----------TTCBEEEEE-EHHHHHH--HHHTC-----CCSBHHHHH
T ss_pred             CCceEECCCCcHHHHHHHHHHcCcceeeEEc-----------CCCcEEEEE-cHHHHHH--Hhcccc-cccCCccHHHHH
Confidence            4677899999999999999999999999996           556778888 7777311  111110 112346899999


Q ss_pred             ccc----CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~----~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+.    .++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus        84 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l  139 (144)
T 2nyc_A           84 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  139 (144)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             hcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHH
Confidence            862    1478999999999999999999999999999889999999999999754

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.32  E-value=6.8e-12  Score=103.95  Aligned_cols=91  Identities=31%  Similarity=0.383  Sum_probs=82.2

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHc-----CCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCc
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~-----~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~  156 (207)
                      ..+++++|++  +++++++++++.++++.|.++     ++.++||+|++|+++|+||.+|++..                
T Consensus       134 ~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----------------  195 (278)
T 2yvy_A          134 EDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA----------------  195 (278)
T ss_dssp             TTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS----------------
T ss_pred             cchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC----------------
Confidence            4589999999  999999999999999999987     78999999988999999999999863                


Q ss_pred             ccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                       ....++.++|.++++++++++++.+++++|.+++
T Consensus       196 -----------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  229 (278)
T 2yvy_A          196 -----------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYD  229 (278)
T ss_dssp             -----------------CTTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHT
T ss_pred             -----------------CCCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcC
Confidence                             1346799999989999999999999999998764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.31  E-value=3.8e-12  Score=95.76  Aligned_cols=114  Identities=12%  Similarity=0.120  Sum_probs=91.4

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhh-ccC-CCCCccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTAN-SAA-PSSGVYTVGDF   88 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~-~~~-~~~~~~~v~~v   88 (207)
                      +++++.++.+..+|.+.+.++++++++|++           +..++.|++ +..|... .+... ... ......+++++
T Consensus        22 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~~Giv-t~~dl~~-~~~~~~~~~~~~~~~~~v~~~   88 (157)
T 2emq_A           22 KVAHVQPGNYLDHALLVLTKTGYSAIPVLD-----------TSYKLHGLI-SMTMMMD-AILGLERIEFERLETMKVEEV   88 (157)
T ss_dssp             GSCCBCTTSBHHHHHHHHHHSSSSEEEEEC-----------TTCCEEEEE-EHHHHHH-HSBCSSSBCGGGGGTCBGGGT
T ss_pred             cceEECCCCcHHHHHHHHHHCCceEEEEEc-----------CCCCEEEEe-eHHHHHH-HHhcccccchHHhcCCcHHHH
Confidence            677899999999999999999999999996           556777888 7777311 11100 000 01234579999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |.+  ++.++++++++.++++.|.++++  +||+|++|+++|+||.+|+++.+
T Consensus        89 m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~  137 (157)
T 2emq_A           89 MNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQL  137 (157)
T ss_dssp             CBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHH
T ss_pred             hCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHH
Confidence            999  99999999999999999999987  99999889999999999999864

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.30  E-value=9.8e-12  Score=101.93  Aligned_cols=60  Identities=23%  Similarity=0.391  Sum_probs=54.8

Q ss_pred             CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC--CcEEEEEehhhHHhhh
Q 028558           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALD  141 (207)
Q Consensus        80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~--g~lvGiVt~~dl~~~~  141 (207)
                      ...++|+++|++  +++++.+++++.++.++|.++++++|||||++  ++++|+|+++||++++
T Consensus        10 ~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l   71 (250)
T 2d4z_A           10 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLL   71 (250)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHH
T ss_pred             cCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHH
Confidence            456789999999  99999999999999999999999999999963  6899999999998754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.30  E-value=4.8e-12  Score=113.89  Aligned_cols=98  Identities=18%  Similarity=0.238  Sum_probs=85.2

Q ss_pred             CcccccccccccCCceEECCC-CCHHHHHHHHHHcCCCEeEEEc-CCCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           81 GVYTVGDFMTTKEELHVVKPT-TTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~-~~v~ea~~~m~~~~~~~lpVvd-~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      ...+|+++|++  +++++.++ +++.+++++|.+++++++||+| ++|+++|+||.+||++.+...              
T Consensus       382 ~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~--------------  445 (527)
T 3pc3_A          382 WSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM--------------  445 (527)
T ss_dssp             TTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH--------------
T ss_pred             cCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc--------------
Confidence            36789999999  99999999 9999999999999999999999 789999999999999754110              


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                   ......++.++|+++++++++++++.+++++|.+++
T Consensus       446 -------------~~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~  481 (527)
T 3pc3_A          446 -------------NRQQSDPAIKALNKRVIRLNESEILGKLARVLEVDP  481 (527)
T ss_dssp             -------------CCCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCS
T ss_pred             -------------cCcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCC
Confidence                         012356899999999999999999999999997753

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.30  E-value=4e-12  Score=107.04  Aligned_cols=164  Identities=14%  Similarity=0.105  Sum_probs=118.1

Q ss_pred             cccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhh-c---cCC---
Q 028558            6 LPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTAN-S---AAP---   78 (207)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~-~---~~~---   78 (207)
                      ..+..++++++++.+..+|.+.+.+++++++.|++          .+..++.|++ +..|... .+... .   ...   
T Consensus        28 m~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d----------~~~~~~vGiv-~~~Dl~~-~~~~~~~~~~~~~~~~   95 (334)
T 2qrd_G           28 LPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWD----------SEANKFAGLL-TMADFVN-VIKYYYQSSSFPEAIA   95 (334)
T ss_dssp             SCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEE----------TTTTEEEEEE-CHHHHHH-HHHHHHHHCSCGGGGG
T ss_pred             CCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEe----------CCCCeEEEEE-EHHHHHH-HHHHHhhccCCccHHH
Confidence            44566788999999999999999999999999985          1235788888 8888311 11100 0   000   


Q ss_pred             CCCccccc-------ccccccCCc--eEECCCCCHHHHHHHHHHcCCCEeEEEcCCC-c----EEEEEehhhHHhhhccc
Q 028558           79 SSGVYTVG-------DFMTTKEEL--HVVKPTTTVDEALEILVEKRITGFPVIDDDW-K----LVGLVSDYDLLALDSIS  144 (207)
Q Consensus        79 ~~~~~~v~-------~vm~~~~~~--~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g-~----lvGiVt~~dl~~~~~~~  144 (207)
                      .....+++       ++|.+  ++  +++.+++++.++++.|.+++++++||+|++| +    ++|+||.+|+++.....
T Consensus        96 ~~~~~~~~~i~~~l~~im~~--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~  173 (334)
T 2qrd_G           96 EIDKFRLLGLREVERKIGAI--PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  173 (334)
T ss_dssp             GGGSCBHHHHHHHHHHHTCS--CSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHH
T ss_pred             HHhhhchhhHHHHHHhhccC--CCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhh
Confidence            00022232       34666  55  9999999999999999999999999998765 4    99999999999754210


Q ss_pred             CCCCCCCCCCCcccchhhhHHHHHHHHhhhcCCcccc---cccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGD---LMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ..                      .  ......++.+   +|.++++++++++++.+++++|.+++
T Consensus       174 ~~----------------------~--~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~  215 (334)
T 2qrd_G          174 CK----------------------E--TAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKN  215 (334)
T ss_dssp             CG----------------------G--GGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHT
T ss_pred             cc----------------------c--hhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcC
Confidence            00                      0  0112456777   58889999999999999999998753

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.29  E-value=3.6e-12  Score=96.40  Aligned_cols=114  Identities=13%  Similarity=0.070  Sum_probs=90.9

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc--CCceeeeecccchhhhhhhhhhccC--CCCCccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS--SDRVSALRRSSAVFASGTLTANSAA--PSSGVYTVG   86 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~--~~~~~~~~~s~~d~~~~~~~~~~~~--~~~~~~~v~   86 (207)
                      +++++.++.+..+|.+.|.++++++++|++           +  ..++.|++ +..|..  +.+.....  ......++.
T Consensus        22 ~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd-----------~~~~~~~~Giv-t~~dl~--~~~~~~~~~~~~~~~~~v~   87 (164)
T 2pfi_A           22 SITTLAKDTPLEEVVKVVTSTDVTEYPLVE-----------STESQILVGIV-QRAQLV--QALQAEPPSRAPGHQQCLQ   87 (164)
T ss_dssp             CCCCEETTCBHHHHHHHHHTCCCSEEEEES-----------CTTTCBEEEEE-EHHHHH--HHHHC-------CCCCBHH
T ss_pred             CCeEECCCCcHHHHHHHHHhCCCCceeEEe-----------cCCCCEEEEEE-EHHHHH--HHHHhhccccCCcccchhh
Confidence            577899999999999999999999999996           3  46677888 777731  11111100  011245789


Q ss_pred             ccccccCC------ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           87 DFMTTKEE------LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        87 ~vm~~~~~------~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++|.+  +      +.++.+++++.++++.|.+++.+++||+| +|+++|+||.+|+++.+
T Consensus        88 ~~m~~--~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~  145 (164)
T 2pfi_A           88 DILAR--GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAI  145 (164)
T ss_dssp             HHHHT--TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             hhhcc--cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            99988  6      78999999999999999999999999999 79999999999999864

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.29  E-value=5e-12  Score=97.79  Aligned_cols=109  Identities=16%  Similarity=0.107  Sum_probs=89.7

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      ..+++++++.+..+|.+.|.++++++++|++           .. .++.|++ +..|...  .+...     ...+++  
T Consensus        46 ~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd-----------~~~~~lvGiv-t~~Dl~~--~~~~~-----~~~~v~--  104 (173)
T 3ocm_A           46 TDVSWVNIDDDAATIRQQLTAAPHSFFPVCR-----------GSLDEVVGIG-RAKDLVA--DLITE-----GRVRRN--  104 (173)
T ss_dssp             GGCCCEETTSCHHHHHHHHHHSSCSEEEEES-----------SSTTSEEEEE-EHHHHHH--HHHHH-----SSCCGG--
T ss_pred             HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEe-----------CCCCCEEEEE-EHHHHHH--HHhcC-----CcchhH--
Confidence            4577999999999999999999999999996           43 6788888 7777311  11111     124577  


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.+
T Consensus       105 ~~~--~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l  155 (173)
T 3ocm_A          105 RLR--DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAI  155 (173)
T ss_dssp             GSB--CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHH
T ss_pred             hcC--CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHH
Confidence            556  689999999999999999999999999999889999999999999865

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.28  E-value=8.7e-12  Score=101.02  Aligned_cols=58  Identities=22%  Similarity=0.396  Sum_probs=54.5

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ..+|+++|++  ++.++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++..
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~   63 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATY   63 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            3479999999  899999999999999999999999999999889999999999999865

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.26  E-value=4.8e-12  Score=95.65  Aligned_cols=115  Identities=12%  Similarity=0.167  Sum_probs=91.7

Q ss_pred             ccccccCCCCCCcccccccccCCCE-EEeeCCCCcccccccccCCceeeeecccchhhhhhh------hhhc-----cCC
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPC-LLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTL------TANS-----AAP   78 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~-livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~------~~~~-----~~~   78 (207)
                      ++++++++.+..+|.+.+.++++++ ++|++           ++ ++.|++ +..|....-.      +...     ...
T Consensus        25 ~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd-----------~~-~~vGiv-t~~dl~~~~~~~~~~~~~~~~~~~~~~~   91 (157)
T 1o50_A           25 KPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-----------DN-KLVGMI-PVMHLLKVSGFHFFGFIPKEELIRSSMK   91 (157)
T ss_dssp             CCEEECTTCBHHHHHHHHHHSTTCCEEEEEE-----------TT-EEEEEE-EHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             CCceECCCCCHHHHHHHHHhCCCCccEEEEE-----------CC-EEEEEE-EHHHHHHHHhhhHHhhhccHHHHHHHHH
Confidence            5778999999999999999999999 99986           44 777888 7777311100      0000     001


Q ss_pred             CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .....+++++|.+   +.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        92 ~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l  151 (157)
T 1o50_A           92 RLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL  151 (157)
T ss_dssp             CCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             HHcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            2345689999997   78999999999999999999999999999889999999999999754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.24  E-value=6.2e-12  Score=95.09  Aligned_cols=114  Identities=11%  Similarity=0.104  Sum_probs=91.1

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhh-hcc-CCCCCccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTA-NSA-APSSGVYTVGDF   88 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~-~~~-~~~~~~~~v~~v   88 (207)
                      +++++.++.+..+|.+.+.++++++++|++           +..++.|++ +..|... .... ..+ .......+++++
T Consensus        25 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-----------~~~~lvGiv-t~~dl~~-~~~~~~~~~~~~~~~~~v~~~   91 (159)
T 1yav_A           25 KVAHVQVGNNLEHALLVLTKTGYTAIPVLD-----------PSYRLHGLI-GTNMIMN-SIFGLERIEFEKLDQITVEEV   91 (159)
T ss_dssp             GSCCEETTCBHHHHHHHHHHHCCSEEEEEC-----------TTCBEEEEE-EHHHHHH-HHBCSSSBCGGGTTTSBHHHH
T ss_pred             ceEEECCCCcHHHHHHHHHhCCCcEEEEEC-----------CCCCEEEEe-EHHHHHH-HhhhhcccchhhhccCCHHHh
Confidence            477899999999999999999999999996           556777888 7777311 1110 000 001345689999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |.+  ++.++.+++++.++++.|.++++  +||+|++|+++|+||.+|+++.+
T Consensus        92 m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~  140 (159)
T 1yav_A           92 MLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKEL  140 (159)
T ss_dssp             SBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHH
T ss_pred             cCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHH
Confidence            999  89999999999999999998876  99999889999999999999864

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.24  E-value=5.4e-12  Score=115.89  Aligned_cols=126  Identities=14%  Similarity=0.067  Sum_probs=83.3

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHH-HcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCC---CCc
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILV-EKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM---FPE  156 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~-~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~---~~~  156 (207)
                      ..++|+++|++++++.++++++++.|+.+.|. +++++.+||+|++|+++|+||++|+++..............   ...
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            56799999995448999999999999999999 79999999999889999999999999865321100000000   000


Q ss_pred             ccchhhhHH-HHHHHHhh-----------------hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          157 VDSTWKTFN-EVQKLLSK-----------------TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       157 ~~~~~~~~~-~~~~~~~~-----------------~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      .. .+..+. .+......                 ....++.++|+++++++++++++.+++++|.+++
T Consensus       531 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~  598 (632)
T 3org_A          531 LL-DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLM  598 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTC
T ss_pred             cc-CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcC
Confidence            00 000000 00000000                 1112488999999999999999999999999874

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.22  E-value=1.3e-11  Score=102.87  Aligned_cols=108  Identities=12%  Similarity=0.136  Sum_probs=92.3

Q ss_pred             cccccccCCCCCCccccccccc-----CCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFAL-----QLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT   84 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~-----~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~   84 (207)
                      ..+++++++.+..+|.+.+.++     +++++.|++           ..+++.|++ +..|....          ....+
T Consensus       145 ~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd-----------~~~~lvGiv-t~~dll~~----------~~~~~  202 (286)
T 2oux_A          145 TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD-----------QENHLVGVI-SLRDLIVN----------DDDTL  202 (286)
T ss_dssp             SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEEC-----------TTCBEEEEE-EHHHHTTS----------CTTSB
T ss_pred             CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEc-----------CCCeEEEEE-EHHHHHcC----------CCCCc
Confidence            3678999999999999999987     888899996           566788888 66662111          23457


Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++++|.+  +++++++++++.++++.|.+++++++||+|++|+++|+||..|+++.+
T Consensus       203 v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i  257 (286)
T 2oux_A          203 IADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  257 (286)
T ss_dssp             HHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            9999999  899999999999999999999999999999889999999999999854

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.19  E-value=4e-11  Score=106.66  Aligned_cols=92  Identities=30%  Similarity=0.376  Sum_probs=82.5

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHc-----CCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCC
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~-----~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~  155 (207)
                      ...+++++|++  +++++++++++.++++.|.++     +++++||+|++++++|+||.+|++..               
T Consensus       153 ~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~---------------  215 (473)
T 2zy9_A          153 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------  215 (473)
T ss_dssp             CTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---------------
T ss_pred             CCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---------------
Confidence            45689999999  999999999999999999986     57899999988999999999999863               


Q ss_pred             cccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                        ..+.++.++|+++++++++++++++++++|.+++
T Consensus       216 ------------------~~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~  249 (473)
T 2zy9_A          216 ------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYD  249 (473)
T ss_dssp             ------------------CTTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHT
T ss_pred             ------------------CCCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcC
Confidence                              1356899999989999999999999999998864

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.18  E-value=2.8e-11  Score=100.23  Aligned_cols=107  Identities=18%  Similarity=0.220  Sum_probs=91.6

Q ss_pred             ccccccCCCCCCccccccccc-----CCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccc
Q 028558           11 SVARLRAPPAGRTSGRTSFAL-----QLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTV   85 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-----~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v   85 (207)
                      .+++++++.+..+|.+.+.++     ++.++.|++           +.+++.|++ +..|...     .     ....++
T Consensus       144 ~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd-----------~~~~lvGiv-t~~dll~-----~-----~~~~~v  201 (278)
T 2yvy_A          144 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD-----------EKGRLKGVL-SLRDLIV-----A-----DPRTRV  201 (278)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEEC-----------TTCBEEEEE-EHHHHHH-----S-----CTTCBS
T ss_pred             CceEECCCCcHHHHHHHHHHccCCccceeEEEEEC-----------CCCCEEEEE-EHHHHhc-----C-----CCCCcH
Confidence            678899999999999999887     789999996           566788888 6666211     1     124579


Q ss_pred             cccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        86 ~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +++|.+  +++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus       202 ~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i  255 (278)
T 2yvy_A          202 AEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  255 (278)
T ss_dssp             TTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred             HHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            999998  899999999999999999999999999999889999999999999864

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.15  E-value=1.2e-10  Score=104.43  Aligned_cols=161  Identities=16%  Similarity=0.248  Sum_probs=108.3

Q ss_pred             CeeccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc---cccCCceeeeecccch-hhhhhhhhhccC
Q 028558            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL---ATSSDRVSALRRSSAV-FASGTLTANSAA   77 (207)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~---~~~~~~~~~~~~s~~d-~~~~~~~~~~~~   77 (207)
                      |-+.+|+-..+.  +.+.+...-....+..++|.+--.. ......++   .++...+.++. .... ......+..-  
T Consensus        39 d~~~~p~~~~~~--~~~~~~~t~lt~~i~l~iPivsa~M-dtvTe~~lAia~a~~GgiGvIh-~~~~~~~q~~~V~~V--  112 (511)
T 3usb_A           39 DVLLVPAKSDVL--PREVSVKTVLSESLQLNIPLISAGM-DTVTEADMAIAMARQGGLGIIH-KNMSIEQQAEQVDKV--  112 (511)
T ss_dssp             GEEECCCCCCCC--TTTSBCCEEEETTEEESSSEEECSC-TTTCSHHHHHHHHHHTCEEEEC-SSSCHHHHHHHHHHH--
T ss_pred             EEEEECCccccc--ccceEeeeEeecccccCCCccccCc-hhhcHHHHHHHHHhcCCceeec-ccCCHHHHHHHHHHh--
Confidence            445667665542  3334554545556677777443322 22222223   23344443333 2222 1111112211  


Q ss_pred             CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC--CCcEEEEEehhhHHhhhcccCCCCCCCCCCC
Q 028558           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (207)
Q Consensus        78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~--~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~  155 (207)
                           ++.+++|.+  +++++++++++.+++++|.+++++.+||+|+  +++++|+||.+|++..               
T Consensus       113 -----~~~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---------------  170 (511)
T 3usb_A          113 -----KRSESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---------------  170 (511)
T ss_dssp             -----HTSSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---------------
T ss_pred             -----hcccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---------------
Confidence                 235677888  8999999999999999999999999999998  8999999999999752               


Q ss_pred             cccchhhhHHHHHHHHhhhcCCcccccccC-CCeEecCCCCHHHHHHHHhhcC
Q 028558          156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                       .....++.++|++ +++++++++++.+++++|.+++
T Consensus       171 -----------------~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~  206 (511)
T 3usb_A          171 -----------------QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYK  206 (511)
T ss_dssp             -----------------CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHT
T ss_pred             -----------------ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcC
Confidence                             1135679999997 8999999999999999998764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.13  E-value=3.4e-11  Score=107.69  Aligned_cols=161  Identities=19%  Similarity=0.234  Sum_probs=103.0

Q ss_pred             CeeccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc---cccCCceeeeecccch-hhhhhhhhhccC
Q 028558            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL---ATSSDRVSALRRSSAV-FASGTLTANSAA   77 (207)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~---~~~~~~~~~~~~s~~d-~~~~~~~~~~~~   77 (207)
                      |-+.+|+-..+.  +.+.+.....-..+..++|.+--.. ......++   .+....+.++. .+.. ......+..-  
T Consensus        15 d~~~~p~~~~~~--~~~~~~~t~lt~~i~l~iPivsa~M-dtVTe~~ma~a~a~~GGiGvI~-~n~s~e~qa~~V~~V--   88 (496)
T 4fxs_A           15 DVLLVPAHSTVL--PNTADLRTRLTKNIALNIPMVSASM-DTVTEARLAIALAQEGGIGFIH-KNMSIEQQAAQVHQV--   88 (496)
T ss_dssp             GEEECCCCCCCC--GGGCBCCEEEETTEEESSSEEECCC-TTTCSHHHHHHHHHHTCEEEEC-SSSCHHHHHHHHHHH--
T ss_pred             cEEEecCccccc--cccccccceeccccccCCCceecCc-chhhHHHHHHHHHHcCCcceec-CCCCHHHHHHHHHhc--
Confidence            345566655542  2234444444456677788554333 22233333   33444555554 3333 2222333322  


Q ss_pred             CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (207)
Q Consensus        78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~  157 (207)
                           .+++++|++  +++++++++++.+++++|.+++++.+||+|++++++|+||.+||+...                
T Consensus        89 -----k~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~----------------  145 (496)
T 4fxs_A           89 -----KIFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVT----------------  145 (496)
T ss_dssp             -----HHCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCC----------------
T ss_pred             -----ccccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcc----------------
Confidence                 246789998  999999999999999999999999999999889999999999997421                


Q ss_pred             cchhhhHHHHHHHHhhhcCCccccccc-C-CCeEecCCCCHHHHHHHHhhcC
Q 028558          158 DSTWKTFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                      ....++.++|+ + +++++++++++.+++++|.+++
T Consensus       146 ----------------~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~  181 (496)
T 4fxs_A          146 ----------------DLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKAR  181 (496)
T ss_dssp             ----------------CTTSBGGGTSEEGGGCCEEECC----CGGGTCC---
T ss_pred             ----------------cCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcC
Confidence                            13567999998 4 5899999999999999998763

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.11  E-value=2.1e-10  Score=102.82  Aligned_cols=111  Identities=17%  Similarity=0.170  Sum_probs=95.1

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc--CCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS--SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~--~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      .+++++++.+..++.+.+.+++++.+.|++           +  ..++.+++ +..|...         ......+++++
T Consensus       122 d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd-----------~g~~~~lvGiV-t~rDl~~---------~~~~~~~V~~v  180 (511)
T 3usb_A          122 DPFFLTPEHQVYDAEHLMGKYRISGVPVVN-----------NLDERKLVGII-TNRDMRF---------IQDYSIKISDV  180 (511)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHCCSEEEEES-----------CTTTCBEEEEE-EHHHHTT---------CCCSSSBHHHH
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCcEEEEEe-----------cCCCCEEEEEE-EehHhhh---------hccCCCcHHHh
Confidence            467999999999999999999999999996           4  56788888 7777311         12235689999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcc
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~  143 (207)
                      |++ +++++++++.++.+++++|.+++++.+||+|++|+++|+||.+|+++....
T Consensus       181 M~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          181 MTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             CCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            996 368999999999999999999999999999999999999999999987643

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.07  E-value=2.6e-11  Score=108.66  Aligned_cols=112  Identities=20%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC---CceeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS---DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD   87 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~---~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~   87 (207)
                      .+++++++.+..+|.+.|.+++++.+.|++           +.   .++.+++ +..|....        ......++++
T Consensus       106 ~~~~v~~~~tv~eal~~m~~~~~s~~pVvd-----------~~~~~g~lvGiV-t~~Dl~~~--------~~~~~~~V~d  165 (503)
T 1me8_A          106 SDSNVKPDQTFADVLAISQRTTHNTVAVTD-----------DGTPHGVLLGLV-TQRDYPID--------LTQTETKVSD  165 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEECCCCcHHHHHHHHHHcCceEEEEEE-----------CCCcCCeEEEEE-EHHHHHhh--------hccccCcHHH
Confidence            577999999999999999999999999996           33   5677888 77773111        1123457999


Q ss_pred             cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (207)
Q Consensus        88 vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~  142 (207)
                      +|++.++++++++++++.+++++|.+++++.+||+|++|+++|+||.+||++...
T Consensus       166 iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          166 MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             -------------------------------------------------------
T ss_pred             HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhh
Confidence            9999223999999999999999999999999999999999999999999998653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.05  E-value=3.5e-10  Score=92.64  Aligned_cols=52  Identities=15%  Similarity=0.045  Sum_probs=48.8

Q ss_pred             ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .+|.+  .++++.+++++.++..+|...|++++||++ +|+++||||++||++++
T Consensus       193 ~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai  244 (250)
T 2d4z_A          193 CRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  244 (250)
T ss_dssp             SCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            36999  899999999999999999999999999998 69999999999999865

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.02  E-value=4.1e-11  Score=106.55  Aligned_cols=111  Identities=17%  Similarity=0.184  Sum_probs=0.4

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      .+++.|+.+..+|.+.+-+++++.+.|+..|.        ...++.+++ |.+|.-.          .....+|+++|++
T Consensus       148 Pvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~--------~~~kLvGIv-T~RD~rf----------~d~~~~V~evMT~  208 (556)
T 4af0_A          148 PLCLGPDATVGDVLEIKAKFGFCGVPITETGE--------PDSKLLGIV-TGRDVQF----------QDAETPIKSVMTT  208 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEcCCCCCHHHHHHHHHHhCCCccccccccC--------cCCEEEEEE-ecccccc----------cccceEhhhhccc
Confidence            45999999999999999999999999996111        145677888 8888311          1123479999999


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcc
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~  143 (207)
                        ++++++.+.++.+|.++|.++++..+||+|++|+++|+||++|+.+...+
T Consensus       209 --~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~  258 (556)
T 4af0_A          209 --EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNY  258 (556)
T ss_dssp             ---------------------------------------------------C
T ss_pred             --ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhC
Confidence              99999999999999999999999999999999999999999999986543

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.01  E-value=6.8e-11  Score=105.56  Aligned_cols=160  Identities=21%  Similarity=0.248  Sum_probs=35.7

Q ss_pred             CeeccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc---cccCCceeeeecccch-hhhhhhhhhccC
Q 028558            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL---ATSSDRVSALRRSSAV-FASGTLTANSAA   77 (207)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~---~~~~~~~~~~~~s~~d-~~~~~~~~~~~~   77 (207)
                      |-+.+|+-..+  .+.+.+........+..++|.+--.. ......++   .+....+.++. .... ......+..-  
T Consensus        14 d~~~~p~~~~~--~~~~~~~~t~lt~~i~l~iPivsa~M-~tVTe~~lA~ala~~GGiGvI~-~~~~~e~~a~~v~~v--   87 (490)
T 4avf_A           14 DVLLIPGYSEV--LPKDVSLKTRLTRGIELNIPLVSAAM-DTVTEARLAIAMAQEGGIGIIH-KNMGIEQQAAEVRKV--   87 (490)
T ss_dssp             GEEECCCCBCS--CGGGSCCCEEEETTEEESSSEEECSC-TTTCSHHHHHHHHHHTSEEEEC-CSSCHHHHHHHHHHH--
T ss_pred             eEEEeCCCCcc--cccceeeecccccCcccCCCccccch-hhhCHHHHHHHHHHcCCCcccc-CCCCHHHHHHHhhhh--
Confidence            44556665544  22245555555667778888655443 33333333   23344444443 3333 2222332221  


Q ss_pred             CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (207)
Q Consensus        78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~  157 (207)
                           .+++++|.+  +++++++++++.+++++|.+++++.+||+| +++++|+||.+|+....                
T Consensus        88 -----k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~----------------  143 (490)
T 4avf_A           88 -----KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKP----------------  143 (490)
T ss_dssp             -----HHCCC----------------------------------------------------------------------
T ss_pred             -----cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhcc----------------
Confidence                 257889998  999999999999999999999999999999 89999999999996421                


Q ss_pred             cchhhhHHHHHHHHhhhcCCccccccc-C-CCeEecCCCCHHHHHHHHhhcC
Q 028558          158 DSTWKTFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                      ....++.++|+ + +++++++++++.+++++|.+++
T Consensus       144 ----------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~  179 (490)
T 4avf_A          144 ----------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENR  179 (490)
T ss_dssp             ----------------------------------------------------
T ss_pred             ----------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcC
Confidence                            13567999998 4 6899999999999999998763

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.99  E-value=4.4e-10  Score=103.24  Aligned_cols=116  Identities=11%  Similarity=-0.057  Sum_probs=86.0

Q ss_pred             cccccccCCCCCCccccccc-ccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhh--hh---------------
Q 028558           10 ISVARLRAPPAGRTSGRTSF-ALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASG--TL---------------   71 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~-~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~--~~---------------   71 (207)
                      .++++++++.+..++.+.+. +++.+.+.|++           ++.++.+++ +..|....  +.               
T Consensus       463 ~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd-----------~~~~lvGiV-t~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          463 EGEPHLFPDSEPQHIKGILEKFPNRLVFPVID-----------ANGYLLGAI-SRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBC-----------TTCBBCCEE-SHHHHTTTTTTC---------------
T ss_pred             CCceEecCCCcHHHHHHHHHhcCCcceEEEEe-----------cCCeEEEEE-EHHHHHHHHHHHhhhccccccccccee
Confidence            46789999999999999999 89999999997           344555666 65551110  00               


Q ss_pred             ----------hhhccCCC----------------CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC
Q 028558           72 ----------TANSAAPS----------------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD  125 (207)
Q Consensus        72 ----------~~~~~~~~----------------~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~  125 (207)
                                +.......                ....+++++|++  ++.++++++++.++++.|.+++++++||+ ++
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~  607 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER  607 (632)
T ss_dssp             ----------------------------------------CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence                      00000000                001138899999  99999999999999999999999999999 58


Q ss_pred             CcEEEEEehhhHHhh
Q 028558          126 WKLVGLVSDYDLLAL  140 (207)
Q Consensus       126 g~lvGiVt~~dl~~~  140 (207)
                      |+++|+||++|+++.
T Consensus       608 G~lvGIVT~~Dll~~  622 (632)
T 3org_A          608 GKLVGIVEREDVAYG  622 (632)
T ss_dssp             TEEEEEEEGGGTEEC
T ss_pred             CEEEEEEehhhHHHH
Confidence            999999999999975

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.98  E-value=2.5e-10  Score=101.46  Aligned_cols=107  Identities=18%  Similarity=0.224  Sum_probs=91.1

Q ss_pred             ccccccCCCCCCccccccccc-----CCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccc
Q 028558           11 SVARLRAPPAGRTSGRTSFAL-----QLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTV   85 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-----~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v   85 (207)
                      .+++++++.+..+|.+.+.++     ++..+.|++           +++++.|++ +-.|...      .    ....++
T Consensus       164 ~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd-----------~~~~lvGiV-t~~Dll~------~----~~~~~v  221 (473)
T 2zy9_A          164 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD-----------EKGRLKGVL-SLRDLIV------A----DPRTRV  221 (473)
T ss_dssp             CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEEC-----------TTSBEEEEE-EHHHHHH------S----CTTSBG
T ss_pred             CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEEC-----------CCCcEEEEE-EHHHHhc------C----CCCCcH
Confidence            678999999999999999886     478888886           567788888 6666311      1    124579


Q ss_pred             cccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        86 ~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +++|++  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus       222 ~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i  275 (473)
T 2zy9_A          222 AEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  275 (473)
T ss_dssp             GGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHH
Confidence            999998  899999999999999999999999999999999999999999999754

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.97  E-value=1e-10  Score=104.48  Aligned_cols=112  Identities=17%  Similarity=0.195  Sum_probs=84.0

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      ..+++++++.+..++.+.+.+++++.+.|++           +..++.+++ +.+|..      .   ......+++++|
T Consensus        97 ~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd-----------~~~~lvGiV-t~rDL~------~---~~~~~~~v~diM  155 (496)
T 4fxs_A           97 THPVTVRPEQTIADVMELTHYHGFAGFPVVT-----------ENNELVGII-TGRDVR------F---VTDLTKSVAAVM  155 (496)
T ss_dssp             BCCCCBCSSSBHHHHHHHHTSSCCCEEEEEC-----------SSSBEEEEE-EHHHHT------T---CCCTTSBGGGTS
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEc-----------cCCEEEEEE-EHHHHh------h---cccCCCcHHHHh
Confidence            4567999999999999999999999999997           567888888 777731      1   112346799999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~  142 (207)
                      ++.+++++++++.++.+++++|.+++++.+||+|++|+++|+||.+|+++...
T Consensus       156 ~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          156 TPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             EEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence            94334899999999999999999999999999999999999999999998653

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.96  E-value=1.7e-09  Score=96.38  Aligned_cols=90  Identities=26%  Similarity=0.394  Sum_probs=80.5

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEc--CCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd--~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      .++++|++  ++.++++++++.++++.|.+++++.+||+|  ++++++|+||.+|++...                    
T Consensus        91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~--------------------  148 (491)
T 1zfj_A           91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--------------------  148 (491)
T ss_dssp             HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--------------------
T ss_pred             hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--------------------
Confidence            46789999  999999999999999999999999999999  789999999999998631                    


Q ss_pred             hhHHHHHHHHhhhcCCcccccccC-CCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  ....++.++|++ +++++++++++.+++++|.+++
T Consensus       149 ------------~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~  183 (491)
T 1zfj_A          149 ------------DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHR  183 (491)
T ss_dssp             ------------CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTT
T ss_pred             ------------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcC
Confidence                        134679999998 8899999999999999998874

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.94  E-value=5.2e-10  Score=100.60  Aligned_cols=113  Identities=5%  Similarity=0.010  Sum_probs=91.3

Q ss_pred             cccccccCC-CCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558           10 ISVARLRAP-PAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus        10 ~~~~~~~~~-~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      .+++++.++ .+..+|.+.|.++++++++|++          .++.++.+++ |..|... .+...   ......+|+++
T Consensus       392 ~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd----------~~~g~lvGiV-t~~Dll~-~l~~~---~~~~~~~V~~i  456 (527)
T 3pc3_A          392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVD----------QDDGSVLGVV-GQETLIT-QIVSM---NRQQSDPAIKA  456 (527)
T ss_dssp             CCCSCCEETTCBHHHHHHHHHHHTCSEEEEEC----------TTTCCEEEEE-EHHHHHH-HHHHH---CCCTTSBGGGG
T ss_pred             CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEE----------CCCCEEEEEE-EHHHHHH-HHHhc---cCcCCCcHHHH
Confidence            367899999 9999999999999999999994          1256778888 8888311 22221   12335689999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC----CcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD----WKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~----g~lvGiVt~~dl~~~~  141 (207)
                      |++  +++++++++++.+++++|.++++  +||+|++    |+++||||.+||++.+
T Consensus       457 m~~--~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l  509 (527)
T 3pc3_A          457 LNK--RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFI  509 (527)
T ss_dssp             EET--TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHH
T ss_pred             hcC--CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHH
Confidence            999  99999999999999999977664  7999974    8999999999999875

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.93  E-value=2.7e-10  Score=102.02  Aligned_cols=89  Identities=26%  Similarity=0.227  Sum_probs=1.4

Q ss_pred             ccc-ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC---CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           86 GDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        86 ~~v-m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~---g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      .++ |++  +++++++++++.+++++|.+++++.+||+|++   |+++|+||.+|+++..                    
T Consensus        99 ~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~--------------------  156 (503)
T 1me8_A           99 FKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPIDL--------------------  156 (503)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             cccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhhh--------------------
Confidence            345 999  99999999999999999999999999999976   8999999999998520                    


Q ss_pred             hhHHHHHHHHhhhcCCcccccccCC--CeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                 .....++.++|+++  ++++++++++.+++++|.+++
T Consensus       157 -----------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~  193 (503)
T 1me8_A          157 -----------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKK  193 (503)
T ss_dssp             ------------------------------------------------
T ss_pred             -----------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcC
Confidence                       11346799999977  999999999999999998753

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.93  E-value=3.6e-10  Score=100.88  Aligned_cols=90  Identities=31%  Similarity=0.466  Sum_probs=1.1

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (207)
                      +++++|++  +++++++++++.++++.|.+++++.+||+|++++++|+||.+|+++..                      
T Consensus        96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~----------------------  151 (494)
T 1vrd_A           96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK----------------------  151 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc----------------------
Confidence            46789999  999999999999999999999999999999889999999999998521                      


Q ss_pred             HHHHHHHHhhhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558          164 FNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                ....++.++|++  +++++++++++.+++++|.+++
T Consensus       152 ----------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~  187 (494)
T 1vrd_A          152 ----------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHR  187 (494)
T ss_dssp             ----------------------------------------------
T ss_pred             ----------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcC
Confidence                      124579999998  8999999999999999998764

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.91  E-value=1.4e-10  Score=103.55  Aligned_cols=111  Identities=17%  Similarity=0.183  Sum_probs=0.4

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      .+++++++.+..+|.+.+.+++++.+.|++            ..++.+++ +..|...         ......+++++|+
T Consensus        97 ~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd------------~g~lvGIV-t~rDl~~---------~~~~~~~V~~vMt  154 (490)
T 4avf_A           97 DPVTVTPSTKIIELLQMAREYGFSGFPVVE------------QGELVGIV-TGRDLRV---------KPNAGDTVAAIMT  154 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEeCCCCcHHHHHHHHHHhCCCEEEEEE------------CCEEEEEE-EhHHhhh---------ccccCCcHHHHhc
Confidence            456999999999999999999999999994            45666777 7777311         0123457999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcc
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~  143 (207)
                      +.++++++++++++.+++++|.+++++.+||+|++|+++|+||++|+++....
T Consensus       155 p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  207 (490)
T 4avf_A          155 PKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTY  207 (490)
T ss_dssp             ----------------------------------------------------C
T ss_pred             cCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccC
Confidence            43348999999999999999999999999999999999999999999986533

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.87  E-value=2.2e-10  Score=102.22  Aligned_cols=112  Identities=21%  Similarity=0.278  Sum_probs=5.0

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      +++++.++.+..+|.+.|.+++++++.|++           ++.++.+++ |..|....         .....+++++|+
T Consensus       104 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd-----------~~~~lvGiv-t~~Dl~~~---------~~~~~~v~~im~  162 (494)
T 1vrd_A          104 DPITVTPDMTVKEAIDLMAEYKIGGLPVVD-----------EEGRLVGLL-TNRDVRFE---------KNLSKKIKDLMT  162 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEECCCCCHHHHHHHHHHcCceEEEEEc-----------CCCEEEEEE-EHHHHHhh---------cCCCCcHHHHhC
Confidence            677899999999999999999999999996           456778888 77773211         112457999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcc
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~  143 (207)
                      +.+++.++++++++.+++++|.+++++.+||+|++|+++|+||.+|+++....
T Consensus       163 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          163 PREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             ----------------------------------------------CHHHHTC
T ss_pred             CCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence            64468999999999999999999999999999999999999999999987643

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.86  E-value=6.4e-10  Score=98.96  Aligned_cols=86  Identities=24%  Similarity=0.300  Sum_probs=0.8

Q ss_pred             cccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        86 ~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      +..|..  +++++.|+.++.|++++|.+++++.+||+|+   +++++||||.+|+...                      
T Consensus       141 e~g~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~----------------------  196 (556)
T 4af0_A          141 ENGFIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ----------------------  196 (556)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCccC--CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc----------------------
Confidence            346777  8999999999999999999999999999985   5799999999998641                      


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                 ....++.++|++++++++++.+++++.++|.++
T Consensus       197 -----------d~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~  229 (556)
T 4af0_A          197 -----------DAETPIKSVMTTEVVTGSSPITLEKANSLLRET  229 (556)
T ss_dssp             --------------------------------------------
T ss_pred             -----------ccceEhhhhcccceEEecCCCCHHHHHHHHHHc
Confidence                       134689999999999999999999999999865

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.77  E-value=1.7e-09  Score=96.99  Aligned_cols=113  Identities=17%  Similarity=0.182  Sum_probs=61.4

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc---CCceeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS---SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD   87 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~---~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~   87 (207)
                      +++++.++.+..+|.+.|.+++++.+.|++           +   ..++.+++ |..|.....       ......++++
T Consensus       117 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd-----------~~~~~~~lvGiV-t~~Dl~~~~-------~~~~~~~v~~  177 (514)
T 1jcn_A          117 DPVVLSPSHTVGDVLEAKMRHGFSGIPITE-----------TGTMGSKLVGIV-TSRDIDFLA-------EKDHTTLLSE  177 (514)
T ss_dssp             SCCCCCC-----------------CEESCC-------------------CCEE-CTTTTC--------------------
T ss_pred             CCEEECCCCCHHHHHHHHHhcCCCEEEEEe-----------CCCcCCEEEEEE-EHHHHHhhh-------hccCCCCHHH
Confidence            566899999999999999999999999996           3   36677888 777731110       0123457999


Q ss_pred             cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (207)
Q Consensus        88 vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~  142 (207)
                      +|++..+++++++++++.+++++|.+++.+.+||+|++|+++|+||++|+++...
T Consensus       178 vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          178 VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             ---CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence            9986446899999999999999999999999999999999999999999998653

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.69  E-value=2.7e-08  Score=88.59  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=92.6

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      .+++++++.+..++.+.+.+++++.+.|++.         .+..++.+++ +..|....         .....+++++|+
T Consensus        99 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---------~~~~~lvGiv-t~~Dl~~~---------~~~~~~v~~im~  159 (491)
T 1zfj_A           99 DPFFLTPEHKVSEAEELMQRYRISGVPIVET---------LANRKLVGII-TNRDMRFI---------SDYNAPISEHMT  159 (491)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESC---------TTTCBEEEEE-EHHHHHHC---------SCSSSBTTTSCC
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEEe---------CCCCEEEEEE-EHHHHhhh---------ccCCCcHHHHcC
Confidence            5678899999999999999999999999841         0245677888 77773111         113457999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcc
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~  143 (207)
                      +. +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++....
T Consensus       160 ~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          160 SE-HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             CS-CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             CC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            52 47899999999999999999999999999999999999999999987643

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.68  E-value=1.1e-09  Score=98.22  Aligned_cols=92  Identities=26%  Similarity=0.388  Sum_probs=49.6

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      +++++|.+  +++++.+++++.+++++|.+++++.+||+|+   +++++|+||.+|+.....                  
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~------------------  168 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE------------------  168 (514)
T ss_dssp             TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC----------------------
T ss_pred             hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh------------------
Confidence            57789998  8999999999999999999999999999997   489999999999975310                  


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  .....++.++|++  +++++++++++.+++++|.+++
T Consensus       169 ------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~  205 (514)
T 1jcn_A          169 ------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSK  205 (514)
T ss_dssp             ------------------------CCBCCCCEETTCCSTTTTTHHHHHT
T ss_pred             ------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcC
Confidence                        0134578999998  8999999999999999998753

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.68  E-value=6.6e-09  Score=92.59  Aligned_cols=85  Identities=31%  Similarity=0.511  Sum_probs=1.0

Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhH
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTF  164 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (207)
                      .++.|..  ++.++++++++.++++.|.+++++.+||+|+ ++++|+|+.+|++. .                       
T Consensus        95 ~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~-~-----------------------  147 (486)
T 2cu0_A           95 AERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA-R-----------------------  147 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc-C-----------------------
Confidence            4568998  9999999999999999999999999999997 99999999999874 0                       


Q ss_pred             HHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558          165 NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF  206 (207)
Q Consensus       165 ~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~  206 (207)
                                ...++.++|+++++++++++++.+++++|.++
T Consensus       148 ----------~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~  179 (486)
T 2cu0_A          148 ----------EGKLVKELMTKEVITVPESIEVEEALKIMIEN  179 (486)
T ss_dssp             ------------------------------------------
T ss_pred             ----------CCCCHHHHccCCCeEECCcCcHHHHHHHHHHc
Confidence                      23578899998899999999999999999876

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.59  E-value=5.6e-09  Score=93.05  Aligned_cols=106  Identities=26%  Similarity=0.310  Sum_probs=0.0

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      ..+++++++.+..++.+.+.+++.+.+.|++           + .++.+++ +..|...           ....+++++|
T Consensus       101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd-----------~-~~lvGiv-t~~Dl~~-----------~~~~~v~~im  156 (486)
T 2cu0_A          101 EDVITIAPDETVDFALFLMEKHGIDGLPVVE-----------D-EKVVGII-TKKDIAA-----------REGKLVKELM  156 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEE-----------C-CEEEEEE-EHHHhcc-----------CCCCCHHHHc
Confidence            3567889999999999999999999998885           3 6677777 7777311           1245799999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++  +++++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++..
T Consensus       157 ~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          157 TK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             ----------------------------------------------------
T ss_pred             cC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhh
Confidence            98  899999999999999999999999999999999999999999999865

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.35  E-value=7.7e-08  Score=63.33  Aligned_cols=69  Identities=7%  Similarity=0.037  Sum_probs=53.8

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      ++++.|+.+..+|++.|.++++++++|++            +.++.|++ |++|. ..+++..+  ......+|+++|++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d------------~~~lvGIv-T~~Di-~~~~~~~~--~~~~~~~V~~iMt~   65 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME------------GDEILGVV-TERDI-LDKVVAKG--KNPKEVKVEEIMTK   65 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE------------TTEEEEEE-EHHHH-HHHTTTTT--CCGGGCBGGGTCEE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE------------CCEEEEEE-EHHHH-HHHHHhcC--CCcccCCHHHhcCC
Confidence            57999999999999999999999999994            45788888 99994 22333332  23456789999999


Q ss_pred             cCCceEE
Q 028558           92 KEELHVV   98 (207)
Q Consensus        92 ~~~~~~v   98 (207)
                        +++++
T Consensus        66 --~~iTV   70 (70)
T 3ghd_A           66 --NPVKI   70 (70)
T ss_dssp             --CTTCC
T ss_pred             --CCeEC
Confidence              77653

>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2

Probab=93.07  E-value=0.01  Score=43.53  Aligned_cols=47  Identities=11%  Similarity=0.210  Sum_probs=38.4

Q ss_pred             cccc-cCCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhhhc
Q 028558           27 TSFA-LQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANS   75 (207)
Q Consensus        27 ~~~~-~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~~~   75 (207)
                      .|++ .+++|+|+|+ |..+.+.+  .+++++++++. |+++ +.+.+.+.+.
T Consensus        68 ~a~~~~~~~~iIlt~-g~~~~~~i~~~A~~~~ipvl~-t~~~T~~~~~~l~~~  118 (139)
T 2ioj_A           68 TALEMPNVRCLILTG-NLEPVQLVLTKAEERGVPVIL-TGHDTLTAVSRLESV  118 (139)
T ss_dssp             HHTTCTTEEEEEEET-TCCCCHHHHHHHHHHTCCEEE-CSSCHHHHHHHHHTT
T ss_pred             HHHhCCCCcEEEEcC-CCCCCHHHHHHHHHCCCeEEE-ECCCHHHHHHHHHHH
Confidence            6677 7899999999 88888887  67888999999 9999 6666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-10
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	3e-05
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	8e-10
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	8e-06
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-08
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	4e-06
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	2e-08
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	7e-08
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-06
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	7e-08
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	8e-07
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	7e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-07
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	9e-08
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	6e-05
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-07
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	5e-04
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	2e-07
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	8e-05
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	4e-07
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	5e-07
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-04
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	5e-07
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-06
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	7e-05
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	3e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	0.004
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	4e-06
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	5e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	4e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-05
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-05
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	7e-05
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	1e-05
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	8e-04
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	2e-05
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	0.001
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	3e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	2e-04
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	4e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	7e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	4e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	5e-04
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	1e-04
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	2e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	5e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	6e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	8e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	0.002

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-10
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+   +  +LVG V   DL
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 63

Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 197
           +     +   +        +  T  +               + +++  +P  V + T +E
Sbjct: 64  IISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLK---LRNILDLSPFTVTDLTPME 120

Query: 198 DAAR 201
               
Sbjct: 121 IVVD 124

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + +        V   T ++  ++I  +  +    V  +  +L+G+++  D+L
Sbjct: 101 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 152

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 8e-10
 Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 13/119 (10%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-VIDDDWKLVGLVSDYDLLALDS 142
              D + T  +L V   +  V +A   LV   +   P         VG+++  D + +  
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILH 73

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                        E                     +         V +    +L DA  
Sbjct: 74  RYYKSALVQIYELEEHKIETWRE------------VYLQDSFKPLVCISPNASLFDAVS 120

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.1 bits (98), Expect = 8e-06
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 51  TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110
           T +D ++ L R                  +                 + P  ++ +A+  
Sbjct: 64  TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL--VCISPNASLFDAVSS 121

Query: 111 LVEKRITGFPVIDDDW-KLVGLVSDYDLL 138
           L+  +I   PVID +    + +++   +L
Sbjct: 122 LIRNKIHRLPVIDPESGNTLYILTHKRIL 150

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + DLL    I
Sbjct: 5   EIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNE---VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAA 200
               ++        +      +     +K   +   K V ++MT   +V      + + A
Sbjct: 63  VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVA 122

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT      V  P  TV E    + +  I   PVI  +  L+GL+ D+DLL
Sbjct: 100 PVAEIMTRDV--IVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 48.6 bits (115), Expect = 2e-08
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 76  AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135
                    + + MT +E+L V     T+ EA EIL   +    P+++++ +LV +++  
Sbjct: 54  LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIART 113

Query: 136 DLL 138
           DL 
Sbjct: 114 DLK 116

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (112), Expect = 7e-08
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 21/120 (17%)

Query: 83  YTVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
             +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L 
Sbjct: 6   IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI 65

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                     S+   +                                  +   L     
Sbjct: 66  KGGIYNDLSLSVGEALMRRSD--------------------DFEGVYTCTKNDKLSTIMD 105

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 10/43 (23%), Positives = 23/43 (53%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 92  YTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.7 bits (112), Expect = 7e-08
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 15/120 (12%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           V  V   ++ K    VV+  T ++E ++ ++E  +T    +  D KLVG++    LL   
Sbjct: 3   VKDVCKLISLK--PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL--- 57

Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                                    ++  + +   K   ++M   PV V   T LE+A +
Sbjct: 58  ---------KVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALK 107

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.6 bits (104), Expect = 8e-07
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              + M    +   V   T ++EAL+++++  I   PV+D+  ++VG ++  ++L
Sbjct: 85  NASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 7e-08
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                       +       T++  +  LVE  +    V+D+   + G+VS  D+L
Sbjct: 84  LQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 137

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 21/119 (17%)

Query: 84  TVGDFM-TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           ++ +    T   + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L +
Sbjct: 10  SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 69

Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                  D S+                    T             +       LE    
Sbjct: 70  EKTYNNLDVSV--------------------TKALQHRSHYFEGVLKCYLHETLEAIIN 108

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 47.2 bits (111), Expect = 9e-08
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLL
Sbjct: 3   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 55

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 39.5 bits (91), Expect = 6e-05
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V P   + E+   + + +I   PV+  D  LVG+++D D +
Sbjct: 86  TSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFV 127

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.0 bits (108), Expect = 2e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D+
Sbjct: 2   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDI 53

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.4 bits (83), Expect = 5e-04
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + V    ++ E L ++ E ++   PVI +  +LVG+V++ D+ 
Sbjct: 78  YYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 119

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 46.6 bits (109), Expect = 2e-07
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 2/118 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            VGD M    ++  +  T+T  + L +L + ++  FP +D       L S         +
Sbjct: 12  QVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLL 69

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
                A      E   T +     ++             +  +P  + E T+L+    
Sbjct: 70  QRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHT 127

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 39.2 bits (90), Expect = 8e-05
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               +    +   T++ +   +     +    V     KLVG+V+  ++ 
Sbjct: 107 CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMG-KLVGVVALAEIQ 155

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 45.1 bits (106), Expect = 4e-07
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV   +  K   +  + P  +V  A++ +    I    V+ D+   VG++++ D  
Sbjct: 3   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL-VGILTERDFS 57

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V    T ++ + ++ E R+   PV+DD  K++GL+S  DL+
Sbjct: 81  AYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 122

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +  +MT   +L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D++
Sbjct: 6   PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDII 58

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                 T + E L  + E RI    + ++  K+VG+ +  DLL
Sbjct: 81  ITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 122

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.0 bits (105), Expect = 5e-07
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    ++
Sbjct: 3   TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM 57

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 20/123 (16%), Positives = 33/123 (26%), Gaps = 7/123 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T  D + T   L V   T  V  +L +L    I   P+ D +        +     L   
Sbjct: 21  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMA 73

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSS 203
                                 +  +LL     +     + P  + V    +L DA  + 
Sbjct: 74  DFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAM 133

Query: 204 HSF 206
              
Sbjct: 134 SKS 136

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLL 138
                E   V P  ++ +A   + + R    P+ID D       +V +++ Y +L
Sbjct: 111 GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL 165

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130
           ++ V  FM+T  ++  +     +D+A+++++ +     PVIDDD K+VG
Sbjct: 1   IFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVG 47

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T      +    +V+ A   ++ KRI    +++ D  + G++++ DLL
Sbjct: 74  VVKDVMVTNL--VTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 126

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.2 bits (98), Expect = 4e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           F         V     +  AL + +E +    PV+D++ +L G VS +D L
Sbjct: 63  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL 113

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.2 bits (98), Expect = 5e-06
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSD 134
           V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+ 
Sbjct: 3   VKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNK 50

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.6 bits (99), Expect = 4e-06
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+ 
Sbjct: 4   RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSER 53

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 84  SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 122

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           V D M T  ++  +  T ++++ L   VE       V+ +  ++
Sbjct: 2   VEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV 43

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.7 bits (89), Expect = 7e-05
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + P  T+ EA E +V+  +    V +DD +++G++S  D+L
Sbjct: 75  VTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 116

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 79  RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 129

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.5 bits (83), Expect = 8e-04
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 21/124 (16%)

Query: 85  VGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           +      T   L      T V + +++L EK I+  P+++ +  L+ +    D++ L   
Sbjct: 3   LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD 62

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSS 203
                 D S+   +                                 R T  L+    + 
Sbjct: 63  GDYSNLDLSVGEALLKRPA--------------------NFDGVHTCRATDRLDGIFDAI 102

Query: 204 HSFF 207
               
Sbjct: 103 KHSR 106

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + D +     +  V      ++  + + +      PV D D  L+G+V+  D++
Sbjct: 67  IADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDII 118

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 19/113 (16%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
           T G  MTT  E   +    TV  A+ +L  +      I    V+D +  LVG++S  DL+
Sbjct: 2   TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI 59

Query: 139 ALDSISGSGRADNSMFPEV--DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV 189
             D  +      + +   V          +V + +   +   V       PV 
Sbjct: 60  VNDDDT---LIADILNERVISVHVGDDQEDVAQTIRDYDFLAV-------PVT 102

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + VVK   T+ +A ++++E       V+D   K VG+++  D++
Sbjct: 70  VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           V   MT       +    T + ALE+  + ++  FPV++ + 
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEG 42

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            + D+MT       V  T+    A+ I+V +     PV+D + K VG+V++ + L L
Sbjct: 75  PIIDYMTPNP--VTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL 129

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 39.2 bits (90), Expect = 7e-05
 Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 21/109 (19%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +   M       ++     +  A + + E  I    V ++  +                
Sbjct: 2   NIETLMIKN--PPILSKEDRLGSAFKKINEGGIGRIIVANEKIE---------------- 43

Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRE 192
              G            ++   +  Q  L   +   + D MTP PV V  
Sbjct: 44  ---GLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYN 89

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 39.9 bits (92), Expect = 4e-05
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
            V ++M T  ++  V     +++  +++ EK I    V+D + 
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK 45

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 36.4 bits (83), Expect = 5e-04
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSI 143
            ++ +  I   PV+DD   L G++S  D+  A+D +
Sbjct: 91  ALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMF 154
            + P   V EA E++   RI+G P+++     KLVG++++ D+  +   +       +  
Sbjct: 9   FLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSE 68

Query: 155 PEVDSTW-KTFNEVQKLLSKTNGKMV 179
             V +         +++L +   + +
Sbjct: 69  HLVTAAVGTDLETAERILHEHRIEKL 94

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              T ++ A  IL E RI   P++D+  +L GL++  D+ 
Sbjct: 74  AVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE 113

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V  T  V  A E +    I    V++ + +LVG++S  DL 
Sbjct: 77  ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 119

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 4/49 (8%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVG 130
              + +        +  T T+ E    L + R+    +    +  + V 
Sbjct: 2   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVA 48

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 36.3 bits (83), Expect = 8e-04
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYD 136
             G  MT   E   V+   TV+E L  L         I    V+D+  +L G++S  D
Sbjct: 2   EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRD 57

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + M  K     V+  T  +E   ++ +   T  PV+D++ +LVG+V+  D+L
Sbjct: 69  EIMNPKV--VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.62
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.61
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.6
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.6
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.6
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.59
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.59
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.58
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.57
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.57
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.56
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.56
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.55
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.54
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.54
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.54
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.54
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.54
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.54
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.54
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.53
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.52
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.51
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.51
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.48
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.47
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.47
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.47
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.47
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.46
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.45
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.44
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.42
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.42
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.42
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.39
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.38
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.36
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.36
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.35
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.33
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.33
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.31
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.29
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.28
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.27
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.23
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.22
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.22
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.18
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.16
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.11
d2ioja1	120	Hypothetical protein AF1212 {Archaeoglobus fulgidu	90.86
d1ko7a1	129	HPr kinase/phoshatase HprK N-terminal domain {Stap	84.67
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	82.26

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=1.7e-15  Score=110.72  Aligned_cols=96  Identities=26%  Similarity=0.343  Sum_probs=84.6

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      .+|+++|++  +++++++++++.+|++.|.+++++++||+|++|+++|+||.+|+++.....+                 
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~-----------------   65 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPG-----------------   65 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC-----------------
T ss_pred             CcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhcc-----------------
Confidence            379999999  9999999999999999999999999999999999999999999987542111                 


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                .....++.++|.++++++++++++.+++++|.+++
T Consensus        66 ----------~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~  100 (132)
T d2yzia1          66 ----------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHR  100 (132)
T ss_dssp             ----------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHT
T ss_pred             ----------CccceeEeecccccccccCcchHHHHHHHHHHHcC
Confidence                      11346799999999999999999999999998864

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=3.1e-16  Score=113.26  Aligned_cols=96  Identities=21%  Similarity=0.319  Sum_probs=82.6

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (207)
                      +++++|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.....+.                 
T Consensus         2 t~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~-----------------   62 (123)
T d1y5ha3           2 TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL-----------------   62 (123)
T ss_dssp             CHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC-----------------
T ss_pred             CHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCC-----------------
Confidence            68999999  99999999999999999999999999999988999999999999764321111                 


Q ss_pred             HHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                               ......+.++|+++++++++++++.+++++|.+++
T Consensus        63 ---------~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~   97 (123)
T d1y5ha3          63 ---------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQ   97 (123)
T ss_dssp             ---------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHT
T ss_pred             ---------CcccceEEEEeeccceeeeecchHHHHHHHHHHcC
Confidence                     11345678999999999999999999999998764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.60  E-value=2e-15  Score=111.67  Aligned_cols=97  Identities=23%  Similarity=0.222  Sum_probs=84.5

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++|+++|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.....+.                
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~----------------   64 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK----------------   64 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC----------------
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcc----------------
Confidence            579999999  99999999999999999999999999999989999999999999875422111                


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                .....+++++|+++++++++++++.+++++|.+++
T Consensus        65 ----------~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~   99 (142)
T d1pvma4          65 ----------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENG   99 (142)
T ss_dssp             ----------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHT
T ss_pred             ----------cccccccccccccccccccchhhHHHHHHHHHHcC
Confidence                      12345789999999999999999999999998764

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.60  E-value=5.2e-16  Score=113.31  Aligned_cols=103  Identities=18%  Similarity=0.209  Sum_probs=86.8

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      .+|+++|.|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.......            ..+ 
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~------------~~~-   68 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER------------IEF-   68 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS------------BCG-
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccc------------ccc-
Confidence            4789999887789999999999999999999999999999988999999999999987532111            000 


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                               ......++.++|+++++++++++++.+++++|.+++
T Consensus        69 ---------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~  104 (132)
T d1yava3          69 ---------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG  104 (132)
T ss_dssp             ---------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS
T ss_pred             ---------cccccccccccccccccccccchhHHHHHHHHHhCC
Confidence                     113456889999999999999999999999998753

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.60  E-value=1.1e-15  Score=112.62  Aligned_cols=104  Identities=25%  Similarity=0.258  Sum_probs=84.9

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++|+++|++  +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.........              
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~--------------   65 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRS--------------   65 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC----------------
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhh--------------
Confidence            479999999  9999999999999999999999999999999999999999999987642211000              


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                        .   .........++.++|+++++++++++++.+++++|.+++
T Consensus        66 --~---~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  105 (139)
T d2o16a3          66 --A---QGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHK  105 (139)
T ss_dssp             ------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTT
T ss_pred             --h---cccccccccchhHhhccccccccccchHHHHHHHHHHcC
Confidence              0   000012456899999999999999999999999998874

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=6.7e-16  Score=111.48  Aligned_cols=113  Identities=17%  Similarity=0.265  Sum_probs=96.5

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      .+++++.++.+..+|.+.|.++++++++|++           ++.++.|++ |..|.. .+.+...  .......++++|
T Consensus         9 ~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd-----------~~~~~~Gii-t~~Di~-~~~~~~~--~~~~~~~v~~im   73 (123)
T d1y5ha3           9 AGVTCVGEHETLTAAAQYMREHDIGALPICG-----------DDDRLHGML-TDRDIV-IKGLAAG--LDPNTATAGELA   73 (123)
T ss_dssp             ETCCCEETTSBHHHHHHHHHHHTCSEEEEEC-----------GGGBEEEEE-EHHHHH-HTTGGGT--CCTTTSBHHHHH
T ss_pred             CCCcEECCcCcHHHHHHHHHHcCCCceEEEe-----------ccchhhhhh-hhhhHh-hhhhhcC--CCcccceEEEEe
Confidence            4678999999999999999999999999997           667788888 888831 2233332  234556789999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      ++  ++.++++++++.++++.|.+++++++||+| +|+++|+||.+||++.
T Consensus        74 ~~--~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          74 RD--SIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             TT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             ec--cceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence            99  999999999999999999999999999999 5899999999999985

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=2.2e-15  Score=112.60  Aligned_cols=123  Identities=20%  Similarity=0.279  Sum_probs=86.2

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      +++|+++|++  +++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++............ ........|
T Consensus         3 ~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~-~~~~~~~~~   79 (156)
T d2yzqa1           3 GVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE-LAASSEEEW   79 (156)
T ss_dssp             GCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------
T ss_pred             CCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccc-cccchhhhh
Confidence            5689999999  9999999999999999999999999999999999999999999987543322211110 000000111


Q ss_pred             hhHH----HHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFN----EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~----~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....    .+..........++.++|++++.++.+++++.+++++|.++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~  129 (156)
T d2yzqa1          80 ILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYS  129 (156)
T ss_dssp             -----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHT
T ss_pred             hhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcC
Confidence            0000    111111123567899999999999999999999999998865

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=4.9e-15  Score=106.58  Aligned_cols=90  Identities=23%  Similarity=0.248  Sum_probs=82.4

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++|+++|++  +++++.+++++.+|+++|.+++++++||+|++|+++|+++.+|++++.                     
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~---------------------   57 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD---------------------   57 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC---------------------
T ss_pred             CCchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhh---------------------
Confidence            468999999  999999999999999999999999999999899999999999998642                     


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  ...++.++|..+++++++++++.+++++|.+++
T Consensus        58 ------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~   90 (121)
T d1vr9a3          58 ------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQ   90 (121)
T ss_dssp             ------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCC
T ss_pred             ------------ccccccccccCccEEECCCCCHHHHHHHHHhcC
Confidence                        346799999999999999999999999998763

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.57  E-value=1.4e-15  Score=110.44  Aligned_cols=112  Identities=20%  Similarity=0.257  Sum_probs=94.7

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      -.+++++|+.+..+|.+.|.++++++++|+.            ++++.|++ |..|... +....  .......+++++|
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~------------~~~~vGii-t~~Di~~-~~~~~--~~~~~~~~v~~im   76 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK------------DEKLVGIL-TERDFSR-KSYLL--DKPVKDTQVKEIM   76 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE------------TTEEEEEE-EHHHHHH-HGGGS--SSCGGGSBGGGTS
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE------------CCeEEEEE-Eccchhh-hhhhh--cccccceeEeeec
Confidence            4688999999999999999999999999984            45677888 8877312 22222  2234556899999


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      ++  ++.++.+++++.++++.|.+++++++||+| +|+++|+||.+|++++
T Consensus        77 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          77 TR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             BC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             cc--eeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHH
Confidence            99  999999999999999999999999999998 6899999999999985

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.57  E-value=2.5e-15  Score=111.18  Aligned_cols=114  Identities=16%  Similarity=0.118  Sum_probs=97.3

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      .+++++++.+..+|.+.|.++++++++|++           ++.++.|++ |..|.. .+.+..  .......+++++|+
T Consensus        12 ~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d-----------~~~~~~Gii-t~~di~-~~~~~~--~~~~~~~~v~~im~   76 (142)
T d1pvma4          12 NFKTVNWNTTVFDAVKIMNENHLYGLVVKD-----------DNGNDVGLL-SERSII-KRFIPR--NKKPDEVPIRLVMR   76 (142)
T ss_dssp             TCCEEETTCBHHHHHHHHHHHTCCEEEEEC-----------TTSCEEEEE-EHHHHH-HHTGGG--CCCGGGSBGGGTSB
T ss_pred             CCcEECCcCcHHHHHHHHHHCCCceEeeec-----------cCCcccceE-Eeechh-hhhhhh--cccccccccccccc
Confidence            467999999999999999999999999997           667788888 777731 122222  22345668999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +  +++++.+++++.++++.|.+++.+++||+|++|+++|+||..||++.+
T Consensus        77 ~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          77 K--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             S--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             c--ccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence            9  999999999999999999999999999999999999999999999854

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=7.3e-15  Score=105.86  Aligned_cols=107  Identities=13%  Similarity=0.160  Sum_probs=77.2

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      .+++++++.+..+|.+.+.++++++++|++           +.+++.|++ +..|...          ......++++|.
T Consensus        10 ~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd-----------~~~~~~G~i-t~~dl~~----------~~~~~~~~~~~~   67 (122)
T d2yzqa2          10 NPVTITLPATRNYALELFKKYKVRSFPVVN-----------KEGKLVGII-SVKRILV----------NPDEEQLAMLVK   67 (122)
T ss_dssp             SCCCEESSCC------------CCEEEEEC-----------TTCCEEEEE-ESSCC--------------------CCCB
T ss_pred             CCEEECCcCcHHHHHHHHHHcCCcEEEEEe-----------ccccchhhh-hcchhhh----------hhcccchhhccc
Confidence            567999999999999999999999999997           667788888 7777311          122346899999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +  +++++++++++.++++.|.+++++++||+|++|+++|+||.+|++++.
T Consensus        68 ~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          68 R--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             S--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             c--ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            9  999999999999999999999999999999999999999999999753

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.56  E-value=4.3e-15  Score=106.73  Aligned_cols=94  Identities=20%  Similarity=0.261  Sum_probs=82.0

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (207)
                      +|+++|++  ++.++++++|+.+|++.|.+++++++||++ +|+++|+||.+||++.+....                  
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~------------------   59 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD------------------   59 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC------------------
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccccc------------------
Confidence            37899999  999999999999999999999999999998 589999999999998642111                  


Q ss_pred             HHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                               .....++.++|+++++++++++++.+++++|.+++
T Consensus        60 ---------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~   94 (120)
T d1pbja3          60 ---------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNV   94 (120)
T ss_dssp             ---------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHT
T ss_pred             ---------cccceeEeeecccccccccchhHHHHHHHHHHHcC
Confidence                     12356799999999999999999999999998864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=1.4e-15  Score=109.78  Aligned_cols=90  Identities=26%  Similarity=0.358  Sum_probs=64.3

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++|+++|++  +++++++++++.+|++.|.+++++++||+|++|+++|+||.+|++...                     
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~---------------------   57 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP---------------------   57 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------------------------
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhh---------------------
Confidence            468999999  999999999999999999999999999999999999999999998631                     


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                  ....+.++|.++++++++++++.+++++|.+++
T Consensus        58 ------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~   90 (122)
T d2yzqa2          58 ------------DEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYD   90 (122)
T ss_dssp             ------------------CCCBSCCCEEETTSBHHHHHHHHHHHT
T ss_pred             ------------cccchhhccccceeecchhhHHHHHHHHHHHcC
Confidence                        345788999999999999999999999998764

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=5.8e-15  Score=107.74  Aligned_cols=114  Identities=17%  Similarity=0.220  Sum_probs=96.7

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      +.++++++++.+..+|.+.|.++|+++++|++           +++.+.|++ |..|... .+...   ......+++++
T Consensus        12 ~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd-----------~~~~~~Gii-t~~di~~-~~~~~---~~~~~~~v~~i   75 (132)
T d2yzia1          12 TKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN-----------DDGNVVGFF-TKSDIIR-RVIVP---GLPYDIPVERI   75 (132)
T ss_dssp             BCCCCEECTTSBHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHHH-HTTTT---CCCTTSBGGGT
T ss_pred             CCCCeEECCcCcHHHHHHHHHHcCCcEEEEec-----------ccceeeeee-eHHHHHH-HHhhc---cCccceeEeec
Confidence            35789999999999999999999999999997           667788888 8777321 22222   22345689999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |.+  ++.++.+++++.++++.|.+++++++||++ +|+++|+||.+|+++++
T Consensus        76 m~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~  125 (132)
T d2yzia1          76 MTR--NLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEAS  125 (132)
T ss_dssp             CBC--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccc--cccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            999  999999999999999999999999999876 68999999999999864

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.54  E-value=2e-15  Score=108.64  Aligned_cols=113  Identities=20%  Similarity=0.219  Sum_probs=58.7

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      ++++.|+.+..+|.+.|.+++++++.|++.+        ...+++.|++ |.+|...  ...     ......+..+|+.
T Consensus         6 pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~--------~~~~~lvGiv-T~~Di~~--~~~-----~~~~~~~~~~~~~   69 (120)
T d1jr1a4           6 PVVLSPKDRVRDVFEAKARHGFCGIPITDTG--------RMGSRLVGII-SSRDIDF--LKE-----EEHDRFLEEIMTK   69 (120)
T ss_dssp             TCC----CCCC--CCBC-----------------------CTTCCC------------------------------CCSB
T ss_pred             CEEECCcCCHHHHHHHHHHhCCCeEEEeecc--------ccCCeEeeee-eeeeeee--hhc-----cccCceeEEEEee
Confidence            4699999999999999999999999998511        0245677888 7777311  111     1122356667655


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      ..+++++++++++.+|+++|.+++++++||+|++|+++|+||.+|+++.
T Consensus        70 ~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          70 REDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             TTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             ccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            4478999999999999999999999999999999999999999999974

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=4.9e-15  Score=109.86  Aligned_cols=108  Identities=18%  Similarity=0.210  Sum_probs=91.5

Q ss_pred             cccccccCCCCCCcccccccccC-----CCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQ-----LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT   84 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~-----v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~   84 (207)
                      .++++++++.+..+|.+.+.+++     +..+.|++           +..++.+++ +..|.      ..    .....+
T Consensus         9 ~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd-----------~~~~l~G~v-~~~dl------~~----~~~~~~   66 (144)
T d2yvxa2           9 PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD-----------EKGRLKGVL-SLRDL------IV----ADPRTR   66 (144)
T ss_dssp             SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBC-----------TTCBBCCBC-BHHHH------TT----SCTTCB
T ss_pred             CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEec-----------CCCCEeccc-chhhh------hh----cccccc
Confidence            57889999999999999998875     67777886           666777777 66662      11    123457


Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +.++|++  ++.++++++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        67 v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l  121 (144)
T d2yvxa2          67 VAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  121 (144)
T ss_dssp             STTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHH
T ss_pred             hHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHH
Confidence            8999999  999999999999999999999999999999999999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=7.5e-15  Score=109.61  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=91.5

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhh-h-----------------
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASG-T-----------------   70 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~-~-----------------   70 (207)
                      +-++++++++.+..+|.+.|.+++++++.|++           +++++.|++ |..|.... .                 
T Consensus        11 ~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd-----------~~~~lvG~i-t~~Dl~~~~~~~~~~~~~~~~~~~~~~   78 (156)
T d2yzqa1          11 QRYVSIVWEGTPLKAALKALLLSNSMALPVVD-----------SEGNLVGIV-DETDLLRDSEIVRIMKSTELAASSEEE   78 (156)
T ss_dssp             BSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC-----------TTSCEEEEE-EGGGGGGCGGGCC--------------
T ss_pred             cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe-----------CCCCceeEE-eeeechhhhcccccccccccccchhhh
Confidence            45789999999999999999999999999997           344455555 44441100 0                 


Q ss_pred             --------hhhhccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           71 --------LTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        71 --------~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                              .............+++++|++  ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          79 WILESHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             ------------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhhhhHHHhhhcccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence                    000111122445689999999  99999999999999999999999999999999999999999999985

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.54  E-value=1.6e-14  Score=104.65  Aligned_cols=95  Identities=21%  Similarity=0.332  Sum_probs=83.1

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW  161 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
                      +..|+++|++  +++++++++++.+|.++|.+++++.+||+| +|+++|+||.+|+++.....                 
T Consensus         3 ~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~-----------------   62 (127)
T d2ef7a1           3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG-----------------   62 (127)
T ss_dssp             CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT-----------------
T ss_pred             ccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhh-----------------
Confidence            4579999999  999999999999999999999999999998 58999999999999864211                 


Q ss_pred             hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                 .....++.++|.++++++++++++.+++++|.+++
T Consensus        63 -----------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~   97 (127)
T d2ef7a1          63 -----------KSLETKAEEFMTASLITIREDSPITGALALMRQFN   97 (127)
T ss_dssp             -----------CCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHT
T ss_pred             -----------ccccchhhhhhhhhccccccccchhHHHHHHHHcC
Confidence                       12356789999999999999999999999998764

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.54  E-value=1.2e-14  Score=105.17  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=89.1

Q ss_pred             cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558           12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (207)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~   91 (207)
                      ++++.|+.+..+|.+.|.+++++++.|++         ...++++.|++ |..|...      ..  .........+|+.
T Consensus         7 pvtv~~~~tv~~a~~~m~~~~~~~~pVvD---------~~~~~~lvGiv-t~~Di~~------~~--~~~~~~~~~~~~~   68 (126)
T d1zfja4           7 PFFLTPEHKVSEAEELMQRYRISGVPIVE---------TLANRKLVGII-TNRDMRF------IS--DYNAPISEHMTSE   68 (126)
T ss_dssp             CCCBCSSSBHHHHHHHHHHTTCSEEEEES---------CTTTCBEEEEE-EHHHHHH------CS--CSSSBTTTSCCCS
T ss_pred             ceEECCCCCHHHHHHHHHHhCCCcEEEEe---------eccCCeEEEEe-EHHHHHH------hh--ccCCceeeeeecc
Confidence            35999999999999999999999999996         11256688888 7777311      11  1112223445566


Q ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558           92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (207)
Q Consensus        92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~  142 (207)
                        +++++++++++.+++++|.+++++++||+|++|+++|+||.+|++++..
T Consensus        69 --~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          69 --HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             --CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             --ceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence              7899999999999999999999999999999999999999999998753

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.54  E-value=4.4e-15  Score=107.86  Aligned_cols=109  Identities=12%  Similarity=0.139  Sum_probs=90.1

Q ss_pred             ccccccccCCCCCCccccccccc-----CCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcc
Q 028558            9 SISVARLRAPPAGRTSGRTSFAL-----QLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVY   83 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~-----~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~   83 (207)
                      +..+++++++.+..+|.+.+.++     ++..+.|++           ++.++.+++ +-.+.      .    ......
T Consensus         8 ~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd-----------~~~~l~G~v-~~~~l------~----~~~~~~   65 (127)
T d2ouxa2           8 TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD-----------QENHLVGVI-SLRDL------I----VNDDDT   65 (127)
T ss_dssp             BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEEC-----------TTCBEEEEE-EHHHH------T----TSCTTS
T ss_pred             CCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEe-----------cCCeEEEEE-Eeecc------c----cccccE
Confidence            34678999999999999998666     478888886           566666776 43331      1    112345


Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +++++|++  +++++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        66 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          66 LIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             BHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             EhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            79999999  999999999999999999999999999999899999999999999753

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.53  E-value=6e-15  Score=105.96  Aligned_cols=112  Identities=16%  Similarity=0.165  Sum_probs=95.2

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      +.++++++++.+..+|.+.+.++++++++|.+            ++++.|++ |..|..  +.+..  +......+++++
T Consensus         7 ~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~------------~~~~~Gvi-t~~Di~--~~l~~--~~~~~~~~v~~~   69 (120)
T d1pbja3           7 VTDVDTIDITASLEDVLRNYVENAKGSSVVVK------------EGVRVGIV-TTWDVL--EAIAE--GDDLAEVKVWEV   69 (120)
T ss_dssp             BCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE------------TTEEEEEE-EHHHHH--HHHHH--TCCTTTSBHHHH
T ss_pred             CCCCeEECCcCcHHHHHHHHHHcCceEEEEEe------------CCcEEEEE-Eeeecc--ccccc--cccccceeEeee
Confidence            35788999999999999999999999999984            46777888 888831  22222  234556789999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      |++  ++.++++++++.+|++.|.+++.+++||++ +|+++|+||.+|++++
T Consensus        70 m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          70 MER--DLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             CBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             ccc--ccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence            999  999999999999999999999999999987 6899999999999985

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.52  E-value=6.7e-15  Score=106.66  Aligned_cols=113  Identities=15%  Similarity=0.213  Sum_probs=95.8

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v   88 (207)
                      +.++++++++.+..+|.+.+.++++++++|++            ++++.|++ +..|..  +.+..+   .....+++++
T Consensus        11 ~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d------------~~~~~Giv-t~~dl~--~~~~~~---~~~~~~v~~~   72 (127)
T d2ef7a1          11 KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD------------GNKPVGII-TERDIV--KAIGKG---KSLETKAEEF   72 (127)
T ss_dssp             BCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE------------TTEEEEEE-EHHHHH--HHHHTT---CCTTCBGGGT
T ss_pred             CCCCeEECCcCcHHHHHHHHHHcCCceEEeec------------ccchhhhc-chhHHH--HHHHhh---ccccchhhhh
Confidence            35788999999999999999999999999994            45677888 777731  222222   2334689999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |.+  ++.++++++++.++++.|.+++.+++||+|++|+++|+||..||++++
T Consensus        73 ~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i  123 (127)
T d2ef7a1          73 MTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAI  123 (127)
T ss_dssp             SEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             hhh--hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            999  999999999999999999999999999999999999999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.51  E-value=1.4e-14  Score=105.16  Aligned_cols=89  Identities=27%  Similarity=0.394  Sum_probs=80.7

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHc-----CCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~-----~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      +++.+|++  +++++++++++.+|++.|+++     +++++||+|++|+++|+++.+++...                  
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~------------------   61 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------------------   61 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS------------------
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc------------------
Confidence            58899999  999999999999999999877     47899999999999999999999863                  


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                     ....++.++|+++++++.+++++.+++++|.+++
T Consensus        62 ---------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~   95 (127)
T d2ouxa2          62 ---------------DDDTLIADILNERVISVHVGDDQEDVAQTIRDYD   95 (127)
T ss_dssp             ---------------CTTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHT
T ss_pred             ---------------cccEEhhhhccCCCccCCCCCCHHHHHHHHHHhC
Confidence                           1456899999999999999999999999998864

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.51  E-value=2.5e-14  Score=103.61  Aligned_cols=97  Identities=21%  Similarity=0.273  Sum_probs=81.8

Q ss_pred             ccccccccc-CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        84 ~v~~vm~~~-~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      +|+++|+.. ++++++++++++.+|++.|.+++++++||++ +|+++|++|.+|+++.....+.                
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~----------------   65 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK----------------   65 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS----------------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcc----------------
Confidence            688999742 3799999999999999999999999999998 6899999999999875422111                


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                .....++.++|+++++++++++++.+++++|.+++
T Consensus        66 ----------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  100 (127)
T d2rc3a1          66 ----------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMR  100 (127)
T ss_dssp             ----------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHT
T ss_pred             ----------cccceeEeeeccceeEEeccCccHHHHHHHHHHCC
Confidence                      12346799999999999999999999999998764

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.48  E-value=9.3e-15  Score=107.30  Aligned_cols=117  Identities=16%  Similarity=0.152  Sum_probs=94.5

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhh--hccCCCCCccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTA--NSAAPSSGVYTVGDF   88 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~--~~~~~~~~~~~v~~v   88 (207)
                      .+++++++.+..+|.+.|.+++++++.|.+           ..+...+++ +..|........  ..........+++++
T Consensus        11 ~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~-----------~~~~~~g~i-~~~di~~~~~~~~~~~~~~~~~~~~v~~i   78 (141)
T d3ddja1          11 KVQTIYKEVRLDQAVKLMLRRGFRRLPVID-----------DDNKVVGIV-TVVNAIKQLAKAVDKLDPDYFYGKVVKDV   78 (141)
T ss_dssp             SCCCEETTSBHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHHHHHHHHHHHTCTHHHHTCBHHHH
T ss_pred             CCeEEcCcCcHHHHHHHHHHcCCCeeeccc-----------ccCcccccc-ccccchhhhhccccccccccccCCCHHHH
Confidence            578999999999999999999999999997           566677777 766621111111  100011234579999


Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      |++  +++++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        79 m~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l  129 (141)
T d3ddja1          79 MVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIAL  129 (141)
T ss_dssp             SBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             hCc--ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHH
Confidence            999  999999999999999999999999999999999999999999999864

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.47  E-value=2.9e-14  Score=104.81  Aligned_cols=114  Identities=16%  Similarity=0.204  Sum_probs=93.9

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhc------cCCCCCccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANS------AAPSSGVYT   84 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~------~~~~~~~~~   84 (207)
                      +++++.++.+..+|.+.|.++++++++|++           +++.+.|++ |..|..  +.+...      ........+
T Consensus        11 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd-----------~~~~~~Gii-t~~dl~--~~~~~~~~~~~~~~~~~~~~~   76 (139)
T d2o16a3          11 HPHTLLRTHTLNDAKHLMEALDIRHVPIVD-----------ANKKLLGIV-SQRDLL--AAQESSLQRSAQGDSLAFETP   76 (139)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-----------TTCBEEEEE-EHHHHH--HHHHHHCC---------CCCB
T ss_pred             CCeEECCcCCHHHHHHHHHHcCCCeeeeec-----------ccccccccc-cHHHHH--HHHHhhhhhhhcccccccccc
Confidence            677999999999999999999999999997           667788888 888721  111111      112234568


Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++++|++  ++.++++++++.+++++|.+++++++||+| +|+++|+||.+|++++.
T Consensus        77 v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~  130 (139)
T d2o16a3          77 LFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIA  130 (139)
T ss_dssp             HHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHH
T ss_pred             hhHhhcc--ccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            9999999  999999999999999999999999999999 58999999999999864

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=1.4e-14  Score=107.34  Aligned_cols=89  Identities=33%  Similarity=0.425  Sum_probs=80.5

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcC-----CCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~-----~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      +++++|++  +++++++++|+.+|++.|.+++     +..+||+|++|+++|+++.+|+....                 
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~-----------------   62 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD-----------------   62 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSC-----------------
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcc-----------------
Confidence            58899999  9999999999999999998764     78899999999999999999998631                 


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                      ...++.++|+++++++.+++++.+|+++|.+++
T Consensus        63 ----------------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~   95 (144)
T d2yvxa2          63 ----------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYD   95 (144)
T ss_dssp             ----------------TTCBSTTTSBSSCCCEESSCCHHHHHHHHHHSC
T ss_pred             ----------------cccchHHhcccCCccCCCCChHHHHHHHHHHcC
Confidence                            356789999999999999999999999999874

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=8.1e-14  Score=100.04  Aligned_cols=107  Identities=15%  Similarity=0.121  Sum_probs=93.3

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT   90 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~   90 (207)
                      .+.++.++.+..+|.+.|.+++.++++|++           +.+++.|++ +..|...          .....++.++|+
T Consensus        10 ~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd-----------~~~~~~Gii-~~~dl~~----------~~~~~~v~~~~~   67 (121)
T d1vr9a3          10 DFPMVEESATVRECLHRMRQYQTNECIVKD-----------REGHFRGVV-NKEDLLD----------LDLDSSVFNKVS   67 (121)
T ss_dssp             CSCEEETTCBHHHHHHHHHHTTSSEEEEEC-----------TTSBEEEEE-EGGGGTT----------SCTTSBSGGGCB
T ss_pred             CCeEECCCCCHHHHHHhhhhcCcEEEEEEe-----------CCceeEEEe-ehhhhhh----------hhcccccccccc
Confidence            456789999999999999999999999997           677788888 7777311          122347999999


Q ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .  ++.++++++++.++++.|.+++...+||+|++|+++|+||..|+++++
T Consensus        68 ~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l  116 (121)
T d1vr9a3          68 L--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEAL  116 (121)
T ss_dssp             C--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             C--ccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHH
Confidence            9  899999999999999999999999999999999999999999999864

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.47  E-value=3.4e-14  Score=104.17  Aligned_cols=102  Identities=25%  Similarity=0.347  Sum_probs=84.9

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++|+++|++  ++.++++++++.+|++.|.+++++++||+|++++++|+++..|+.+......                 
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~-----------------   62 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAV-----------------   62 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH-----------------
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccc-----------------
Confidence            479999999  9999999999999999999999999999999999999999999987541100                 


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                        .  ..........++.++|+++++++++++++.+++++|.++|
T Consensus        63 --~--~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~  103 (141)
T d3ddja1          63 --D--KLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKR  103 (141)
T ss_dssp             --H--HTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHT
T ss_pred             --c--ccccccccCCCHHHHhCcccccccccchhhHHHHHHHHcC
Confidence              0  0000012467899999999999999999999999998764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.46  E-value=1.6e-13  Score=102.07  Aligned_cols=123  Identities=17%  Similarity=0.176  Sum_probs=88.6

Q ss_pred             CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC--CCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  158 (207)
Q Consensus        81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~--~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~  158 (207)
                      ..++|+++|++  +++++++++++.++++.|.+++++++||+|+  ++.++|+++..|+++++........... .....
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~-~~~~~   85 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQP-FEEML   85 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSC-CCSCC
T ss_pred             cceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccc-hhhcc
Confidence            36789999999  9999999999999999999999999999984  4789999999999876633111000000 00000


Q ss_pred             chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ..+ ................+.++|.++++++++++++.+++++|.++|
T Consensus        86 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~  133 (160)
T d2d4za3          86 TLE-EIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLG  133 (160)
T ss_dssp             BHH-HHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHT
T ss_pred             ccc-hhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcC
Confidence            011 111222222223455678899999999999999999999999865

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.7e-13  Score=100.94  Aligned_cols=116  Identities=15%  Similarity=0.100  Sum_probs=92.6

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCC-----ccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSG-----VYT   84 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~-----~~~   84 (207)
                      ..++++.++.+..+|.+.|.++++++++|++           +++++.+++ |..|. ...+..... ....     ...
T Consensus        20 ~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd-----------~~~~~~Gvi-t~~di-~~~l~~~~~-~~~~~~v~~~~~   85 (145)
T d2v8qe1          20 ANIAMVRTTTPVYVALGIFVQHRVSALPVVD-----------EKGRVVDIY-SKFDV-INLAAEKTY-NNLDVSVTKALQ   85 (145)
T ss_dssp             SSCCCEETTCBHHHHHHHHHHHCCSEEEEEC-----------TTSBEEEEE-EGGGT-GGGGGSSCC-CCCSSBHHHHGG
T ss_pred             CCceEEcCcCcHHHHHHHHHHcCCCcccccc-----------cCCceEEEE-Ecchh-hhhhhcccc-cchhhhhhhccc
Confidence            3578999999999999999999999999997           566677888 87773 112222111 1111     124


Q ss_pred             ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +...|.+  ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++++
T Consensus        86 ~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~l  140 (145)
T d2v8qe1          86 HRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL  140 (145)
T ss_dssp             GCCSCCC--SCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             hhhhccC--CCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHH
Confidence            4556777  899999999999999999999999999999999999999999999865

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.44  E-value=1.1e-13  Score=100.83  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=88.0

Q ss_pred             ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc-------CCCCCcc
Q 028558           11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA-------APSSGVY   83 (207)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~-------~~~~~~~   83 (207)
                      .++++.++.+..+|.+.+.++|+++++|++           +  ++.++. +..|.. ..+.....       .......
T Consensus        10 ~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d-----------~--~lvg~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2          10 NPPILSKEDRLGSAFKKINEGGIGRIIVAN-----------E--KIEGLL-TTRDLL-STVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SCCEECTTSBHHHHHHHTTGGGCCEEEEES-----------S--SEEEEE-EHHHHH-GGGTTCC---CCHHHHHHHHTS
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCeEEEEEe-----------c--ceecee-eccchh-hhhccccccchhhhhccccccC
Confidence            355899999999999999999999999995           1  234444 444410 01100000       0011245


Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      +++++|++  ++.++++++++.+++++|.+++++++||+|++|+++|+||.+|++++.
T Consensus        75 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          75 PIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             BGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG
T ss_pred             CHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            79999999  999999999999999999999999999999999999999999999864

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.42  E-value=4.3e-14  Score=102.87  Aligned_cols=116  Identities=11%  Similarity=0.066  Sum_probs=93.8

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhh-cc-CCCCCccccc
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTAN-SA-APSSGVYTVG   86 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~-~~-~~~~~~~~v~   86 (207)
                      +-.|+++.++.+..+|.+.|.++|++++.|.+           +.+++.|++ +..|... .+... .. .......+++
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd-----------~~~~~vGii-t~~di~~-~~~~~~~~~~~~~~~~~v~   77 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD-----------PSYRLHGLI-GTNMIMN-SIFGLERIEFEKLDQITVE   77 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEEC-----------TTCBEEEEE-EHHHHHH-HHBCSSSBCGGGTTTSBHH
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEee-----------cccccccEE-EcchhHH-Hhhcccccccccccccccc
Confidence            56788999999999999999999999999997           556778888 7777311 11111 00 1123456899


Q ss_pred             ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++|++  ++.++.+++++.++.+.|.+++  .+||+|++|+++|+||.+|+++++
T Consensus        78 ~~m~~--~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l  128 (132)
T d1yava3          78 EVMLT--DIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKEL  128 (132)
T ss_dssp             HHSBC--SCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ccccc--cccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHH
Confidence            99999  9999999999999999998764  599999999999999999999864

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.42  E-value=8.4e-14  Score=100.96  Aligned_cols=113  Identities=18%  Similarity=0.077  Sum_probs=89.5

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM   89 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm   89 (207)
                      -++++++++.+..+|.+.|.++++++++|+.         ..+++++.++. +..|..  +.+...    .........|
T Consensus         9 ~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~---------~d~~~~~iGi~-~~~dl~--~~~~~~----~~~~~~~~~~   72 (131)
T d2riha1           9 RPPVSLPETATIREVATELAKNRVGLAVLTA---------RDNPKRPVAVV-SERDIL--RAVAQR----LDLDGPAMPI   72 (131)
T ss_dssp             SCCEEEETTCBHHHHHHHHHHHTCSEEEEEE---------TTEEEEEEEEE-EHHHHH--HHHHTT----CCTTSBSGGG
T ss_pred             CCCEEECCCCcHHHHHHHHHHhCCCcEEEEE---------EcCCCEEEEEE-eeeccc--cccccc----cccccccccc
Confidence            3567999999999999999999999999993         11456677777 766631  222221    1122344566


Q ss_pred             cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      ..  +..++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.
T Consensus        73 ~~--~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          73 AN--SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             CB--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             cc--cceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence            66  78899999999999999999999999999999999999999999975

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.42  E-value=1.1e-13  Score=103.08  Aligned_cols=120  Identities=16%  Similarity=0.186  Sum_probs=93.4

Q ss_pred             ccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccc
Q 028558            7 PHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVG   86 (207)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~   86 (207)
                      +....++++.++.+..+|.+.|.++++++++|++           +..++.|++ +..|..  +.+... .......++.
T Consensus         9 g~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd-----------~~~~~vG~i-t~~Dl~--~~~~~~-~~~~~~~~v~   73 (153)
T d2ooxe2           9 GTWSNLATASMETKVYDVIKMLAEKNISAVPIVN-----------SEGTLLNVY-ESVDVM--HLIQDG-DYSNLDLSVG   73 (153)
T ss_dssp             SBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEC-----------GGGBEEEEE-EHHHHH--HHHGGG-CGGGGGSBHH
T ss_pred             CCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeec-----------ccceEEEEE-Eeeeee--ehhccc-cccccccchh
Confidence            3345788999999999999999999999999997           566778888 877731  111111 0112234566


Q ss_pred             cccccc----CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           87 DFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        87 ~vm~~~----~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ++|...    .++.++.+++++.++++.|.+++++++||+|++|+++|+||++|++++.
T Consensus        74 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~  132 (153)
T d2ooxe2          74 EALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI  132 (153)
T ss_dssp             HHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             hheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            665431    1677899999999999999999999999999999999999999999865

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=1.1e-13  Score=101.54  Aligned_cols=117  Identities=9%  Similarity=0.017  Sum_probs=87.2

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCC-----cc
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSG-----VY   83 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~-----~~   83 (207)
                      +-+++++.++.+..+|.+.|.++++++++|++           +.+++.+++ |..|.  .+.+.........     .+
T Consensus        16 ~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd-----------~~~~~vG~i-t~~Di--~~~~~~~~~~~~~~~~~~~~   81 (140)
T d2nyca1          16 QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-----------ENGYLINVY-EAYDV--LGLIKGGIYNDLSLSVGEAL   81 (140)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-----------TTCBEEEEE-EHHHH--HHHHHTC----CCSBHHHHH
T ss_pred             CCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-----------cCCeEccee-hhhHH--HHHHhhccccccccchhhhh
Confidence            45789999999999999999999999999997           566778888 88883  1222221111111     11


Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      .....|..  ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++++
T Consensus        82 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          82 MRRSDDFE--GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             HHCC--------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             hhhhhccc--ccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            22344555  788999999999999999999999999999999999999999999853

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.38  E-value=7.8e-13  Score=95.39  Aligned_cols=86  Identities=26%  Similarity=0.428  Sum_probs=71.3

Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC--CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHH
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE  166 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~--~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (207)
                      |..  +++++++++++.+|+++|.+++++++||+|+  +|+++|+||.+|+.+...                        
T Consensus         3 mi~--dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~------------------------   56 (126)
T d1zfja4           3 VII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD------------------------   56 (126)
T ss_dssp             TSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC------------------------
T ss_pred             CEe--CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhc------------------------
Confidence            566  7889999999999999999999999999986  689999999999987431                        


Q ss_pred             HHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          167 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       167 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                             ........+|..+++++.+++++.+++++|.+++
T Consensus        57 -------~~~~~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~   90 (126)
T d1zfja4          57 -------YNAPISEHMTSEHLVTAAVGTDLETAERILHEHR   90 (126)
T ss_dssp             -------SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTT
T ss_pred             -------cCCceeeeeeccceeecCCCCCHHHHHHHHHhcC
Confidence                   0112234456678889999999999999998764

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=3.7e-13  Score=99.00  Aligned_cols=118  Identities=13%  Similarity=0.159  Sum_probs=92.2

Q ss_pred             ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhh-hhhhhh----------ccC
Q 028558            9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFAS-GTLTAN----------SAA   77 (207)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~-~~~~~~----------~~~   77 (207)
                      +..+++++++.+..+|++.+.++|+++++|++           +++.+.|++ |..|... ...-..          ...
T Consensus        11 ~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd-----------~~~~~vGii-s~~Dl~~~~~~~~~~~~~~~~~~~~~~   78 (145)
T d1o50a3          11 SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVA-----------RDNKLVGMI-PVMHLLKVSGFHFFGFIPKEELIRSSM   78 (145)
T ss_dssp             CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEE-----------ETTEEEEEE-EHHHHHHHHHHHHHCCCC-------CC
T ss_pred             CCCCEEECCcCcHHHHHHHHHHcCCceEEEec-----------cCcceeeee-ccchhhhhhhcccccccchhHHHHhhh
Confidence            45567999999999999999999999999997           566788888 8777211 110000          001


Q ss_pred             CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ......+++++|..   ++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        79 ~~~~~~~~~~~~~~---~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l  139 (145)
T d1o50a3          79 KRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL  139 (145)
T ss_dssp             CCCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             hhccccCHHHHcCC---CEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            12334456777755   67899999999999999999999999999999999999999999865

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.36  E-value=1.4e-12  Score=94.39  Aligned_cols=94  Identities=17%  Similarity=0.156  Sum_probs=77.9

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEE--cCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVv--d~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ++|+++|++  +++++++++++.+|++.|.+++++++||+  |.+++++|+++..|+++.....                
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~----------------   62 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR----------------   62 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT----------------
T ss_pred             CCHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc----------------
Confidence            368999999  99999999999999999999999999999  5568999999999999754211                


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                   .........+.++++++.+++++.+++++|.+++
T Consensus        63 -------------~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~   96 (131)
T d2riha1          63 -------------LDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHN   96 (131)
T ss_dssp             -------------CCTTSBSGGGCBCCCEEETTSBHHHHHHHHHHHT
T ss_pred             -------------cccccccccccccceeEeeecchHHHHHHHHHCC
Confidence                         1222344455678889999999999999998764

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.35  E-value=8.1e-13  Score=96.02  Aligned_cols=104  Identities=20%  Similarity=0.173  Sum_probs=82.5

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++|+++|++  +++++++++++.+|++.|.+++++++||+|  ++++|+++..|+++........              .
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d--~~lvg~~~~~~~~~~~~~~~~~--------------~   62 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKD--------------S   62 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC-----------------
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEe--cceeceeeccchhhhhcccccc--------------c
Confidence            368999999  999999999999999999999999999997  3799999999999865221100              0


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ...   .........+++++|+++++++.+++++.+++++|.+++
T Consensus        63 ~~~---~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~  104 (135)
T d3ddja2          63 CSQ---GDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN  104 (135)
T ss_dssp             CCH---HHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHT
T ss_pred             hhh---hhccccccCCHHHHhCCccceEEeccccchhhhhhhhcc
Confidence            000   011112457899999999999999999999999998764

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=7e-13  Score=98.92  Aligned_cols=123  Identities=11%  Similarity=0.092  Sum_probs=94.2

Q ss_pred             ccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchh-hh-hhhhhhccCCCC--
Q 028558            5 VLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVF-AS-GTLTANSAAPSS--   80 (207)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~-~~-~~~~~~~~~~~~--   80 (207)
                      ++|-+.++|+++++.+..+|.+.|.++++++++|.+          .+...+.|++ +..|. .. .+..... ....  
T Consensus        18 lm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~----------~~~~~~vG~i-s~~Dl~~~~~~~~~~~-~~~~~~   85 (159)
T d2v8qe2          18 LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWD----------SKKQSFVGML-TITDFINILHRYYKSA-LVQIYE   85 (159)
T ss_dssp             GSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEE----------TTTTEEEEEE-EHHHHHHHHHHHHHHH-TTTCCC
T ss_pred             ECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEE----------CCCCcEEEEE-EHHHHHHHHHhccccc-cchhhh
Confidence            357778899999999999999999999999998884          1455677777 77772 11 1110110 0000  


Q ss_pred             --------CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEc-CCCcEEEEEehhhHHhhh
Q 028558           81 --------GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        81 --------~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd-~~g~lvGiVt~~dl~~~~  141 (207)
                              ......++|.+  +++++++++++.++++.|.+++.+++||+| ++|+++|+||.+||++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          86 LEEHKIETWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             GGGCBHHHHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             hhhhhcccccceeeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence                    01134578888  899999999999999999999999999998 468999999999999864

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.33  E-value=1.2e-12  Score=97.19  Aligned_cols=119  Identities=9%  Similarity=-0.029  Sum_probs=90.3

Q ss_pred             cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhh--hhhhhh-------------
Q 028558           10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFAS--GTLTAN-------------   74 (207)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~--~~~~~~-------------   74 (207)
                      -++++++++.+..+|.+.+.+++++++.|++         ..+...+.++. +..|...  ......             
T Consensus        19 ~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd---------~~~~~~lvg~i-s~~dl~~~l~~~~~~~~~~~~~~~~~~~   88 (160)
T d2d4za3          19 RDVTSIASTSTYGDLLHVLRQTKLKFFPFVD---------TPDTNTLLGSI-DRTEVEGLLQRRISAYRRQPFEEMLTLE   88 (160)
T ss_dssp             SSCCCEETTCBHHHHHHHHHHCCCSEEEEES---------CTTTCBEEEEE-EHHHHHHHHHHHHHTTSSSCCCSCCBHH
T ss_pred             CCCeEECCCCcHHHHHHHHHhcCCCcccccc---------ccccccccccc-hHHHHHHHHhhccccccccchhhccccc
Confidence            4788999999999999999999999999996         11234455665 5555111  000000             


Q ss_pred             ------ccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           75 ------SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        75 ------~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                            ..........++++|.+  .++++.+++++.++++.|.+++++++||++ +|+++|+||++||++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          89 EIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             HHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             hhhhhhhhhcccccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHh
Confidence                  00012233456789999  999999999999999999999999999998 69999999999999864

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=5.6e-13  Score=99.49  Aligned_cols=114  Identities=18%  Similarity=0.105  Sum_probs=82.2

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC-CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ..+++|+|.+..++++++.++++.+|++.|.+++++++||+|+ +++++|+++.+|++..................    
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~----   87 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELE----   87 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGG----
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhh----
Confidence            4579999977657899999999999999999999999999974 68999999999998764221100000000000    


Q ss_pred             hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                         .....     .......++|.++++++++++++.+++++|.++|
T Consensus        88 ---~~~~~-----~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~  126 (159)
T d2v8qe2          88 ---EHKIE-----TWREVYLQDSFKPLVCISPNASLFDAVSSLIRNK  126 (159)
T ss_dssp             ---GCBHH-----HHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHT
T ss_pred             ---hhhcc-----cccceeeeeeccceEEECCCCcHHHHHHHHHHhC
Confidence               00000     0112346788889999999999999999999875

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=1.8e-12  Score=95.15  Aligned_cols=109  Identities=22%  Similarity=0.267  Sum_probs=79.3

Q ss_pred             cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhh
Q 028558           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT  163 (207)
Q Consensus        84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (207)
                      .+.++|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+.+...........        .    
T Consensus         5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~--------~----   70 (145)
T d1o50a3           5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIP--------K----   70 (145)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------------
T ss_pred             EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccc--------h----
Confidence            57789999  999999999999999999999999999999889999999999998754221100000        0    


Q ss_pred             HHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ..............++.++| .+++++.+++++.+|+++|.++|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~  113 (145)
T d1o50a3          71 EELIRSSMKRLIAKNASEIM-LDPVYVHMDTPLEEALKLMIDNN  113 (145)
T ss_dssp             ------CCCCCSSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHT
T ss_pred             hHHHHhhhhhccccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcC
Confidence            00000000012334466676 46688999999999999998765

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.5e-12  Score=94.74  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=80.5

Q ss_pred             ccccccccccCCc----eEECCCCCHHHHHHHHHHcCCCEeEEE--cCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCc
Q 028558           83 YTVGDFMTTKEEL----HVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (207)
Q Consensus        83 ~~v~~vm~~~~~~----~~v~~~~~v~ea~~~m~~~~~~~lpVv--d~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~  156 (207)
                      ..++|+|.+....    +.+.+++++.+++++|.+++++++||+  +++++++|+||.+||++++........... ...
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~-~~~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV-STS   81 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC-TTC
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccc-cch
Confidence            3578899874322    445778899999999999999999999  456899999999999976632100000000 000


Q ss_pred             ccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ........  ...........++.++|.++++++.+++++.+++++|.++|
T Consensus        82 ~~~~~~~~--~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~  130 (169)
T d2j9la1          82 IIYFTEHS--PPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLG  130 (169)
T ss_dssp             EEECSSSC--CCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHT
T ss_pred             hhhhcccc--hhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcC
Confidence            00000000  00000012355689999999999999999999999998765

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.27  E-value=1.7e-12  Score=98.58  Aligned_cols=123  Identities=19%  Similarity=0.201  Sum_probs=94.2

Q ss_pred             ccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhh-ccCC-C---
Q 028558            5 VLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTAN-SAAP-S---   79 (207)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~-~~~~-~---   79 (207)
                      +++.|..+++++++.++.+|...|.++|+++++|.+          .++..+.|++ |..|... .+... .... .   
T Consensus        25 vm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd----------~~~~~~vGii-s~~Di~~-~l~~~~~~~~~~~~~   92 (179)
T d2ooxe1          25 VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWD----------SEANKFAGLL-TMADFVN-VIKYYYQSSSFPEAI   92 (179)
T ss_dssp             HSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEE----------TTTTEEEEEE-CHHHHHH-HHHHHHHHCSCGGGG
T ss_pred             eCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEe----------CCCCeeEEEE-eechHHH-HHHhccccccchhhh
Confidence            467788999999999999999999999999999995          1345677887 8888311 11110 0000 0   


Q ss_pred             -----------CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCC-----cEEEEEehhhHHhhh
Q 028558           80 -----------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-----KLVGLVSDYDLLALD  141 (207)
Q Consensus        80 -----------~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g-----~lvGiVt~~dl~~~~  141 (207)
                                 .....+..+|.+  +++++++++++.+++..|.+++++++||+|++|     +++|+||.+||++.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l  168 (179)
T d2ooxe1          93 AEIDKFRLLGLREVERKIGAIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI  168 (179)
T ss_dssp             GGGGGSBHHHHHHHHHHTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHH
T ss_pred             hhhhccchhhhcccceeeeeccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHH
Confidence                       001124456888  899999999999999999999999999998654     699999999999865

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.23  E-value=1.4e-11  Score=91.48  Aligned_cols=98  Identities=16%  Similarity=0.189  Sum_probs=75.3

Q ss_pred             cccccccc-cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           84 TVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        84 ~v~~vm~~-~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++++++.. .++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++........               
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~---------------   66 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYS---------------   66 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGG---------------
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhcccccc---------------
Confidence            45566543 23799999999999999999999999999999999999999999998765321110               


Q ss_pred             hHHHHHHHHhhhcCCccc------ccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVG------DLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~------~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                                 ....++.      ..+..++.++.+++++.+++++|.+++
T Consensus        67 -----------~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~  106 (153)
T d2ooxe2          67 -----------NLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSR  106 (153)
T ss_dssp             -----------GGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSC
T ss_pred             -----------ccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhce
Confidence                       0112233      344456778999999999999998875

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.22  E-value=1.5e-11  Score=93.29  Aligned_cols=116  Identities=21%  Similarity=0.188  Sum_probs=82.6

Q ss_pred             cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC-CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  160 (207)
Q Consensus        82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~  160 (207)
                      ..++.|+|.+..++++++++.++.+|++.|.+++++++||+|+ +++++|++|..|+++.+.......    ..+.....
T Consensus        19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~----~~~~~~~~   94 (179)
T d2ooxe1          19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSS----SFPEAIAE   94 (179)
T ss_dssp             HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHC----SCGGGGGG
T ss_pred             CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccc----cchhhhhh
Confidence            3479999986558999999999999999999999999999984 589999999999987652211000    00000000


Q ss_pred             hhh--HHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          161 WKT--FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       161 ~~~--~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      +..  ...+.      ........|.++++++++++++.+++++|.++|
T Consensus        95 ~~~~~~~~~~------~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~  137 (179)
T d2ooxe1          95 IDKFRLLGLR------EVERKIGAIPPETIYVHPMHSLMDACLAMSKSR  137 (179)
T ss_dssp             GGGSBHHHHH------HHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTT
T ss_pred             hhccchhhhc------ccceeeeecccCceEECCCCcHHHHHHHhhhcC
Confidence            000  00111      112344578889999999999999999998764

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.4e-12  Score=94.11  Aligned_cols=115  Identities=10%  Similarity=0.055  Sum_probs=87.2

Q ss_pred             cccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhh-hhhhh-h------------------
Q 028558           14 RLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFA-SGTLT-A------------------   73 (207)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~-~~~~~-~------------------   73 (207)
                      ...++.+..+|.+.+.+++++++.|..         +.+.+.+.|++ |..|.. ..... .                  
T Consensus        21 ~~~~~~tv~~a~~ll~~~~~~~~PVV~---------~~~~~~lvG~i-s~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~   90 (169)
T d2j9la1          21 LTQDSMTVEDVETIISETTYSGFPVVV---------SRESQRLVGFV-LRRDLIISIENARKKQDGVVSTSIIYFTEHSP   90 (169)
T ss_dssp             EESSCEEHHHHHHHHHHCCCSEEEEES---------CTTTCBEEEEE-EHHHHHHHHHHHHTSCSCCCTTCEEECSSSCC
T ss_pred             ECCCcCCHHHHHHHHHHcCCCceeeee---------cCCCCeEEEEE-EhHHHHHHHhcccccccccccchhhhhcccch
Confidence            456777899999999999999997774         11445567777 666621 11100 0                  


Q ss_pred             hccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558           74 NSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (207)
Q Consensus        74 ~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~  141 (207)
                      ...........++++|.+  ++.++.+++++.+++++|.+++.+++||+| +|+++|+||++|+++++
T Consensus        91 ~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          91 PLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHI  155 (169)
T ss_dssp             CCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             hhhhccccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            001122335678999999  999999999999999999999999999988 68999999999999865

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=1.4e-11  Score=90.10  Aligned_cols=99  Identities=17%  Similarity=0.165  Sum_probs=69.7

Q ss_pred             ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHH
Q 028558           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE  166 (207)
Q Consensus        87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (207)
                      .+|..  ++.++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++..........         ..+     
T Consensus        13 ~~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~---------~~~-----   76 (140)
T d2nyca1          13 IITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL---------SLS-----   76 (140)
T ss_dssp             CCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----C---------CSB-----
T ss_pred             CccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcccccc---------ccc-----
Confidence            34666  89999999999999999999999999999999999999999999986533221100         000     


Q ss_pred             HHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          167 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       167 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                      ....      ......+..+++++++++++.+++++|.+++
T Consensus        77 ~~~~------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~  111 (140)
T d2nyca1          77 VGEA------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR  111 (140)
T ss_dssp             HHHH------HHHCC------CEECTTSBHHHHHHHHHHHT
T ss_pred             hhhh------hhhhhhcccccEEECCCCcHHHHHHHHHhcC
Confidence            0000      0122344567789999999999999998764

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=4.1e-11  Score=87.84  Aligned_cols=104  Identities=19%  Similarity=0.257  Sum_probs=76.9

Q ss_pred             cccccccc-cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558           84 TVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  162 (207)
Q Consensus        84 ~v~~vm~~-~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~  162 (207)
                      ++++++.. .++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++.+........        ...  
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~--------~~~--   79 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL--------DVS--   79 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCC--------SSB--
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccch--------hhh--
Confidence            45555332 1278999999999999999999999999999999999999999999886533211000        000  


Q ss_pred             hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558          163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                             .   .........|..+++++.+++++.+++++|.+++
T Consensus        80 -------v---~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~  114 (145)
T d2v8qe1          80 -------V---TKALQHRSHYFEGVLKCYLHETLEAIINRLVEAE  114 (145)
T ss_dssp             -------H---HHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHT
T ss_pred             -------h---hhccchhhhccCCCeEECCCCcHHHHHHHHHHcC
Confidence                   0   0112345567778899999999999999998764

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.11  E-value=1.7e-12  Score=93.01  Aligned_cols=87  Identities=22%  Similarity=0.357  Sum_probs=38.8

Q ss_pred             ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHH
Q 028558           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN  165 (207)
Q Consensus        89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (207)
                      |.+  +++++.+++++.+|+++|.+++++++||+|+   +|+++|+||.+|+.....                       
T Consensus         2 m~~--~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~-----------------------   56 (120)
T d1jr1a4           2 FIT--DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKE-----------------------   56 (120)
T ss_dssp             EEC--TTCC----CCCC--CCBC---------------CTTCCC------------------------------------
T ss_pred             ccc--CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhc-----------------------
Confidence            455  7889999999999999999999999999984   579999999999864320                       


Q ss_pred             HHHHHHhhhcCCcccccc--cCCCeEecCCCCHHHHHHHHhhcC
Q 028558          166 EVQKLLSKTNGKMVGDLM--TPAPVVVRETTNLEDAARSSHSFF  207 (207)
Q Consensus       166 ~~~~~~~~~~~~~v~~im--~~~~~~v~~~~~l~e~l~~m~~~g  207 (207)
                             .....++..+|  .++++++.+++++.+|+++|.+++
T Consensus        57 -------~~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~   93 (120)
T d1jr1a4          57 -------EEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSK   93 (120)
T ss_dssp             ----------------CCSBTTTSCCEETTCCHHHHHHHTCSCC
T ss_pred             -------cccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcC
Confidence                   01123344443  456889999999999999998864

>d2ioja1 c.98.2.2 (A:206-325) Hypothetical protein AF1212 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: MurF and HprK N-domain-like
superfamily: HprK N-terminal domain-like
family: DRTGG domain
domain: Hypothetical protein AF1212
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.86  E-value=0.025  Score=38.90  Aligned_cols=55  Identities=11%  Similarity=0.156  Sum_probs=42.8

Q ss_pred             ccCCCCCCccccccccc-CCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhhhcc
Q 028558           15 LRAPPAGRTSGRTSFAL-QLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSA   76 (207)
Q Consensus        15 ~~~~~~~~~~~~~~~~~-~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~~~~   76 (207)
                      .|++.+.     .|++. +++|+|+|+ |..+.+.+  .+++.+++++. +++| +.+++.+.+.+
T Consensus        55 DR~di~l-----aa~~~~~i~~iIltg-g~~p~~~i~~la~~~~ipil~-t~~dTf~ta~~l~~~~  113 (120)
T d2ioja1          55 DRSDLLL-----TALEMPNVRCLILTG-NLEPVQLVLTKAEERGVPVIL-TGHDTLTAVSRLESVF  113 (120)
T ss_dssp             TCHHHHH-----HHTTCTTEEEEEEET-TCCCCHHHHHHHHHHTCCEEE-CSSCHHHHHHHHHTTC
T ss_pred             CcHHHHH-----HHHhCCCceEEEEEC-CCCCCHHHHHHHHhCCCeEEE-ECCCHHHHHHHHHHHH
Confidence            5554443     56666 589999999 88888777  77888999999 9999 87888777654

>d1ko7a1 c.98.2.1 (A:1-129) HPr kinase/phoshatase HprK N-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: MurF and HprK N-domain-like
superfamily: HprK N-terminal domain-like
family: HPr kinase/phoshatase HprK N-terminal domain
domain: HPr kinase/phoshatase HprK N-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=84.67  E-value=0.15  Score=34.83  Aligned_cols=42  Identities=14%  Similarity=0.178  Sum_probs=35.3

Q ss_pred             CcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch
Q 028558           22 RTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV   65 (207)
Q Consensus        22 ~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d   65 (207)
                      .+..+.+.+.+++|+|+|+ |..+.+.+  .+++++++++. |+.+
T Consensus        70 ~~~i~~l~~~~~~~lIit~-g~~~p~~li~~a~~~~iPll~-t~~~  113 (129)
T d1ko7a1          70 KGRMRKLCRPETPAIIVTR-DLEPPEELIEAAKEHETPLIT-SKIA  113 (129)
T ss_dssp             TTHHHHHCCTTCCCEEECT-TCCCCHHHHHHHHHTTCCEEE-CCSC
T ss_pred             HHHHHHHhCCCCcEEEEEC-CCCCCHHHHHHHHHhCCeEEE-eCCc
Confidence            4556778889999999998 77777777  78889999999 8888

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=82.26  E-value=0.0055  Score=45.91  Aligned_cols=56  Identities=13%  Similarity=0.135  Sum_probs=50.5

Q ss_pred             ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (207)
Q Consensus        83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~  140 (207)
                      ..+.++|..  .+.++..+++-.++.++|.+...+..||++++++.+|.|+.+|+..+
T Consensus       137 ~~l~~i~~~--~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A  192 (213)
T d1lkvx_         137 LVLREVDTR--DLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEA  192 (213)
T ss_dssp             HHHTTSCHH--HHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             HHHHHhhhh--hheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence            356788888  88889999999999999999999999999999999999999998653