Citrus Sinensis ID: 028564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MAPRKRKAEGVEGAAVKRVAETTLTRVTRSVTRRVNSNLADSSVELAKAELPTKNKKAKATGKKNKKKKKEDVKAEEEIEAEKVKVQEDVVEPETEEAEEEVEPDKEEAAGDAFDGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVVSDIVAKLK
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccHHHHcccccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEcccccccccEEEEEcccEEEEEcccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEccHHHcHcHHHHHHHHHHcccHHHHHHccccHccccHHcccccccHHHHcccHHHHHHHHHcccHccccccccccHHHHHHccHHHccccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccEEEEEccccEEEEEEccccccccHHHcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maprkrkaegvegAAVKRVAETTLTRVTRSVTRRVNSNLADSSVELAKaelptknkkakatgkknkkkkkEDVKAEEEIEAEKVKvqedvvepeteeaeeevepdkeeaagdafdgdeskeRTVVIEHCKQCNSFKTRANhvkdglekgvpginvllnpekprrgcfEIREDGGEKFISLLdmkrpfkpmkdldmDEVVSDIVAKLK
Flexible Loop (DISEMBL)
maprkrkaegvegaavkrvaettltrvtrsvtrrvnsnladssvelakaelptknkkakatgkknkkkkkedvkaeeeieaekvkvqedvvepeteeaeeevepdkeeaagdafdgdesKERTVVIEHCkqcnsfktranhvkdglekgvpginvllnpekprrGCFEIREDGGEKFISLLDMKRpfkpmkdldmdeVVSDIVAKLK
Low Complexity Region (SEG)
MAPRKRKAEGVEGAAVKRVAEttltrvtrsvtrrvNSNLADSSVELAKAELPTknkkakatgkknkkkkkedvkaeeeieaekvkVQedvvepeteeaeeevepdkeeaaGDAFDGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVVSDIVAKLK
Disordered region (IsUnstruct)
**************************************************************************************************************************TVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDM************************
Disordered Region (DISOPRED)
***************************************************************************************************************************VVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVVSDIVAKLK
Disordered Region (DISEMBL)
**************AVKRVAETTLTRVTRSVTRRVNSNLADSSVELAKAEL*****************************AEKVKVQ*******************************SKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVVSDIVAKLK
Disordered Region (DISPRO)
***********************************************************************************************************************KERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVVSDIVAKLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPRKRKAEGVEGAAVKRVAETTLTRVTRSVTRRVNSNLADSSVELAKAELPTKNKKAKATGKKNKxxxxxxxxxxxxxxxxxxxxxEDVVEPETEEAEEEVEPDKEEAAGDAFDGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVVSDIVAKLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q4R5Y4	122	Selenoprotein H OS=Macaca	N/A	no	0.434	0.737	0.344	2e-05
Q8IZQ5	122	Selenoprotein H OS=Homo s	yes	no	0.434	0.737	0.344	3e-05
Q3UQA7	116	Selenoprotein H OS=Mus mu	yes	no	0.227	0.405	0.425	0.0002

>sp|Q4R5Y4|SELH_MACFA Selenoprotein H OS=Macaca fascicularis GN=SELH PE=2 SV=2

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 113 AFDGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEI--- 169
           A  G+  +E TVVIEHC     +   A  +   L    P + V +NP KPRRG FE+   
Sbjct: 25  ANSGEGMEETTVVIEHCTSURVYGXNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL 84

Query: 170 REDGGEKFISLLDMKRPFKPMKDLDMDEVVSDI 202
           R DG    +     K P + +K  +  EVV ++
Sbjct: 85  RPDGSSAELWTGIKKGPPRKLKFPEPQEVVEEL 117

May be involved in a redox-related process.
Macaca fascicularis (taxid: 9541)

>sp|Q8IZQ5|SELH_HUMAN Selenoprotein H OS=Homo sapiens GN=SELH PE=1 SV=2

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 113 AFDGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEI--- 169
           A  G+  +E TVVIEHC     +   A  +   L    P + V +NP KPRRG FE+   
Sbjct: 25  ANGGEGMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL 84

Query: 170 REDGGEKFISLLDMKRPFKPMKDLDMDEVVSDI 202
           R DG    +     K P + +K  +  EVV ++
Sbjct: 85  RPDGSSAELWTGIKKGPPRKLKFPEPQEVVEEL 117

May be involved in a redox-related process.

Homo sapiens (taxid: 9606)

>sp|Q3UQA7|SELH_MOUSE Selenoprotein H OS=Mus musculus GN=Selh PE=2 SV=2

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 123 TVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEI 169
           TVVIEHC     +   A  +   L+   P + V +NP KPRRG FE+
Sbjct: 29  TVVIEHCTSURVYGRHAAALSQALQLEAPELPVQVNPSKPRRGSFEV 75

May be involved in a redox-related process.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
147791360	154	hypothetical protein VITISV_008125 [Viti	0.743	1.0	0.502	3e-39
225429797	154	PREDICTED: uncharacterized protein LOC10	0.739	0.993	0.504	2e-38
449441986	172	PREDICTED: uncharacterized protein LOC10	0.826	0.994	0.502	3e-38
224115678	210	predicted protein [Populus trichocarpa]	0.942	0.928	0.465	5e-38
255574111	173	conserved hypothetical protein [Ricinus	0.835	1.0	0.483	6e-35
297802894	179	hypothetical protein ARALYDRAFT_913334 [	0.405	0.469	0.761	4e-34
363808226	188	uncharacterized protein LOC100788694 [Gl	0.526	0.579	0.625	2e-32
22329049	186	selenium binding protein [Arabidopsis th	0.898	1.0	0.458	3e-32
18400547	183	selenium binding protein [Arabidopsis th	0.429	0.486	0.707	3e-31
297821743	197	hypothetical protein ARALYDRAFT_481300 [	0.405	0.426	0.726	6e-31

>gi|147791360|emb|CAN66162.1| hypothetical protein VITISV_008125 [Vitis vinifera]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/207 (50%), Positives = 122/207 (58%), Gaps = 53/207 (25%)

Query: 1   MAPRKRKAEGVEGAAVKRVAETTLTRVTRSVTRRVNSNLADSSVELAKAELPTKNKKAKA 60
           MAP+KR+    EG A    + TT  RVTRS TRR+ +   DS   +A A  P +  K   
Sbjct: 1   MAPKKRR----EGEAPVDTS-TTSVRVTRSSTRRLGAKANDS---VAPAPAPLERPK--- 49

Query: 61  TGKKNKKKKKEDVKAEEEIEAEKVKVQEDVVEPETEEAEEEVEPDKEEAAGDAFDGDESK 120
                                +KVK  EDV EPE                    DG    
Sbjct: 50  ---------------------KKVKKTEDVKEPE-----------------KVADG---- 67

Query: 121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISL 180
            +T+VIEHCKQCNSFKTRA  VKDGLEKGV GI V++NPEKPRRGCFEIRE+GGEK+ISL
Sbjct: 68  SKTIVIEHCKQCNSFKTRATQVKDGLEKGVLGITVVVNPEKPRRGCFEIREEGGEKYISL 127

Query: 181 LDMKRPFKPMKDLDMDEVVSDIVAKLK 207
           LDMKRPF PMK LDMD+V+SDI+ K+K
Sbjct: 128 LDMKRPFAPMKALDMDKVISDIIDKIK 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429797|ref|XP_002282811.1| PREDICTED: uncharacterized protein LOC100261165 [Vitis vinifera] gi|296081772|emb|CBI20777.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 120/208 (57%), Gaps = 55/208 (26%)

Query: 1   MAPRKRKAEGVEGAAVKRVAETTLTRVTRSVTRRVNSNLADS-SVELAKAELPTKNKKAK 59
           MAP+KR+    EG A    + TT  RVTRS TRR+ +   DS +   A  E P K     
Sbjct: 1   MAPKKRR----EGEAPVDTS-TTSVRVTRSSTRRLGAKANDSVAPAPAPPERPKK----- 50

Query: 60  ATGKKNKKKKKEDVKAEEEIEAEKVKVQEDVVEPETEEAEEEVEPDKEEAAGDAFDGDES 119
                                  KVK  EDV EPE                    DG   
Sbjct: 51  -----------------------KVKKTEDVKEPE-----------------KVADG--- 67

Query: 120 KERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFIS 179
             +T+VIEHCKQCNSFKTRA  VKDGLEKGV GI V++NPEKPRRGCFEIRE+GGEKFIS
Sbjct: 68  -SKTIVIEHCKQCNSFKTRATQVKDGLEKGVLGITVVVNPEKPRRGCFEIREEGGEKFIS 126

Query: 180 LLDMKRPFKPMKDLDMDEVVSDIVAKLK 207
           LLDMKRPF PMK LDMD+V+SDI+ K+K
Sbjct: 127 LLDMKRPFAPMKALDMDKVISDIIDKIK 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441986|ref|XP_004138763.1| PREDICTED: uncharacterized protein LOC101205567 [Cucumis sativus] gi|449499559|ref|XP_004160849.1| PREDICTED: uncharacterized protein LOC101225917 isoform 2 [Cucumis sativus]

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/207 (50%), Positives = 125/207 (60%), Gaps = 36/207 (17%)

Query: 1   MAPRKRKAEGVEGAAVKRVAETTLTRVTRSVTRRVNSNLADSSVELAKAELPTKNKKAKA 60
           MAPRKR     E   V++ A  T +R+TRS  R      A+S  +L   ELP K+KKAK 
Sbjct: 1   MAPRKRTKNQEEDLVVEKPAPAT-SRLTRSSARLA----ANSKADLTVTELP-KSKKAKR 54

Query: 61  TGKKNKKKKKEDVKAEEEIEAEKVKVQEDVVEPETEEAEEEVEPDKEEAAGDAFDGDESK 120
             K+N K         EE+E ++VKV                     +      D D +K
Sbjct: 55  APKENGK--------VEEVENKEVKV---------------------DVGLGKLDKD-AK 84

Query: 121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISL 180
            RTVVIEHCKQC SFK RA  V+ GLE GVPGI VLLNP+KPRRGCFEIR + GEKFISL
Sbjct: 85  SRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISL 144

Query: 181 LDMKRPFKPMKDLDMDEVVSDIVAKLK 207
           LDMKRPF  MK+L+MDEV+SDI+ K+K
Sbjct: 145 LDMKRPFTRMKELNMDEVISDIIEKIK 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115678|ref|XP_002332115.1| predicted protein [Populus trichocarpa] gi|222874935|gb|EEF12066.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/215 (46%), Positives = 131/215 (60%), Gaps = 20/215 (9%)

Query: 1   MAPRKRKAEGVEGAAVKRVAETTLTRVTRSVTRRVNSNLADSSVELAKAELPTKNKKAKA 60
           MAPRK KAE  +  + ++ A     R+TRS  +R N+ L +   E  K     K K+ KA
Sbjct: 1   MAPRK-KAEETKSTSSEKPATRRSARMTRSTAKRFNAKLTELPTESGK-----KRKQEKA 54

Query: 61  TGKKNKK-----KKKEDVKAEEEIEAE---KVKVQEDVVEPETEEAEEEVEPDKEEAAGD 112
              K KK     K++ + K     EAE   K +  ++      E+  +E +  +E  AGD
Sbjct: 55  AESKEKKVKTHVKEEAETKTSSSSEAEVEGKAEEVKEEEPEADEDGTKEEDAKEESPAGD 114

Query: 113 AFDGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIRED 172
           A        +T+VIEHCKQCN+FKTRA  VKDGL    PGI+VLLNPEKPRRGCFEIRE+
Sbjct: 115 AVT------KTIVIEHCKQCNAFKTRAIQVKDGLLSAFPGISVLLNPEKPRRGCFEIREE 168

Query: 173 GGEKFISLLDMKRPFKPMKDLDMDEVVSDIVAKLK 207
           GGE FISL +MKRPF P+K LDMD V+SDI+ +++
Sbjct: 169 GGETFISLQNMKRPFPPLKALDMDRVISDIIDRVR 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574111|ref|XP_002527971.1| conserved hypothetical protein [Ricinus communis] gi|223532597|gb|EEF34383.1| conserved hypothetical protein [Ricinus communis]

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/207 (48%), Positives = 124/207 (59%), Gaps = 34/207 (16%)

Query: 1   MAPRKRKAEGVEGAAVKRVAETTLTRVTRSVTRRVNSNLADSSVELAKAELPTKNKKAKA 60
           MAPRKRK+E  + A      +    RVTRS  R     LA S      AELP K K   A
Sbjct: 1   MAPRKRKSEAADDATAAVTTK----RVTRSSAR-----LAKSRPAAPAAELPKKKKGKVA 51

Query: 61  TGKKNKKKKKEDVKAEEEIEAEKVKVQEDVVEPETEEAEEEVEPDKEEAAGDAFDGDESK 120
                K +KKE          E VK        +TEEA+   E ++E A G+        
Sbjct: 52  AADHKKAEKKE----------ESVK--------KTEEADNVEEQEQETADGE-------N 86

Query: 121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISL 180
           ++T+VIEHC QC SFKT A  VK+GLE  +P + VLLNP+KPR+GCFEIR++GGEKFI+L
Sbjct: 87  KKTIVIEHCTQCRSFKTSATQVKNGLEAALPSVIVLLNPDKPRKGCFEIRKEGGEKFITL 146

Query: 181 LDMKRPFKPMKDLDMDEVVSDIVAKLK 207
           L MKRPFKPMKDLDM +V+SDI+ K+K
Sbjct: 147 LGMKRPFKPMKDLDMKKVISDIIDKIK 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802894|ref|XP_002869331.1| hypothetical protein ARALYDRAFT_913334 [Arabidopsis lyrata subsp. lyrata] gi|297315167|gb|EFH45590.1| hypothetical protein ARALYDRAFT_913334 [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 74/84 (88%)

Query: 124 VVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDM 183
           +VIEHCKQCN+FKTRA  VK+GLE  VPG+NV LNPEKPRRGCFEIRE+GGE FISLL+M
Sbjct: 96  IVIEHCKQCNAFKTRAIQVKEGLEGAVPGVNVTLNPEKPRRGCFEIREEGGETFISLLEM 155

Query: 184 KRPFKPMKDLDMDEVVSDIVAKLK 207
           KRPF PMK LDM+EV+ DI+ K+K
Sbjct: 156 KRPFAPMKALDMEEVIEDIIKKIK 179

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808226|ref|NP_001242745.1| uncharacterized protein LOC100788694 [Glycine max] gi|255640588|gb|ACU20579.1| unknown [Glycine max]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 91/112 (81%), Gaps = 3/112 (2%)

Query: 98  AEEEVEPDKEEAAGDAFDGD--ESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINV 155
            E E + +++E  GDA + +  ++  +T+V+EHCKQCNSFKTRAN VK GLEK   GI V
Sbjct: 73  VESENKAEEKEEGGDASEKNVLDASNKTIVVEHCKQCNSFKTRANLVKVGLEKADIGITV 132

Query: 156 LLNPEKPRRGCFEIR-EDGGEKFISLLDMKRPFKPMKDLDMDEVVSDIVAKL 206
           +LNPEKPR+GCFEIR E GG+KFI+LLD+KRPFKPMKDLDMD+V+SDI+ ++
Sbjct: 133 ILNPEKPRKGCFEIRQEGGGKKFITLLDLKRPFKPMKDLDMDKVISDIIEEI 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329049|ref|NP_194864.2| selenium binding protein [Arabidopsis thaliana] gi|17065486|gb|AAL32897.1| Unknown protein [Arabidopsis thaliana] gi|20148645|gb|AAM10213.1| unknown protein [Arabidopsis thaliana] gi|332660500|gb|AEE85900.1| selenium binding protein [Arabidopsis thaliana]

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 119/207 (57%), Gaps = 21/207 (10%)

Query: 1   MAPRKRKAEGVEGAAVKRVAETTLTRVTRSVTRRVNSNLADSSVELAKAELPTKNKKAKA 60
           M P+K KA+G E A  K +     +RVTRS+  R  S               T+   AKA
Sbjct: 1   MPPKKSKADGEEKA--KPLTTLASSRVTRSMDSRTRSQ--------------TQQNGAKA 44

Query: 61  TGKKNKKKKKEDVKAEEEIEAEKVKVQEDVVEPETEEAEEEVEPDKEEAAGDAFDGDESK 120
            G   K   K+  +    IE  + K  +   E E  E   E E   E+   +  D   +K
Sbjct: 45  AGSATKPATKKAKRKNSAIETGRAKKGKKEEEVEEPEEAVEEE--VEKEEPEVEDPTRTK 102

Query: 121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISL 180
              +VIEHCKQCN+FKTRA  VK+ LE  VPG+ V LNPEKPRRGCFEIRE+GG+ FISL
Sbjct: 103 ---IVIEHCKQCNAFKTRAIQVKEALEGAVPGVTVSLNPEKPRRGCFEIREEGGQTFISL 159

Query: 181 LDMKRPFKPMKDLDMDEVVSDIVAKLK 207
           L+MKRPF PMK LDM+EV+ DI+ K+K
Sbjct: 160 LEMKRPFAPMKALDMEEVIEDIIKKVK 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400547|ref|NP_565570.1| selenium binding protein [Arabidopsis thaliana] gi|4337201|gb|AAD18115.1| expressed protein [Arabidopsis thaliana] gi|21553632|gb|AAM62725.1| unknown [Arabidopsis thaliana] gi|21805670|gb|AAM76749.1| hypothetical protein [Arabidopsis thaliana] gi|50058859|gb|AAT69174.1| hypothetical protein At2g24440 [Arabidopsis thaliana] gi|330252484|gb|AEC07578.1| selenium binding protein [Arabidopsis thaliana]

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 77/89 (86%)

Query: 119 SKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFI 178
           S ++ +VIEHCKQC SFK RAN VK+GLE+ VPGI V +NP+KPRRGCFEIRE+GGE FI
Sbjct: 95  SDKKKIVIEHCKQCKSFKERANEVKEGLEEAVPGIIVTVNPDKPRRGCFEIREEGGETFI 154

Query: 179 SLLDMKRPFKPMKDLDMDEVVSDIVAKLK 207
           SLL MKRPF PMK+L+M+EV++DIV K+K
Sbjct: 155 SLLAMKRPFTPMKELNMEEVIADIVEKIK 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821743|ref|XP_002878754.1| hypothetical protein ARALYDRAFT_481300 [Arabidopsis lyrata subsp. lyrata] gi|297324593|gb|EFH55013.1| hypothetical protein ARALYDRAFT_481300 [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/84 (72%), Positives = 74/84 (88%)

Query: 124 VVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDM 183
           +VIEHCKQC SF+ RAN VK+GLE+ VPGI V +NP+KPRRGCFEIRE+GGE FISLL M
Sbjct: 114 IVIEHCKQCKSFRERANEVKEGLEEAVPGIIVTVNPDKPRRGCFEIREEGGETFISLLGM 173

Query: 184 KRPFKPMKDLDMDEVVSDIVAKLK 207
           KRPF PMK+L+M+EV++DIV K+K
Sbjct: 174 KRPFTPMKELNMEEVITDIVEKIK 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2128191	186	AT4G31360 [Arabidopsis thalian	0.434	0.483	0.703	1.5e-33
TAIR|locus:2061097	183	AT2G24440 [Arabidopsis thalian	0.449	0.508	0.688	1.8e-32
UNIPROTKB|Q8IZQ5	122	SELH "Selenoprotein H" [Homo s	0.420	0.713	0.344	1.3e-10
UNIPROTKB|H0YE28	94	C11orf31 "Protein C11orf31" [H	0.400	0.882	0.360	3.3e-08
ZFIN|ZDB-GENE-030411-2	127	seph "selenoprotein H" [Danio	0.449	0.732	0.336	2.1e-06
MGI|MGI:1919907	116	2700094K13Rik "RIKEN cDNA 2700	0.386	0.689	0.337	3.4e-06

TAIR|locus:2128191 AT4G31360 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 64/91 (70%), Positives = 75/91 (82%)

Query:   118 ESKERT-VVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEK 176
             E   RT +VIEHCKQCN+FKTRA  VK+ LE  VPG+ V LNPEKPRRGCFEIRE+GG+ 
Sbjct:    96 EDPTRTKIVIEHCKQCNAFKTRAIQVKEALEGAVPGVTVSLNPEKPRRGCFEIREEGGQT 155

Query:   177 FISLLDMKRPFKPMKDLDMDEVVSDIVAKLK 207
             FISLL+MKRPF PMK LDM+EV+ DI+ K+K
Sbjct:   156 FISLLEMKRPFAPMKALDMEEVIEDIIKKVK 186

GO:0005634 "nucleus" evidence=ISM

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2061097 AT2G24440 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 64/93 (68%), Positives = 80/93 (86%)

Query:   115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGG 174
             + D+S ++ +VIEHCKQC SFK RAN VK+GLE+ VPGI V +NP+KPRRGCFEIRE+GG
Sbjct:    91 EDDDSDKKKIVIEHCKQCKSFKERANEVKEGLEEAVPGIIVTVNPDKPRRGCFEIREEGG 150

Query:   175 EKFISLLDMKRPFKPMKDLDMDEVVSDIVAKLK 207
             E FISLL MKRPF PMK+L+M+EV++DIV K+K
Sbjct:   151 ETFISLLAMKRPFTPMKELNMEEVIADIVEKIK 183

GO:0005634 "nucleus" evidence=ISM

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q8IZQ5 SELH "Selenoprotein H" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 31/90 (34%), Positives = 44/90 (48%)

Query:   116 GDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEI---RED 172
             G+  +E TVVIEHC     +   A  +   L    P + V +NP KPRRG FE+   R D
Sbjct:    28 GEGMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPD 87

Query:   173 GGEKFISLLDMKRPFKPMKDLDMDEVVSDI 202
             G    +     K P + +K  +  EVV ++
Sbjct:    88 GSSAELWTGIKKGPPRKLKFPEPQEVVEEL 117

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|H0YE28 C11orf31 "Protein C11orf31" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 31/86 (36%), Positives = 43/86 (50%)

Query:   120 KERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEI---REDGGEK 176
             +E TVVIEHC  C  +   A  +   L    P + V +NP KPRRG FE+   R DG   
Sbjct:     4 EEATVVIEHCTSCRVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSSA 63

Query:   177 FISLLDMKRPFKPMKDLDMDEVVSDI 202
              +     K P + +K  +  EVV ++
Sbjct:    64 ELWTGIKKGPPRKLKFPEPQEVVEEL 89

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

ZFIN|ZDB-GENE-030411-2 seph "selenoprotein H" [Danio rerio (taxid:7955)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 32/95 (33%), Positives = 45/95 (47%)

Query:   115 DGDESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGG 174
             D DE     VVIEHCK    +   A  V++ L      + V++NP  PRR  FEI    G
Sbjct:    31 DKDEETGLRVVIEHCKSWRVYGRNAVVVREALADSHSELKVMINPHNPRRNSFEITLMDG 90

Query:   175 EKFISLLD--MKRPFKPMKDLDMDEVVSDIVAKLK 207
             E+   L     K P + +K  +  EVV+ +   L+
Sbjct:    91 ERADVLWSGIKKGPPRKLKFPEPAEVVTALKQALE 125

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

MGI|MGI:1919907 2700094K13Rik "RIKEN cDNA 2700094K13 gene" [Mus musculus (taxid:10090)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 28/83 (33%), Positives = 40/83 (48%)

Query:   123 TVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEI---REDGGEKFIS 179
             TVVIEHC     +   A  +   L+   P + V +NP KPRRG FE+   R D     + 
Sbjct:    29 TVVIEHCTSURVYGRHAAALSQALQLEAPELPVQVNPSKPRRGSFEVTLLRSDNSRVELW 88

Query:   180 LLDMKRPFKPMKDLDMDEVVSDI 202
                 K P + +K  +  EVV ++
Sbjct:    89 TGIKKGPPRKLKFPEPQEVVEEL 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      207       138   0.00091  102 3  11 23  0.49    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  518 (55 KB)
  Total size of DFA:  115 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  11.94u 0.07s 12.01t   Elapsed:  00:00:02
  Total cpu time:  11.94u 0.07s 12.01t   Elapsed:  00:00:03
  Start:  Sat May 11 01:43:52 2013   End:  Sat May 11 01:43:55 2013

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032342001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (154 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
TIGR02174	72	TIGR02174, CXXU_selWTH, selT/selW/selH selenoprote	3e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.001

>gnl|CDD|233762 TIGR02174, CXXU_selWTH, selT/selW/selH selenoprotein domain

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 124 VVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDG 173
           V +E+C  C  +K RA  +K  L +  P + +      P  G FE+  +G
Sbjct: 1   VEVEYCGSCG-YKPRAAWLKQELLEEFPDLEIEGENTPPTTGAFEVTVNG 49

This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam. Length = 72

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 19/71 (26%), Positives = 36/71 (50%)

Query: 53  TKNKKAKATGKKNKKKKKEDVKAEEEIEAEKVKVQEDVVEPETEEAEEEVEPDKEEAAGD 112
              K  K   K  KK+++E  + +++  A K K +E+  E E +E E+E E ++ E   +
Sbjct: 408 ATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKE 467

Query: 113 AFDGDESKERT 123
             +  + K+ T
Sbjct: 468 EEEEKKKKQAT 478

Length = 482

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
TIGR02174	72	CXXU_selWTH selT/selW/selH selenoprotein domain. T	99.76
PF10262	76	Rdx: Rdx family; InterPro: IPR011893 This entry re	99.66
COG3526	99	Uncharacterized protein conserved in bacteria [Pos	97.88
KOG3286	226	consensus Selenoprotein T [General function predic	97.16

>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain

Probab=99.76  E-value=2.4e-18  Score=124.56  Aligned_cols=71  Identities=27%  Similarity=0.396  Sum_probs=66.0

Q ss_pred             EEEcccccchhhHHhHHHHHHHHhccCCCcEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHHHHHH
Q 028564          124 VVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVVSDI  202 (207)
Q Consensus       124 VvIEhCksC~~FKrRA~eL~~aL~ea~P~~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~Vi~~I  202 (207)
                      |.||||.+|+ |+.||..|++.|+..||+..|.+++.+||+|+|||.++|.++|+.+.       ..+|||+++|++.|
T Consensus         1 V~IeyC~~C~-y~~Ra~~l~q~L~~~Fp~~~v~~~~~~~~~G~Fev~~~g~~v~sk~~-------~~~fp~~~~~~~~i   71 (72)
T TIGR02174         1 VEIEYCGSCG-YKPRAAWLKQELLEEFPDLEIEGENTPPTTGAFEVTVNGQLVWSKLR-------GGGFPEPEELKQLI   71 (72)
T ss_pred             CEEEECCCCC-ChHHHHHHHHHHHHHCCCCeeEEeeecCCCcEEEEEECCEEEEEecc-------CCCCCCHHHHHHhh
Confidence            6799999998 99999999999999999999999999999999999999978888887       57899999998876

This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.

>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life

Probab=99.66  E-value=1.3e-16  Score=115.44  Aligned_cols=73  Identities=32%  Similarity=0.468  Sum_probs=65.7

Q ss_pred             ceEEEcccccchhhHHhHHHHHHHHhccCCC--cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHHH
Q 028564          122 RTVVIEHCKQCNSFKTRANHVKDGLEKGVPG--INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVV  199 (207)
Q Consensus       122 ~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~--~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~Vi  199 (207)
                      ++|.||||.+|+ |..||..|.+.|...||+  ++|.++|  +++|+|||.++|.++|+.+.       ...|||.++|+
T Consensus         1 p~V~IeYC~~C~-~~~~a~~l~~~l~~~fp~~~~~v~~~~--~~~G~FEV~v~g~lI~SK~~-------~g~fP~~~~i~   70 (76)
T PF10262_consen    1 PKVTIEYCTSCG-YRPRALELAQELLQTFPDRIAEVELSP--GSTGAFEVTVNGELIFSKLE-------SGRFPDPDEIV   70 (76)
T ss_dssp             EEEEEEEETTTT-CHHHHHHHHHHHHHHSTTTCSEEEEEE--ESTT-EEEEETTEEEEEHHH-------HTSSS-HHHHH
T ss_pred             CEEEEEECCCCC-CHHHHHHHHHHHHHHCCCcceEEEEEe--ccCCEEEEEEccEEEEEehh-------cCCCCCHHHHH
Confidence            479999999997 999999999999999999  8999997  48999999999999999998       55999999999


Q ss_pred             HHHHH
Q 028564          200 SDIVA  204 (207)
Q Consensus       200 ~~I~~  204 (207)
                      +-|.+
T Consensus        71 ~~I~~   75 (76)
T PF10262_consen   71 QLIRD   75 (76)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98875

Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.

>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=6.3e-05  Score=58.95  Aligned_cols=76  Identities=22%  Similarity=0.304  Sum_probs=57.7

Q ss_pred             cceEEEcccccchhhHHhHHHHHHHHhccCCC-c-EEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHH
Q 028564          121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG-I-NVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEV  198 (207)
Q Consensus       121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~-~-qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~V  198 (207)
                      .+.|.|=||+||| +.-||.=+.+.|...|.+ + .|.+.|+  --|-|||+.+|   ...|-    .-+---||+...+
T Consensus         5 ~p~i~I~YCtQCn-WlLRa~WmaQElL~TF~~dlgeV~L~Pg--TGG~FeI~~dg---~~iWe----RKrdGGFP~ak~L   74 (99)
T COG3526           5 KPRIEITYCTQCN-WLLRAAWMAQELLSTFADDLGEVALIPG--TGGVFEITCDG---VLIWE----RKRDGGFPEAKVL   74 (99)
T ss_pred             CceEEEEEechhh-HHHHHHHHHHHHHHHHHhhhheEEEecC--CCceEEEEECC---EEEEE----eeccCCCCchHHH
Confidence            5789999999998 666777788888877744 4 7999987  56899999988   45555    1125678888888


Q ss_pred             HHHHHHhh
Q 028564          199 VSDIVAKL  206 (207)
Q Consensus       199 i~~I~~aL  206 (207)
                      -+-|.+.|
T Consensus        75 KQrvRD~i   82 (99)
T COG3526          75 KQRVRDLI   82 (99)
T ss_pred             HHHHHhhc
Confidence            77777654

>KOG3286 consensus Selenoprotein T [General function prediction only]

Probab=97.16  E-value=0.0016  Score=57.70  Aligned_cols=78  Identities=26%  Similarity=0.377  Sum_probs=64.1

Q ss_pred             cceEEEcccccchhhHHhHHHHHHHHhccCCCcEEEec-------------------------------C------CCC-
Q 028564          121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLN-------------------------------P------EKP-  162 (207)
Q Consensus       121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~~qV~IN-------------------------------p------~KP-  162 (207)
                      ++++.|=+|-+|+ ||.-+.+....|.+.|||++|..-                               |      +.| 
T Consensus        69 ~ptl~i~fCvSCg-Yk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~~P~  147 (226)
T KOG3286|consen   69 GPTLEINFCVSCG-YKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLGYPS  147 (226)
T ss_pred             CCcEEEEEEEecC-cHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCCCcH
Confidence            4679999999996 999999999999999999987642                               1      111 


Q ss_pred             ----------------------------CcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHHHHHHHHhh
Q 028564          163 ----------------------------RRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVVSDIVAKL  206 (207)
Q Consensus       163 ----------------------------RRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~Vi~~I~~aL  206 (207)
                                                  ..|+|||..+|-.+|++|.       .-++|-++++.+-|-+-|
T Consensus       148 iwqh~~aNkf~scm~vf~lGN~les~L~StGAFEI~lndepVwSKl~-------~gr~Ps~~el~qlid~~L  212 (226)
T KOG3286|consen  148 IWQHAQANKFYSCMMVFFLGNMLESQLISTGAFEITLNDEPVWSKLE-------SGRLPSPQELVQLIDNQL  212 (226)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcEEEEECCEeeeehhh-------ccCCCCHHHHHHHHHHhh
Confidence                                        3699999999878888888       889999999887766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2ljk_A	117	Protein C17ORF37; MIEN1, oncoprotein, signaling pr	99.63
2npb_A	96	Selenoprotein W; structure, thioredoxin-like fold,	99.59
2fa8_A	105	Hypothetical protein ATU0228; ALPH-beta structure,	99.56
2oka_A	104	Hypothetical protein; PAR82, NESG, structural geno	99.53
2p0g_A	105	Selenoprotein W-related protein; VCR75, structural	99.49
3dex_A	107	SAV_2001; alpha-beta protein, structural genomics,	99.42
2ojl_A	108	Hypothetical protein; BPR68, NESG, Q7WAF1, structu	99.4

>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}

Probab=99.63  E-value=6e-17  Score=127.69  Aligned_cols=76  Identities=21%  Similarity=0.322  Sum_probs=71.4

Q ss_pred             cceEEEcccccchhhHHhHHHHHHHHhccCCCcEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHHHH
Q 028564          121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGINVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVVS  200 (207)
Q Consensus       121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~Vi~  200 (207)
                      +++|.||||.+|+ |..||..|.+.|...||+++|.+.|+  +.|.|||.++|.++|+.+.       ...|||+++|++
T Consensus        24 ~vrV~IeYC~~C~-~~~ra~~laqeLl~tFp~~~V~l~pg--~~G~FeV~v~g~li~sk~~-------~g~FPe~~el~~   93 (117)
T 2ljk_A           24 GVRIVVEYCEPCG-FEATYLELASAVKEQYPGIEIESRLG--GTGAFEIEINGQLVFSKLE-------NGGFPYEKDLIE   93 (117)
T ss_dssp             SCCCEEEECTTTT-CHHHHHHHHHHHTTTCSSSCCEEEEC--SSSCEEEETTSSCCBCHHH-------HCSCCCTTTTTH
T ss_pred             CCeEEEEECCCCC-CHHHHHHHHHHHHhhCCcceEEEecC--CCceEEEEECCEEEEEEcc-------CCCCCCHHHHHH
Confidence            5789999999997 99999999999999999999999986  8999999999999999998       668999999999


Q ss_pred             HHHHhh
Q 028564          201 DIVAKL  206 (207)
Q Consensus       201 ~I~~aL  206 (207)
                      .|.+++
T Consensus        94 ~Vrd~~   99 (117)
T 2ljk_A           94 AIRRAS   99 (117)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            999876

>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}

Probab=99.59  E-value=2.8e-15  Score=114.15  Aligned_cols=78  Identities=18%  Similarity=0.273  Sum_probs=70.3

Q ss_pred             cceEEEcccccchhhHHhHHHHHHHHhccCCC-cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHHH
Q 028564          121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG-INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEVV  199 (207)
Q Consensus       121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~-~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~Vi  199 (207)
                      .++|.|+||.+|+ |..||..|.+.|...||+ +.|.+.......|+|||.++|.++|+.+.       ...|||.+++.
T Consensus         2 ~~~V~I~YC~~C~-y~~ra~~laqeLl~~Fp~~l~V~~~l~p~~~G~FEV~vng~lV~SKk~-------~ggFP~~~el~   73 (96)
T 2npb_A            2 ALAVRVVYSGACG-YKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSKKR-------GDGYVDTESKF   73 (96)
T ss_dssp             CEEEEEECCCCSC-HHHHHHHHHHHHHHHSBTTEEEEECCCSSCCSCCEEEETTEEEEETTT-------TCCSSCSHHHH
T ss_pred             CCEEEEEEcCCCC-CHHHHHHHHHHHHHhCCcceEEEEEEcCCCCcEEEEEECCEEEEEEec-------CCCCCChHHHH
Confidence            3679999999997 999999999999999999 77777776557899999999989999988       78899999999


Q ss_pred             HHHHHhh
Q 028564          200 SDIVAKL  206 (207)
Q Consensus       200 ~~I~~aL  206 (207)
                      +.|+++|
T Consensus        74 q~I~~~i   80 (96)
T 2npb_A           74 RKLVTAI   80 (96)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998876

>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23

Probab=99.56  E-value=2.1e-15  Score=116.81  Aligned_cols=76  Identities=24%  Similarity=0.271  Sum_probs=70.4

Q ss_pred             cceEEEcccccchhhHHhHHHHHHHHhccCCC--cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHH
Q 028564          121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG--INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEV  198 (207)
Q Consensus       121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~--~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~V  198 (207)
                      .++|.|+||.+|+ |..||..|.+.|...||+  .+|.+.|+  +.|+|||.++|.++|+.+.       ...|||.++|
T Consensus         7 ~~~V~I~YC~~C~-~~~Ra~~laqeLl~tF~~~l~~V~l~P~--~~G~FEV~vng~lV~SKk~-------~ggFPe~~el   76 (105)
T 2fa8_A            7 KPRIAIRYCTQCN-WLLRAGWMAQEILQTFASDIGEVSLIPS--TGGLFEITVDGTIIWERKR-------DGGFPGPKEL   76 (105)
T ss_dssp             CCEEEEEEETTTT-CHHHHHHHHHHHHHHHGGGCSEEEEEEE--CTTCEEEEETTEEEEEHHH-------HTSCCCHHHH
T ss_pred             CCEEEEEECCCCC-CHHHHHHHHHHHHHHcCcccceEEEEcC--CCcEEEEEECCEEEEEecc-------CCCCCCHHHH
Confidence            4789999999997 999999999999999998  58999987  8999999999989999988       6789999999


Q ss_pred             HHHHHHhh
Q 028564          199 VSDIVAKL  206 (207)
Q Consensus       199 i~~I~~aL  206 (207)
                      .+.|.++|
T Consensus        77 kq~Vr~~i   84 (105)
T 2fa8_A           77 KQRIRDLI   84 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999887

>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A

Probab=99.53  E-value=1.1e-14  Score=112.87  Aligned_cols=76  Identities=21%  Similarity=0.304  Sum_probs=70.6

Q ss_pred             cceEEEcccccchhhHHhHHHHHHHHhccCCC--cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHH
Q 028564          121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG--INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEV  198 (207)
Q Consensus       121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~--~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~V  198 (207)
                      .++|.|+||.+|+ |..||..|.+.|...||+  .+|.+-|+  ..|.|||.++|.++|+.+.       ...|||.++|
T Consensus         5 ~p~V~I~YC~~C~-~~~Ra~~laqeLl~tF~~~l~~v~l~P~--~~G~FEV~vng~lV~SKk~-------~ggFPe~~eL   74 (104)
T 2oka_A            5 KPEIVITYCTQCQ-WLLRAAWLAQELLSTFADDLGKVCLEPG--TGGVFRITCDGVQVWERKA-------DGGFPEAKAL   74 (104)
T ss_dssp             CCEEEEEEETTTT-CHHHHHHHHHHHHHHSTTTCSEEEEEEE--CTTCEEEEETTEEEEEHHH-------HTSCCCHHHH
T ss_pred             CCEEEEEECCCCC-ChHHHHHHHHHHHHHcCcccceEEEEeC--CCceEEEEECCEEEEEEec-------CCCCCCHHHH
Confidence            5889999999997 999999999999999999  68999987  7999999999999999998       5789999999


Q ss_pred             HHHHHHhh
Q 028564          199 VSDIVAKL  206 (207)
Q Consensus       199 i~~I~~aL  206 (207)
                      .+.|.++|
T Consensus        75 kq~Vrd~i   82 (104)
T 2oka_A           75 KQRVRDRI   82 (104)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}

Probab=99.49  E-value=2e-14  Score=111.52  Aligned_cols=76  Identities=20%  Similarity=0.259  Sum_probs=69.9

Q ss_pred             cceEEEcccccchhhHHhHHHHHHHHhccCCC--cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHH
Q 028564          121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG--INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEV  198 (207)
Q Consensus       121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~--~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~V  198 (207)
                      .++|.|+||.+|+ |..||..|.+.|...||+  .+|.+-|+  ..|.|||.++|.++|+.+.       ...|||.++|
T Consensus         3 ~~~V~I~YC~~C~-w~~Ra~~laqeLl~tF~~~l~~v~l~P~--~~G~FEV~vng~lV~SKk~-------~ggFPe~~eL   72 (105)
T 2p0g_A            3 KAQIEIYYCRQCN-WMLRSAWLSQELLHTFSEEIEYVALHPD--TGGRFEIFCNGVQIWERKQ-------EGGFPEAKVL   72 (105)
T ss_dssp             CEEEEEEEETTTT-CHHHHHHHHHHHHHHTTTTEEEEEEEEE--STTCEEEEETTEEEEEHHH-------HTSCCCHHHH
T ss_pred             CCEEEEEECCCCC-ChHHHHHHHHHHHHHcCcccceEEEEeC--CCceEEEEECCEEEEEEec-------CCCCCCHHHH
Confidence            4789999999997 999999999999999999  58888876  7999999999999999998       5789999999


Q ss_pred             HHHHHHhh
Q 028564          199 VSDIVAKL  206 (207)
Q Consensus       199 i~~I~~aL  206 (207)
                      .+.|.+.|
T Consensus        73 kq~Vrd~i   80 (105)
T 2p0g_A           73 KQRVRDLI   80 (105)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHHh
Confidence            99998876

>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0

Probab=99.42  E-value=1.5e-13  Score=107.24  Aligned_cols=78  Identities=21%  Similarity=0.251  Sum_probs=69.3

Q ss_pred             CCCcceEEEcccccchhhHHhHHHHHHHHhccCCCc--EEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCCh
Q 028564          118 ESKERTVVIEHCKQCNSFKTRANHVKDGLEKGVPGI--NVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDM  195 (207)
Q Consensus       118 ~p~~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~~--qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~  195 (207)
                      .|..++|.|+||.+|+ |..||..|.+.|...||+.  +|.+.|+  ..|.|||.++|.++|+...        ..|||.
T Consensus         9 ~~~~p~V~I~YC~~C~-w~lRa~~laqeLl~tF~~~l~eVsL~Pg--~gG~FeV~vdg~lVwsRk~--------gGFPd~   77 (107)
T 3dex_A            9 TPHTHRVQIEYCTQCR-WLPRAAWLAQELLTTFETELTELALKPG--TGGVFVVRVDDEVVWDRRE--------QGFPEP   77 (107)
T ss_dssp             --CCEEEEEEEETTTT-CHHHHHHHHHHHHHHSTTTEEEEEEEEE--SSSCEEEEETTEEEEEHHH--------HCSCCH
T ss_pred             CCCCCEEEEEECCCCC-ChHHHHHHHHHHHHhcccccceEEEEeC--CCceEEEEECCEEEEEecC--------CCCCCH
Confidence            3557899999999997 9999999999999999998  8999987  7999999999988888872        479999


Q ss_pred             HHHHHHHHHhh
Q 028564          196 DEVVSDIVAKL  206 (207)
Q Consensus       196 D~Vi~~I~~aL  206 (207)
                      .+|.+.|.+.|
T Consensus        78 keLkq~VRd~i   88 (107)
T 3dex_A           78 TAVKRLVRDRV   88 (107)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}

Probab=99.40  E-value=2.5e-13  Score=106.17  Aligned_cols=76  Identities=20%  Similarity=0.262  Sum_probs=69.4

Q ss_pred             cceEEEcccccchhhHHhHHHHHHHHhccCCC--cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHH
Q 028564          121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG--INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEV  198 (207)
Q Consensus       121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~--~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~V  198 (207)
                      .++|.|+||.+|+ |..||..|.+.|...||+  .+|.+-|+  ..|.|||.++|..+|+.+.       ...|||..+|
T Consensus         8 ~~~V~I~YC~~C~-w~lRa~~laqeLl~tF~~~l~eV~L~P~--~~G~FeV~vng~lVwsRk~-------~ggFPe~keL   77 (108)
T 2ojl_A            8 PPRIAIQYCTQCQ-WLLRAAWMAQELLSTFGADLGEVALVPG--TGGVFRIHYNGAPLWDREV-------DGGFPEAKVL   77 (108)
T ss_dssp             CCEEEEEEETTTT-CHHHHHHHHHHHHHHHGGGSSEEEEEEE--CTTCEEEEETTEEEEEHHH-------HCSCCCHHHH
T ss_pred             CCEEEEEECCCCC-ChHHHHHHHHHHHHhcCcccceEEEEeC--CCceEEEEECCEEEEEEcc-------CCCCCCHHHH
Confidence            5889999999997 999999999999999974  57999886  7999999999999999998       6889999999


Q ss_pred             HHHHHHhh
Q 028564          199 VSDIVAKL  206 (207)
Q Consensus       199 i~~I~~aL  206 (207)
                      .+.|.+.|
T Consensus        78 kq~Vrd~i   85 (108)
T 2ojl_A           78 KQRVRDHL   85 (108)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d2fa8a1	86	Hypothetical protein Atu0228 {Agrobacterium tumefa	99.53
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	89.31
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	87.53
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	80.11

>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Hypothetical protein Atu0228
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.53  E-value=3.5e-15  Score=110.78  Aligned_cols=76  Identities=24%  Similarity=0.271  Sum_probs=70.8

Q ss_pred             cceEEEcccccchhhHHhHHHHHHHHhccCCC--cEEEecCCCCCcceeEEEecCCeeEEEecCCCCCCCCCCCCChHHH
Q 028564          121 ERTVVIEHCKQCNSFKTRANHVKDGLEKGVPG--INVLLNPEKPRRGCFEIREDGGEKFISLLDMKRPFKPMKDLDMDEV  198 (207)
Q Consensus       121 ~~~VvIEhCksC~~FKrRA~eL~~aL~ea~P~--~qV~INp~KPRRGsFEV~i~gg~v~~sL~gMkRPf~kLKfPD~D~V  198 (207)
                      .++|.||||.+|+ |..||..|.+.|...||+  .+|++.|+  +.|.|||.++|.++|+.+.       ...|||..+|
T Consensus         2 kp~I~IeYC~~C~-w~~Ra~wlaqeLl~tF~~~i~evsL~P~--~~G~FeV~v~g~li~srk~-------~ggFPd~kel   71 (86)
T d2fa8a1           2 KPRIAIRYCTQCN-WLLRAGWMAQEILQTFASDIGEVSLIPS--TGGLFEITVDGTIIWERKR-------DGGFPGPKEL   71 (86)
T ss_dssp             CCEEEEEEETTTT-CHHHHHHHHHHHHHHHGGGCSEEEEEEE--CTTCEEEEETTEEEEEHHH-------HTSCCCHHHH
T ss_pred             CCeEEEEECCCCC-ChHHHHHHHHHHHHhCCccCceEEEEEC--CCeEEEEEECCEEEEEecc-------CCCCCCHHHH
Confidence            5789999999997 999999999999999999  69999987  7899999999999999998       5689999999


Q ss_pred             HHHHHHhh
Q 028564          199 VSDIVAKL  206 (207)
Q Consensus       199 i~~I~~aL  206 (207)
                      .+-|.+.|
T Consensus        72 kq~VRd~i   79 (86)
T d2fa8a1          72 KQRIRDLI   79 (86)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99999876

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=1  Score=29.81  Aligned_cols=46  Identities=20%  Similarity=0.330  Sum_probs=33.4

Q ss_pred             CCCCcceEEEc--ccccchhhHHhHHHHHHHHhccCCCc-EEEecCCCCCcceeEEEec
Q 028564          117 DESKERTVVIE--HCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKPRRGCFEIRED  172 (207)
Q Consensus       117 d~p~~~~VvIE--hCksC~~FKrRA~eL~~aL~ea~P~~-qV~INp~KPRRGsFEV~i~  172 (207)
                      -+-+..+|.|+  ||..|-      ..+.+.|. .+||+ .+.+|..   .|...|..+
T Consensus         5 ~~~~~~~l~V~gm~C~~C~------~~ie~~l~-~~~gv~~v~v~~~---~~~v~v~~d   53 (79)
T d1kvja_           5 MGVNSVTISVEGMTCNSCV------WTIEQQIG-KVNGVHHIKVSLE---EKNATIIYD   53 (79)
T ss_dssp             TTCEEEEEEEESCCSTHHH------HHHHHHHH-TTTTCSEEEEETT---TTEEEEEEC
T ss_pred             CCceEEEEEECCeecHHHH------HHHHHHHh-cCCCceEEEEECC---CCEEEEEEC
Confidence            34457889998  799995      77777777 45888 7888865   555666554

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=1.9  Score=28.88  Aligned_cols=46  Identities=13%  Similarity=0.268  Sum_probs=31.8

Q ss_pred             CCCCcceEEEc--ccccchhhHHhHHHHHHHHhccCCCc-EEEecCCCCCcceeEEEec
Q 028564          117 DESKERTVVIE--HCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKPRRGCFEIRED  172 (207)
Q Consensus       117 d~p~~~~VvIE--hCksC~~FKrRA~eL~~aL~ea~P~~-qV~INp~KPRRGsFEV~i~  172 (207)
                      .+.....|.|+  +|..|-      ..|.++|... ||+ .|.+|..   .|...|..+
T Consensus         6 ~~~~~v~l~V~GMtC~~C~------~~Ie~~l~~~-~GV~~v~vn~~---~~~v~v~~~   54 (84)
T d1q8la_           6 AGEVVLKMKVEGMTCHSCT------STIEGKIGKL-QGVQRIKVSLD---NQEATIVYQ   54 (84)
T ss_dssp             SSCEEEEEEECCTTTCSSC------HHHHHHHHTC-TTEEEEEECST---TTEEEEEEC
T ss_pred             CCCEEEEEEECCeEcHHHH------HHHHHHHhcC-CCceEEEEECC---CCEEceeec
Confidence            34447788898  799996      7777777755 887 6888864   444444443

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=80.11  E-value=3.1  Score=26.63  Aligned_cols=44  Identities=23%  Similarity=0.520  Sum_probs=30.9

Q ss_pred             CCcceEEEc--ccccchhhHHhHHHHHHHHhccCCCc-EEEecCCCCCcceeEEEec
Q 028564          119 SKERTVVIE--HCKQCNSFKTRANHVKDGLEKGVPGI-NVLLNPEKPRRGCFEIRED  172 (207)
Q Consensus       119 p~~~~VvIE--hCksC~~FKrRA~eL~~aL~ea~P~~-qV~INp~KPRRGsFEV~i~  172 (207)
                      .+..+|.|+  ||..|-      ..+.+.|... ||+ .|.+|..   .|...|..+
T Consensus         5 ~~~~~l~V~Gm~C~~C~------~~Ie~~l~~~-~gV~~v~v~~~---~~~~~v~~d   51 (72)
T d1p6ta1           5 QKEIAMQVSGMTCAACA------ARIEKGLKRM-PGVTDANVNLA---TETVNVIYD   51 (72)
T ss_dssp             CEEEEEEEESCCSSHHH------HHHHHHHTTS-SSEEEEEEEGG---GTEEEEEEC
T ss_pred             ceEEEEEECCeecHHHH------HHHHHHHHcC-CCcEEEEEEcC---CCEEEEEEC
Confidence            346778888  899995      7788888766 888 6888764   444445443