Citrus Sinensis ID: 028565

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
MGTPKRRLAVLSSHLLPTGPAPCSSSSGVSASFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICECSSKGQESSLS
ccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccEEEEcccEEEEEcccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEEcEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccc
cccHHHHHHHHHHHccccccccccccccccccccHccccccccccccccccEEEEEEccccccccccccEEEEcccEEEEEEccccccccEEEEEcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEEEEEcccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccc
MGTPKRRLAVLSshllptgpapcssssgvsasfCAQQrlshsqesghendcVFCKiirgespavKFCLLQLYEYdtclcildtnplslghslivpkshfscldatppsVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHthihiiprkahdclwtseslrrrplkidqETSQLADQVREKLSNicecsskgqessls
MGTPKRRLAVLSSHLLPTGPAPCSSSSGVSASFCAQQRLShsqesgheNDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESlrrrplkidqetsqLADQVREKLSnicecsskgqessls
MGTPKRRLAVLSSHLLPTGPAPCssssgvsasFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICECSSKGQESSLS
************************************************NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSE****************************************
*****RR***LSSHLL**********************************CVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESL*****KIDQETSQLADQVRE******************
MGTPKRRLAVLSSHLLPT****************************HENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICE***********
*****RR**VLSS*LLPTG****************************ENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNI*************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGTPKRRLAVLSSHLLPTGPAPCSSSSGVSASFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICECSSKGQESSLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query207 2.2.26 [Sep-21-2011]
Q11066144 Uncharacterized HIT-like yes no 0.594 0.854 0.390 2e-19
P94252139 Uncharacterized HIT-like yes no 0.594 0.884 0.368 5e-17
Q58276129 Uncharacterized HIT-like yes no 0.497 0.798 0.389 5e-17
O07513145 Protein hit OS=Bacillus s yes no 0.642 0.917 0.316 1e-16
P95937139 Uncharacterized HIT-like yes no 0.512 0.762 0.360 2e-16
O66536121 Uncharacterized HIT-like yes no 0.497 0.851 0.377 2e-13
Q04344158 Hit family protein 1 OS=S yes no 0.478 0.626 0.361 7e-13
O94586133 Hit family protein 1 OS=S yes no 0.473 0.736 0.364 1e-12
O07817107 Protein HitA OS=Neisseria yes no 0.478 0.925 0.372 3e-12
P73481114 Uncharacterized HIT-like N/A no 0.458 0.833 0.368 5e-12
>sp|Q11066|YHI2_MYCTU Uncharacterized HIT-like protein Rv1262c/MT1300 OS=Mycobacterium tuberculosis GN=Rv1262c PE=4 SV=2 Back     alignment and function desciption
 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 76/133 (57%), Gaps = 10/133 (7%)

Query: 51  CVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVV 110
           CVFC II GE+PA++     +YE    L ILD  P + GH+L++PK H   L  TPP  +
Sbjct: 3   CVFCAIIAGEAPAIR-----IYEDGGYLAILDIRPFTRGHTLVLPKRHTVDLTDTPPEAL 57

Query: 111 AAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSES-- 168
           A M A    I+ A      AD+ ++ +N+G AA Q +FH H+H++P +  D L  ++   
Sbjct: 58  ADMVAIGQRIARAARATKLADATHIAINDGRAAFQTVFHVHLHVLPPRNGDKLSVAKGMM 117

Query: 169 LRRRPLKIDQETS 181
           LRR P   D+E +
Sbjct: 118 LRRDP---DREAT 127

Mycobacterium tuberculosis (taxid: 1773)
>sp|P94252|YHIT_BORBU Uncharacterized HIT-like protein BB_0379 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=BB_0379 PE=4 SV=1 Back     alignment and function description
>sp|Q58276|Y866_METJA Uncharacterized HIT-like protein MJ0866 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0866 PE=4 SV=2 Back     alignment and function description
>sp|O07513|HIT_BACSU Protein hit OS=Bacillus subtilis (strain 168) GN=hit PE=1 SV=1 Back     alignment and function description
>sp|P95937|YHIT_SULSO Uncharacterized HIT-like protein SSO2163 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2163 PE=4 SV=1 Back     alignment and function description
>sp|O66536|YHIT_AQUAE Uncharacterized HIT-like protein aq_141 OS=Aquifex aeolicus (strain VF5) GN=aq_141 PE=4 SV=1 Back     alignment and function description
>sp|Q04344|HNT1_YEAST Hit family protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNT1 PE=1 SV=2 Back     alignment and function description
>sp|O94586|HNT1_SCHPO Hit family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hnt1 PE=3 SV=1 Back     alignment and function description
>sp|O07817|HITA_NEIGO Protein HitA OS=Neisseria gonorrhoeae GN=hitA PE=4 SV=1 Back     alignment and function description
>sp|P73481|YHIT_SYNY3 Uncharacterized HIT-like protein slr1234 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1234 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
255585620214 histidine triad (hit) protein, putative 0.966 0.934 0.633 4e-65
224069894190 predicted protein [Populus trichocarpa] 0.888 0.968 0.668 2e-64
118488050197 unknown [Populus trichocarpa] 0.695 0.730 0.771 1e-61
449458428208 PREDICTED: uncharacterized HIT-like prot 0.951 0.947 0.615 2e-61
297792041198 histidine triad family protein [Arabidop 0.898 0.939 0.647 3e-60
388507958220 unknown [Medicago truncatula] 0.898 0.845 0.623 6e-60
42573622197 protein histidine triad nucleotide-bindi 0.898 0.944 0.651 6e-60
356527308207 PREDICTED: uncharacterized HIT-like prot 0.937 0.937 0.626 6e-60
115487924225 Os12g0233300 [Oryza sativa Japonica Grou 0.864 0.795 0.504 2e-47
350537181150 histidine triad family protein [Solanum 0.690 0.953 0.668 2e-47
>gi|255585620|ref|XP_002533497.1| histidine triad (hit) protein, putative [Ricinus communis] gi|223526641|gb|EEF28884.1| histidine triad (hit) protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  253 bits (645), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 140/221 (63%), Positives = 156/221 (70%), Gaps = 21/221 (9%)

Query: 1   MGTPKRRLAVLSSHLLPTGP------------APCSSSSGVSASFCAQQRLSHS--QESG 46
           M    RRLAVLSSHL P               A  S  S +S S    +RLS    +   
Sbjct: 1   MEKQTRRLAVLSSHLCPIASFSGSGSGSGQDHASLSCYSCISDS--NNERLSSDSIEIEN 58

Query: 47  HENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATP 106
             +DCVFC+IIRGESPA K     LYE DTCLCILDT+PLS GHSLI+PKSH+  L+ATP
Sbjct: 59  QPHDCVFCRIIRGESPAFK-----LYEDDTCLCILDTSPLSHGHSLIIPKSHYPSLEATP 113

Query: 107 PSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 166
           PSVVAAMC+KVP I NAIM+AT +DSFNLLVNNGAAAGQVIFHTHIHIIPRK  DCLWTS
Sbjct: 114 PSVVAAMCSKVPFIGNAIMRATGSDSFNLLVNNGAAAGQVIFHTHIHIIPRKESDCLWTS 173

Query: 167 ESLRRRPLKIDQETSQLADQVREKLSNICECSSKGQESSLS 207
           ES++RRPL  D   SQL + VRE+LSNI E   KGQESSLS
Sbjct: 174 ESIQRRPLNFDHRASQLVNLVREQLSNISEDGGKGQESSLS 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224069894|ref|XP_002303075.1| predicted protein [Populus trichocarpa] gi|222844801|gb|EEE82348.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488050|gb|ABK95845.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449458428|ref|XP_004146949.1| PREDICTED: uncharacterized HIT-like protein Rv1262c/MT1300-like [Cucumis sativus] gi|449526732|ref|XP_004170367.1| PREDICTED: uncharacterized HIT-like protein Rv1262c/MT1300-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297792041|ref|XP_002863905.1| histidine triad family protein [Arabidopsis lyrata subsp. lyrata] gi|297309740|gb|EFH40164.1| histidine triad family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388507958|gb|AFK42045.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|42573622|ref|NP_974907.1| protein histidine triad nucleotide-binding 3 [Arabidopsis thaliana] gi|332008302|gb|AED95685.1| protein histidine triad nucleotide-binding 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356527308|ref|XP_003532253.1| PREDICTED: uncharacterized HIT-like protein BB_0379-like [Glycine max] Back     alignment and taxonomy information
>gi|115487924|ref|NP_001066449.1| Os12g0233300 [Oryza sativa Japonica Group] gi|77554082|gb|ABA96878.1| histidine triad family protein, putative, expressed [Oryza sativa Japonica Group] gi|108862373|gb|ABG21932.1| histidine triad family protein, putative, expressed [Oryza sativa Japonica Group] gi|113648956|dbj|BAF29468.1| Os12g0233300 [Oryza sativa Japonica Group] gi|125578908|gb|EAZ20054.1| hypothetical protein OsJ_35655 [Oryza sativa Japonica Group] gi|215764961|dbj|BAG86658.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|350537181|ref|NP_001234539.1| histidine triad family protein [Solanum lycopersicum] gi|51457954|gb|AAU03366.1| histidine triad family protein [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
TAIR|locus:1006230576197 HINT3 "histidine triad nucleot 0.898 0.944 0.651 1.5e-58
UNIPROTKB|Q81U41144 BAS0978 "HIT family protein" [ 0.652 0.937 0.340 4.6e-18
TIGR_CMR|BA_1047144 BA_1047 "HIT family protein" [ 0.652 0.937 0.340 4.6e-18
UNIPROTKB|Q71XE9140 LMOf2365_2249 "HIT family prot 0.502 0.742 0.394 1.2e-17
UNIPROTKB|G4NDS8137 MGG_00872 "Uncharacterized pro 0.473 0.715 0.411 1.4e-16
ASPGD|ASPL0000013360133 AN3708 [Emericella nidulans (t 0.473 0.736 0.401 3.7e-16
UNIPROTKB|Q5LTM7140 SPO1386 "HIT family protein" [ 0.507 0.75 0.383 2e-15
TIGR_CMR|SPO_1386140 SPO_1386 "HIT family protein" 0.507 0.75 0.383 2e-15
POMBASE|SPCC1442.14c133 SPCC1442.14c "adenosine 5'-mon 0.468 0.729 0.379 1.8e-14
UNIPROTKB|Q0BZV8144 HNE_2290 "Histidine triad fami 0.512 0.736 0.342 3e-14
TAIR|locus:1006230576 HINT3 "histidine triad nucleotide-binding 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 125/192 (65%), Positives = 139/192 (72%)

Query:     6 RRLAVLSSHLLPTGPAPCXXXXXXXXXFCAQQRLSHSQESGH-ENDCVFCKIIRGESPAV 64
             RRLA+L SHL P GP P            +        ES   +NDCVFCKIIRGESP  
Sbjct:     4 RRLAILCSHLNPPGPNPTRDPTLRVSDCSSGSSGDGKVESSTLQNDCVFCKIIRGESP-- 61

Query:    65 KFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAI 124
               CL +LYE D CLCILDTNPLS GHSLI+PK H+  L+ TPPSVVAAMC+KVPLISNAI
Sbjct:    62 --CL-KLYEDDMCLCILDTNPLSHGHSLIIPKLHYPTLEETPPSVVAAMCSKVPLISNAI 118

Query:   125 MKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLA 184
             +KAT +DSFNLLVNNGAAAGQVIFHTHIHIIPRK  DCLW SESLRR  LK+D+E SQL 
Sbjct:   119 VKATGSDSFNLLVNNGAAAGQVIFHTHIHIIPRKERDCLWASESLRRHSLKLDKEASQLV 178

Query:   185 DQVREKLSNICE 196
               VR  L ++ E
Sbjct:   179 SCVRRHLCSLPE 190
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005777 "peroxisome" evidence=IDA
GO:0006790 "sulfur compound metabolic process" evidence=IDA
GO:0009150 "purine ribonucleotide metabolic process" evidence=IDA
GO:0047627 "adenylylsulfatase activity" evidence=IDA
UNIPROTKB|Q81U41 BAS0978 "HIT family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1047 BA_1047 "HIT family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q71XE9 LMOf2365_2249 "HIT family protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|G4NDS8 MGG_00872 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000013360 AN3708 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LTM7 SPO1386 "HIT family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1386 SPO_1386 "HIT family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
POMBASE|SPCC1442.14c SPCC1442.14c "adenosine 5'-monophosphoramidase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q0BZV8 HNE_2290 "Histidine triad family protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011031001
SubName- Full=Chromosome undetermined scaffold_300, whole genome shotgun sequence; (195 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
cd01277103 cd01277, HINT_subgroup, HINT (histidine triad nucl 1e-42
COG0537138 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hy 1e-41
cd01276104 cd01276, PKCI_related, Protein Kinase C Interactin 2e-24
pfam0123097 pfam01230, HIT, HIT domain 3e-22
cd01275126 cd01275, FHIT, FHIT (fragile histidine family): FH 4e-19
pfam11969113 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme 2e-11
cd0046886 cd00468, HIT_like, HIT family: HIT (Histidine tria 3e-10
PRK10687119 PRK10687, PRK10687, purine nucleoside phosphoramid 8e-06
cd01278104 cd01278, aprataxin_related, aprataxin related: Apr 1e-05
>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information 
 Score =  138 bits (350), Expect = 1e-42
 Identities = 51/108 (47%), Positives = 67/108 (62%), Gaps = 5/108 (4%)

Query: 50  DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSV 109
           DC+FCKII GE P+ K     +YE D  L  LD NP S GH+L++PK H+  L    P  
Sbjct: 1   DCIFCKIIAGEIPSYK-----VYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEE 55

Query: 110 VAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPR 157
           +A +      ++ A+ KA  AD  N+L NNG AAGQV+FH H+H+IPR
Sbjct: 56  LAELILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHVIPR 103

This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression. Length = 103
>gnl|CDD|223611 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>gnl|CDD|216377 pfam01230, HIT, HIT domain Back     alignment and domain information
>gnl|CDD|238606 cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>gnl|CDD|221348 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding Back     alignment and domain information
>gnl|CDD|238263 cd00468, HIT_like, HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>gnl|CDD|182648 PRK10687, PRK10687, purine nucleoside phosphoramidase; Provisional Back     alignment and domain information
>gnl|CDD|238609 cd01278, aprataxin_related, aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 207
COG0537138 Hit Diadenosine tetraphosphate (Ap4A) hydrolase an 100.0
PRK10687119 purine nucleoside phosphoramidase; Provisional 99.97
cd01275126 FHIT FHIT (fragile histidine family): FHIT protein 99.97
cd01277103 HINT_subgroup HINT (histidine triad nucleotide-bin 99.97
cd01276104 PKCI_related Protein Kinase C Interacting protein 99.95
KOG3275127 consensus Zinc-binding protein of the histidine tr 99.94
PF0123098 HIT: HIT domain; InterPro: IPR001310 The Histidine 99.94
cd01278104 aprataxin_related aprataxin related: Aprataxin, a 99.93
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 99.92
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 99.92
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 99.92
cd0046886 HIT_like HIT family: HIT (Histidine triad) protein 99.91
KOG3379150 consensus Diadenosine polyphosphate hydrolase and 99.9
PLN02643336 ADP-glucose phosphorylase 99.89
PF11969116 DcpS_C: Scavenger mRNA decapping enzyme C-term bin 99.73
PF02744166 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf 99.66
COG1085338 GalT Galactose-1-phosphate uridylyltransferase [En 99.63
KOG4359166 consensus Protein kinase C inhibitor-like protein 99.58
PF04677121 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In 99.38
KOG2958354 consensus Galactose-1-phosphate uridylyltransferas 99.31
KOG2476528 consensus Uncharacterized conserved protein [Funct 98.94
KOG0562184 consensus Predicted hydrolase (HIT family) [Genera 98.17
KOG2477628 consensus Uncharacterized conserved protein [Funct 97.77
cd00608 329 GalT Galactose-1-phosphate uridyl transferase (Gal 97.61
PLN03103 403 GDP-L-galactose-hexose-1-phosphate guanyltransfera 97.47
KOG3969310 consensus Uncharacterized conserved protein [Funct 97.42
COG4360298 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr 97.34
PLN02643 336 ADP-glucose phosphorylase 97.32
COG1085 338 GalT Galactose-1-phosphate uridylyltransferase [En 97.29
PRK11720 346 galactose-1-phosphate uridylyltransferase; Provisi 96.96
TIGR00209 347 galT_1 galactose-1-phosphate uridylyltransferase, 96.53
KOG2720 431 consensus Predicted hydrolase (HIT family) [Genera 96.3
TIGR00672250 cdh CDP-diacylglycerol pyrophosphatase, bacterial 95.9
PRK05471252 CDP-diacylglycerol pyrophosphatase; Provisional 95.75
PF02611222 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: 94.82
COG2134252 Cdh CDP-diacylglycerol pyrophosphatase [Lipid meta 93.03
COG5075305 Uncharacterized conserved protein [Function unknow 91.6
PF01087183 GalP_UDP_transf: Galactose-1-phosphate uridyl tran 90.87
PF1339554 HNH_4: HNH endonuclease 89.63
PF11296275 DUF3097: Protein of unknown function (DUF3097); In 83.71
PRK05270 493 galactose-1-phosphate uridylyltransferase; Provisi 82.22
TIGR01239 489 galT_2 galactose-1-phosphate uridylyltransferase, 81.88
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=4.3e-35  Score=230.07  Aligned_cols=137  Identities=41%  Similarity=0.660  Sum_probs=126.0

Q ss_pred             CCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 028565           49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKAT  128 (207)
Q Consensus        49 ~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~  128 (207)
                      +.|+||+|+.++.|..+     |||++++++|+|.+|.++||+|||||+|+.++.+++++++.+++..++++++++++.+
T Consensus         1 ~~ciFc~ii~~e~~~~~-----Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~   75 (138)
T COG0537           1 MMCIFCKIIRGEIPANK-----VYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAF   75 (138)
T ss_pred             CCceeeeeecCCCCceE-----EEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            36999999999999887     9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCCHHHHHHHHHHHHHH
Q 028565          129 DADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKL  191 (207)
Q Consensus       129 ~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~~e~~ela~~lR~~l  191 (207)
                      ++++||+++|+|..+||.|+|+|+|||||+.+|..|+...|....... +++++++++|+++|
T Consensus        76 ~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~d~~~~~~~~~~~~~~~-~~l~~~~~~i~~~l  137 (138)
T COG0537          76 GADGYNIGINNGKAAGQEVFHLHIHIIPRYKGDDNFPGPGWGTKVEPN-EELEELAEKIRKAL  137 (138)
T ss_pred             CCCceEEEEecCcccCcCcceEEEEEcCCcCCCCCcccccccccCCcH-HHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999998877776522222 66999999999765

>PRK10687 purine nucleoside phosphoramidase; Provisional Back     alignment and domain information
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms] Back     alignment and domain information
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms [] Back     alignment and domain information
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only] Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B Back     alignment and domain information
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only] Back     alignment and domain information
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>KOG2476 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>KOG2477 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>KOG3969 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type Back     alignment and domain information
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional Back     alignment and domain information
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3 Back     alignment and domain information
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism] Back     alignment and domain information
>COG5075 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism Back     alignment and domain information
>PF13395 HNH_4: HNH endonuclease Back     alignment and domain information
>PF11296 DUF3097: Protein of unknown function (DUF3097); InterPro: IPR021447 This family of proteins with unknown function appears to be restricted to Actinobacteria Back     alignment and domain information
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
3o0m_A149 Crystal Structure Of A Zn-Bound Histidine Triad Fam 2e-22
3l7x_A173 The Crystal Structure Of Smu.412c From Streptococcu 2e-21
3imi_A147 2.01 Angstrom Resolution Crystal Structure Of A Hit 3e-19
2eo4_A149 Crystal Structure Of Hypothetical Histidine Triad N 3e-19
1y23_A145 Crystal Structure Of A Member Of Hit Family Of Prot 1e-17
3ksv_A149 Hypothetical Protein From Leishmania Major Length = 7e-16
3lb5_A161 Crystal Structure Of Hit-Like Protein Involved In C 3e-15
4egu_A119 0.95a Resolution Structure Of A Histidine Triad Pro 8e-12
3r6f_A135 Crystal Structure Of A Zinc-Containing Hit Family P 1e-11
1xqu_A147 Hit Family Hydrolase From Clostridium Thermocellum 1e-09
3o1x_A126 High Resolution Crystal Structure Of Histidine Tria 2e-09
1rzy_A126 Crystal Structure Of Rabbit Hint Complexed With N- 7e-09
3rhn_A115 Histidine Triad Nucleotide-Binding Protein (Hint) F 8e-09
3o1z_A126 High Resolution Crystal Structure Of Histidine Tria 1e-08
3oj7_A117 Crystal Structure Of A Histidine Triad Family Prote 4e-08
1kpa_A126 Pkci-1-Zinc Length = 126 5e-08
1kpb_A125 Pkci-1-Apo Length = 125 5e-08
3o1c_A126 High Resolution Crystal Structure Of Histidine Tria 5e-08
3tw2_A126 High Resolution Structure Of Human Histidine Triad 5e-08
4eqe_A128 Crystal Structure Of Histidine Triad Nucleotide-Bin 5e-08
3p0t_A138 Crystal Structure Of An Hit-Like Protein From Mycob 4e-06
1fhi_A147 Substrate Analog (Ib2) Complex With The Fragile His 8e-06
3fit_A147 Fhit (Fragile Histidine Triad Protein) In Complex W 1e-05
1ems_A440 Crystal Structure Of The C. Elegans Nitfhit Protein 3e-05
2fhi_A147 Substrate Analog (Ib2) Complex With The His 96 Asn 6e-05
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family Protein From Mycobacterium Smegmatis Length = 149 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 11/134 (8%)
Query: 51  CVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVV 110
           CVFC I+ G++PA++     +YE +  L ILD  P + GH+L++PK+H   L  TPP  V
Sbjct: 7   CVFCAIVSGDAPAIR-----IYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETV 61
Query: 111 AAMCAKVPLISNAIMKAT-DADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSES- 168
           A M A    I+ A  ++   AD  N+ +N+G AA Q +FH H+H++PR+  D L  ++  
Sbjct: 62  AGMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKGM 121
Query: 169 -LRRRPLKIDQETS 181
            +RR P   D+E S
Sbjct: 122 VMRRDP---DREES 132
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus Mutans Ua159 Length = 173 Back     alignment and structure
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family Protein From Bacillus Anthracis Str. 'ames Ancestor' Length = 147 Back     alignment and structure
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad Nucleotide-Binding Protein St2152 From Sulfolobus Tokodaii Strain7 Length = 149 Back     alignment and structure
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins From Bacillus Subtilis Length = 145 Back     alignment and structure
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major Length = 149 Back     alignment and structure
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In Cell-Cycle Regulation From Bartonella Henselae With Unknown Ligand Length = 161 Back     alignment and structure
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein From Clostridium Difficile Length = 119 Back     alignment and structure
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein From Encephalitozoon Cuniculi Length = 135 Back     alignment and structure
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393 Length = 147 Back     alignment and structure
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From Rabbit Complexed With Adenosine Length = 126 Back     alignment and structure
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N- Ethylsulfamoyladenosine Length = 126 Back     alignment and structure
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From Rabbit Complexed With Gmp Length = 115 Back     alignment and structure
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad Nucleotide- Binding Protein 1 (Hint1) Double Cysteine Mutant From Rabbit Length = 126 Back     alignment and structure
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound To Sulfate Length = 117 Back     alignment and structure
>pdb|1KPA|A Chain A, Pkci-1-Zinc Length = 126 Back     alignment and structure
>pdb|1KPB|A Chain A, Pkci-1-Apo Length = 125 Back     alignment and structure
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From Rabbit Complexed With Adenosine Length = 126 Back     alignment and structure
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad Nucleotide-binding Protein 1 (hhint1)/amp Complex In A Monoclinic Space Group Length = 126 Back     alignment and structure
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding Protein 1 (Hint1) From Human Complexed With Lys-Ams Length = 128 Back     alignment and structure
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From Mycobacterium Paratuberculosis Length = 138 Back     alignment and structure
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine Triad Protein, Fhit Length = 147 Back     alignment and structure
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With AdenosineSULFATE AMP ANALOG Length = 147 Back     alignment and structure
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440 Back     alignment and structure
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn Substitution Of The Fragile Histidine Triad Protein, Fhit Length = 147 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
2eo4_A149 150AA long hypothetical histidine triad nucleotid 5e-47
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 1e-45
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 7e-45
3imi_A147 HIT family protein; structural genomics, infectiou 3e-44
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 3e-43
3ksv_A149 Uncharacterized protein; HIT family, structural ge 4e-43
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 1e-41
3r6f_A135 HIT family protein; structural genomics, seattle s 2e-38
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 3e-36
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 1e-34
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 1e-31
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 7e-30
3oj7_A117 Putative histidine triad family protein; hydrolase 6e-25
4egu_A119 Histidine triad (HIT) protein; structural genomics 8e-25
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 2e-24
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 5e-24
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 5e-24
3nrd_A135 Histidine triad (HIT) protein; structural genomics 2e-17
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 8e-17
3ohe_A137 Histidine triad (HIT) protein; structural genomics 4e-16
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 3e-15
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 2e-11
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 3e-11
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Length = 149 Back     alignment and structure
 Score =  150 bits (381), Expect = 5e-47
 Identities = 52/144 (36%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 51  CVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVV 110
           C FC II  E          +YE +    ILD  P+SLGH+L++PK HF          +
Sbjct: 1   CTFCSIINRELEGYF-----VYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTL 55

Query: 111 AAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLR 170
           A +   V L+S  I  A  AD   LL N G +AGQVIFH H+HIIP    D     +S +
Sbjct: 56  AELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDIFKSFK 115

Query: 171 RRPLKIDQETSQLADQVREKLSNI 194
            R  +  +    L   +RE + N+
Sbjct: 116 PRKEQEKEYYELLQKIIRESIENL 139
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Length = 173 Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Length = 145 Back     alignment and structure
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} Length = 147 Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Length = 161 Back     alignment and structure
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} Length = 149 Back     alignment and structure
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Length = 149 Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Length = 135 Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Length = 138 Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Length = 147 Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Length = 218 Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Length = 154 Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} PDB: 3omf_A* 3oxk_A* Length = 117 Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Length = 119 Back     alignment and structure
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB: 3n1t_A* Length = 119 Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Length = 147 Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Length = 126 Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Length = 135 Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Length = 149 Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Length = 137 Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Length = 149 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Length = 204 Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Length = 351 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
3ksv_A149 Uncharacterized protein; HIT family, structural ge 100.0
3imi_A147 HIT family protein; structural genomics, infectiou 100.0
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 100.0
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 100.0
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 100.0
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 100.0
2eo4_A149 150AA long hypothetical histidine triad nucleotid 100.0
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 100.0
3r6f_A135 HIT family protein; structural genomics, seattle s 100.0
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 99.98
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 99.97
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 99.97
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 99.97
3oj7_A117 Putative histidine triad family protein; hydrolase 99.97
4egu_A119 Histidine triad (HIT) protein; structural genomics 99.97
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 99.97
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 99.96
3ohe_A137 Histidine triad (HIT) protein; structural genomics 99.96
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 99.95
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 99.95
3nrd_A135 Histidine triad (HIT) protein; structural genomics 99.94
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 99.93
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 99.93
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 99.92
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 99.49
1z84_A 351 Galactose-1-phosphate uridyl transferase-like prot 98.85
3bl9_A301 Scavenger mRNA-decapping enzyme DCPS; ligand compl 98.8
1vlr_A350 MRNA decapping enzyme; 16740816, structural genomi 98.75
1gup_A 348 Galactose-1-phosphate uridylyltransferase; nucleot 97.2
2pof_A227 CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM0 95.77
2qgp_A112 HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru 87.53
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0 Back     alignment and structure
Probab=100.00  E-value=2.5e-37  Score=244.37  Aligned_cols=139  Identities=33%  Similarity=0.556  Sum_probs=127.5

Q ss_pred             CCCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028565           48 ENDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKA  127 (207)
Q Consensus        48 ~~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~  127 (207)
                      ..+|+||+|+++++|..+     |||+++|+||+|.+|.+|||+||+||+|+.++.+|+++++.+|+.+++++++++++.
T Consensus        10 ~~~~iFc~Ii~geip~~i-----V~ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~   84 (149)
T 3ksv_A           10 AANCIFCKIIKGDIPCAK-----VAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGP   84 (149)
T ss_dssp             CTTCHHHHHHHTSSCCCE-----EEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cccCHHHHHHcCCCCccE-----EEECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence            357999999999999876     999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHHhcc
Q 028565          128 TDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKLSNI  194 (207)
Q Consensus       128 ~~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~-~e~~ela~~lR~~l~~~  194 (207)
                      +++++||+++|+|+.+||+++|+|+|||||+.+|.+|+. .|.  +..++ +++++++++||++|+++
T Consensus        85 ~~~~g~ni~~n~g~~aGq~v~HlHiHiiPR~~~d~g~~~-~w~--~~~~~~~~l~~~~~~lr~~l~~~  149 (149)
T 3ksv_A           85 DGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKI-GWD--TVKVASDELAEDAKRYSEAIAKI  149 (149)
T ss_dssp             TSCCEEEEEECCSTTTTCCSSSCCEEEEEECCTTSSCCC-CCC--CCCCCHHHHHHHHHHHHHHHHTC
T ss_pred             hCCCCEEEEEecCcccCCCCCEEEEEEEecccCCCCccc-CCC--CCCCCHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999988863 454  23344 57999999999999875
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1 Back     alignment and structure
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Back     alignment and structure
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Back     alignment and structure
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Back     alignment and structure
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A* Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A* Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Back     alignment and structure
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 207
d1kpfa_111 d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 1e-28
d1y23a_139 d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423] 8e-27
d1emsa1160 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-te 4e-25
d1xqua_113 d.13.1.1 (A:) Putative hydrolase {Clostridium ther 1e-24
d1fita_146 d.13.1.1 (A:) FHIT (fragile histidine triad protei 7e-21
d2oika1139 d.13.1.1 (A:6-144) Histidine triad protein Mfla250 2e-20
d1z84a2156 d.13.1.2 (A:196-351) Galactose-1-phosphate uridyly 1e-18
d1guqa2171 d.13.1.2 (A:178-348) Galactose-1-phosphate uridyly 1e-14
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 1e-28
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 50  DCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSV 109
           D +F KIIR E PA       ++E D CL   D +P +  H L++PK H S +       
Sbjct: 1   DTIFGKIIRKEIPAKI-----IFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDD 55

Query: 110 VAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRK 158
            + +   + +             + ++VN G+  GQ ++H H+H++  +
Sbjct: 56  ESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGR 104
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Length = 139 Back     information, alignment and structure
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 160 Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Length = 113 Back     information, alignment and structure
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Length = 139 Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 156 Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
d1y23a_139 Hit {Bacillus subtilis [TaxId: 1423]} 100.0
d2oika1139 Histidine triad protein Mfla2506 {Methylobacillus 100.0
d1emsa1160 NIT-FHIT fusion protein, C-terminal domain {Nemato 99.98
d1kpfa_111 Protein kinase C inhibitor-1, PKCI-1 {Human (Homo 99.97
d1xqua_113 Putative hydrolase {Clostridium thermocellum [TaxI 99.97
d1fita_146 FHIT (fragile histidine triad protein) {Human (Hom 99.97
d1guqa2171 Galactose-1-phosphate uridylyltransferase {Escheri 99.94
d1z84a2156 Galactose-1-phosphate uridylyltransferase {Thale c 99.94
d1vlra1192 mRNA decapping enzyme DcpS C-terminal domain {Mous 99.18
d1z84a1173 Galactose-1-phosphate uridylyltransferase {Thale c 98.13
d1guqa1176 Galactose-1-phosphate uridylyltransferase {Escheri 97.68
d2pofa1220 CDP-diacylglycerol pyrophosphatase CDH {Escherichi 96.16
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.4e-38  Score=241.15  Aligned_cols=138  Identities=30%  Similarity=0.585  Sum_probs=124.5

Q ss_pred             CCccccccccCCCCccccceeeEEECCeEEEEEcCCCCCceEEEEEecCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 028565           49 NDCVFCKIIRGESPAVKFCLLQLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKAT  128 (207)
Q Consensus        49 ~~C~FC~ii~~e~~~~~~~~~iV~e~e~~~a~l~~~p~~~GH~LViPkrHv~~l~dL~~ee~~el~~~~~~v~~~l~~~~  128 (207)
                      ++|+||+|+++++|..+     |||+++++||+|.+|.++||+||+||+|+.++.+|+++++.+++..+.++++++++.+
T Consensus         1 e~CiFC~I~~~e~p~~~-----i~ede~~~af~d~~P~~~GH~LViPk~H~~~~~dL~~~~~~~l~~~~~~~~~~l~~~~   75 (139)
T d1y23a_           1 ENCIFCKIIAGDIPSAK-----VYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEF   75 (139)
T ss_dssp             CCCHHHHHHHTSSCCCE-----EEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             CcCccCccccCCCCccE-----EEECCCEEEEecCCCCCCcEEEEEEecccccccccchHHHHHHHHHHHHHHHHHhhhc
Confidence            57999999999999877     9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEecCCCCCCccCeEEEEEecccCCCCCCccccccCCCCCCC-HHHHHHHHHHHHHHh
Q 028565          129 DADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKID-QETSQLADQVREKLS  192 (207)
Q Consensus       129 ~~~~~ni~~n~g~~~gq~v~HlHlHVIPR~~~d~~w~~~~~~~~~~~~~-~e~~ela~~lR~~l~  192 (207)
                      ++++||+++|+|+.+||+|+|+|+|||||+.++..|.. .|.......+ +++++++++||++|.
T Consensus        76 ~~~g~~i~~n~g~~agq~v~H~H~HviPR~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~i~~~Ls  139 (139)
T d1y23a_          76 EPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGA-VWKTHADDYKPEDLQNISSSIAKRLA  139 (139)
T ss_dssp             CCSEEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEEE-EECCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             ccCCcEEEeCCCccccEecCEEEEEEEccccCCCCccc-ccccCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999987776643 3443333344 569999999999874
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Back     information, alignment and structure
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure