Citrus Sinensis ID: 028577

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYDDGGDDRDLDIDRRSARSFPRRRDDFFSDVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD
cccHHHHHHHccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccEEEEEcccEEEEEEEccccccccEEEEEEccEEEEEEEEccEEEEEccEEEEEEEEEccccccccccEEEEEcccEEEEEcccccccccccEEEEEcc
ccHHHHHHHcccccccHHHccccccHHHHccccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEccccEEEEEEEccccccccEEEEEEccEEEEEcccccccccccccccEEEEEEccccHcHHHHEEEEEcccEEEEEEccccccccccEEEEEEc
MASSLALKRLVsfnlipralrctvapsatsasrffntnavrqyddggddrdldidrrsarsfprrrddffsdvfdpfsptrsLSQVLNFMDqmtespffsgtrgglrrgwdaketddalnlsidmpglgkedVRVSLEQNTLvirgeggkegegeesvrrytsridlpeklyrTDQIKAEMKNGVlkvtvpkvkeeeradvfqvkvd
MASSLALKRLVSFNLIPRALRCTVApsatsasrffntnavrqyddggddrdldidrrsarsfprrrddffsdvfdpfspTRSLSQVLNFMDQMTESPffsgtrgglrrgwDAKETDDALNLSIDMPGLGKEDVRVSLEQNtlvirgeggkegegeesvrrytsridlpeklyrtdqikaemkngvlkvtvpkvkeeeradvfqvkvd
MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYddggddrdldidrrsarsfprrrddffsdvfdpfspTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRgeggkegegeeSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD
******LKRLVSFNLIPRALRCTVAPSATSASRFFNTNAV*****************************F*DVF***********VLNFM*******FF******LRRGW**********L*I******************LV***************************LYR***I******GVLKVT******************
***S****************************************************************FFSDVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI****************YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK*********FQVKVD
MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYDDGGDDRDLDIDRRSARSFPRRRDDFFSDVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE************RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD
*******************************************************************DFFSDVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEG********SVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYDDGGDDRDLDIDRRSARSFPRRRDDFFSDVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query207 2.2.26 [Sep-21-2011]
P46254202 Heat shock 22 kDa protein N/A no 0.956 0.980 0.639 2e-62
Q96331210 23.6 kDa heat shock prote yes no 0.971 0.957 0.615 3e-61
Q9FGM9210 23.5 kDa heat shock prote no no 0.961 0.947 0.584 3e-59
Q39818211 Heat shock 22 kDa protein yes no 0.946 0.928 0.549 2e-52
P11890204 Small heat shock protein, N/A no 0.946 0.960 0.547 3e-50
Q6Z7V2220 24.1 kDa heat shock prote yes no 0.966 0.909 0.488 2e-37
Q67X83248 26.2 kDa heat shock prote no no 0.816 0.681 0.479 2e-33
P31170227 25.3 kDa heat shock prote no no 0.637 0.581 0.423 2e-23
P30222241 Small heat shock protein, N/A no 0.637 0.547 0.377 8e-22
P09887181 Small heat shock protein, no no 0.637 0.729 0.388 1e-20
>sp|P46254|HS22M_PEA Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1 Back     alignment and function desciption
 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 135/211 (63%), Positives = 159/211 (75%), Gaps = 13/211 (6%)

Query: 1   MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYDDGGDDRDLDIDRRSAR 60
           MASSLALKR +S           + P A+SASR FNTNA+RQYD   DDR++D+ R S  
Sbjct: 1   MASSLALKRFLSSG---LLSSSFLRPVASSASRSFNTNAMRQYDQHSDDRNVDVYRHS-- 55

Query: 61  SFPR-RRDDFF-SDVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDA 118
            FPR RRDD   SDVFDPFSP RSLSQVLN +D +T++P  S      RRGWDA+ET+DA
Sbjct: 56  -FPRTRRDDLLLSDVFDPFSPPRSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDA 111

Query: 119 LNLSIDMPGLGKEDVRVSLEQNTLVIRGE-GGKEGE-GEESVRRYTSRIDLPEKLYRTDQ 176
           L L +DMPGLGKEDV++S+EQNTL I+GE G KE E  E+S RR++SRIDLPEKLY+ D 
Sbjct: 112 LFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLYKIDV 171

Query: 177 IKAEMKNGVLKVTVPKVKEEERADVFQVKVD 207
           IKAEMKNGVLKVTVPK+KEEER +V  VKVD
Sbjct: 172 IKAEMKNGVLKVTVPKMKEEERNNVINVKVD 202

Pisum sativum (taxid: 3888)
>sp|Q96331|HS23M_ARATH 23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGM9|HS235_ARATH 23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1 Back     alignment and function description
>sp|Q39818|HS22M_SOYBN Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1 Back     alignment and function description
>sp|P11890|HS23C_CHERU Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z7V2|HS24M_ORYSJ 24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1 Back     alignment and function description
>sp|Q67X83|HS26M_ORYSJ 26.2 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP26.2 PE=2 SV=1 Back     alignment and function description
>sp|P31170|HS25P_ARATH 25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1 Back     alignment and function description
>sp|P30222|HS22C_PETHY Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1 Back     alignment and function description
>sp|P09887|HS22C_SOYBN Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
372477638214 mitochondrial heat shock protein [Copaif 0.985 0.953 0.691 2e-67
189014946174 small heat shock protein [Mangifera indi 0.840 1.0 0.797 3e-66
339792764209 hsp23 [Medicago sativa] 0.975 0.966 0.654 9e-66
388512007209 unknown [Medicago truncatula] 0.980 0.971 0.638 3e-65
297803604211 hypothetical protein ARALYDRAFT_492313 [ 0.971 0.952 0.622 6e-64
2326354210 LMW heat shock protein [Arabidopsis thal 0.971 0.957 0.620 7e-64
224071519213 predicted protein [Populus trichocarpa] 0.995 0.967 0.700 1e-61
1170368202 RecName: Full=Heat shock 22 kDa protein, 0.956 0.980 0.639 1e-60
15234969210 small heat shock protein 23.6 [Arabidops 0.971 0.957 0.615 1e-59
297792451212 hypothetical protein ARALYDRAFT_495215 [ 0.961 0.938 0.615 1e-59
>gi|372477638|gb|AEX97054.1| mitochondrial heat shock protein [Copaifera officinalis] Back     alignment and taxonomy information
 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 148/214 (69%), Positives = 173/214 (80%), Gaps = 10/214 (4%)

Query: 2   ASSLALKRLVSFN--LIPRALRCTVAPSATSASRFFNTNAVRQYDDGGDDRDLDIDRRSA 59
           ++SLALKRL+     +  R+L  TV P   SASR FNTNA+R YDDG + R LD+DRRS 
Sbjct: 3   SASLALKRLLYSGPAISSRSLIRTV-PRMVSASRSFNTNAMRDYDDG-NGRSLDVDRRSD 60

Query: 60  RSFPR--RRDDFFSDVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAK 113
           RS PR  RRDD F DVFDPFSPTRSLSQVLN MDQ  ++PF S +RG    GLRRGWDAK
Sbjct: 61  RSVPRGDRRDDLFPDVFDPFSPTRSLSQVLNLMDQFVDNPFLSASRGIGAGGLRRGWDAK 120

Query: 114 ETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYR 173
           ET+DAL L +DMPGLGK+DV+VS+EQNTL+I+GEGGKE   E+S RRY+SRIDLPEKLY+
Sbjct: 121 ETEDALFLRVDMPGLGKDDVKVSVEQNTLIIKGEGGKEEGEEDSARRYSSRIDLPEKLYK 180

Query: 174 TDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 207
            DQIKAEMKNGVLKV VPK+KEE+R+DV+QVKVD
Sbjct: 181 IDQIKAEMKNGVLKVVVPKMKEEDRSDVYQVKVD 214

Source: Copaifera officinalis

Species: Copaifera officinalis

Genus: Copaifera

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|189014946|gb|ACD69682.1| small heat shock protein [Mangifera indica] Back     alignment and taxonomy information
>gi|339792764|gb|AEK12766.1| hsp23 [Medicago sativa] Back     alignment and taxonomy information
>gi|388512007|gb|AFK44065.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297803604|ref|XP_002869686.1| hypothetical protein ARALYDRAFT_492313 [Arabidopsis lyrata subsp. lyrata] gi|297315522|gb|EFH45945.1| hypothetical protein ARALYDRAFT_492313 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|2326354|emb|CAA67022.1| LMW heat shock protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224071519|ref|XP_002303499.1| predicted protein [Populus trichocarpa] gi|222840931|gb|EEE78478.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|1170368|sp|P46254.1|HS22M_PEA RecName: Full=Heat shock 22 kDa protein, mitochondrial; Flags: Precursor gi|773581|emb|CAA60120.1| heat shock protein [Pisum sativum] Back     alignment and taxonomy information
>gi|15234969|ref|NP_194250.1| small heat shock protein 23.6 [Arabidopsis thaliana] gi|3122232|sp|Q96331.1|HS23M_ARATH RecName: Full=23.6 kDa heat shock protein, mitochondrial; Short=AtHsp23.6; Flags: Precursor gi|1669866|gb|AAB38795.1| AtHSP23.6-mito [Arabidopsis thaliana] gi|4454008|emb|CAA23061.1| Arabidopsis mitochondrion-localized small heat shock protein (AtHSP23.6-mito) [Arabidopsis thaliana] gi|7269370|emb|CAB79429.1| Arabidopsis mitochondrion-localized small heat shock protein (AtHSP23.6-mito) [Arabidopsis thaliana] gi|26453231|dbj|BAC43689.1| putative mitochondrion-localized small heat shock protein [Arabidopsis thaliana] gi|28950739|gb|AAO63293.1| At4g25200 [Arabidopsis thaliana] gi|222424012|dbj|BAH19967.1| AT4G25200 [Arabidopsis thaliana] gi|332659624|gb|AEE85024.1| small heat shock protein 23.6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297792451|ref|XP_002864110.1| hypothetical protein ARALYDRAFT_495215 [Arabidopsis lyrata subsp. lyrata] gi|297309945|gb|EFH40369.1| hypothetical protein ARALYDRAFT_495215 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
TAIR|locus:2163670210 AT5G51440 "AT5G51440" [Arabido 0.618 0.609 0.611 4.7e-46
TAIR|locus:2122649210 HSP23.6-MITO "AT4G25200" [Arab 0.618 0.609 0.580 3.7e-44
UNIPROTKB|Q6Z7V2220 HSP24.1 "24.1 kDa heat shock p 0.608 0.572 0.527 7.9e-33
UNIPROTKB|Q67X83248 HSP26.2 "26.2 kDa heat shock p 0.608 0.508 0.496 2.8e-27
TAIR|locus:2137762227 HSP21 "AT4G27670" [Arabidopsis 0.599 0.546 0.389 1.4e-18
UNIPROTKB|Q10P60240 HSP26.7 "26.7 kDa heat shock p 0.599 0.516 0.326 2.4e-12
TAIR|locus:2042977153 AT2G29500 "AT2G29500" [Arabido 0.454 0.614 0.361 1.1e-09
UNIPROTKB|Q84Q72161 HSP18.1 "18.1 kDa class I heat 0.473 0.608 0.387 3.6e-09
UNIPROTKB|P31673154 HSP17.4 "17.4 kDa class I heat 0.473 0.636 0.378 5.9e-09
TAIR|locus:2024997157 AT1G07400 [Arabidopsis thalian 0.458 0.605 0.339 7.6e-09
TAIR|locus:2163670 AT5G51440 "AT5G51440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 405 (147.6 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
 Identities = 82/134 (61%), Positives = 103/134 (76%)

Query:    80 TRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRV 135
             TRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV++
Sbjct:    77 TRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKL 136

Query:   136 SLEQNTLVIRXXXXXXXXXXXSV--RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 193
             +LEQNTLVIR           S   RR+TSRI+LPEK+Y+TD+IKAEMKNGVLKV +PK+
Sbjct:   137 ALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKI 196

Query:   194 KEEERADVFQVKVD 207
             KE+ER ++  + VD
Sbjct:   197 KEDERNNIRHINVD 210
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0009408 "response to heat" evidence=ISS;RCA
GO:0006457 "protein folding" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2122649 HSP23.6-MITO "AT4G25200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z7V2 HSP24.1 "24.1 kDa heat shock protein, mitochondrial" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q67X83 HSP26.2 "26.2 kDa heat shock protein, mitochondrial" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2137762 HSP21 "AT4G27670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q10P60 HSP26.7 "26.7 kDa heat shock protein, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2042977 AT2G29500 "AT2G29500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q84Q72 HSP18.1 "18.1 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P31673 HSP17.4 "17.4 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2024997 AT1G07400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96331HS23M_ARATHNo assigned EC number0.61570.97100.9571yesno
P46254HS22M_PEANo assigned EC number0.63980.95650.9801N/Ano
Q6Z7V2HS24M_ORYSJNo assigned EC number0.48890.96610.9090yesno
Q39818HS22M_SOYBNNo assigned EC number0.54950.94680.9289yesno
P11890HS23C_CHERUNo assigned EC number0.54710.94680.9607N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.7__1746__AT4G25200.1
annotation not avaliable (211 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
Al_scaffold_0001_587
annotation not avaliable (284 aa)
  •     0.427

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 3e-21
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 5e-21
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 5e-21
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 2e-18
cd0647292 cd06472, ACD_ScHsp26_like, Alpha crystallin domain 6e-18
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 2e-13
cd0652683 cd06526, metazoan_ACD, Alpha-crystallin domain (AC 2e-05
cd0647090 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain 2e-04
cd0646384 cd06463, p23_like, Proteins containing this p23_li 0.001
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information 
 Score = 83.8 bits (208), Expect = 3e-21
 Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 7/96 (7%)

Query: 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEE------SVRRYTSR 164
           D KE  DA  + +D+PG   E+++V +E N ++++G+  KE E +       S R ++ +
Sbjct: 1   DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRK 60

Query: 165 IDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERAD 200
             LPE     D++KA +K+GVL VTVPK++  E+  
Sbjct: 61  FVLPEN-ADPDKVKASLKDGVLTVTVPKLEPPEKKP 95

Length = 101
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 207
PRK10743137 heat shock protein IbpA; Provisional 99.93
PRK11597142 heat shock chaperone IbpB; Provisional 99.93
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.92
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.88
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.88
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.87
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.86
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.86
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.86
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.86
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.85
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.85
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.85
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.83
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.82
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.81
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.8
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.79
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.75
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.71
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.63
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.57
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.31
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 99.07
cd0646384 p23_like Proteins containing this p23_like domain 99.03
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.81
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.54
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 98.16
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 98.07
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 98.03
cd0646892 p23_CacyBP p23_like domain found in proteins simil 97.9
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 97.87
cd0648887 p23_melusin_like p23_like domain similar to the C- 97.79
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 97.68
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 97.41
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 97.3
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 96.68
KOG1309 196 consensus Suppressor of G2 allele of skp1 [Signal 96.26
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 96.14
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 96.11
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 96.1
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 86.63
KOG2265179 consensus Nuclear distribution protein NUDC [Signa 82.3
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information 
Probab=99.93  E-value=1.2e-25  Score=177.13  Aligned_cols=116  Identities=16%  Similarity=0.324  Sum_probs=88.4

Q ss_pred             HHHHHHHhhcCCCCCCCCC-CccceeeEEE-cCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc------cee
Q 028577           86 VLNFMDQMTESPFFSGTRG-GLRRGWDAKE-TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG------EES  157 (207)
Q Consensus        86 l~~~md~~~~~~~~~~~~~-~~~p~~di~e-~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~------e~~  157 (207)
                      +...|+++|+..+.....+ +..|++||++ ++++|.|+++|||++|+||+|++++|.|+|+|+++.+.++      |+.
T Consensus        12 ~~~~~d~lf~~~~~~~~~~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~   91 (137)
T PRK10743         12 SAIGFDRLFNLLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIA   91 (137)
T ss_pred             cccCHHHHhhhhhhhhhcccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEE
Confidence            3344555555444322111 2348999995 8999999999999999999999999999999997654333      345


Q ss_pred             eeEEEEEEECCCCCCCCCceEEEEeCCEEEEEEeCcCcc-cCCceeEe
Q 028577          158 VRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE-ERADVFQV  204 (207)
Q Consensus       158 ~~~f~r~i~LP~~v~d~~~ikA~~~nGvL~I~lPK~~~~-~~~~~i~I  204 (207)
                      +++|+|+|.||.+| +.+  +|+|+||||+|+|||.+++ .+++.|.|
T Consensus        92 ~g~F~R~~~LP~~V-d~~--~A~~~dGVL~I~lPK~~~~~~~~r~I~I  136 (137)
T PRK10743         92 ERNFERKFQLAENI-HVR--GANLVNGLLYIDLERVIPEAKKPRRIEI  136 (137)
T ss_pred             CCEEEEEEECCCCc-ccC--cCEEeCCEEEEEEeCCCccccCCeEEee
Confidence            67999999999999 888  5999999999999997433 33445554

>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 4e-27
1gme_A151 Heat shock protein 16.9B; small heat shock protein 6e-25
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 3e-24
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 5e-23
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 8e-15
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 3e-13
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 4e-13
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 1e-12
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 4e-12
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 1e-09
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
 Score =  100 bits (250), Expect = 4e-27
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 11/153 (7%)

Query: 62  FPRRRDDFFSDVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNL 121
           F R   +FF+      +  +S + +     +           G         E D  + +
Sbjct: 11  FERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKV 70

Query: 122 SIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEES------VRRYTS---RIDLPEKLY 172
              +PG+ KED+ ++   +TL IR +       E        +         I LP  + 
Sbjct: 71  IAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATV- 129

Query: 173 RTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 205
           + +   A+ +NGVL V +PK  E        ++
Sbjct: 130 KEENASAKFENGVLSVILPK-AESSIKKGINIE 161
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.93
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.92
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.92
4fei_A102 Heat shock protein-related protein; stress respons 99.91
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.91
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.9
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.89
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.89
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.88
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.86
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.85
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.76
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 99.03
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 99.03
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 98.38
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.3
3igf_A374 ALL4481 protein; two-domained protein consisting o 98.26
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 97.95
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 97.88
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 97.82
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 97.76
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 97.71
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 97.65
2o30_A131 Nuclear movement protein; MCSG, structural genomic 97.56
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 97.52
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 97.23
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 97.07
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
Probab=99.93  E-value=1.7e-25  Score=179.10  Aligned_cols=95  Identities=24%  Similarity=0.332  Sum_probs=81.9

Q ss_pred             ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccccc--------ce-eeeEEEEEEECCCCCCCCCceE
Q 028577          108 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG--------EE-SVRRYTSRIDLPEKLYRTDQIK  178 (207)
Q Consensus       108 p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~--------e~-~~~~f~r~i~LP~~v~d~~~ik  178 (207)
                      +++||+|++++|+|+++|||++++||+|+++++.|+|+|+++.+.+.        ++ .++.|+|+|.||.+| |.++|+
T Consensus        57 ~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~v-d~~~i~  135 (161)
T 4eld_A           57 MPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATV-KEENAS  135 (161)
T ss_dssp             CCEEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCB-CGGGCE
T ss_pred             cceeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCc-ccccEE
Confidence            34999999999999999999999999999999999999998764221        33 567999999999999 999999


Q ss_pred             EEEeCCEEEEEEeCcCcccCCceeEe
Q 028577          179 AEMKNGVLKVTVPKVKEEERADVFQV  204 (207)
Q Consensus       179 A~~~nGvL~I~lPK~~~~~~~~~i~I  204 (207)
                      |+|+||||+|++||.+.. +++.|+|
T Consensus       136 A~~~nGvL~I~lpK~~~~-~~r~I~I  160 (161)
T 4eld_A          136 AKFENGVLSVILPKAESS-IKKGINI  160 (161)
T ss_dssp             EEEETTEEEEEEEBCGGG-SCCCCCC
T ss_pred             EEEECCEEEEEEEcCCCC-CCcEeec
Confidence            999999999999998554 3445544
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 207
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 5e-17
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 2e-16
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 71.6 bits (175), Expect = 5e-17
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 110 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPE 169
               E D  + +   +PG+ KED+ ++   +TL IR +        ES R   S I   E
Sbjct: 13  ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMI-TESERIIYSEIPEEE 71

Query: 170 KLYRT---------DQIKAEMKNGVLKVTVPKVKEEER 198
           ++YRT         +   A+ +NGVL V +PK +   +
Sbjct: 72  EIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK 109
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.94
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.89
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 98.42
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 97.53
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 97.44
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 97.36
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 97.27
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 86.86
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.94  E-value=2.6e-26  Score=179.91  Aligned_cols=101  Identities=38%  Similarity=0.581  Sum_probs=86.7

Q ss_pred             CccceeeEEEcCCeEEEEEEcCCCCccceEEEEEC-CEEEEEeeecccccc--------ceeeeEEEEEEECCCCCCCCC
Q 028577          105 GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQ-NTLVIRGEGGKEGEG--------EESVRRYTSRIDLPEKLYRTD  175 (207)
Q Consensus       105 ~~~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~-~~L~I~g~~~~~~~~--------e~~~~~f~r~i~LP~~v~d~~  175 (207)
                      ...|++||.|++++|+|+++|||++++||+|++++ +.|+|+|++..+.+.        +..++.|+|+|.||.++ |.+
T Consensus        40 ~~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~v-d~~  118 (150)
T d1gmea_          40 FANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDA-KVE  118 (150)
T ss_dssp             HGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCC-CGG
T ss_pred             cCCCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCe-eec
Confidence            35789999999999999999999999999999986 589999987654432        23456899999999999 999


Q ss_pred             ceEEEEeCCEEEEEEeCcCcccCCceeEeecC
Q 028577          176 QIKAEMKNGVLKVTVPKVKEEERADVFQVKVD  207 (207)
Q Consensus       176 ~ikA~~~nGvL~I~lPK~~~~~~~~~i~I~Ie  207 (207)
                      +|+|+|+||+|+|++||.++. +++.+.|+|+
T Consensus       119 ~i~A~~~nGvL~I~lpK~~~~-~~~~~~I~I~  149 (150)
T d1gmea_         119 EVKAGLENGVLTVTVPKAEVK-KPEVKAIQIS  149 (150)
T ss_dssp             GCEEEEETTEEEEEEECCCCC-TTCCCCCCCC
T ss_pred             eeEEEEECCEEEEEEEcCCcC-CCCceEEecc
Confidence            999999999999999998654 4567778775
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure