Citrus Sinensis ID: 028579

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MSSSSCLLLSSSVPRIKKEAFANIRTKRDASTSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNLLIQSILHQP
Secondary Structure (PSIPRED)
ccccccEEEccccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHEEcccccHHHHcEEEEccccccccccEEEEEEEcccccccccEEEccccccccEEEEEEcccccccccccccccccEcccccHHEEccHccHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mssssclllsssvpriKKEAFANirtkrdastsasvsiscklkpappcpltlffnsnpakQKIVLVRSrtetgsgtdsdtdlatlagedsaafdlknqkltSWVYFSVILGVVLFLLQLLwidnstgygKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNLLIQSILHQP
Flexible Loop (DISEMBL)
mssssclllsssvprIKKEafanirtkrdastsasvsiSCKLKPAPPCPLTLFFNSNPAKQKIVLVRsrtetgsgtdsdtdlATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNLLIQSILHQP
Low Complexity Region (SEG)
MssssclllsssVPRIKKEAFANIRTKRDASTSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTEtgsgtdsdtdlatlagEDSAAFDLKNQKLTSWVYFSvilgvvlfllqllWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNLLIQSILHQP
Disordered region (IsUnstruct)
***************************************CKLKPAPPCPLTLFFNSNPAKQKIVLV************************AAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNLLIQSIL***
Disordered Region (DISOPRED)
******L**SSSVPR***********************************************************************GEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNLLIQSILH**
Disordered Region (DISEMBL)
********LSSSVPRIKKEAFANIRT***********ISCKLKPAPPCPLTLFFNSNPAKQKIVLVR**********SDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNLLIQSILHQP
Disordered Region (DISPRO)
*****CLLLSSSVPRIKKEAFANIRTKRD*STSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSR**************TLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNLLIQSILHQ*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSSCLLLSSSVPRIKKEAFANIRTKRDASTSASVSISCKLKPAPPCPLTLFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNLLIQSILHQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q9SAC0	367	15-cis-zeta-carotene isom	no	no	0.657	0.370	0.669	7e-45
B4FHU1	366	15-cis-zeta-carotene isom	N/A	no	0.724	0.409	0.543	1e-38

>sp|Q9SAC0|ZCIS_ARATH 15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana GN=Z-ISO PE=1 SV=1

 Score =  180 bits (456), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 114/139 (82%), Gaps = 3/139 (2%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +DS++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIV 194
           A+RVLFAG+SLPLA+STIV
Sbjct: 169 AFRVLFAGISLPLAMSTIV 187

Isomerase involved in the biosynthesis of carotenoids. Catalyzes the cis- to trans-conversion of the 15-cis-bond in 9,15,9'-tri-cis-zeta-carotene.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|B4FHU1|ZCIS_MAIZE 15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays PE=1 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 105/151 (69%), Gaps = 1/151 (0%)

Query: 44  PAPPCPLTLFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSW 103
           P PP    L  ++ PA+     +  +    +  D       L GEDSAAF+LK+Q + SW
Sbjct: 37  PLPPLSRVLS-HARPARAVGGGIEPKEGVVAEGDESGGGPVLVGEDSAAFELKDQSVASW 95

Query: 104 VYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLAS 163
            YF+ ILG VL  L +LWID STG G  F+D+V+S+SDSHEVVML+L +IFA VHSG+AS
Sbjct: 96  AYFAGILGAVLVALNVLWIDPSTGVGTKFLDAVASVSDSHEVVMLLLTIIFAVVHSGMAS 155

Query: 164 LRDMGEKVIGARAYRVLFAGVSLPLAVSTIV 194
           LR+ GEK++G R YRVLFAG+SLPLAV+TIV
Sbjct: 156 LRESGEKIVGERVYRVLFAGISLPLAVTTIV 186

Isomerase involved in the biosynthesis of carotenoids. Catalyzes the cis- to trans-conversion of the 15-cis-bond in 9,15,9'-tri-cis-zeta-carotene.

Zea mays (taxid: 4577)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224131464	374	predicted protein [Populus trichocarpa]	0.584	0.323	0.741	3e-44
255557164	384	conserved hypothetical protein [Ricinus	0.801	0.432	0.53	6e-44
388492778	181	unknown [Medicago truncatula]	0.536	0.613	0.729	8e-44
186478348	285	15-cis-zeta-carotene isomerase [Arabidop	0.657	0.477	0.669	2e-43
357520421	364	hypothetical protein MTR_8g097190 [Medic	0.671	0.381	0.613	3e-43
357462929	358	hypothetical protein MTR_3g084950 [Medic	0.536	0.310	0.729	3e-43
18391209	367	15-cis-zeta-carotene isomerase [Arabidop	0.657	0.370	0.669	3e-43
21554297	367	unknown [Arabidopsis thaliana]	0.657	0.370	0.661	1e-42
449468784	372	PREDICTED: 15-cis-zeta-carotene isomeras	0.594	0.330	0.72	2e-42
297849442	366	hypothetical protein ARALYDRAFT_471219 [	0.632	0.357	0.674	1e-41

>gi|224131464|ref|XP_002321091.1| predicted protein [Populus trichocarpa] gi|222861864|gb|EEE99406.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 108/124 (87%), Gaps = 3/124 (2%)

Query: 74  SGTDSDTDLAT---LAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGK 130
           S  D+DTD +    LAGEDSAAF+L  QK++SW+YFS+ILGVVLF+L + WIDNSTG+GK
Sbjct: 71  STKDADTDTSVPPPLAGEDSAAFELGKQKVSSWIYFSLILGVVLFVLDVAWIDNSTGFGK 130

Query: 131 AFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAV 190
            FI +VSSLS+S EVVM +LILIFATVHSGLASLRDMGEK+IG RA+RVLFAGVSLPLAV
Sbjct: 131 DFISAVSSLSESPEVVMFILILIFATVHSGLASLRDMGEKLIGERAFRVLFAGVSLPLAV 190

Query: 191 STIV 194
           ST+V
Sbjct: 191 STVV 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557164|ref|XP_002519613.1| conserved hypothetical protein [Ricinus communis] gi|223541203|gb|EEF42758.1| conserved hypothetical protein [Ricinus communis]

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 136/200 (68%), Gaps = 34/200 (17%)

Query: 2   SSSSCLLLSSSVPRIKKEAFANIRTKRDASTSASVSISCK-LKPAPPCPLTLFFNSNPAK 60
           S+ + LLL++S+P  + +                 SIS K L+P P        NS P  
Sbjct: 20  SNPTQLLLATSIPTFQNQT--------------KYSISSKFLRPNP--------NSVPFS 57

Query: 61  QKIVLVRSRTETGSGTDSDTDLATLA------GEDSAAFDLKNQKLTSWVYFSVILGVVL 114
            +I+    RT+T S  D+DT  ++        GEDSAAF+L  QK++SW+YFSVILGV L
Sbjct: 58  SRII----RTQT-SIRDADTSSSSSVSEETVVGEDSAAFELGKQKMSSWIYFSVILGVAL 112

Query: 115 FLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGA 174
           ++L + WIDNSTG+GK+FI SVS+LS+SHE VML+LI IFATVHSGLASLRD GE++IG 
Sbjct: 113 YVLDVAWIDNSTGFGKSFIQSVSTLSESHEAVMLILIFIFATVHSGLASLRDKGEELIGE 172

Query: 175 RAYRVLFAGVSLPLAVSTIV 194
           RAYRVLFAGVSLPLA+ST+V
Sbjct: 173 RAYRVLFAGVSLPLAMSTVV 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492778|gb|AFK34455.1| unknown [Medicago truncatula]

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 100/111 (90%)

Query: 84  TLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSH 143
           T  GEDSAAF+L  QK+TSW+YF+ ILGVVLF+L ++WIDNSTG+GKAF+D+VS LSDSH
Sbjct: 68  TFVGEDSAAFNLTEQKITSWIYFAAILGVVLFILNVVWIDNSTGFGKAFVDAVSGLSDSH 127

Query: 144 EVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIV 194
           EVVML+LIL+FA  HSG+ASLR+ GEK+IG RA+RV+FAG+SLPLAV+TIV
Sbjct: 128 EVVMLILILVFAVFHSGMASLRNTGEKIIGERAFRVIFAGISLPLAVTTIV 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478348|ref|NP_001117264.1| 15-cis-zeta-carotene isomerase [Arabidopsis thaliana] gi|332190531|gb|AEE28652.1| 15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 114/139 (82%), Gaps = 3/139 (2%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +DS++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIV 194
           A+RVLFAG+SLPLA+STIV
Sbjct: 169 AFRVLFAGISLPLAMSTIV 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520421|ref|XP_003630499.1| hypothetical protein MTR_8g097190 [Medicago truncatula] gi|355524521|gb|AET04975.1| hypothetical protein MTR_8g097190 [Medicago truncatula]

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 114/145 (78%), Gaps = 6/145 (4%)

Query: 53  FFNSNP---AKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVI 109
           +F+SNP   + + +  V S  E  +   +D+DL    GEDSA FD++NQKL+SW YF+ +
Sbjct: 43  YFSSNPLLLSHKLVTRVSSSEERATTQVTDSDLV---GEDSATFDIQNQKLSSWFYFTAV 99

Query: 110 LGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGE 169
           LGVVL +L ++WID+STG+GKAF+DS+S +SDSHEVVMLVL+LIFA VHSGLAS RD GE
Sbjct: 100 LGVVLSVLNVIWIDDSTGFGKAFVDSISGISDSHEVVMLVLVLIFAGVHSGLASFRDTGE 159

Query: 170 KVIGARAYRVLFAGVSLPLAVSTIV 194
           K+IG RAYRVLFAG SLPLA++ IV
Sbjct: 160 KLIGERAYRVLFAGTSLPLALTMIV 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462929|ref|XP_003601746.1| hypothetical protein MTR_3g084950 [Medicago truncatula] gi|217074294|gb|ACJ85507.1| unknown [Medicago truncatula] gi|355490794|gb|AES71997.1| hypothetical protein MTR_3g084950 [Medicago truncatula]

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 100/111 (90%)

Query: 84  TLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSH 143
           T  GEDSAAF+L  QK+TSW+YF+ ILGVVLF+L ++WIDNSTG+GKAF+D+VS LSDSH
Sbjct: 68  TFVGEDSAAFNLTEQKITSWIYFAAILGVVLFILNVVWIDNSTGFGKAFVDAVSGLSDSH 127

Query: 144 EVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIV 194
           EVVML+LIL+FA  HSG+ASLR+ GEK+IG RA+RV+FAG+SLPLAV+TIV
Sbjct: 128 EVVMLILILVFAVFHSGMASLRNTGEKIIGERAFRVIFAGISLPLAVTTIV 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391209|ref|NP_563879.1| 15-cis-zeta-carotene isomerase [Arabidopsis thaliana] gi|75200564|sp|Q9SAC0.1|ZCIS_ARATH RecName: Full=15-cis-zeta-carotene isomerase, chloroplastic; Flags: Precursor gi|4874265|gb|AAD31330.1|AC007354_3 EST gb|F13926 comes from this gene [Arabidopsis thaliana] gi|13194774|gb|AAK15549.1|AF348578_1 unknown protein [Arabidopsis thaliana] gi|62320518|dbj|BAD95085.1| hypothetical protein [Arabidopsis thaliana] gi|332190530|gb|AEE28651.1| 15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 114/139 (82%), Gaps = 3/139 (2%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +DS++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIV 194
           A+RVLFAG+SLPLA+STIV
Sbjct: 169 AFRVLFAGISLPLAMSTIV 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554297|gb|AAM63372.1| unknown [Arabidopsis thaliana]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/139 (66%), Positives = 113/139 (81%), Gaps = 3/139 (2%)

Query: 58  PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
           P  +KI LVRS  R +    +D ++    L GEDSAAF+L  QKL SWVYF V+LGVVLF
Sbjct: 50  PVIRKI-LVRSTLREDQPIASDYESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108

Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
           +L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168

Query: 176 AYRVLFAGVSLPLAVSTIV 194
           A+RVLFAG+SLPLA+STIV
Sbjct: 169 AFRVLFAGISLPLAMSTIV 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468784|ref|XP_004152101.1| PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic-like [Cucumis sativus] gi|449521697|ref|XP_004167866.1| PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic-like [Cucumis sativus]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/125 (72%), Positives = 106/125 (84%), Gaps = 2/125 (1%)

Query: 71  ETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWIDNSTG-YG 129
           E+G G+ S +D     GED+AAFDL  QKLTSWVYF+VILGVVLF+L ++WIDNS G  G
Sbjct: 69  ESG-GSTSVSDDEGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWIDNSAGGVG 127

Query: 130 KAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLA 189
           KAF+D+VS +SDSHEVVML+LI IFA VHSGLASLRD GEK++G RA+RVLFAGVSLPLA
Sbjct: 128 KAFLDAVSGISDSHEVVMLLLIFIFAIVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLA 187

Query: 190 VSTIV 194
           VST+V
Sbjct: 188 VSTVV 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849442|ref|XP_002892602.1| hypothetical protein ARALYDRAFT_471219 [Arabidopsis lyrata subsp. lyrata] gi|297338444|gb|EFH68861.1| hypothetical protein ARALYDRAFT_471219 [Arabidopsis lyrata subsp. lyrata]

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 107/132 (81%), Gaps = 1/132 (0%)

Query: 64  VLVRSRTETGSGTDSDTDLATL-AGEDSAAFDLKNQKLTSWVYFSVILGVVLFLLQLLWI 122
           +LV S         SD +  TL  GEDSAAF+L  QKL SWVYF V+LGVVLF+L ++WI
Sbjct: 55  ILVHSTLREDQPIASDAESPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLFILNVVWI 114

Query: 123 DNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFA 182
           DNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG RA+RVLFA
Sbjct: 115 DNSTGFGKSFIDTVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGERAFRVLFA 174

Query: 183 GVSLPLAVSTIV 194
           G+SLPLA+STIV
Sbjct: 175 GISLPLAMSTIV 186

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2196475	367	Z-ISO "15-cis-zeta-carotene is	0.690	0.389	0.568	1.3e-34

TAIR|locus:2196475 Z-ISO "15-cis-zeta-carotene isomerase" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 83/146 (56%), Positives = 100/146 (68%)

Query:    51 TLFFNSNPAKQKIVLVRS--RTEXXXXXXXXXXXXXXXXEDSAAFDLKNQKLTSWVYFSX 108
             +L  +S+P  +KI LVRS  R +                EDSAAF+L  QKL SWVYF  
Sbjct:    43 SLLSSSSPVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGV 101

Query:   109 XXXXXXXXXXXXWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMG 168
                         WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+G
Sbjct:   102 VLGVVLFILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIG 161

Query:   169 EKVIGARAYRVLFAGVSLPLAVSTIV 194
             EK+IG RA+RVLFAG+SLPLA+STIV
Sbjct:   162 EKLIGERAFRVLFAGISLPLAMSTIV 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      207       167   0.00075  108 3  11 22  0.36    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  130 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.70u 0.23s 11.93t   Elapsed:  00:00:01
  Total cpu time:  11.70u 0.23s 11.93t   Elapsed:  00:00:01
  Start:  Sat May 11 02:31:00 2013   End:  Sat May 11 02:31:01 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016120 "carotene biosynthetic process" evidence=IMP

GO:0090471 "9,15,9'-tri-cis-zeta-carotene isomerase activity" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00140939	hypothetical protein (374 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•					0.548
	estExt_fgenesh4_pm.C_700037	zeta-carotene desaturase (EC-1.14.99.30) (530 aa)	•		•				•		0.523
	fgenesh4_pm.C_LG_XIII000161	zeta-carotene desaturase (EC-1.14.99.30) (582 aa)	•		•				•		0.520
	gw1.IV.4597.1	annotation not avaliable (66 aa)			•						0.504
	estExt_Genewise1_v1.C_LG_V0741	photosystem II protein Psb27 (175 aa)			•						0.504
	grail3.0003047901	photosystem II protein Psb27 (176 aa)			•						0.503
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•						0.502
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•						0.501
	gw1.X.280.1	hypothetical protein (95 aa)			•						0.500
	gw1.VIII.1120.1	hypothetical protein (94 aa)			•						0.500

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
pfam07298	184	pfam07298, NnrU, NnrU protein	4e-04

>gnl|CDD|203608 pfam07298, NnrU, NnrU protein

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 146 VMLVLILIFATVHSGLAS--LRDMGEKVIGARAYRVLFAGVSLPLAVSTIV 194
           ++++ + +F   HS   +  LR      +G R Y+ L++ +SL   V  I+
Sbjct: 1   LLILGLALFLGAHSFPRAPPLRARLIARLGERGYKGLYSLLSLAGLVLIII 51

This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor. Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PF07298	191	NnrU: NnrU protein; InterPro: IPR009915 This famil	97.67
cd03500	106	SQR_TypeA_SdhD_like Succinate:quinone oxidoreducta	89.05

>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins

Probab=97.67  E-value=3.9e-05  Score=63.41  Aligned_cols=53  Identities=26%  Similarity=0.278  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhccc--ccccchhhhhhhhhhhHHHHhhcchhHHHHHHHHHHH
Q 028579          146 VMLVLILIFATVHSGL--ASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVSSNL  198 (207)
Q Consensus       146 VML~LlliFAi~HSGl--AsLR~~gEk~IGaRayRVlFA~vSLPLAv~~IvYFi~  198 (207)
                      ++++.++.|+..||..  ..+|++.++.+|+|.||.+|+++|+..-+.+|.++-.
T Consensus         1 ~li~~l~lF~~~Hs~~~~p~~R~~l~~~lG~~~y~~~ysllSl~~l~lii~~~~~   55 (191)
T PF07298_consen    1 LLILGLALFLGQHSVPARPGLRARLIARLGERGYRGLYSLLSLAGLVLIIWGYRS   55 (191)
T ss_pred             CHHHHHHHHHHHHhhhccHhhhHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            3667888999999995  7899999999999999999999999988877776643

NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].

>cd03500 SQR_TypeA_SdhD_like Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol

Probab=89.05  E-value=3.8  Score=29.95  Aligned_cols=93  Identities=15%  Similarity=0.053  Sum_probs=54.4

Q ss_pred             ccchhHHHHHHHHHHHHHHhhheeeeCCCCchhhHHHHHhccCCChHHHHHHHHHHHHHHhcccccccchhhhhhhhhhh
Q 028579           98 QKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGARAY  177 (207)
Q Consensus        98 Qk~~SW~yF~~iLgvVL~~L~v~WIdpsTG~G~~Fidavssls~Sh~~VML~LlliFAi~HSGlAsLR~~gEk~IGaRay  177 (207)
                      |++++++.+-.+..-+....+..+.     -+.+|=+..+.+++.- +..+.+++..+..+-+...+|.--|+.+-.+.+
T Consensus         8 qRiTgv~L~~~l~~hi~~~~~~~~~-----~~~~~~~~~~~~~~p~-~~i~~~lll~~~~~H~~~Glr~il~Dy~~~~~~   81 (106)
T cd03500           8 QRITGVFLVFLLAGHFWVQHMDNGG-----DVIDFAFVANRLASPL-WKVWDLLLLVLALLHGGNGLRNILLDYVRRPRL   81 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccC-----CccCHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHhHHHHHHHHccCchH
Confidence            5666666555444433333333222     3344555555555333 444556667777777899999999999877777


Q ss_pred             HHHHhhcchhHHHHHHHHH
Q 028579          178 RVLFAGVSLPLAVSTIVSS  196 (207)
Q Consensus       178 RVlFA~vSLPLAv~~IvYF  196 (207)
                      |..+-.+..=.++.++++.
T Consensus        82 r~~~~~~~~~~~~~~~~~g  100 (106)
T cd03500          82 RRAVKGLLYVAGLLLIVLG  100 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7776655544444444443

Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00