Citrus Sinensis ID: 028585

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
cccccccccccccccccccccccccccccEEEEcccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEEEEEEccccEEEcEEcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcc
ccccccccccccccccccEEEccccccccEEEccccHHHHEEEccccccEEEccccHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHcc
matavvaqsqdpsqphydvklfnrwtfedvqvndislsdyigvqaakhatyvphtagrysvkrfrkaqcPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVinsgpredatrigsagvvrrqavdisplrrvNQAIYLITTGARESAFRNIKTIAECLADELINaakgssnsyaikKKDEIERVAKANR
matavvaqsqdpsqphydVKLFNRWTFEDVQVNDISLSDYIGVQAAKHAtyvphtagrysvkrfrkaQCPIVerltnslmmhgrnNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRedatrigsagvvrrqavdisplrrvnQAIYLITTGARESAFRNIKTIAECLADELInaakgssnsyaikkkdeiERVAKANR
MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
****************YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINA************************
**************PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYS*KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA**
*************QPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
**************PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query207 2.2.26 [Sep-21-2011]
P51427207 40S ribosomal protein S5- yes no 1.0 1.0 0.869 1e-103
O65731197 40S ribosomal protein S5 N/A no 0.942 0.989 0.903 1e-103
Q9ZUT9207 40S ribosomal protein S5- no no 1.0 1.0 0.850 1e-102
P46782204 40S ribosomal protein S5 yes no 0.961 0.975 0.765 1e-90
Q5E988204 40S ribosomal protein S5 yes no 0.961 0.975 0.765 1e-90
P97461204 40S ribosomal protein S5 yes no 0.913 0.926 0.8 8e-90
Q7RVI1213 40S ribosomal protein S5 N/A no 0.898 0.873 0.783 1e-88
P24050204 40S ribosomal protein S5 yes no 0.961 0.975 0.751 2e-88
Q24186228 40S ribosomal protein S5a yes no 0.971 0.881 0.743 4e-88
Q9VFE4230 40S ribosomal protein S5b no no 0.913 0.821 0.763 1e-85
>sp|P51427|RS52_ARATH 40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2 Back     alignment and function desciption
 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/207 (86%), Positives = 192/207 (92%)

Query: 1   MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYS 60
           MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYS
Sbjct: 1   MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVI 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LITTGARE+AFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

Arabidopsis thaliana (taxid: 3702)
>sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZUT9|RS51_ARATH 40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1 Back     alignment and function description
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4 Back     alignment and function description
>sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3 Back     alignment and function description
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3 Back     alignment and function description
>sp|Q7RVI1|RS5_NEUCR 40S ribosomal protein S5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rps-5 PE=3 SV=2 Back     alignment and function description
>sp|P24050|RS5_RAT 40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=1 SV=3 Back     alignment and function description
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=2 SV=1 Back     alignment and function description
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
313586551209 40S ribosomal protein S5A [Hevea brasili 1.0 0.990 0.918 1e-108
313586553209 40S ribosomal protein S5B [Hevea brasili 0.985 0.976 0.926 1e-108
255581578211 40S ribosomal protein S5, putative [Rici 0.961 0.943 0.944 1e-107
255587562209 40S ribosomal protein S5, putative [Rici 1.0 0.990 0.913 1e-107
449443474207 PREDICTED: 40S ribosomal protein S5-1-li 1.0 1.0 0.903 1e-106
449445316207 PREDICTED: 40S ribosomal protein S5-1-li 1.0 1.0 0.898 1e-106
449444098207 PREDICTED: 40S ribosomal protein S5-1-li 1.0 1.0 0.888 1e-105
224091519208 predicted protein [Populus trichocarpa] 0.995 0.990 0.885 1e-103
116784084198 unknown [Picea sitchensis] gi|116786244| 0.932 0.974 0.927 1e-103
356500397204 PREDICTED: 40S ribosomal protein S5-like 0.942 0.955 0.923 1e-103
>gi|313586551|gb|ADR71286.1| 40S ribosomal protein S5A [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/209 (91%), Positives = 201/209 (96%), Gaps = 2/209 (0%)

Query: 1   MATAVVAQ--SQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGR 58
           MA A+ A   + +P+QP+ +VKLFNRWTFE+VQVNDISLSDYIGVQ AKHATYVPHTAGR
Sbjct: 1   MAAALAATPVTGEPTQPYNEVKLFNRWTFEEVQVNDISLSDYIGVQPAKHATYVPHTAGR 60

Query: 59  YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDA 118
           YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDA
Sbjct: 61  YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDA 120

Query: 119 VINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLAD 178
           VINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYL+TTGARE+AFRNIKTIAECLAD
Sbjct: 121 VINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLAD 180

Query: 179 ELINAAKGSSNSYAIKKKDEIERVAKANR 207
           ELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 ELINAAKGSSNSYAIKKKDEIERVAKANR 209

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|313586553|gb|ADR71287.1| 40S ribosomal protein S5B [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255581578|ref|XP_002531594.1| 40S ribosomal protein S5, putative [Ricinus communis] gi|223528790|gb|EEF30797.1| 40S ribosomal protein S5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255587562|ref|XP_002534312.1| 40S ribosomal protein S5, putative [Ricinus communis] gi|223525513|gb|EEF28068.1| 40S ribosomal protein S5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449443474|ref|XP_004139502.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 1 [Cucumis sativus] gi|449443476|ref|XP_004139503.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445316|ref|XP_004140419.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 1 [Cucumis sativus] gi|449445318|ref|XP_004140420.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 2 [Cucumis sativus] gi|449445320|ref|XP_004140421.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 3 [Cucumis sativus] gi|449445322|ref|XP_004140422.1| PREDICTED: 40S ribosomal protein S5-1-like isoform 4 [Cucumis sativus] gi|449528012|ref|XP_004171001.1| PREDICTED: 40S ribosomal protein S5-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449444098|ref|XP_004139812.1| PREDICTED: 40S ribosomal protein S5-1-like [Cucumis sativus] gi|449492606|ref|XP_004159046.1| PREDICTED: 40S ribosomal protein S5-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224091519|ref|XP_002309278.1| predicted protein [Populus trichocarpa] gi|222855254|gb|EEE92801.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|116784084|gb|ABK23207.1| unknown [Picea sitchensis] gi|116786244|gb|ABK24039.1| unknown [Picea sitchensis] gi|116793442|gb|ABK26748.1| unknown [Picea sitchensis] gi|224285738|gb|ACN40584.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|356500397|ref|XP_003519018.1| PREDICTED: 40S ribosomal protein S5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
TAIR|locus:2081546207 RPS5A "ribosomal protein 5A" [ 1.0 1.0 0.869 3.5e-91
TAIR|locus:2049862207 RPS5B "ribosomal protein 5B" [ 1.0 1.0 0.850 6.5e-90
UNIPROTKB|Q5E988204 RPS5 "40S ribosomal protein S5 0.961 0.975 0.765 1.8e-80
UNIPROTKB|E2RIQ8204 RPS5 "Uncharacterized protein" 0.961 0.975 0.765 1.8e-80
UNIPROTKB|P46782204 RPS5 "40S ribosomal protein S5 0.961 0.975 0.765 1.8e-80
UNIPROTKB|F2Z5E6204 RPS5 "Uncharacterized protein" 0.961 0.975 0.765 1.8e-80
ZFIN|ZDB-GENE-060825-73201 zgc:153322 "zgc:153322" [Danio 0.966 0.995 0.769 4.7e-80
MGI|MGI:1097682204 Rps5 "ribosomal protein S5" [M 0.913 0.926 0.8 7.6e-80
RGD|3601204 Rps5 "ribosomal protein S5" [R 0.961 0.975 0.751 1.1e-78
ZFIN|ZDB-GENE-020419-12204 rps5 "ribosomal protein S5" [D 0.913 0.926 0.773 3e-78
TAIR|locus:2081546 RPS5A "ribosomal protein 5A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 180/207 (86%), Positives = 192/207 (92%)

Query:     1 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYS 60
             MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYS
Sbjct:     1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 60

Query:    61 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVI 120
             VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++
Sbjct:    61 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 120

Query:   121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADEL 180
             NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LITTGARE+AFRNIKTIAECLADEL
Sbjct:   121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 180

Query:   181 INAAKGSSNSYAIKKKDEIERVAKANR 207
             INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:   181 INAAKGSSNSYAIKKKDEIERVAKANR 207
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0015935 "small ribosomal subunit" evidence=IEA
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2049862 RPS5B "ribosomal protein 5B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E988 RPS5 "40S ribosomal protein S5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIQ8 RPS5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P46782 RPS5 "40S ribosomal protein S5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5E6 RPS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060825-73 zgc:153322 "zgc:153322" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1097682 Rps5 "ribosomal protein S5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3601 Rps5 "ribosomal protein S5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-12 rps5 "ribosomal protein S5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B0R8D0RS7_HALS3No assigned EC number0.43680.88880.8761yesno
A4FWF1RS7_METM5No assigned EC number0.49210.89850.9893yesno
Q54MA6RS5_DICDINo assigned EC number0.67360.90330.9842yesno
Q9YAU8RS7_AERPENo assigned EC number0.51320.89370.9024yesno
B1YC67RS7_PYRNVNo assigned EC number0.49730.88400.8169yesno
P35026RS7_SULSONo assigned EC number0.50520.89370.9585yesno
P46782RS5_HUMANNo assigned EC number0.76580.96130.9754yesno
O65731RS5_CICARNo assigned EC number0.90350.94200.9898N/Ano
P26783RS5_YEASTNo assigned EC number0.69080.97100.8933yesno
P14037RS7_METVSNo assigned EC number0.45310.90330.9639yesno
Q976B0RS7_SULTONo assigned EC number0.50.89370.9536yesno
Q6LXI3RS7_METMPNo assigned EC number0.50780.89850.9893yesno
P49041RS5_CAEELNo assigned EC number0.750.94200.9285yesno
Q8PUR6RS7_METMANo assigned EC number0.42020.88880.9735yesno
A1RSA1RS7_PYRILNo assigned EC number0.51320.89370.8258yesno
Q8TXJ3RS7_METKANo assigned EC number0.48690.90330.9492yesno
Q8SS72RS5_ENCCUNo assigned EC number0.48940.90330.8990yesno
Q9P3T6RS5B_SCHPONo assigned EC number0.74600.89850.9162yesno
Q9VFE4RS5B_DROMENo assigned EC number0.76310.91300.8217nono
Q08364RS5_PODCANo assigned EC number0.75260.91300.9N/Ano
A6VGV4RS7_METM7No assigned EC number0.48690.89850.9893yesno
A8MBL5RS7_CALMQNo assigned EC number0.43910.89370.8258yesno
A0B563RS7_METTPNo assigned EC number0.41790.89371.0yesno
Q24186RS5A_DROMENo assigned EC number0.74390.97100.8815yesno
P0CX01RS7_HALSANo assigned EC number0.43680.88880.8761yesno
P17198RS7_SULACNo assigned EC number0.48940.89370.9487yesno
P97461RS5_MOUSENo assigned EC number0.80.91300.9264yesno
A7I4X5RS7_METB6No assigned EC number0.41340.98060.9950yesno
Q97CD9RS7_THEVONo assigned EC number0.42780.88400.9945yesno
Q464Z2RS7_METBFNo assigned EC number0.42320.89371.0yesno
Q8TRC2RS7_METACNo assigned EC number0.42020.88880.9735yesno
Q5E988RS5_BOVINNo assigned EC number0.76580.96130.9754yesno
B8D6G4RS7_DESK1No assigned EC number0.47360.89850.9393yesno
A0RUR1RS7_CENSYNo assigned EC number0.44380.87920.9145yesno
Q9ZUT9RS51_ARATHNo assigned EC number0.85021.01.0nono
P24050RS5_RATNo assigned EC number0.75120.96130.9754yesno
O93631RS7_METBUNo assigned EC number0.41480.88880.9892yesno
Q8ZYK5RS7_PYRAENo assigned EC number0.48670.89370.8295yesno
O27130RS7_METTHNo assigned EC number0.45400.87430.9731yesno
Q7RVI1RS5_NEUCRNo assigned EC number0.78300.89850.8732N/Ano
A9A9U5RS7_METM6No assigned EC number0.48690.89850.9893yesno
O14277RS5A_SCHPONo assigned EC number0.74600.89850.9162yesno
O28386RS7_ARCFUNo assigned EC number0.46310.89850.9587yesno
A6UV45RS7_META3No assigned EC number0.44500.89850.9893yesno
Q2NEK9RS7_METSTNo assigned EC number0.46770.87920.9732yesno
P51427RS52_ARATHNo assigned EC number0.86951.01.0yesno
O24111RS5_NICPLNo assigned EC number0.96750.74391.0N/Ano
P54063RS7_METJANo assigned EC number0.50260.89850.9738yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00061162
SubName- Full=Putative uncharacterized protein; (208 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00011680
hypothetical protein (270 aa)
  ••••• 0.876
eugene3.00060477
SubName- Full=Putative uncharacterized protein; (270 aa)
  ••••• 0.875
estExt_Genewise1_v1.C_LG_XVI1732
hypothetical protein (276 aa)
  ••••• 0.870
estExt_fgenesh4_pg.C_LG_I2557
SubName- Full=Putative uncharacterized protein; (146 aa)
   •••• 0.842
estExt_fgenesh4_pg.C_LG_VIII1330
SubName- Full=Putative uncharacterized protein; (145 aa)
   •••• 0.841
estExt_fgenesh4_pg.C_LG_X0832
SubName- Full=Putative uncharacterized protein; (145 aa)
   •••• 0.840
grail3.0040004901
SubName- Full=Putative uncharacterized protein; (159 aa)
  ••••• 0.823
estExt_fgenesh4_kg.C_LG_II0054
SubName- Full=Putative uncharacterized protein; (159 aa)
  ••••• 0.822
estExt_Genewise1_v1.C_LG_XVIII3410
hypothetical protein (160 aa)
  ••••• 0.821
estExt_fgenesh4_kg.C_LG_XVII0009
SubName- Full=Putative uncharacterized protein; (144 aa)
  ••••• 0.810

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
PTZ00091193 PTZ00091, PTZ00091, 40S ribosomal protein S5; Prov 1e-126
TIGR01028186 TIGR01028, S7_S5_E_A, ribosomal protein S7(archaea 1e-104
PRK04027195 PRK04027, PRK04027, 30S ribosomal protein S7P; Rev 5e-88
COG0049148 COG0049, RpsG, Ribosomal protein S7 [Translation, 1e-58
pfam00177149 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e 4e-50
CHL00053155 CHL00053, rps7, ribosomal protein S7 6e-19
PRK05302156 PRK05302, PRK05302, 30S ribosomal protein S7; Vali 6e-18
TIGR01029154 TIGR01029, rpsG_bact, ribosomal protein S7, bacter 1e-15
>gnl|CDD|185439 PTZ00091, PTZ00091, 40S ribosomal protein S5; Provisional Back     alignment and domain information 
 Score =  353 bits (907), Expect = e-126
 Identities = 150/190 (78%), Positives = 170/190 (89%), Gaps = 1/190 (0%)

Query: 18  DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 77
           + KLF +W+++DVQV+D+SL DYI V   K + +VPHTAGRY  KRFRKAQCPIVERL N
Sbjct: 5   EPKLFGKWSYDDVQVSDLSLKDYIAVTT-KASVFVPHTAGRYQKKRFRKAQCPIVERLVN 63

Query: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVV 137
           SLM HGRNNGKKL+AVRIVKHA EIIHLLTD+NP+QV+VDAV N GPRED+TR+GS GVV
Sbjct: 64  SLMFHGRNNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVV 123

Query: 138 RRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVD+SPLRRVNQAIYLI  GARE+AFRNIKTIAECLADE+INA+K SSNSYAIKKKD
Sbjct: 124 RRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLADEIINASKESSNSYAIKKKD 183

Query: 198 EIERVAKANR 207
           E+ERVAKANR
Sbjct: 184 EVERVAKANR 193

Length = 193
>gnl|CDD|211618 TIGR01028, S7_S5_E_A, ribosomal protein S7(archaeal)/S5(eukaryotic) Back     alignment and domain information
>gnl|CDD|235204 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed Back     alignment and domain information
>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e Back     alignment and domain information
>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7 Back     alignment and domain information
>gnl|CDD|235398 PRK05302, PRK05302, 30S ribosomal protein S7; Validated Back     alignment and domain information
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 207
PTZ00091193 40S ribosomal protein S5; Provisional 100.0
PRK04027195 30S ribosomal protein S7P; Reviewed 100.0
TIGR01028186 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukary 100.0
KOG3291208 consensus Ribosomal protein S7 [Translation, ribos 100.0
COG0049148 RpsG Ribosomal protein S7 [Translation, ribosomal 100.0
TIGR01029154 rpsG_bact ribosomal protein S7, bacterial/organell 100.0
PRK05302156 30S ribosomal protein S7; Validated 100.0
PF00177148 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: 100.0
CHL00053155 rps7 ribosomal protein S7 100.0
>PTZ00091 40S ribosomal protein S5; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.2e-80  Score=518.55  Aligned_cols=191  Identities=79%  Similarity=1.192  Sum_probs=186.2

Q ss_pred             CCcccceeccCCCCceecCCCCccceeeccCCcceeeecCCCccccccccccCchhHHHHHHHhhcCCCCCccHHHHHHH
Q 028585           16 HYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI   95 (207)
Q Consensus        16 ~~~~~lf~kw~~~~v~v~D~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM~~g~~~GKK~~A~rI   95 (207)
                      ..++|||||||++||+|.||||.+||++++ |.++|+|||+|||++|+|+|++||+|+||||.||++|||+|||++|++|
T Consensus         3 ~~~~~lf~kw~~~~v~~~d~~l~~yi~~~~-~~~~~~pht~gr~~~k~f~k~~~~iVerLiN~lM~~grn~GKK~~A~~I   81 (193)
T PTZ00091          3 ANEPKLFGKWSYDDVQVSDLSLKDYIAVTT-KASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRI   81 (193)
T ss_pred             CccchhhCCcCcccCeecCcCHHHHhhccc-CCceeeccccchhhcCccCcccCHHHHHHHHHHhccCccCCcHHHHHHH
Confidence            357899999999999999999999999983 4569999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEEEeeecChhHHHHHHHHHHHHHHHhhcCCCcCcHHHH
Q 028585           96 VKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAEC  175 (207)
Q Consensus        96 v~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~vpv~vsp~rr~~lAirwI~~~ar~~~~r~~k~~~e~  175 (207)
                      |++||++|++.|++||+|||++||+|++|++|++|+++||++||+||||+|.||+++||+||+++|++++||+.++|++|
T Consensus        82 V~~AfeiI~~~t~~nPiqVl~~AI~N~~P~~e~~ri~~GG~~yqvpVdVsp~Rr~~lAirwI~~~ar~~~fR~~ks~~e~  161 (193)
T PTZ00091         82 VKHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAEC  161 (193)
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHhCCCCeeeEEeecCCeEEEEeeecChHHHHHHHHHHHHHHHHhhcccCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585          176 LADELINAAKGSSNSYAIKKKDEIERVAKANR  207 (207)
Q Consensus       176 LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR  207 (207)
                      ||+|||+|++|+|+||||+||||+||||+|||
T Consensus       162 LA~Eli~Aa~~~~~s~AikKKeE~hR~AeANR  193 (193)
T PTZ00091        162 LADEIINASKESSNSYAIKKKDEVERVAKANR  193 (193)
T ss_pred             HHHHHHHHHhCCCCCcceehHHHHHHHHHhcC
Confidence            99999999999999999999999999999998

>PRK04027 30S ribosomal protein S7P; Reviewed Back     alignment and domain information
>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic) Back     alignment and domain information
>KOG3291 consensus Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle Back     alignment and domain information
>PRK05302 30S ribosomal protein S7; Validated Back     alignment and domain information
>PF00177 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: IPR023798 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>CHL00053 rps7 ribosomal protein S7 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
3iz6_F200 Localization Of The Small Subunit Ribosomal Protein 1e-101
2zkq_g204 Structure Of A Mammalian Ribosomal 40s Subunit With 1e-91
3izb_F225 Localization Of The Small Subunit Ribosomal Protein 5e-83
3jyv_G186 Structure Of The 40s Rrna And Proteins And PE TRNA 8e-82
3zey_2190 High-resolution Cryo-electron Microscopy Structure 5e-79
1s1h_G150 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 8e-69
2xzm_G200 Crystal Structure Of The Eukaryotic 40s Ribosomal S 6e-68
3j0l_T192 Core Of Mammalian 80s Pre-Ribosome In Complex With 8e-68
3j20_H215 Promiscuous Behavior Of Proteins In Archaeal Riboso 6e-37
1iqv_A218 Crystal Structure Analysis Of The Archaebacterial R 2e-36
1rss_A151 Ribosomal Protein S7 From Thermus Thermophilus Leng 4e-10
1i94_G155 Crystal Structures Of The Small Ribosomal Subunit W 4e-10
1fjg_G156 Structure Of The Thermus Thermophilus 30s Ribosomal 4e-10
1fka_G151 Structure Of Functionally Activated Small Ribosomal 6e-10
3gty_S149 Promiscuous Substrate Recognition In Folding And As 5e-09
3bbn_G155 Homology Model For The Spinach Chloroplast 30s Subu 1e-08
1eg0_D146 Fitting Of Components With Known Structure Into An 4e-08
1qd7_F135 Partial Model For 30s Ribosomal Subunit Length = 13 4e-08
1x18_F154 Contact Sites Of Era Gtpase On The Thermus Thermoph 9e-08
1p6g_G178 Real Space Refined Coordinates Of The 30s Subunit F 7e-06
1vs5_G179 Crystal Structure Of The Bacterial Ribosome From Es 7e-06
3sfs_G156 Crystal Structure Of Release Factor Rf3 Trapped In 1e-05
2gy9_G137 Structure Of The 30s Subunit Of A Pre-Translocation 1e-05
3ofo_G151 Crystal Structure Of The E. Coli Ribosome Bound To 2e-05
3fih_G150 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 2e-05
>pdb|3IZ6|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 200 Back     alignment and structure 
Iteration: 1

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/188 (91%), Positives = 181/188 (96%)
Query: 20  KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSL 79
           KLFN W+FEDVQVNDISL+DY+ V + KHATY+PHTAGRYS KRFRKAQCP+VERLTNSL
Sbjct: 13  KLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNSL 72
Query: 80  MMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRR 139
           MMHGRNNGKK+MAVRIVKHAMEIIHLLTD NPIQVIVDA+INSGPREDATRIGSAG VRR
Sbjct: 73  MMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRR 132
Query: 140 QAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI 199
           QAVDISPLRRVNQAIYL+TTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI
Sbjct: 133 QAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI 192
Query: 200 ERVAKANR 207
           ERVAKANR
Sbjct: 193 ERVAKANR 200
>pdb|2ZKQ|GG Chain g, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 204 Back     alignment and structure
>pdb|3IZB|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 225 Back     alignment and structure
>pdb|3JYV|G Chain G, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 186 Back     alignment and structure
>pdb|3ZEY|2 Chain 2, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 190 Back     alignment and structure
>pdb|1S1H|G Chain G, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i. Length = 150 Back     alignment and structure
>pdb|2XZM|G Chain G, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 200 Back     alignment and structure
>pdb|3J0L|T Chain T, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 192 Back     alignment and structure
>pdb|3J20|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 215 Back     alignment and structure
>pdb|1IQV|A Chain A, Crystal Structure Analysis Of The Archaebacterial Ribosomal Protein S7 Length = 218 Back     alignment and structure
>pdb|1RSS|A Chain A, Ribosomal Protein S7 From Thermus Thermophilus Length = 151 Back     alignment and structure
>pdb|1I94|G Chain G, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 155 Back     alignment and structure
>pdb|1FJG|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 156 Back     alignment and structure
>pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 151 Back     alignment and structure
>pdb|3GTY|S Chain S, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 149 Back     alignment and structure
>pdb|3BBN|G Chain G, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 155 Back     alignment and structure
>pdb|1QD7|F Chain F, Partial Model For 30s Ribosomal Subunit Length = 135 Back     alignment and structure
>pdb|1X18|F Chain F, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 154 Back     alignment and structure
>pdb|1P6G|G Chain G, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 178 Back     alignment and structure
>pdb|1VS5|G Chain G, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 179 Back     alignment and structure
>pdb|3SFS|G Chain G, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome Length = 156 Back     alignment and structure
>pdb|2GY9|G Chain G, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 137 Back     alignment and structure
>pdb|3OFO|G Chain G, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 30s Subunit Of The First 70s Ribosome. Length = 151 Back     alignment and structure
>pdb|3FIH|G Chain G, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 150 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
3u5c_F225 RP14, S2, YS8, 40S ribosomal protein S5; translati 1e-108
2xzm_G200 Ribosomal protein S7 containing protein; ribosome, 1e-108
2zkq_g204 40S ribosomal protein S5E; protein-RNA complex, 40 1e-106
1iqv_A218 Ribosomal protein S7; RNA-binding, decoding center 1e-102
3bbn_G155 Ribosomal protein S7; small ribosomal subunit, spi 8e-20
1hus_A155 Ribosomal protein S7; RNA-binding protein, decodin 3e-18
3gty_S149 TF, 30S ribosomal protein S7; chaperone-client com 3e-18
1rss_A151 Ribosomal protein S7; RNA-binding, translation; 1. 4e-18
3i1m_G179 30S ribosomal protein S7; ribosome structure, prot 4e-18
3r8n_G151 30S ribosomal protein S7; protein biosynthesis, RN 2e-17
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225 Back     alignment and structure
 Score =  308 bits (791), Expect = e-108
 Identities = 140/206 (67%), Positives = 169/206 (82%), Gaps = 3/206 (1%)

Query: 2   ATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSV 61
                   ++  Q   ++KLFN+W+FE+V+V D SL DY+ V   +   +V HTAGRY+ 
Sbjct: 23  VVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQV---RQPIFVAHTAGRYAN 79

Query: 62  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVIN 121
           KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AVRI+KH ++II++LTDQNPIQV+VDA+ N
Sbjct: 80  KRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITN 139

Query: 122 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELI 181
           +GPRED TR+G  G  RRQAVD+SPLRRVNQAI L+T GARE+AFRNIKTIAE LA+ELI
Sbjct: 140 TGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELI 199

Query: 182 NAAKGSSNSYAIKKKDEIERVAKANR 207
           NAAKGSS SYAIKKKDE+ERVAK+NR
Sbjct: 200 NAAKGSSTSYAIKKKDELERVAKSNR 225
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T Length = 200 Back     alignment and structure
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris} Length = 204 Back     alignment and structure
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Length = 218 Back     alignment and structure
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 155 Back     alignment and structure
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1 Length = 155 Back     alignment and structure
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} Length = 149 Back     alignment and structure
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ... Length = 151 Back     alignment and structure
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 2qal_G* 1p6g_G 1p87_G 2aw7_G 2avy_G ... Length = 179 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
3u5c_F225 RP14, S2, YS8, 40S ribosomal protein S5; translati 100.0
2xzm_G200 Ribosomal protein S7 containing protein; ribosome, 100.0
2zkq_g204 40S ribosomal protein S5E; protein-RNA complex, 40 100.0
1iqv_A218 Ribosomal protein S7; RNA-binding, decoding center 100.0
1rss_A151 Ribosomal protein S7; RNA-binding, translation; 1. 100.0
3r8n_G151 30S ribosomal protein S7; protein biosynthesis, RN 100.0
1hus_A155 Ribosomal protein S7; RNA-binding protein, decodin 100.0
3gty_S149 TF, 30S ribosomal protein S7; chaperone-client com 100.0
3i1m_G179 30S ribosomal protein S7; ribosome structure, prot 100.0
3bbn_G155 Ribosomal protein S7; small ribosomal subunit, spi 100.0
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Back     alignment and structure
Probab=100.00  E-value=3.8e-78  Score=517.28  Aligned_cols=204  Identities=69%  Similarity=1.051  Sum_probs=191.8

Q ss_pred             CccccccCCCCCCCCCCcccceeccCCCCceecCCCCccceeeccCCcceeeecCCCccccccccccCchhHHHHHHHhh
Q 028585            1 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM   80 (207)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~lf~kw~~~~v~v~D~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM   80 (207)
                      |+++...+|.+......++|||||||++||+|+||||++||+++   +++|+|||+|||++|+|+|++||+|+||||+||
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~---~~~~~pht~gr~~~krf~K~~~piv~rliN~LM   98 (225)
T 3u5c_F           22 PVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVR---QPIFVAHTAGRYANKRFRKAQCPIIERLTNSLM   98 (225)
T ss_dssp             CCCCSSCCCHHHHHHHHSSCCSSSCCCSSCCCSSTTTBTTBCCC---SCCSSSCCCCCCSSSTTGGGGSCHHHHHHHHHS
T ss_pred             hhhhccccchhhhccchhhhhcCCCCCcceEEeccchhheeecc---CCceecccCCCccccCCCCCCCcHHHHHHHHHH
Confidence            34444444444332235799999999999999999999999997   599999999999999999999999999999999


Q ss_pred             cCCCCCccHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEEEeeecChhHHHHHHHHHHHHH
Q 028585           81 MHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTG  160 (207)
Q Consensus        81 ~~g~~~GKK~~A~rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~vpv~vsp~rr~~lAirwI~~~  160 (207)
                      ++|+|+|||++|++||++||++|+++|++|||+||++||+|++|+++++|+|+||.+||+||+|+|.||+++||+||+++
T Consensus        99 ~~~~~~GKKs~A~~Ivy~AfeiI~~kT~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~tyqVPVeV~p~Rr~~LAiRWIi~a  178 (225)
T 3u5c_F           99 MNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIG  178 (225)
T ss_dssp             CSGGGSSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHTTSCSEEEECCCSSSSCCCEEEECCHHHHHHHHHHHHHHH
T ss_pred             hcCccCCcHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHhCCCCeeEEEeccCCEEEEEeeecCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCcCcHHHHHHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585          161 ARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR  207 (207)
Q Consensus       161 ar~~~~r~~k~~~e~LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR  207 (207)
                      |++++||++++|++|||+|||+|++|+|+||||+||||+||||+|||
T Consensus       179 ark~~~R~~ksmaerLA~ELidAa~~~G~s~AiKKKee~HRmAeANR  225 (225)
T 3u5c_F          179 AREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR  225 (225)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHTC
T ss_pred             HHhhccCCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999998
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T Back     alignment and structure
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris} Back     alignment and structure
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Back     alignment and structure
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ... Back     alignment and structure
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1 Back     alignment and structure
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} Back     alignment and structure
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ... Back     alignment and structure
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 207
d1iqva_201 a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyroc 9e-78
d1rssa_145 a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermo 8e-37
d1husa_139 a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stear 1e-35
d2qalg1150 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherich 1e-33
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 Back     information, alignment and structure

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  229 bits (586), Expect = 9e-78
 Identities = 86/205 (41%), Positives = 117/205 (57%), Gaps = 20/205 (9%)

Query: 19  VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNS 78
           +K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N 
Sbjct: 1   IKVMGRWSTEDVEVKDPSLKPYINLEP----RLLPHTHGRHAKKHFGKANVHIVERLINK 56

Query: 79  LMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINS 122
           +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+
Sbjct: 57  VMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 116

Query: 123 GPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELIN 182
            PRED T +   G+    AVDISPLRR++ A+  I  GA    +R   + AE LA+E+I 
Sbjct: 117 APREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 176

Query: 183 AAKGSSNSYAIKKKDEIERVAKANR 207
           AA     SYA  KK EIER+A+++R
Sbjct: 177 AANKDPKSYAYSKKLEIERIAESSR 201
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 Back     information, alignment and structure
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
d1iqva_201 Ribosomal protein S7 {Archaeon Pyrococcus horikosh 100.0
d2qalg1150 Ribosomal protein S7 {Escherichia coli [TaxId: 562 100.0
d1husa_139 Ribosomal protein S7 {Bacillus stearothermophilus 100.0
d1rssa_145 Ribosomal protein S7 {Thermus thermophilus [TaxId: 100.0
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4.4e-76  Score=496.78  Aligned_cols=185  Identities=46%  Similarity=0.669  Sum_probs=163.7

Q ss_pred             ccceeccCCCCceecCCCCccceeeccCCcceeeecCCCccccccccccCchhHHHHHHHhhcCCCC-------------
Q 028585           19 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN-------------   85 (207)
Q Consensus        19 ~~lf~kw~~~~v~v~D~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM~~g~~-------------   85 (207)
                      ||||||||++||+|+||||++||+|+    |.++|||+|||++++|.|++|||||||||.||++|+|             
T Consensus         1 iklf~kw~~~~v~v~d~~l~~yi~~~----~~~~pht~gr~~~~~f~k~~~~iVERlin~lM~~G~~~~~~~~~~~~~~h   76 (201)
T d1iqva_           1 IKVMGRWSTEDVEVKDPSLKPYINLE----PRLLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREH   76 (201)
T ss_dssp             CCBTTTBCCTTCCCCCTTTGGGSBCS----CC------------------CBHHHHHHHHHHTTCCC-------------
T ss_pred             CCccCCcCCccceEcCcchhheeecC----ceeecccccchhhhhcccccchHHHHHHHHhhhccccccccccccchhcc
Confidence            69999999999999999999999998    7899999999999999999999999999999999998             


Q ss_pred             ---CccHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCCccceeeeecCCeeEEEeeecChhHHHHHHHHHHHHHHH
Q 028585           86 ---NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGAR  162 (207)
Q Consensus        86 ---~GKK~~A~rIv~~af~iI~~~t~~nPi~vl~~AI~N~~P~~e~~ri~~gG~~~~vpv~vsp~rr~~lAirwI~~~ar  162 (207)
                         +|||++|++||++||++|++.|++||++||++||+|++|++|++++++||++||+||||+|+||+++||+||+++|+
T Consensus        77 ~~~~GKK~~A~kIv~~A~~iI~~kt~~nPl~Vl~~AI~N~~P~~Ev~~~r~GG~~yqvPv~vsp~Rr~~lAirwI~~~ar  156 (201)
T d1iqva_          77 RSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGAS  156 (201)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhhcceEEEEEEecCCcccccCeeeCHHHHHHHHHHHHHHHHH
Confidence               89999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCcCcHHHHHHHHHHHHHcCCCChhhhHhhHHHHHHHHhcC
Q 028585          163 ESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR  207 (207)
Q Consensus       163 ~~~~r~~k~~~e~LA~EiI~A~~~~g~s~aikKK~elhr~A~aNR  207 (207)
                      +++||+.++|++|||+|||+|++|+|+||||+||||+||+|+|||
T Consensus       157 ~~~~r~~ks~~e~LA~Eii~Aa~~~~ks~AikKKeE~hk~A~aNR  201 (201)
T d1iqva_         157 AKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR  201 (201)
T ss_dssp             HHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred             HhcCCCCCCHHHHHHHHHHHHHcCCCCcceEeehHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999998
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure