Citrus Sinensis ID: 028592

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSSARRRKGVPHRAPFGS
Secondary Structure (PSIPRED)
cccccccccHHHHHccccccccccccccccccccEEEcccccccccccccccccccccEEEEEEcccccEEEcccccEEEEccccEEEEEcccEEEEccccccccccccccccccccccccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHccccHHccccccccccEEEEEcccccccHHccccccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEcccEEEEEccccccccccccccccHHHHccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccc
Coil and Loop (DISEMBL)
measlvppwlepmlrtAFFTVCRthgdaarsecnmycldcndqafcfycrsskhkdhqvIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFlnerpqprsgkgvaHICEICgrslldpfrfcslgcklagikrdgnasfTLEIKNEAFMERKEGISRQVSSRKQEELredsqhdiypptthkppssarrrkgvphrapfgs
Flexible Loop (DISEMBL)
measlvppwlepmlRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNerpqprsgkgvAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEafmerkegisrqvssrkqeelredsqhdiypptthkppssarrrkgvphrapfgs
Low Complexity Region (SEG)
MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSSARRRKGVPHRAPFGS
Disordered region (IsUnstruct)
*****VPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNER****SGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIK*********************************************************
Disordered Region (DISOPRED)
****LVP**LEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFL**************ICEICGRSLLDPFRFCSLGCKLAG****************************************************************HRAPF**
Disordered Region (DISEMBL)
MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKE******************QHDIYPPT**********************
Disordered Region (DISPRO)
****LVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKR********************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTTHKPPSSARRRKGVPHRAPFGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
P0CB19	110	Uncharacterized protein A	no	no	0.473	0.890	0.300	2e-05

>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana GN=At3g50808 PE=4 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 35/133 (26%)

Query: 80  MDISGVQTYVINSARVVFLNER---PQPRSGKGVAHICEICGRSL--LDPFRFCSLGCKL 134
           MDISG+  Y IN   +V++N+R      RS   V H C+IC   +       FCS+ CK 
Sbjct: 5   MDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSMECKF 64

Query: 135 AGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQH--DIYPPTTHKPPSS 192
                                       R V   + +EL E+S    +I           
Sbjct: 65  ----------------------------RSVLGSQLDELMENSSEVTEISEEIDEPVMKK 96

Query: 193 ARRRKGVPHRAPF 205
             RRKG PHRAPF
Sbjct: 97  RHRRKGSPHRAPF 109

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
356533371	208	PREDICTED: uncharacterized protein LOC10	0.990	0.985	0.790	2e-92
356548377	209	PREDICTED: uncharacterized protein LOC10	0.990	0.980	0.786	9e-91
297740001	204	unnamed protein product [Vitis vinifera]	0.975	0.990	0.801	2e-90
224069697	202	predicted protein [Populus trichocarpa]	0.975	1.0	0.792	6e-90
255556796	208	protein with unknown function [Ricinus c	0.980	0.975	0.782	6e-88
224138806	201	predicted protein [Populus trichocarpa]	0.956	0.985	0.795	4e-87
357440323	203	hypothetical protein MTR_1g062160 [Medic	0.975	0.995	0.723	7e-84
224054246	209	predicted protein [Populus trichocarpa]	1.0	0.990	0.698	2e-83
357510907	206	hypothetical protein MTR_7g102790 [Medic	0.975	0.980	0.746	3e-83
356570794	213	PREDICTED: uncharacterized protein LOC10	0.975	0.948	0.724	3e-82

>gi|356533371|ref|XP_003535238.1| PREDICTED: uncharacterized protein LOC100809455 [Glycine max]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 166/210 (79%), Positives = 184/210 (87%), Gaps = 5/210 (2%)

Query: 1   MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVI 60
           M   LVPPWLEP+L T+FF VCR HGDAARSECNM+CLDCN+ AFCFYCRSSKHKDHQVI
Sbjct: 1   MGTMLVPPWLEPLLNTSFFNVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVI 60

Query: 61  QIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRS 120
           QIRRSSYHDVVRV EIQ ++DISGVQTYVINSARV+FLNERPQP+SGKGVAHICEICGRS
Sbjct: 61  QIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRS 120

Query: 121 LLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQ-VSSR--KQEELREDS 177
           LLDPFRFCSLGCKL GIKR+G+ASFTL+ KNEA     EG+SR+ VSSR  ++EELRE S
Sbjct: 121 LLDPFRFCSLGCKLVGIKRNGDASFTLDAKNEA--STMEGMSRRSVSSRHHQEEELREGS 178

Query: 178 QHDIYPPTTHKPPSSARRRKGVPHRAPFGS 207
           Q D+YP T   P S+ARRRKG+PHRAPFGS
Sbjct: 179 QQDMYPATPSPPASNARRRKGIPHRAPFGS 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548377|ref|XP_003542579.1| PREDICTED: uncharacterized protein LOC100779070 [Glycine max]

 Score =  338 bits (866), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 166/211 (78%), Positives = 183/211 (86%), Gaps = 6/211 (2%)

Query: 1   MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVI 60
           M   LVPPWLEP+L T+FF VCR HGDAARSECNM+CLDCN+ AFCFYCRSSKHKDHQVI
Sbjct: 1   MGTMLVPPWLEPLLNTSFFDVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVI 60

Query: 61  QIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRS 120
           QIRRSSYHDVVRV EIQ ++DISGVQTYVINSARV+FLNERPQP+SGKGVAHICEICGRS
Sbjct: 61  QIRRSSYHDVVRVAEIQTVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRS 120

Query: 121 LLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQ-VSSR--KQEELREDS 177
           LLDPFRFCSLGCKL GIKR+G+ASF L+ KNEA     EG+SR+ VSSR  ++EELRE S
Sbjct: 121 LLDPFRFCSLGCKLVGIKRNGDASFALDAKNEA--STMEGMSRRSVSSRHHQEEELREGS 178

Query: 178 QHDIYPPTTHKPPSS-ARRRKGVPHRAPFGS 207
           Q D+YP T   P SS ARRRKG+PHRAPFGS
Sbjct: 179 QQDMYPATPSPPASSNARRRKGIPHRAPFGS 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740001|emb|CBI30183.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 162/202 (80%), Positives = 181/202 (89%)

Query: 6   VPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRS 65
           VPPWLEP+L T FF++CRTHGDAARSECNMYCLDC+  +FCFYCRSS+HKDHQVIQIRRS
Sbjct: 3   VPPWLEPLLTTPFFSICRTHGDAARSECNMYCLDCSGDSFCFYCRSSRHKDHQVIQIRRS 62

Query: 66  SYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPF 125
           SYHDVVRV EIQ ++DISGVQTYVINSARV+FLNERPQP++GKGV+HICE CGRSLLDPF
Sbjct: 63  SYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPKTGKGVSHICETCGRSLLDPF 122

Query: 126 RFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPT 185
           RFCSLGCKL GIKR+G+ASF+LE KNE  MER EGISR+ SSR ++ELRE  Q DIYPPT
Sbjct: 123 RFCSLGCKLVGIKRNGDASFSLEAKNEMAMERGEGISRRESSRDEDELREGLQQDIYPPT 182

Query: 186 THKPPSSARRRKGVPHRAPFGS 207
              PPSSARRRKG+PHRAPF S
Sbjct: 183 PPPPPSSARRRKGIPHRAPFAS 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069697|ref|XP_002326397.1| predicted protein [Populus trichocarpa] gi|222833590|gb|EEE72067.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (860), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 164/207 (79%), Positives = 180/207 (86%), Gaps = 5/207 (2%)

Query: 1   MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVI 60
           M+  LVPPWLE +L T FFTVCRTH DAARSECNMYCLDC   AFCFYCRSS+HKDHQV+
Sbjct: 1   MDKMLVPPWLESLLSTQFFTVCRTHEDAARSECNMYCLDCEGDAFCFYCRSSRHKDHQVV 60

Query: 61  QIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRS 120
           QIRRSSYHDVVRV EIQ ++D SGVQTYVINSARV+FLNERPQP+SGKGVAHICEICGRS
Sbjct: 61  QIRRSSYHDVVRVSEIQKVLDTSGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRS 120

Query: 121 LLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHD 180
           LLDPFRFCSLGCKL G+KR+G+ASFTLE KNEA M R+EGIS +     +E+LRE SQ D
Sbjct: 121 LLDPFRFCSLGCKLEGVKRNGDASFTLEAKNEALMGRREGISGE-----EEDLREGSQQD 175

Query: 181 IYPPTTHKPPSSARRRKGVPHRAPFGS 207
           IYPPT   PPSSARRRKG+PHRAPFGS
Sbjct: 176 IYPPTPPPPPSSARRRKGIPHRAPFGS 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556796|ref|XP_002519431.1| protein with unknown function [Ricinus communis] gi|223541294|gb|EEF42845.1| protein with unknown function [Ricinus communis]

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 162/207 (78%), Positives = 179/207 (86%), Gaps = 4/207 (1%)

Query: 5   LVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRR 64
           LVPPWLE +L TAFF++CRTHGDAARSECNMYCLDC   AFCFYCRSS+HKDHQVIQIRR
Sbjct: 2   LVPPWLESLLSTAFFSICRTHGDAARSECNMYCLDCRGDAFCFYCRSSRHKDHQVIQIRR 61

Query: 65  SSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDP 124
           SSYHDVVRV EIQ ++DISGVQTYVINSARV+FLNERPQP+SGKGVAHICEICGRSLLD 
Sbjct: 62  SSYHDVVRVAEIQKVIDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDT 121

Query: 125 FRFCSLGCKLAGIKRDGNASFTLEIKN-EAFMERKEGISRQ--VSSRKQEELREDSQHDI 181
           FRFCSLGCK+ GIKR+G+ASF+LE KN E  MER+EGI+ +  VS R+ EELRE SQ DI
Sbjct: 122 FRFCSLGCKVVGIKRNGDASFSLEAKNEEELMERREGITSRIVVSRREDEELREGSQQDI 181

Query: 182 Y-PPTTHKPPSSARRRKGVPHRAPFGS 207
           Y P     P SSARRRKG+PHRAPF S
Sbjct: 182 YPPTPPPPPTSSARRRKGIPHRAPFKS 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138806|ref|XP_002322906.1| predicted protein [Populus trichocarpa] gi|222867536|gb|EEF04667.1| predicted protein [Populus trichocarpa]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 163/205 (79%), Positives = 177/205 (86%), Gaps = 7/205 (3%)

Query: 5   LVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRR 64
           LVPPWLE +L T+FFTVCRTHGDAAR+ECNMYCLDC   AFCFYCRSS+HKDHQVIQIRR
Sbjct: 2   LVPPWLESLLSTSFFTVCRTHGDAARNECNMYCLDCEGGAFCFYCRSSRHKDHQVIQIRR 61

Query: 65  SSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDP 124
           SSYHDVVRV EIQ ++DISGVQTYVINSARV+FL ERPQP+ GKGVAHIC ICGRSLLDP
Sbjct: 62  SSYHDVVRVTEIQKVLDISGVQTYVINSARVLFLKERPQPKYGKGVAHICVICGRSLLDP 121

Query: 125 FRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDS--QHDIY 182
           FRFCSLGCKL G+KR+G ASFT+E KNEA MER+EGI     SR +EELRE S  Q DIY
Sbjct: 122 FRFCSLGCKLVGVKRNGEASFTIEAKNEALMERREGI-----SRGEEELREGSQQQQDIY 176

Query: 183 PPTTHKPPSSARRRKGVPHRAPFGS 207
           PPT   P SSARRRKG+PHRAPFGS
Sbjct: 177 PPTPPPPSSSARRRKGIPHRAPFGS 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440323|ref|XP_003590439.1| hypothetical protein MTR_1g062160 [Medicago truncatula] gi|355479487|gb|AES60690.1| hypothetical protein MTR_1g062160 [Medicago truncatula]

 Score =  315 bits (807), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 149/206 (72%), Positives = 167/206 (81%), Gaps = 4/206 (1%)

Query: 1   MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVI 60
           M+  LVP WL+P+L T FF  CR H DAARSECNM+CLDCN  AFCFYCRSSKHKDHQVI
Sbjct: 1   MDTMLVPKWLKPLLSTPFFNECRIHADAARSECNMFCLDCNVDAFCFYCRSSKHKDHQVI 60

Query: 61  QIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRS 120
           QIRRSSYHDVVRV EIQ ++DISGVQTYVINSARV+FLNERPQP+SGK V +ICEICGR 
Sbjct: 61  QIRRSSYHDVVRVAEIQKMLDISGVQTYVINSARVLFLNERPQPKSGKAVPYICEICGRG 120

Query: 121 LLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHD 180
           LLD  RFCSLGCKL GIKR+GNASF L+  N      +EG+SRQ    ++EELRE SQ  
Sbjct: 121 LLDQVRFCSLGCKLVGIKRNGNASFVLDANNNEVSTMEEGMSRQ----QEEELREGSQQG 176

Query: 181 IYPPTTHKPPSSARRRKGVPHRAPFG 206
           +YP T   PPS+ARRRKG+PHRAPFG
Sbjct: 177 MYPATPPTPPSNARRRKGIPHRAPFG 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054246|ref|XP_002298164.1| predicted protein [Populus trichocarpa] gi|222845422|gb|EEE82969.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 146/209 (69%), Positives = 173/209 (82%), Gaps = 2/209 (0%)

Query: 1   MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVI 60
           M+  LVPPWLE +L TAFFTVC  H DA RSECNM+CLDCN +AFCFYCRS++HKDH VI
Sbjct: 1   MQEMLVPPWLESLLSTAFFTVCPRHRDAPRSECNMFCLDCNTEAFCFYCRSTRHKDHSVI 60

Query: 61  QIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRS--GKGVAHICEICG 118
           QIRRSSYHDVVRV EIQ ++DI+GVQTYVINSARV+FLNERPQP+S   KGV H+CEICG
Sbjct: 61  QIRRSSYHDVVRVAEIQKVLDITGVQTYVINSARVLFLNERPQPKSSTSKGVPHLCEICG 120

Query: 119 RSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQ 178
           RSLLDPFRFCSLGCKL  IK +G+A+F L  K+E   E +EG+ R++ S+++EELRE SQ
Sbjct: 121 RSLLDPFRFCSLGCKLVRIKNNGDATFNLSTKDEEVGEMREGMGRRLPSKEEEELREGSQ 180

Query: 179 HDIYPPTTHKPPSSARRRKGVPHRAPFGS 207
            D+Y  T   P S++RRRKG+PHRAPFGS
Sbjct: 181 QDMYTSTLTPPHSNSRRRKGIPHRAPFGS 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510907|ref|XP_003625742.1| hypothetical protein MTR_7g102790 [Medicago truncatula] gi|355500757|gb|AES81960.1| hypothetical protein MTR_7g102790 [Medicago truncatula]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 174/209 (83%), Gaps = 7/209 (3%)

Query: 1   MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCN--DQAFCFYCRSSKHKDHQ 58
           M+  LVPPWLEP+L+T FF +CR H DAAR+ECNMYCLDCN  D AFCFYCRSS+HKDHQ
Sbjct: 1   MDTVLVPPWLEPLLKTPFFNICRIHADAARNECNMYCLDCNNGDGAFCFYCRSSRHKDHQ 60

Query: 59  VIQIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICG 118
           VIQIRRSSYHDVVRV EIQ ++DISGVQTYVINSARV+FLN RPQP+SGKGVAHICEICG
Sbjct: 61  VIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICG 120

Query: 119 RSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQ 178
           RSLLD FRFCSLGCKL  IK++G+ASF LE KNE      EG+S   SSR +EELRE S 
Sbjct: 121 RSLLDSFRFCSLGCKLERIKKNGDASFALEGKNEGLT--MEGVS---SSRSEEELREGST 175

Query: 179 HDIYPPTTHKPPSSARRRKGVPHRAPFGS 207
            D+YP T   PP +ARRRKG+PHRAPFGS
Sbjct: 176 QDMYPLTPPPPPLNARRRKGIPHRAPFGS 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570794|ref|XP_003553569.1| PREDICTED: uncharacterized protein LOC100803083 [Glycine max]

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 150/207 (72%), Positives = 171/207 (82%), Gaps = 5/207 (2%)

Query: 3   ASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI 62
           A LVPPWLE +L T FF VCR H +AARSECNM+CL CN +AFCFYC SS+HKDHQVIQI
Sbjct: 10  AVLVPPWLEQLLHTPFFNVCRIHAEAARSECNMFCLHCNGEAFCFYCSSSRHKDHQVIQI 69

Query: 63  RRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLL 122
           RRSSYHDVVRV EIQ ++DISGVQTYVINSARV+FLN RPQP+SGKGVAHICEICGRSLL
Sbjct: 70  RRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLL 129

Query: 123 DPFRFCSLGCKLAGIKRDGNASFTLEIKNEAF-MERKEGISRQVSSRKQ-EELREDSQHD 180
           DPFRFCSLGCKL GI+++G+ASF L+ +NE   M+   G    VSSR+Q EELRE S  D
Sbjct: 130 DPFRFCSLGCKLEGIRKNGDASFALDGRNEELTMDTSRG---SVSSRQQEEELREGSTQD 186

Query: 181 IYPPTTHKPPSSARRRKGVPHRAPFGS 207
           +YP T     S++RRRKG+PHRAPFGS
Sbjct: 187 MYPATPSPSASNSRRRKGIPHRAPFGS 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.695	0.587	0.655	2.6e-55
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.946	0.920	0.54	2.9e-55
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.695	0.585	0.643	5.4e-55
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.855	0.936	0.533	2.1e-52
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.927	0.845	0.534	4.4e-52
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.966	0.925	0.473	2.3e-46
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.937	0.858	0.463	7.1e-45
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.719	0.608	0.434	6.9e-32
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.608	0.492	0.460	3e-31
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.908	0.773	0.346	1.2e-26

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 95/145 (65%), Positives = 116/145 (80%)

Query:     7 PPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSS 66
             PPWL PMLR  +F  C  H  + +SECNM+CLDC+ +AFC YC  + H++H+V+QIRRSS
Sbjct:    18 PPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLN-HRNHRVLQIRRSS 76

Query:    67 YHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFR 126
             YH+VVRV EIQ  +DIS VQTY+INSAR+VFLNERPQPR GKGV + CEIC RSLLD FR
Sbjct:    77 YHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEICCRSLLDSFR 136

Query:   127 FCSLGCKLAGIKRDGNASFTLEIKN 151
             FCSLGCKL G+KRD + +F+L  K+
Sbjct:   137 FCSLGCKLGGMKRDPSLTFSLRGKH 161

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 108/200 (54%), Positives = 135/200 (67%)

Query:     7 PPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSS 66
             P WL+P+LR  FF  C+ H D+ +SECNMYCLDC +   C  C S  HKDH  IQIRRSS
Sbjct:    12 PHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSF-HKDHHAIQIRRSS 70

Query:    67 YHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFR 126
             YHDV+RV EIQ  +DI+GVQTYVINSA+VVFLNERPQPR GKGV + CE+C RSL+D FR
Sbjct:    71 YHDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFR 130

Query:   127 FCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPPTT 186
             FCSLGCK++GI +     +T  + +         I R    +K +++  +S     PP +
Sbjct:   131 FCSLGCKISGISKKKRKEWTNNLSDSDDSYSSTSIGRL---KKNDDIMNNSFTPSTPPLS 187

Query:   187 HKPPSSARRRKGVPHRAPFG 206
                   A+RRKG+PHRAPFG
Sbjct:   188 AVNRRIAKRRKGIPHRAPFG 207

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 94/146 (64%), Positives = 115/146 (78%)

Query:     7 PPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSS 66
             PPWL PMLR ++F  C  H D+ ++ECN++CLDC   AFC YC   KHKDH+V+QIRRSS
Sbjct:    16 PPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLV-KHKDHRVVQIRRSS 74

Query:    67 YHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFR 126
             YH+VVRV EIQ  +DI+ VQTY+INSA++VFLNERPQPR GKGV + CEIC RSLLD FR
Sbjct:    75 YHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSLLDSFR 134

Query:   127 FCSLGCKLAGIKRDGNASFTLEIKNE 152
             FCSLGCKL G++R G+ S T  +K +
Sbjct:   135 FCSLGCKLGGMRR-GDLSLTFSLKGK 159

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 112/210 (53%), Positives = 144/210 (68%)

Query:     7 PPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSS 66
             P WLE +LRT FF++C  H +  R+ECNM+CL C + AFCFYCRSS H DH V+QIRRSS
Sbjct:     4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query:    67 YHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSG---------KGVAHICEIC 117
             YHDVVRV EI+N +DI GVQTYVINSARV+FLNERPQP++          K +++ CE C
Sbjct:    64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query:   118 GRSLLDPFRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDS 177
              R+LLDPFRFCSLGCK+ G++           KN+   E +E        R ++E ++++
Sbjct:   124 CRTLLDPFRFCSLGCKVEGMR-----------KNK---EEEE-------ERLRKERQQET 162

Query:   178 QHDIYPPTTHKPPSSARRRKGVPHRAPFGS 207
                 +PPT H   S++RRRKG+PHRAPF S
Sbjct:   163 HKGTHPPT-HT--SNSRRRKGIPHRAPFAS 189

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 108/202 (53%), Positives = 134/202 (66%)

Query:     7 PPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSS 66
             PPWL+P+L+  FF  C+ HGD+ +SECNMYCLDC +   C  C +  HKDH+ IQIRRSS
Sbjct:    34 PPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAH-HKDHRTIQIRRSS 92

Query:    67 YHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDP-F 125
             YHDV+RV EIQ  +DI G+QTYVINSA+VVFLNERPQPR GKGV + C++C RSL+D  F
Sbjct:    93 YHDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCYRSLVDDSF 152

Query:   126 RFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQEELREDSQHDIYPP- 184
             RFCSLGCK+AG  R     F    +N   ME ++  S     +    L+  S     PP 
Sbjct:   153 RFCSLGCKIAGTSR----GFEKGREN-LLMETEDSSSSIAIGKNITNLQSFSPST--PPL 205

Query:   185 TTHKPPSSARRRKGVPHRAPFG 206
             TT       +RRKG+PHR+P G
Sbjct:   206 TTSSNCRIVKRRKGIPHRSPMG 227

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 100/211 (47%), Positives = 134/211 (63%)

Query:     5 LVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRR 64
             + PPWL PMLR  +F  C  H  +++SECN++CLDC+  AFC  C +  H+ H+VIQIRR
Sbjct:     7 MTPPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAH-HRTHRVIQIRR 65

Query:    65 SSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDP 124
             SSYH+VVRV EIQ  +DIS +QTYVINSA++ FLN RPQ R+GK +   C+IC R+LLD 
Sbjct:    66 SSYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSRNLLDS 125

Query:   125 FRFCSLGCKLAGIKRDGNASFTLEIKNEAFMERK---EGI-SRQVS--SRKQEELREDSQ 178
             F FCSL CKL G+K   + + TL    ++    K    GI SR +   S   ++ R ++ 
Sbjct:   126 FLFCSLACKLEGVKNGEDPNLTLFHSGKSDDSSKIINTGICSRLIDGISIAVDDQRSETA 185

Query:   179 HDIYPPT----THKPPSSARRRKGVPHRAPF 205
               + P T    +H+      RRKG+P RAPF
Sbjct:   186 GVLSPETPSIESHRNYPMKSRRKGIPQRAPF 216

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 94/203 (46%), Positives = 125/203 (61%)

Query:     7 PPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSS 66
             P WL+P+L   FF  C+ HG   R+EC MYCLDC + +FC  C S +H++H+ IQIR SS
Sbjct:    28 PIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLS-EHENHRTIQIRISS 86

Query:    67 YHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDP-F 125
             YH+V +V EIQ  +DIS +QTYVINS++V+FLNERPQ + GKG  + C +C R L +  F
Sbjct:    87 YHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGLAENCF 146

Query:   126 RFCSLGCKLAGIKRDGNASFTLEIKNEAFMERKEGISRQVSSRKQ-EELREDSQHDIYPP 184
             RFCS+GCK+AG     +  F   +K+          S  V +     E    +   + PP
Sbjct:   147 RFCSIGCKVAGT----SGVFQKRVKHTTNDSDNSNNSSGVENNSSGAENGNSNLQSLSPP 202

Query:   185 TTHKPPSSARRR--KGVPHRAPF 205
             T   PP S R+R  KG+PHRAPF
Sbjct:   203 TPQFPPRSLRKRLRKGIPHRAPF 225

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 66/152 (43%), Positives = 90/152 (59%)

Query:     1 MEASLVPPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVI 60
             ME+   P WLE +L+  FF  C  H D  ++E N+ C+DC     C +C SS H  H+++
Sbjct:     1 MESGEFPAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCC-LTICPHCLSS-HTSHRLL 58

Query:    61 QIRRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRS 120
             QIRR  Y DV+RV +   +MD S +Q Y  NS++VVF+NERPQ R  +G  +IC  C RS
Sbjct:    59 QIRRYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRS 118

Query:   121 LLDPFRFCSLGCKLAG-IKRDGNASFTLEIKN 151
             L  P+ FC L CK++  I R    S  L + N
Sbjct:   119 LQSPYLFCCLSCKISDVIMRQRGLSGFLRVCN 150

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
 Identities = 59/128 (46%), Positives = 83/128 (64%)

Query:     7 PPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSS 66
             P WL+ +    FF  C  H  A ++E N+ CLDC   + C +C  S H+ H+++Q+RR  
Sbjct:     6 PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCT-SLCPHCVPS-HRFHRLLQVRRYV 63

Query:    67 YHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFR 126
             YHDVVR+ ++Q ++D S VQ Y INSA+VVF+ +RPQ R  KG  + C  C RSL +P+ 
Sbjct:    64 YHDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYI 123

Query:   127 FCSLGCKL 134
              CSLGCK+
Sbjct:   124 HCSLGCKV 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 69/199 (34%), Positives = 110/199 (55%)

Query:     7 PPWLEPMLRTAFFTVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQIRRSS 66
             P WLE ++   FF+ C  H    +SE N++CL C   + C +C  S H+ H ++Q+RR  
Sbjct:    19 PAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCC-LSVCPHCLPS-HRSHPLLQVRRYV 76

Query:    67 YHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFR 126
             YHDVVR+ +++ ++D S VQ Y IN A+V+FLN+R Q R+ K  +++C  C R L +PF 
Sbjct:    77 YHDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSRA-KVSSNVCFTCDRILQEPFH 135

Query:   127 FCSLGCKLAGIKRDGN--ASFTLEIKNEAF-ME--RKEGISR--QVSSRKQ-EELREDSQ 178
             FCSL CK+  +   G+  +S    I    F  E  R +G  +  ++S+ +  E++   S 
Sbjct:   136 FCSLSCKVDYLSYQGDDLSSILYRIDESDFTFEGLRMDGHDQLGEISTMEDGEDILVISD 195

Query:   179 HDIYPPTTHKPPSSARRRK 197
                    +HK      ++K
Sbjct:   196 ESEQGNNSHKKEKKKSKKK 214

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00280263 hypothetical protein (202 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	8e-43
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	0.001

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  137 bits (348), Expect = 8e-43
 Identities = 58/72 (80%), Positives = 64/72 (88%)

Query: 63  RRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLL 122
           RRSSYHDVVRV +IQ ++DISGVQTYVINSA+VVFLNERPQ R GKG  +ICE C RSLL
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 123 DPFRFCSLGCKL 134
           DPFRFCSLGCK+
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 20 TVCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI 62
            C +HGD        +C +C     C  C  ++H+ H V+ +
Sbjct: 4  PKCDSHGDE---PAEFFCEEC-GALLCRTCDEAEHRGHTVVLL 42

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.64
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	95.95
smart00336	42	BBOX B-Box-type zinc finger.	94.98
PRK01343	57	zinc-binding protein; Provisional	88.65
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	88.54
COG3024	65	Uncharacterized protein conserved in bacteria [Fun	86.76
PRK00418	62	DNA gyrase inhibitor; Reviewed	86.45
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	85.58

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=1.2e-40  Score=245.01  Aligned_cols=72  Identities=69%  Similarity=1.204  Sum_probs=71.1

Q ss_pred             EeccccceeeechhhhhhcccceeEEEECCcEEEEeecCCCCCCCCCCcccccccccccCCCCeeeeeccee
Q 028592           63 RRSSYHDVVRVGEIQNIMDISGVQTYVINSARVVFLNERPQPRSGKGVAHICEICGRSLLDPFRFCSLGCKL  134 (207)
Q Consensus        63 RRssY~dVVrv~dIqkl~DiS~IQtYvINsakVVfLn~RPq~r~~kg~~~~C~~C~R~L~d~~rFCSl~CKv  134 (207)
                      |||||||||||.|||||||||+||||+|||+||||||+|||+++.+++++.|++|+|+|+|+|+||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999996

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.64  E-value=0.00042  Score=44.63  Aligned_cols=38  Identities=34%  Similarity=0.884  Sum_probs=29.8

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccCCCCCCCceEEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI   62 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   62 (207)
                      .|..|..   .+.++||.+|.. .+|..|....|++|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~~-~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCNE-PLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTTE-EEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCCC-ccCccCCCCCCCCCEEeEC
Confidence            5888864   238899999985 9999997667999988754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=95.95  E-value=0.0045  Score=38.65  Aligned_cols=37  Identities=24%  Similarity=0.671  Sum_probs=28.3

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccCCCCCCCceEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQ   61 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQ   61 (207)
                      .|+.|..   +.-.+||.+|.. .+|..|....|++|.++-
T Consensus         2 ~C~~H~~---~~~~~fC~~~~~-~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDRA-LLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccCh-hhhhhcChhhcCCCCEee
Confidence            4777743   235899999985 899999666699997764

>smart00336 BBOX B-Box-type zinc finger

Probab=94.98  E-value=0.018  Score=36.32  Aligned_cols=36  Identities=31%  Similarity=0.937  Sum_probs=27.9

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccCCCCCCCceE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVI   60 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~Hrvl   60 (207)
                      .|..|..   ..-.+||.+|.. .+|..|....|++|+++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~~-~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECGA-LLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCCc-ccccccChhhcCCCcee
Confidence            4777754   235899999985 99999965679999775

>PRK01343 zinc-binding protein; Provisional

Probab=88.65  E-value=0.12  Score=36.97  Aligned_cols=29  Identities=28%  Similarity=0.637  Sum_probs=23.2

Q ss_pred             cccccccccccCCCC-eeeeecceeceeec
Q 028592          111 AHICEICGRSLLDPF-RFCSLGCKLAGIKR  139 (207)
Q Consensus       111 ~~~C~~C~R~L~d~~-rFCSl~CKv~~~~~  139 (207)
                      ...|-+|++.....| -|||-.||..++.+
T Consensus         9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~   38 (57)
T PRK01343          9 TRPCPECGKPSTREAYPFCSERCRDIDLNR   38 (57)
T ss_pred             CCcCCCCCCcCcCCCCcccCHHHhhhhHHH
Confidence            468999999987665 59999999766543

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=88.54  E-value=0.058  Score=38.46  Aligned_cols=29  Identities=48%  Similarity=1.000  Sum_probs=18.1

Q ss_pred             cccccccccccCC----CCe-eeeecceeceeec
Q 028592          111 AHICEICGRSLLD----PFR-FCSLGCKLAGIKR  139 (207)
Q Consensus       111 ~~~C~~C~R~L~d----~~r-FCSl~CKv~~~~~  139 (207)
                      +..|-+|++...-    +|+ |||-.||+..+.+
T Consensus         2 ~v~CP~C~k~~~~~~~n~~rPFCS~RCk~iDLg~   35 (57)
T PF03884_consen    2 TVKCPICGKPVEWSPENPFRPFCSERCKLIDLGR   35 (57)
T ss_dssp             EEE-TTT--EEE-SSSSS--SSSSHHHHHHHHS-
T ss_pred             cccCCCCCCeecccCCCCcCCcccHhhcccCHHH
Confidence            4579999998875    676 9999999876654

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.76  E-value=0.18  Score=36.91  Aligned_cols=29  Identities=41%  Similarity=0.953  Sum_probs=23.1

Q ss_pred             cccccccccccCC----CCe-eeeecceeceeec
Q 028592          111 AHICEICGRSLLD----PFR-FCSLGCKLAGIKR  139 (207)
Q Consensus       111 ~~~C~~C~R~L~d----~~r-FCSl~CKv~~~~~  139 (207)
                      +..|-+|++...-    +|| |||-.||+-.+.+
T Consensus         7 ~v~CP~Cgkpv~w~~~s~frPFCSkRCklIDLg~   40 (65)
T COG3024           7 TVPCPTCGKPVVWGEESPFRPFCSKRCKLIDLGE   40 (65)
T ss_pred             cccCCCCCCcccccccCCcCcchhHhhhhcchhh
Confidence            4579999998864    666 9999999876654

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=86.45  E-value=0.17  Score=36.71  Aligned_cols=29  Identities=38%  Similarity=0.944  Sum_probs=22.5

Q ss_pred             cccccccccccC----CCCe-eeeecceeceeec
Q 028592          111 AHICEICGRSLL----DPFR-FCSLGCKLAGIKR  139 (207)
Q Consensus       111 ~~~C~~C~R~L~----d~~r-FCSl~CKv~~~~~  139 (207)
                      ...|-+|++...    .+|| |||-.||+..+.+
T Consensus         6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~   39 (62)
T PRK00418          6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLIDLGE   39 (62)
T ss_pred             cccCCCCCCcccccCCCCcCCcccHHHHhhhHHH
Confidence            567999999874    3575 9999999866543

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=85.58  E-value=0.17  Score=34.12  Aligned_cols=28  Identities=25%  Similarity=0.656  Sum_probs=23.5

Q ss_pred             ccccccccccc---CCCCeeeeecceeceee
Q 028592          111 AHICEICGRSL---LDPFRFCSLGCKLAGIK  138 (207)
Q Consensus       111 ~~~C~~C~R~L---~d~~rFCSl~CKv~~~~  138 (207)
                      .+.|.+|+|-+   .+...|||-.|++....
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~~   36 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQE   36 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHhhh
Confidence            46799999999   66789999999986543

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	95.65
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	95.29
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.28
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.13
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	94.68
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	93.39
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	93.26
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	93.25
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.35
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	90.34
2w0t_A	43	Lethal(3)malignant brain tumor-like 2 protein; zin	89.98
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	81.66

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=95.65  E-value=0.0022  Score=41.64  Aligned_cols=38  Identities=29%  Similarity=0.666  Sum_probs=30.0

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccCCCCCCCceEEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI   62 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   62 (207)
                      .|..|...   .-++||.+|.. .+|..|....|++|+++-|
T Consensus         8 ~C~~H~~e---~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l   45 (50)
T 2yvr_A            8 YCNVHKHE---PLVLFCESCDT-LTCRDCQLNAHKDHQYQFL   45 (50)
T ss_dssp             BCSSSTTC---BCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred             cCcCCCCC---CEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence            48888542   37899999985 8999997778999977643

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=95.29  E-value=0.0095  Score=37.22  Aligned_cols=36  Identities=31%  Similarity=0.742  Sum_probs=28.7

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ   61 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   61 (207)
                      .|..|..    .-.+||.+|.. .+|..|.. ..|++|+++.
T Consensus         5 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhCC----eeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence            4888852    47799999985 89999965 6899998753

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.28  E-value=0.0046  Score=41.82  Aligned_cols=37  Identities=35%  Similarity=0.852  Sum_probs=29.1

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ   61 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   61 (207)
                      .|..|...   .-++||.+|.. .+|..|.. ..|++|+++-
T Consensus        10 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~   47 (64)
T 2d8u_A           10 MCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVAP   47 (64)
T ss_dssp             CCSSCTTC---CCCSEESSSCC-CCCSHHHHSSSTTSSCEEC
T ss_pred             cCcCcCCC---ccceEcCcCCc-eeCccccCCCcCCCCCeeC
Confidence            58888542   37899999985 99999954 5899987664

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.13  E-value=0.0051  Score=39.75  Aligned_cols=39  Identities=33%  Similarity=0.818  Sum_probs=30.3

Q ss_pred             hhccccCCCCCCCCceecccCCCccccCccc-CCCCCCCceEEE
Q 028592           20 TVCRTHGDAARSECNMYCLDCNDQAFCFYCR-SSKHKDHQVIQI   62 (207)
Q Consensus        20 ~~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQI   62 (207)
                      ..|..|...   .-++||.+|.. .+|..|. ...|++|+++.|
T Consensus         7 ~~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            7 PMCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             CBCSSSTTS---BCCEEETTTTE-EECHHHHHHSTTTTSCEEEC
T ss_pred             CcCCCCCCc---cccEEcCCCCe-eEcccccCCCcCCCCcEEeC
Confidence            468888632   36799999984 9999995 468999988764

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=94.68  E-value=0.011  Score=38.77  Aligned_cols=37  Identities=24%  Similarity=0.781  Sum_probs=29.8

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQI   62 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI   62 (207)
                      .|..|.    ..-.+||.+|.. .+|..|.. ..|++|+++-|
T Consensus        10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence            588885    247799999985 89999965 78999987754

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.39  E-value=0.028  Score=38.04  Aligned_cols=37  Identities=22%  Similarity=0.760  Sum_probs=30.1

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQI   62 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI   62 (207)
                      .|..|..    .-.+||.+|.. .+|..|.. ..|++|+++.|
T Consensus        16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence            5998863    47799999985 89999965 78999988765

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=93.26  E-value=0.019  Score=39.85  Aligned_cols=37  Identities=24%  Similarity=0.784  Sum_probs=29.7

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccCCCCCCCceEEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI   62 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   62 (207)
                      .|..|.    ..-++||.+|.. .+|..|....|++|+++-|
T Consensus        20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~l   56 (72)
T 2csv_A           20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVTV   56 (72)
T ss_dssp             BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEecH
Confidence            699884    247799999985 8999997688999877653

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=93.25  E-value=0.015  Score=41.30  Aligned_cols=38  Identities=34%  Similarity=0.871  Sum_probs=30.0

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQI   62 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI   62 (207)
                      .|..|...   .-++||.+|.. .+|..|.. ..|++|+++-|
T Consensus        20 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   58 (84)
T 2dja_A           20 TCLDHENE---KVNMYCVSDDQ-LICALCKLVGRHRDHQVASL   58 (84)
T ss_dssp             CCSSCSSS---CCCEEETTTTE-EECHHHHHTSTTTTCCBCCC
T ss_pred             cCcCcCCc---cccEEcCCCCc-eEcccCcCCCCCCCCCccCH
Confidence            59988532   37899999984 89999965 78999977654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.35  E-value=0.033  Score=40.38  Aligned_cols=37  Identities=38%  Similarity=0.898  Sum_probs=29.3

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ   61 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   61 (207)
                      .|..|...   .-++||.+|.. .+|..|.. ..|++|+++-
T Consensus        61 ~C~~H~~e---~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~   98 (101)
T 2jun_A           61 MCLEHEDE---KVNMYCVTDDQ-LICALCKLVGRHRDHQVAA   98 (101)
T ss_dssp             CCSSCSSS---CCCEEETTTTE-EECHHHHHHTTTSSSCBCC
T ss_pred             cCcCcCCC---cceEECCCCCC-ccchhcCCCCCcCCCCeec
Confidence            58888542   37899999984 89999965 7899998754

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.34  E-value=0.018  Score=38.86  Aligned_cols=36  Identities=31%  Similarity=0.789  Sum_probs=28.6

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQ   61 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   61 (207)
                      .|..|.    ....+||.+|.. .+|..|.. ..|++|+++.
T Consensus        20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred             cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence            499884    247799999984 89999964 5799998764

>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}

Probab=89.98  E-value=0.069  Score=35.26  Aligned_cols=26  Identities=35%  Similarity=0.867  Sum_probs=19.0

Q ss_pred             CCCcccccccccc-cCCC-----Ceeeeecce
Q 028592          108 KGVAHICEICGRS-LLDP-----FRFCSLGCK  133 (207)
Q Consensus       108 kg~~~~C~~C~R~-L~d~-----~rFCSl~CK  133 (207)
                      ++....||.|++. +...     -||||++|-
T Consensus         3 ~~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca   34 (43)
T 2w0t_A            3 GSEPAVCEMCGIVGTREAFFSKTKRFCSVSCS   34 (43)
T ss_dssp             SCCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred             CCceehhhhhcCcchhhhhccCCcceechhhh
Confidence            3446789999984 4443     489999994

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=81.66  E-value=0.82  Score=32.23  Aligned_cols=30  Identities=27%  Similarity=0.527  Sum_probs=24.3

Q ss_pred             CCCCCCCcccccccccccCC----------CCeeeeecce
Q 028592          104 PRSGKGVAHICEICGRSLLD----------PFRFCSLGCK  133 (207)
Q Consensus       104 ~r~~kg~~~~C~~C~R~L~d----------~~rFCSl~CK  133 (207)
                      .++.+....+|+.|.+.|+.          +-.|||..|-
T Consensus        13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL   52 (62)
T 2das_A           13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL   52 (62)
T ss_dssp             CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred             cCCCCccccChhhccchhhcCceeeeecCchhheechHHH
Confidence            55667788899999999973          3469999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.37
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	96.29
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	96.06
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.76
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.75
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	95.3
d1lv3a_	65	Hypothetical zinc finger protein YacG {Escherichia	84.76

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0005  Score=44.39  Aligned_cols=38  Identities=34%  Similarity=0.838  Sum_probs=29.2

Q ss_pred             hccccCCCCCCCCceecccCCCccccCccc-CCCCCCCceEEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCR-SSKHKDHQVIQI   62 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQI   62 (207)
                      .|..|.+.   .-++||.+|.. ++|..|. ...|++|.+.-|
T Consensus         3 ~C~~H~~e---~l~~yC~~c~~-~iC~~C~~~~~Hk~H~v~~l   41 (51)
T d2d8ua1           3 MCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   41 (51)
T ss_dssp             CCSSCTTC---CCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred             CCcccCcC---cceEEcCCCCc-eECccccCcCCcCcCcCcCH
Confidence            48888642   36899999985 9999994 468999876543

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.29  E-value=0.0013  Score=40.47  Aligned_cols=35  Identities=31%  Similarity=0.765  Sum_probs=28.3

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVI   60 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~Hrvl   60 (207)
                      .|+.|..    .-++||.+|.. .+|..|.. ..|++|.++
T Consensus         2 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            5888843    47899999985 99999965 479999875

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.00061  Score=45.15  Aligned_cols=37  Identities=24%  Similarity=0.788  Sum_probs=30.5

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccCCCCCCCceEEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRSSKHKDHQVIQI   62 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   62 (207)
                      .|..|..    .-.+||.+|.. .+|..|....|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~~-~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQT-CICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCCc-eECcccCcccCCCCCeeCH
Confidence            5999942    47799999985 9999997788999887754

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.00072  Score=45.64  Aligned_cols=39  Identities=36%  Similarity=0.867  Sum_probs=30.1

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceEEEE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVIQIR   63 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQIR   63 (207)
                      .|..|.+.   .-++||.+|. ..+|..|.. ..|++|.+.-|.
T Consensus        13 ~C~~H~~e---~l~~fC~~C~-~~iC~~C~~~~~Hk~H~~~~i~   52 (71)
T d2djaa1          13 TCLDHENE---KVNMYCVSDD-QLICALCKLVGRHRDHQVASLN   52 (71)
T ss_dssp             CCSSCSSS---CCCEEETTTT-EEECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcccCCc---cceeEcCCCC-ceeccccccCCCCCCCcCcCHH
Confidence            49988652   2689999998 499999954 579999877553

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.00083  Score=42.73  Aligned_cols=36  Identities=39%  Similarity=0.934  Sum_probs=28.2

Q ss_pred             hccccCCCCCCCCceecccCCCccccCccc-CCCCCCCceE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCR-SSKHKDHQVI   60 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~Hrvl   60 (207)
                      .|+.|.+.   +-++||.+|.. ++|..|. ...|++|.+.
T Consensus         7 ~C~~H~~e---~l~~yC~~C~~-~iC~~C~~~~~H~~H~~~   43 (47)
T d2dq5a1           7 MCLEHEDE---KVNMYCVTDDQ-LICALCKLVGRHRDHQVA   43 (47)
T ss_dssp             BCSSCTTS---BEEEEETTTTE-EEEHHHHHTSSTTSSCCC
T ss_pred             cchhhCCC---cceEEcCCCCc-cCCccCcCcCCcCCCeEe
Confidence            38888652   36899999984 9999995 4589999765

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.003  Score=38.96  Aligned_cols=35  Identities=26%  Similarity=0.824  Sum_probs=28.4

Q ss_pred             hccccCCCCCCCCceecccCCCccccCcccC-CCCCCCceE
Q 028592           21 VCRTHGDAARSECNMYCLDCNDQAFCFYCRS-SKHKDHQVI   60 (207)
Q Consensus        21 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~Hrvl   60 (207)
                      .|+.|..    ..++||.+|.. .+|..|.. ..|++|+++
T Consensus         3 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   38 (40)
T d2dida1           3 LCPQHHE----ALSLFCYEDQE-AVCLICAISHTHRAHTVV   38 (40)
T ss_dssp             BCTTTCC----BCCEEESSSCS-EECHHHHTSSTTTTSCEE
T ss_pred             cchhhCc----cceEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            5888843    47899999985 99999954 589999886

>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Hypothetical zinc finger protein YacG
domain: Hypothetical zinc finger protein YacG
species: Escherichia coli [TaxId: 562]

Probab=84.76  E-value=0.057  Score=36.65  Aligned_cols=30  Identities=37%  Similarity=1.010  Sum_probs=22.9

Q ss_pred             CcccccccccccC----CCCe-eeeecceeceeec
Q 028592          110 VAHICEICGRSLL----DPFR-FCSLGCKLAGIKR  139 (207)
Q Consensus       110 ~~~~C~~C~R~L~----d~~r-FCSl~CKv~~~~~  139 (207)
                      .+..|-+|++...    .+|+ |||-.||+..+.+
T Consensus         5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~   39 (65)
T d1lv3a_           5 ITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE   39 (65)
T ss_dssp             CEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred             ceeeCCCCCCccccCCCCCcCCchhHhhhhccHHH
Confidence            4567999999873    3565 9999999876654