Citrus Sinensis ID: 028595

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVRFE
Secondary Structure (PSIPRED)
ccccEEEEEEccccccccccccccccccccccccccccccccEEEEEEccEEEEEEcEEcccccccccccccccccccEEEEEEEcccccHHHHHHcccHHHHHHHcccccEEEEEEcccccccHHHHHHccccccccHHHHHHHHHHHcccEEEEccHHccccHHHHHHHHHHHHccccccccccccccccEEEEEEcccEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEcccccccEEEEEEEEEccccccccccccccccEEEEEEccEEEEEEEEcccccccccccHHHHcccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHHHcccHHHHHHHcccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHccHccccccccccccccEEEEEEEcccEEEEEc
Coil and Loop (DISEMBL)
MELLAKLACLFATQVTSFLLYVLSVSgrssiwdyiptvfdnfsanvvaegttvnlglwdtagqedynrlrplsyrgaDVFVLAFSLVSRASYENVLKKWIpelqhyspgvpvvlvgtkldlredkhyladhpglvpvttAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVvikppqkqkekkkkqrgcllnvfcgrnlvrfe
Flexible Loop (DISEMBL)
MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIpelqhyspgVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVvikppqkqkekkkkqrgcllnvfcgrnlvrfe
Low Complexity Region (SEG)
MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAikvvikppqkqkekkkkQRGCLLNVFCGRNLVRFE
Disordered region (IsUnstruct)
**LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI**************GCLLNVFCGRNLV***
Disordered Region (DISOPRED)
*ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY*********VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV*********************VFCGRNLVRFE
Disordered Region (DISEMBL)
MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP***********RGCLLNVFCGRNLVRFE
Disordered Region (DISPRO)
MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVRFE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVRFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q6Z808	214	Rac-like GTP-binding prot	yes	no	0.845	0.817	0.831	5e-84
O82481	215	Rac-like GTP-binding prot	yes	no	0.835	0.804	0.832	5e-81
Q9SU67	208	Rac-like GTP-binding prot	no	no	0.821	0.817	0.820	1e-80
Q67VP4	215	Rac-like GTP-binding prot	no	no	0.714	0.688	0.918	2e-78
O04369	197	Rac-like GTP-binding prot	N/A	no	0.777	0.817	0.807	1e-74
Q6Z7L8	197	Rac-like GTP-binding prot	no	no	0.787	0.827	0.760	2e-74
Q68Y52	214	Rac-like GTP-binding prot	no	no	0.830	0.803	0.709	2e-72
Q6EP31	197	Rac-like GTP-binding prot	no	no	0.787	0.827	0.791	2e-71
Q6ZHA3	197	Rac-like GTP-binding prot	no	no	0.700	0.736	0.841	2e-71
P92978	197	Rac-like GTP-binding prot	no	no	0.700	0.736	0.841	3e-71

>sp|Q6Z808|RAC3_ORYSJ Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1

 Score =  310 bits (794), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 148/178 (83%), Positives = 165/178 (92%), Gaps = 3/178 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANVV + TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 36  DYIPTVFDNFSANVVVDSTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           EN++KKWIPELQHY+PGVP+VLVGTKLDLREDKHYL DHPG++PVTTAQGEELRKQIGA+
Sbjct: 96  ENIMKKWIPELQHYAPGVPIVLVGTKLDLREDKHYLLDHPGMIPVTTAQGEELRKQIGAA 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKE--KKKKQRGC-LLNVFCGRNLVRFE 207
           YYIECSSKTQQNVK VFDAAIKVVI+PP KQ+E  KKK ++GC ++N+F GR +  F+
Sbjct: 156 YYIECSSKTQQNVKGVFDAAIKVVIQPPTKQREKKKKKSRQGCSMMNMFRGRKMSCFK 213

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82481|RAC10_ARATH Rac-like GTP-binding protein ARAC10 OS=Arabidopsis thaliana GN=ARAC10 PE=1 SV=1

 Score =  300 bits (767), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 149/179 (83%), Positives = 159/179 (88%), Gaps = 6/179 (3%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANVV EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL+FSLVSRASY
Sbjct: 36  DYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLSFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENV KKWIPELQH++PGVP+VLVGTKLDLREDKHYLADHPGL PVTTAQGEELRK IGA+
Sbjct: 96  ENVFKKWIPELQHFAPGVPLVLVGTKLDLREDKHYLADHPGLSPVTTAQGEELRKLIGAT 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKP------PQKQKEKKKKQRGCLLNVFCGRNLVR 205
           YYIECSSKTQQNVKAVFD+AIK VIKP        K+K+K+K   GCL NV CGR + R
Sbjct: 156 YYIECSSKTQQNVKAVFDSAIKEVIKPLVKQKEKTKKKKKQKSNHGCLSNVLCGRIVTR 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU67|RAC8_ARATH Rac-like GTP-binding protein ARAC8 OS=Arabidopsis thaliana GN=ARAC8 PE=1 SV=2

 Score =  298 bits (764), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/173 (82%), Positives = 159/173 (91%), Gaps = 3/173 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFS NVV EG TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL+SRASY
Sbjct: 36  DYIPTVFDNFSVNVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENV KKWIPELQH++PGVP+VLVGTK+DLRED+HYL+DHPGL PVTT+QGEELRK IGA+
Sbjct: 96  ENVFKKWIPELQHFAPGVPIVLVGTKMDLREDRHYLSDHPGLSPVTTSQGEELRKHIGAT 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPP---QKQKEKKKKQRGCLLNVFCGRN 202
           YYIECSSKTQQNVKAVFDAAIKVVIKP    +++K+K+K + GCL N+ CG+N
Sbjct: 156 YYIECSSKTQQNVKAVFDAAIKVVIKPAVKQKEKKKKQKPRSGCLSNILCGKN 208

Acts as a negative regulator of abscisic acid (ABA) responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67VP4|RAC4_ORYSJ Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1

 Score =  291 bits (746), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 136/148 (91%), Positives = 143/148 (96%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV +GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 36  DYVPTVFDNFSANVVVDGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENV+KKW+PELQHY+PGVP+VLVGTKLDLREDKHYL DHP LVPVTTAQGEELRK IGA+
Sbjct: 96  ENVMKKWLPELQHYAPGVPIVLVGTKLDLREDKHYLLDHPSLVPVTTAQGEELRKHIGAT 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPP 180
            YIECSSKTQQNVKAVFDAAIKVVIKPP
Sbjct: 156 CYIECSSKTQQNVKAVFDAAIKVVIKPP 183

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1

 Score =  278 bits (712), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 153/161 (95%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 34  DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           EN+ KKWIPEL+HY+PGVP++LVGTKLDLR+DKH+LADHPG VP+TTAQGEELRK IGA 
Sbjct: 94  ENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAP 153

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGC 193
            YIECSSKTQQNVKAVFDAAIKVV++PP+++K+K++ Q+ C
Sbjct: 154 AYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKREAQKSC 194

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Lotus japonicus (taxid: 34305)

>sp|Q6Z7L8|RAC7_ORYSJ Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1

 Score =  278 bits (711), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 124/163 (76%), Positives = 147/163 (90%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 34  DYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY 93

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           EN+ KKWIPEL+HY+P VP+VLVGTKLDLREDK +  DHPGL P++TAQGEEL++ IGA+
Sbjct: 94  ENIHKKWIPELRHYAPNVPIVLVGTKLDLREDKQFFLDHPGLAPISTAQGEELKRMIGAA 153

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLL 195
            YIECSSKTQQNVK+VFD+AIKVV+ PP+ +K+  +KQR C +
Sbjct: 154 AYIECSSKTQQNVKSVFDSAIKVVLCPPKPKKKNTRKQRSCWI 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q68Y52|RAC2_ORYSJ Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1

 Score =  271 bits (693), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/179 (70%), Positives = 149/179 (83%), Gaps = 7/179 (3%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANV  +G  VNLGLWDTAGQEDY+RLRPLSYRGAD+FVLAFSL+SRASY
Sbjct: 35  DYIPTVFDNFSANVSVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASY 94

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKW+PEL+ ++P VP+VLVGTKLDLR+ + YLADHP    +TTAQGEELRKQIGA+
Sbjct: 95  ENVLKKWMPELRRFAPNVPIVLVGTKLDLRDHRSYLADHPAASAITTAQGEELRKQIGAA 154

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKE------KKKKQRGCLL-NVFCGRNLV 204
            YIECSSKTQQN+KAVFD AIKVV++PP+++ E      K ++  GC L N+ CG   V
Sbjct: 155 AYIECSSKTQQNIKAVFDTAIKVVLQPPRRRGETTMARKKTRRSTGCSLKNLMCGSACV 213

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EP31|RAC5_ORYSJ Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2

 Score =  268 bits (685), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/163 (79%), Positives = 153/163 (93%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 34  DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY 93

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENV KKWIPEL+HY+PGVP++LVGTKLDLR+DK +  DHPG VP++TAQGEELRK IGA+
Sbjct: 94  ENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAA 153

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLL 195
            YIECSSKTQQN+KAVFDAAIKVV++PP+++K+KKK Q+GC +
Sbjct: 154 AYIECSSKTQQNIKAVFDAAIKVVLQPPKQKKKKKKAQKGCAI 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZHA3|RAC6_ORYSJ Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1

 Score =  268 bits (684), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 122/145 (84%), Positives = 135/145 (93%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 34  DYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY 93

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENV KKWIPEL+HY+PGVP++LVGTKLDLR+DK +  DHPG VP+TTAQGEELRKQIGA 
Sbjct: 94  ENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAP 153

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVI 177
           YYIECSSKTQ NVK VFDAAIKVV+
Sbjct: 154 YYIECSSKTQLNVKGVFDAAIKVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2

 Score =  268 bits (684), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 122/145 (84%), Positives = 136/145 (93%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV  G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 34  DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENV KKWIPEL+HY+PGVP+VLVGTKLDLR+DK +  DHPG VP+TTAQGEELRKQIGA 
Sbjct: 94  ENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAP 153

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVI 177
            YIECSSKTQ+NVKAVFDAAI+VV+
Sbjct: 154 TYIECSSKTQENVKAVFDAAIRVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224121658	211	predicted protein [Populus trichocarpa]	0.830	0.815	0.930	4e-91
224135767	211	predicted protein [Populus trichocarpa]	0.845	0.829	0.926	6e-91
388519237	211	unknown [Lotus japonicus]	0.835	0.819	0.896	3e-89
186477890	211	ROP small G protein [Medicago truncatula	0.835	0.819	0.885	2e-88
351734426	212	uncharacterized protein LOC100527158 [Gl	0.845	0.825	0.857	2e-86
449440696	210	PREDICTED: rac-like GTP-binding protein	0.835	0.823	0.930	6e-85
27527523	210	putative rac protein [Nicotiana tabacum]	0.830	0.819	0.924	4e-84
352740726	210	Rac/Rop GTPase 1 [Aquilaria microcarpa]	0.830	0.819	0.890	8e-84
345104383	211	small GTPase RacA [Gossypium schwendiman	0.830	0.815	0.895	4e-83
324984203	211	small GTPase [Gossypium raimondii]	0.830	0.815	0.895	4e-83

>gi|224121658|ref|XP_002318640.1| predicted protein [Populus trichocarpa] gi|222859313|gb|EEE96860.1| predicted protein [Populus trichocarpa]

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 161/173 (93%), Positives = 168/173 (97%), Gaps = 1/173 (0%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANVV EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 36  DYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKWIPELQHY+PG+P+VLVG KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA+
Sbjct: 96  ENVLKKWIPELQHYAPGIPIVLVGAKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAA 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKK-QRGCLLNVFCGRNLV 204
           YY+ECSSKTQQNVKAVFDAAIKVVIKP QKQKE+KKK +RGCLLNVFCGR LV
Sbjct: 156 YYVECSSKTQQNVKAVFDAAIKVVIKPAQKQKERKKKPRRGCLLNVFCGRRLV 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135767|ref|XP_002322155.1| predicted protein [Populus trichocarpa] gi|222869151|gb|EEF06282.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (868), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 163/176 (92%), Positives = 168/176 (95%), Gaps = 1/176 (0%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANV  EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 36  DYIPTVFDNFSANVAVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKWIPELQHY+PGVPVVLVGTKLDLREDKHYLADHPGLVPVT AQGEELRKQIGA+
Sbjct: 96  ENVLKKWIPELQHYAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTMAQGEELRKQIGAA 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKK-QRGCLLNVFCGRNLVRFE 207
           YYIECSSKTQQNVKAVFDAAIKVVIKP QKQKE+KKK +RGCLLNVFCGR L+  E
Sbjct: 156 YYIECSSKTQQNVKAVFDAAIKVVIKPAQKQKERKKKPRRGCLLNVFCGRRLLCLE 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519237|gb|AFK47680.1| unknown [Lotus japonicus]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 156/174 (89%), Positives = 167/174 (95%), Gaps = 1/174 (0%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANVV EG TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 36  DYIPTVFDNFSANVVMEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKWIPELQH++PGVPVVLVGTKLDLREDKHYLADHPGLVPVT+ QGEELRKQIGA+
Sbjct: 96  ENVLKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTSEQGEELRKQIGAT 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKK-QRGCLLNVFCGRNLVR 205
           YYIECSSKTQQNVK +FDAAI++VIKPPQKQ+EK+KK +RGC LNV CGRN+VR
Sbjct: 156 YYIECSSKTQQNVKGIFDAAIRMVIKPPQKQQEKRKKPRRGCFLNVLCGRNIVR 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186477890|gb|ACC85689.1| ROP small G protein [Medicago truncatula] gi|217071564|gb|ACJ84142.1| unknown [Medicago truncatula] gi|388511066|gb|AFK43599.1| unknown [Medicago truncatula]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 165/174 (94%), Gaps = 1/174 (0%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANVV EG TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 36  DYIPTVFDNFSANVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENV KKWIPELQH++PGVPVVLVGTKLDLRED+HYLADHPG+VPVTT QGEELRKQIGA+
Sbjct: 96  ENVFKKWIPELQHFAPGVPVVLVGTKLDLREDRHYLADHPGMVPVTTEQGEELRKQIGAT 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKK-QRGCLLNVFCGRNLVR 205
           YYIECSSKTQQNVK VFDAAI++VIKPPQKQ EK+KK +RGC LNV CGR++VR
Sbjct: 156 YYIECSSKTQQNVKGVFDAAIRMVIKPPQKQHEKRKKARRGCFLNVLCGRSIVR 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734426|ref|NP_001235733.1| uncharacterized protein LOC100527158 [Glycine max] gi|255631682|gb|ACU16208.1| unknown [Glycine max]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 164/176 (93%), Gaps = 1/176 (0%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANVV EG TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 37  DYIPTVFDNFSANVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 96

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKWIPELQH++PG+P+VLVGTK DLREDKHY+ADHP LVPVTT QGEELRK IGA+
Sbjct: 97  ENVLKKWIPELQHFAPGIPLVLVGTKSDLREDKHYMADHPSLVPVTTDQGEELRKHIGAT 156

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQ-RGCLLNVFCGRNLVRFE 207
           YYIECSSKTQQN+KAVFDAAI++VIKPPQKQ EK+KK+ RGC LNV C RN+VR +
Sbjct: 157 YYIECSSKTQQNMKAVFDAAIRMVIKPPQKQNEKRKKKPRGCFLNVLCRRNIVRLK 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440696|ref|XP_004138120.1| PREDICTED: rac-like GTP-binding protein 3-like [Cucumis sativus] gi|449526347|ref|XP_004170175.1| PREDICTED: rac-like GTP-binding protein 3-like [Cucumis sativus]

 Score =  319 bits (817), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 161/173 (93%), Positives = 167/173 (96%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANVV EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLVSRASY
Sbjct: 36  DYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKWIPELQHY+PGVPVVLVGTKLDLREDK YLADHPGLVPVTT QGEELRKQIGA+
Sbjct: 96  ENVLKKWIPELQHYAPGVPVVLVGTKLDLREDKFYLADHPGLVPVTTLQGEELRKQIGAT 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVR 205
           YY+ECSSKTQQNVK+VFDAAIKVVIKPPQKQKEKK+  RGCLLNVFCGRNL R
Sbjct: 156 YYVECSSKTQQNVKSVFDAAIKVVIKPPQKQKEKKRPHRGCLLNVFCGRNLTR 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27527523|emb|CAD42725.1| putative rac protein [Nicotiana tabacum]

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 159/172 (92%), Positives = 168/172 (97%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 36  DYVPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           EN+LKKWIPELQHY+PG+PVVL GTKLDLREDKH+LADHPGLVPVTTAQGEELRKQIGA+
Sbjct: 96  ENILKKWIPELQHYAPGIPVVLAGTKLDLREDKHFLADHPGLVPVTTAQGEELRKQIGAA 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLV 204
           YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKK++RGCL+NV CGR LV
Sbjct: 156 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKQRRGCLMNVMCGRKLV 207

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|352740726|gb|AEQ62558.1| Rac/Rop GTPase 1 [Aquilaria microcarpa]

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 154/173 (89%), Positives = 167/173 (96%), Gaps = 1/173 (0%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANV+ EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 36  DYVPTVFDNFSANVIVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKWIPELQHY+PGVPVVLVGTKLDLREDKHYLADHPG VPVTTAQGEELRKQIGA+
Sbjct: 96  ENVLKKWIPELQHYAPGVPVVLVGTKLDLREDKHYLADHPGSVPVTTAQGEELRKQIGAA 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVI-KPPQKQKEKKKKQRGCLLNVFCGRNLV 204
           YYIECSSKTQQNVKAVFDAAI+VVI  P +++++K+K+ RGCL+NVFCGRNLV
Sbjct: 156 YYIECSSKTQQNVKAVFDAAIRVVIKPPQKQKEKKQKQNRGCLINVFCGRNLV 208

Source: Aquilaria microcarpa

Species: Aquilaria microcarpa

Genus: Aquilaria

Family: Thymelaeaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345104383|gb|AEN71013.1| small GTPase RacA [Gossypium schwendimanii]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 155/173 (89%), Positives = 165/173 (95%), Gaps = 1/173 (0%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANVV EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 36  DYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKWIPELQHY+PGVPVVLVGTKLDLREDKHYLADHPGL+PV+TAQGEELRKQIGA+
Sbjct: 96  ENVLKKWIPELQHYAPGVPVVLVGTKLDLREDKHYLADHPGLLPVSTAQGEELRKQIGAA 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVI-KPPQKQKEKKKKQRGCLLNVFCGRNLV 204
           YYIECSSKTQQNVKAVFD AIKVVI  P +++++KKK  RGCL+NVFCGRN V
Sbjct: 156 YYIECSSKTQQNVKAVFDDAIKVVIKPPQKQKEKKKKPSRGCLINVFCGRNFV 208

Source: Gossypium schwendimanii

Species: Gossypium schwendimanii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324984203|gb|ADY68835.1| small GTPase [Gossypium raimondii]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 155/173 (89%), Positives = 165/173 (95%), Gaps = 1/173 (0%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANVV EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct: 36  DYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKWIPELQHY+PGVPVVLVGTKLDLREDKHYLADHPGL+PV+TAQGEELRKQIGA+
Sbjct: 96  ENVLKKWIPELQHYAPGVPVVLVGTKLDLREDKHYLADHPGLLPVSTAQGEELRKQIGAA 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVI-KPPQKQKEKKKKQRGCLLNVFCGRNLV 204
           YYIECSSKTQQNVKAVFD AIKVVI  P +++++KKK  RGCL+NVFCGRN V
Sbjct: 156 YYIECSSKTQQNVKAVFDDAIKVVIKPPQKQKEKKKKPSRGCLINVFCGRNFV 208

Source: Gossypium raimondii

Species: Gossypium raimondii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2170778	215	RAC10 "RAC-like 10" [Arabidops	0.835	0.804	0.776	1.1e-69
UNIPROTKB|Q6Z808	214	RAC3 "Rac-like GTP-binding pro	0.845	0.817	0.758	1.4e-69
TAIR|locus:2097905	208	ROP10 "RHO-related protein fro	0.821	0.817	0.768	2.4e-69
UNIPROTKB|Q6ZHA3	197	RAC6 "Rac-like GTP-binding pro	0.729	0.766	0.788	9.7e-64
TAIR|locus:2080878	197	ROP1 "RHO-related protein from	0.729	0.766	0.794	9.7e-64
TAIR|locus:2198566	195	ROP2 "RHO-related protein from	0.729	0.774	0.761	2.3e-62
TAIR|locus:2204380	196	ARAC5 "RAC-like GTP binding pr	0.729	0.770	0.768	3e-62
TAIR|locus:2827916	197	ARAC1 "Arabidopsis RAC-like 1"	0.729	0.766	0.774	3.8e-62
TAIR|locus:2131606	198	RAC3 "RAC-like 3" [Arabidopsis	0.729	0.762	0.754	6.2e-62
TAIR|locus:2161343	201	RAC2 "RAC-like 2" [Arabidopsis	0.729	0.751	0.754	2.1e-61

TAIR|locus:2170778 RAC10 "RAC-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 139/179 (77%), Positives = 148/179 (82%)

Query:    33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
             DYIPTVFDNFSANVV EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL+FSLVSRASY
Sbjct:    36 DYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLSFSLVSRASY 95

Query:    93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
             ENV KKWIPELQH++PGVP+VLVGTKLDLREDKHYLADHPGL PVTTAQGEELRK IGA+
Sbjct:    96 ENVFKKWIPELQHFAPGVPLVLVGTKLDLREDKHYLADHPGLSPVTTAQGEELRKLIGAT 155

Query:   153 YYIECSSKTQQNVKAVFDAAXXXXXXXXXXXXXXXXXQR------GCLLNVFCGRNLVR 205
             YYIECSSKTQQNVKAVFD+A                 ++      GCL NV CGR + R
Sbjct:   156 YYIECSSKTQQNVKAVFDSAIKEVIKPLVKQKEKTKKKKKQKSNHGCLSNVLCGRIVTR 214

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0007015 "actin filament organization" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0005525 "GTP binding" evidence=TAS

UNIPROTKB|Q6Z808 RAC3 "Rac-like GTP-binding protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 135/178 (75%), Positives = 150/178 (84%)

Query:    33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
             DYIPTVFDNFSANVV + TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY
Sbjct:    36 DYIPTVFDNFSANVVVDSTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 95

Query:    93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
             EN++KKWIPELQHY+PGVP+VLVGTKLDLREDKHYL DHPG++PVTTAQGEELRKQIGA+
Sbjct:    96 ENIMKKWIPELQHYAPGVPIVLVGTKLDLREDKHYLLDHPGMIPVTTAQGEELRKQIGAA 155

Query:   153 YYIECSSKTQQNVKAVFDAAXXXXXX--XXXXXXXXXXXQRGC-LLNVFCGRNLVRFE 207
             YYIECSSKTQQNVK VFDAA                   ++GC ++N+F GR +  F+
Sbjct:   156 YYIECSSKTQQNVKGVFDAAIKVVIQPPTKQREKKKKKSRQGCSMMNMFRGRKMSCFK 213

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2097905 ROP10 "RHO-related protein from plants 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 133/173 (76%), Positives = 145/173 (83%)

Query:    33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
             DYIPTVFDNFS NVV EG TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL+SRASY
Sbjct:    36 DYIPTVFDNFSVNVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASY 95

Query:    93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
             ENV KKWIPELQH++PGVP+VLVGTK+DLRED+HYL+DHPGL PVTT+QGEELRK IGA+
Sbjct:    96 ENVFKKWIPELQHFAPGVPIVLVGTKMDLREDRHYLSDHPGLSPVTTSQGEELRKHIGAT 155

Query:   153 YYIECSSKTQQNVKAVFDAAXXXXXXXXXXXXXXXXXQR---GCLLNVFCGRN 202
             YYIECSSKTQQNVKAVFDAA                 Q+   GCL N+ CG+N
Sbjct:   156 YYIECSSKTQQNVKAVFDAAIKVVIKPAVKQKEKKKKQKPRSGCLSNILCGKN 208

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=TAS

GO:0003924 "GTPase activity" evidence=ISS

GO:0007015 "actin filament organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

UNIPROTKB|Q6ZHA3 RAC6 "Rac-like GTP-binding protein 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 119/151 (78%), Positives = 135/151 (89%)

Query:    22 VLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81
             ++S +  +   DY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+
Sbjct:    23 LISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82

Query:    82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141
             LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDLR+DK +  DHPG VP+TTAQ
Sbjct:    83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQ 142

Query:   142 GEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
             GEELRKQIGA YYIECSSKTQ NVK VFDAA
Sbjct:   143 GEELRKQIGAPYYIECSSKTQLNVKGVFDAA 173

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080878 ROP1 "RHO-related protein from plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 120/151 (79%), Positives = 136/151 (90%)

Query:    22 VLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81
             ++S +  +   DY+PTVFDNFSANVV  G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+
Sbjct:    23 LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82

Query:    82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141
             LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDLR+DK +  DHPG VP+TTAQ
Sbjct:    83 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQ 142

Query:   142 GEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
             GEELRKQIGA  YIECSSKTQ+NVKAVFDAA
Sbjct:   143 GEELRKQIGAPTYIECSSKTQENVKAVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030833 "regulation of actin filament polymerization" evidence=IGI

GO:0030834 "regulation of actin filament depolymerization" evidence=IGI

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0003924 "GTPase activity" evidence=ISS

TAIR|locus:2198566 ROP2 "RHO-related protein from plants 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 115/151 (76%), Positives = 135/151 (89%)

Query:    22 VLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81
             ++S +  +   DY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+
Sbjct:    22 LISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 81

Query:    82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141
             LAFSL+S+ASYEN+ KKWIPEL+HY+PGVP++LVGTKLDLR+DK +  DHPG VP+TT Q
Sbjct:    82 LAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQ 141

Query:   142 GEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
             GEEL+K IG++ YIECSSKTQQNVKAVFDAA
Sbjct:   142 GEELKKLIGSAVYIECSSKTQQNVKAVFDAA 172

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2204380 ARAC5 "RAC-like GTP binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 116/151 (76%), Positives = 134/151 (88%)

Query:    22 VLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81
             ++S +  +   DY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+
Sbjct:    23 LISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82

Query:    82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141
             LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDLR+DK +  DHPG VP+TT Q
Sbjct:    83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQ 142

Query:   142 GEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
             GEEL+K IG+  YIECSSKTQQNVKAVFDAA
Sbjct:   143 GEELKKLIGSPIYIECSSKTQQNVKAVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2827916 ARAC1 "Arabidopsis RAC-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 117/151 (77%), Positives = 133/151 (88%)

Query:    22 VLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81
             ++S +  +   DY+PTVFDNFSANVV  G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+
Sbjct:    23 LISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82

Query:    82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141
             LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDLR+DK +  DHPG VP+TTAQ
Sbjct:    83 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQ 142

Query:   142 GEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
             GEEL+K IGA  YIECSSKTQ+NVK VFDAA
Sbjct:   143 GEELKKLIGAPAYIECSSKTQENVKGVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2131606 RAC3 "RAC-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 114/151 (75%), Positives = 136/151 (90%)

Query:    22 VLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81
             ++S +  +   DY+PTVFDNFSANV+ +G T+NLGLWDTAGQEDYNRLRPLSYRGADVF+
Sbjct:    23 LISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFL 82

Query:    82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141
             LAFSLVS+ASYENV KKW+PEL+HY+PGVP++LVGTKLDLR+DK + A+HPG VP++TAQ
Sbjct:    83 LAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQ 142

Query:   142 GEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
             GEEL+K IGA  YIECS+KTQQNVKAVFDAA
Sbjct:   143 GEELKKLIGAPAYIECSAKTQQNVKAVFDAA 173

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030427 "site of polarized growth" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2161343 RAC2 "RAC-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 114/151 (75%), Positives = 134/151 (88%)

Query:    22 VLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81
             ++S +  +   DY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+
Sbjct:    23 LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82

Query:    82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141
             LAFSL+S+ASYEN+ KKW+PEL+HY+PG+P+VLVGTKLDLR+DK +L DHPG   +TTAQ
Sbjct:    83 LAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQ 142

Query:   142 GEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
             GEELRK IGA  Y+ECSSKTQQNVKAVFD A
Sbjct:   143 GEELRKMIGAVRYLECSSKTQQNVKAVFDTA 173

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34145	RAC1B_DICDI	No assigned EC number	0.5575	0.7777	0.8298	yes	no
Q6RUV5	RAC1_RAT	No assigned EC number	0.5757	0.7681	0.8281	yes	no
Q67VP4	RAC4_ORYSJ	No assigned EC number	0.9189	0.7149	0.6883	no	no
P63000	RAC1_HUMAN	No assigned EC number	0.5757	0.7681	0.8281	yes	no
Q9SU67	RAC8_ARATH	No assigned EC number	0.8208	0.8212	0.8173	no	no
Q9HF56	CDC42_ASHGO	No assigned EC number	0.5031	0.7487	0.8115	yes	no
P40792	RAC1_DROME	No assigned EC number	0.5569	0.7536	0.8125	yes	no
P62998	RAC1_BOVIN	No assigned EC number	0.5757	0.7681	0.8281	yes	no
P62999	RAC1_CANFA	No assigned EC number	0.5757	0.7681	0.8281	yes	no
O82481	RAC10_ARATH	No assigned EC number	0.8324	0.8357	0.8046	yes	no
Q68Y52	RAC2_ORYSJ	No assigned EC number	0.7094	0.8309	0.8037	no	no
Q41253	RAC13_GOSHI	No assigned EC number	0.8068	0.7004	0.7397	N/A	no
Q41254	RAC9_GOSHI	No assigned EC number	0.8	0.7004	0.7397	N/A	no
O04369	RAC1_LOTJA	No assigned EC number	0.8074	0.7777	0.8172	N/A	no
Q40220	RAC2_LOTJA	No assigned EC number	0.8287	0.7053	0.7448	N/A	no
Q03206	RAC1_CAEEL	No assigned EC number	0.5477	0.7487	0.8115	yes	no
Q35638	RHO1_PEA	No assigned EC number	0.8206	0.7004	0.7360	N/A	no
Q6Z808	RAC3_ORYSJ	No assigned EC number	0.8314	0.8454	0.8177	yes	no
P63001	RAC1_MOUSE	No assigned EC number	0.5757	0.7681	0.8281	yes	no
Q39435	RAC1_BETVU	No assigned EC number	0.8482	0.7004	0.7360	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XII0273 hypothetical protein (211 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-106
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-84
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-79
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-68
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-68
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	5e-57
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	3e-56
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-54
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-53
pfam00071	162	pfam00071, Ras, Ras family	1e-51
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	8e-51
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-45
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	6e-45
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	4e-41
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	9e-35
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-34
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-31
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-30
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	8e-30
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	7e-28
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-27
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-26
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-23
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	2e-23
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-23
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	5e-23
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	5e-22
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	5e-21
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	5e-21
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-20
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-20
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-20
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-20
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-19
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-19
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	5e-19
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	5e-19
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	9e-19
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	3e-18
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-17
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-17
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-17
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-17
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-17
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-17
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	6e-17
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-16
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	4e-16
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-16
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	6e-16
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	8e-16
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-15
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	5e-15
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	7e-15
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	8e-15
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-14
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-14
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-13
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-13
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-13
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-13
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-13
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	8e-13
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	8e-13
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-12
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-12
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-12
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-11
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	5e-11
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	6e-11
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-10
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-10
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-10
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-10
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-10
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	6e-10
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	4e-09
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	5e-09
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-09
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	3e-08
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-08
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	8e-08
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-07
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	7e-07
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	6e-06
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	0.001
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	0.002

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  301 bits (772), Expect = e-106
 Identities = 126/145 (86%), Positives = 139/145 (95%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 29  DYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY 88

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKWIPEL+HY+PGVP+VLVGTKLDLR+DK + ADHPG VP+TTAQGEELRKQIGA+
Sbjct: 89  ENVLKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFFADHPGAVPITTAQGEELRKQIGAA 148

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVI 177
            YIECSSKTQQNVKAVFDAAIKVV+
Sbjct: 149 AYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  247 bits (633), Expect = 2e-84
 Identities = 83/149 (55%), Positives = 109/149 (73%), Gaps = 2/149 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVF+N+SA+V  +G  V LGLWDTAGQEDY+RLRPLSY   DVF++ FS+ S AS+
Sbjct: 26  DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASF 85

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW PE++H+ P VP++LVGTKLDLR DK  L +       PVT  QG+ L K+IG
Sbjct: 86  ENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIG 145

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKP 179
           A  Y+ECS+ TQ+ V+ VF+ AI+  +  
Sbjct: 146 AVKYLECSALTQEGVREVFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  234 bits (599), Expect = 2e-79
 Identities = 83/144 (57%), Positives = 109/144 (75%), Gaps = 1/144 (0%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN+SANV  +G  VNLGLWDTAGQE+Y+RLRPLSY   DVF+L FS+ S +S+
Sbjct: 28  EYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSF 87

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH-PGLVPVTTAQGEELRKQIGA 151
           ENV  KW PE++HY P VP++LVGTK+DLR+D + L        P+T  +GE+L K+IGA
Sbjct: 88  ENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGA 147

Query: 152 SYYIECSSKTQQNVKAVFDAAIKV 175
             Y+ECS+ TQ+ +K VFD AI+ 
Sbjct: 148 VKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  206 bits (527), Expect = 2e-68
 Identities = 87/146 (59%), Positives = 110/146 (75%), Gaps = 2/146 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 29  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 88

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 89  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 148

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVV 176
           A  Y+ECS+ TQ+ +K VFD AI+ V
Sbjct: 149 AVKYLECSALTQRGLKTVFDEAIRAV 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  206 bits (527), Expect = 4e-68
 Identities = 82/166 (49%), Positives = 111/166 (66%), Gaps = 3/166 (1%)

Query: 33  DYIPTVFDNFSANV-VAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +Y+PTVF+N+   + V  G  + L LWDTAGQEDY+RLRPLSY   DV ++ +S+ +  S
Sbjct: 31  EYVPTVFENYVTTLQVPNGKIIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTS 90

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQI 149
            +NV  KW PE+ H+ PG P+VLVG K DLR+DK+ ++     GL PVT  QGE + K I
Sbjct: 91  LDNVEDKWYPEVNHFCPGTPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSI 150

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLL 195
           GA  YIECS+K  +NV  VFDAAI V +    +   KKKK++ C++
Sbjct: 151 GAVAYIECSAKLMENVDEVFDAAINVALSKSGRAARKKKKKKKCVI 196

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  178 bits (452), Expect = 5e-57
 Identities = 80/157 (50%), Positives = 102/157 (64%), Gaps = 2/157 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SA    +G TV+L LWDTAGQE+Y+RLR LSY   +VF++ FS+ S +SY
Sbjct: 31  EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSY 90

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE+ H+ P VP++LVGTK DLR D   L      G  P+T  QG  L KQI 
Sbjct: 91  ENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKK 187
           A  Y+ECS+  Q  VK VF  A++ V+ P   +  K 
Sbjct: 151 AVKYLECSALNQDGVKEVFAEAVRAVLNPTPIKDTKS 187

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  175 bits (446), Expect = 3e-56
 Identities = 69/143 (48%), Positives = 103/143 (72%), Gaps = 2/143 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PT FDNFS  V+ +G  V L L DTAGQ+++++LRPL Y   DVF+L FS+V+ +S+
Sbjct: 28  EYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSF 87

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           +N+ +KWIPE++ ++P  P++LVGT+ DLR D + L      G  PV+ ++ + L ++IG
Sbjct: 88  QNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147

Query: 151 ASYYIECSSKTQQNVKAVFDAAI 173
           A  YIECS+ TQ+N+K VFD AI
Sbjct: 148 ACEYIECSALTQKNLKEVFDTAI 170

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  170 bits (432), Expect = 3e-54
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 2/143 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 29  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 88

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T   GE+L + + 
Sbjct: 89  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148

Query: 151 ASYYIECSSKTQQNVKAVFDAAI 173
           A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 149 AVKYVECSALTQKGLKNVFDEAI 171

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  168 bits (428), Expect = 2e-53
 Identities = 68/143 (47%), Positives = 99/143 (69%), Gaps = 2/143 (1%)

Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 30  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 89

Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H + +       PV   +G  + ++IGA
Sbjct: 90  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGA 149

Query: 152 SYYIECSSKTQQNVKAVFDAAIK 174
             Y+ECS+KT++ V+ VF+ A +
Sbjct: 150 FGYLECSAKTKEGVREVFEMATR 172

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  163 bits (416), Expect = 1e-51
 Identities = 60/148 (40%), Positives = 92/148 (62%), Gaps = 14/148 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +YIPT+  D ++  +  +G TV L +WDTAGQE +  LRPL YRGA  F+L + + SR S
Sbjct: 27  EYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDS 86

Query: 92  YENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +ENV KKW+ E+  ++   VP+VLVG K DL + +           V+T +GE L K++G
Sbjct: 87  FENV-KKWLEEILRHADENVPIVLVGNKCDLEDQR----------VVSTEEGEALAKELG 135

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              ++E S+KT +NV+  F+   + ++K
Sbjct: 136 L-PFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  161 bits (409), Expect = 8e-51
 Identities = 74/147 (50%), Positives = 109/147 (74%), Gaps = 2/147 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFD+++ +V   G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+V+ AS+
Sbjct: 28  EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASF 87

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           +NV ++W+PEL+ Y+P VP +L+GT++DLR+D   LA  +     P+T  QG++L K+IG
Sbjct: 88  QNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIG 147

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVI 177
           A  Y+ECS+ TQ+ +K VFD AI  ++
Sbjct: 148 ACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  148 bits (376), Expect = 2e-45
 Identities = 69/175 (39%), Positives = 102/175 (58%), Gaps = 4/175 (2%)

Query: 19  LLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 78
           LLYV ++       +Y PTVF+N+  +   +G  V L LWDTAGQE+Y RLRPLSY  A 
Sbjct: 17  LLYVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAH 74

Query: 79  VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 138
           V ++ F++ +  S ENV  KWI E++ Y P VPV+LVG K DLR++     ++     V 
Sbjct: 75  VILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEAVAKGNYATDEFVP 134

Query: 139 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGC 193
             Q + + + IGA  Y+ECS+ T + V  VF+AA +  +    ++  K++    C
Sbjct: 135 IQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALL--VRKSGKEEPGANC 187

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  146 bits (371), Expect = 6e-45
 Identities = 60/142 (42%), Positives = 91/142 (64%), Gaps = 3/142 (2%)

Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + +
Sbjct: 30  YVPTVFENYTASFEVDKQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 89

Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
           +VLKKW  E++ + P  PV+LVG K DLR D   L +  +   +PV+  QG  L KQIGA
Sbjct: 90  SVLKKWKGEVREFCPNTPVLLVGCKSDLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGA 149

Query: 152 SYYIECSSKTQQN-VKAVFDAA 172
           + Y+ECS+KT +N V+ VF+ A
Sbjct: 150 AAYVECSAKTSENSVRDVFEMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  137 bits (347), Expect = 4e-41
 Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 4/153 (2%)

Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y PTVF+N+  ++  +G  V L LWDTAGQE+++RLR LSY    V +L FS+ +  S E
Sbjct: 29  YEPTVFENYIHDIFVDGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLE 88

Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
           NV  KW+ E++H+ PGV +VLV  K DLRE ++          ++  +G  + K+I A  
Sbjct: 89  NVESKWLAEIRHHCPGVKLVLVALKCDLREPRNERDRGTHT--ISYEEGLAVAKRINACR 146

Query: 154 YIECSSKTQQNVKAVFD--AAIKVVIKPPQKQK 184
           Y+ECS+K  + V   F   A + +  +PP    
Sbjct: 147 YLECSAKLNRGVNEAFTEAARVALNARPPHPHS 179

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  120 bits (303), Expect = 9e-35
 Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 14/144 (9%)

Query: 33  DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +Y  T+  +F S  +  +G  V L +WDTAGQE +  +    YRGA   +L + + +R S
Sbjct: 28  NYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRES 87

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +EN+  KW+ EL+ Y  P +P++LVG K DL +++           V+T + ++  K+ G
Sbjct: 88  FENL-DKWLNELKEYAPPNIPIILVGNKSDLEDERQ----------VSTEEAQQFAKENG 136

Query: 151 ASYYIECSSKTQQNVKAVFDAAIK 174
             ++ E S+KT +NV   F++  +
Sbjct: 137 LLFF-ETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  120 bits (301), Expect = 7e-34
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 3/163 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
            Y+PTVF+N++A+   +   + L +WDT+G   Y+ +RPL+Y  +D  ++ F +    + 
Sbjct: 29  SYVPTVFENYTASFEIDKHRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETL 88

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ++VLKKW  E Q + P   +VLVG KLD+R D   L +     L+PVT  QG  L +Q+G
Sbjct: 89  DSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLSTLRELSKQRLIPVTHEQGSLLARQLG 148

Query: 151 ASYYIECSSKTQQN-VKAVFDAAIKVVIKPPQKQKEKKKKQRG 192
           A  Y+ECSS+  +N V+ VF       ++      ++   +RG
Sbjct: 149 AVAYVECSSRMSENSVRDVFHVTTLASVRREHPSLKRSTSRRG 191

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  112 bits (282), Expect = 2e-31
 Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 3/143 (2%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + 
Sbjct: 33  NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 92

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG--LVPVTTAQGEELRKQIG 150
           ++VLKKW  E+Q + P   ++LVG K DLR D   L +       PV+  QG  + KQIG
Sbjct: 93  DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 152

Query: 151 ASYYIECSSKTQQN-VKAVFDAA 172
           A+ YIECS+   +N V+ +F  A
Sbjct: 153 AATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score =  112 bits (280), Expect = 1e-30
 Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N++A +  E   V L LWDT+G   Y+ +RPL Y  +D  +L F +     ++
Sbjct: 42  YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFD 101

Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
           + LKKW  E+  Y P   ++L+G K DLR D   L +  +    P++  QG  + KQ+GA
Sbjct: 102 SALKKWRAEILDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGA 161

Query: 152 SYYIECSSKT-QQNVKAVFDAAIKVVIKPPQKQKEKKKKQR 191
             Y+ECS+ T ++++ ++F  A  + I       +K   + 
Sbjct: 162 EAYLECSAFTSEKSIHSIFRTASLLCINKLSPLAKKSPVRS 202

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  107 bits (271), Expect = 8e-30
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 14/148 (9%)

Query: 33  DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            Y  T+  +F    +  +G  V L +WDTAGQE +  +    YRGA   +L + + +R S
Sbjct: 28  QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES 87

Query: 92  YENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +EN+ + W+ EL+ Y+ P V ++LVG K DL E +           V+  + E   ++ G
Sbjct: 88  FENL-ENWLKELREYASPNVVIMLVGNKSDLEEQRQ----------VSREEAEAFAEEHG 136

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              + E S+KT  NV+  F+   + ++K
Sbjct: 137 LP-FFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  102 bits (257), Expect = 7e-28
 Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 20/149 (13%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   +V +G T  L + DTAGQE+++ +R    R  D F+L +S+ SR 
Sbjct: 25  VEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRE 84

Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDL---REDKHYLADHPGLVPVTTAQGEEL 145
           S+E +  +++ I  +      VP+VLVG K DL   R+             V+T +GE L
Sbjct: 85  SFEEIKNIREQILRV-KDKEDVPIVLVGNKCDLENERQ-------------VSTEEGEAL 130

Query: 146 RKQIGASYYIECSSKTQQNVKAVFDAAIK 174
            ++ G   ++E S+KT  N+  +F+  ++
Sbjct: 131 AEEWGCP-FLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  103 bits (258), Expect = 2e-27
 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 33  DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            Y PT+ +   A  +      + L LWDTAGQE+Y  LRP  YRGA+  ++ +    R S
Sbjct: 33  GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES 92

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED----KHYLADHPGLVPVTTAQGEELR 146
            + + ++W+ EL+      VP++LVG K+DL ++    +  L      V +     + + 
Sbjct: 93  SDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL 152

Query: 147 KQIGASYYIECSSK--TQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 196
            ++     +E S+K  T  NV  +F   ++ +++  +K   K + ++   LN
Sbjct: 153 PEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKLVLKNELRQLDRLN 204

Length = 219

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 99.2 bits (248), Expect = 2e-26
 Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 13/137 (9%)

Query: 42  FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP 101
           F   V   G  ++L +WDTAGQE Y+ L P+ YR AD  +L + +    S++ V KKWI 
Sbjct: 38  FQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIK 96

Query: 102 ELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160
           EL+      + +V+VG K+DL   +           V+ ++ EE  K +GA ++ E S+K
Sbjct: 97  ELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGAKHF-ETSAK 145

Query: 161 TQQNVKAVFDAAIKVVI 177
           T + ++ +F +  K +I
Sbjct: 146 TGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 91.1 bits (227), Expect = 2e-23
 Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 14/148 (9%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY PT+ D++   +  +G    L + DTAGQE+++ +R    R  + F+L +S+  R S+
Sbjct: 28  DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSF 87

Query: 93  E--NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           E     ++ I  ++     VP+VLVG K DL  ++           V+T +G+EL +Q G
Sbjct: 88  EEIKKFREQILRVKDRD-DVPIVLVGNKCDLESERV----------VSTEEGKELARQWG 136

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              ++E S+K + NV   F   ++ + K
Sbjct: 137 CP-FLETSAKERVNVDEAFYDLVREIRK 163

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 92.0 bits (228), Expect = 2e-23
 Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 16/181 (8%)

Query: 6   KLACLFATQVTSFLLYVLSVSGRSSIW---DYIPTVFDNFSANVVAEGTTVNLGLWDTAG 62
           +L C  A   T    Y L  +   ++W    Y         +  V +G +V+L LWDT G
Sbjct: 17  RLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFG 75

Query: 63  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122
             D+++ R  +Y  +DV +L FS+ S  S  NV   W PE++H+ P VPV+LVG KLDLR
Sbjct: 76  --DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133

Query: 123 E---DKHYLADHPGLVPVTTA------QGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 173
               D+   A  P   P+  A       G  + K++G  YY E S  TQ  VK VFD AI
Sbjct: 134 YADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY-ETSVVTQFGVKDVFDNAI 192

Query: 174 K 174
           +
Sbjct: 193 R 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 91.1 bits (227), Expect = 2e-23
 Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 13/131 (9%)

Query: 42  FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP 101
            +  V  + TTV   +WDTAGQE Y  L P+ YRGA   ++ + + S  S+E   K W+ 
Sbjct: 39  LTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVK 97

Query: 102 ELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160
           ELQ H  P + + L G K DL   +           V+T + +E   + G   ++E S+K
Sbjct: 98  ELQEHGPPNIVIALAGNKADLESKRQ----------VSTEEAQEYADENGL-LFMETSAK 146

Query: 161 TQQNVKAVFDA 171
           T +NV  +F  
Sbjct: 147 TGENVNELFTE 157

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 90.3 bits (225), Expect = 5e-23
 Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 14/149 (9%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y PT+ D++   +  +G    L + DTAGQE+++ +R    R  + F+L +S+  R S+
Sbjct: 30  EYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSF 89

Query: 93  ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           E +   ++ I  ++     VP+VLVG K DL  ++           V+T +G+EL +Q G
Sbjct: 90  EEIAKFREQILRVKDRDD-VPIVLVGNKCDLENERV----------VSTEEGKELARQWG 138

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKP 179
              ++E S+K + NV   F   ++ + K 
Sbjct: 139 CP-FLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 88.4 bits (219), Expect = 5e-22
 Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 17/170 (10%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           I +Y PT+ D++    V +  T  L + DTAGQE+Y+ +R    R    F+  +S+ SR+
Sbjct: 31  IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS 90

Query: 91  SYE--NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E     ++ I  ++     VP++LVG K DL  ++           V+T +G+EL K 
Sbjct: 91  SFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKS 139

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVV---IKPPQKQKEKKKKQRGCLL 195
            G   ++E S+K + NV   F   ++ +   +K     +++KKK   CL+
Sbjct: 140 FGIP-FLETSAKQRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLI 188

Length = 189

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 85.0 bits (211), Expect = 5e-21
 Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 16/140 (11%)

Query: 34  YIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY-RGADVFVLAFSLVSRAS 91
           Y  T+  D  S  +  +  TV L LWDTAGQE +  L P SY R + V V+ + + +R S
Sbjct: 29  YQATIGIDFLSKTMYVDDKTVRLQLWDTAGQERFRSLIP-SYIRDSSVAVVVYDITNRQS 87

Query: 92  YENVLKKWIPELQH-YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           ++N   KWI +++      V +VLVG K DL + +           V+T +GE+  K+  
Sbjct: 88  FDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKENN 136

Query: 151 ASYYIECSSKTQQNVKAVFD 170
           A  +IE S+K   NVK +F 
Sbjct: 137 A-MFIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 85.1 bits (211), Expect = 5e-21
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 14/139 (10%)

Query: 33  DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            YI T+  +F    +  +G TV L +WDTAGQE +  +    YRGA   ++ + +  + S
Sbjct: 30  SYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES 89

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           + NV K+W+ E+  Y S  V  +LVG K DL + K           V   + +E   ++G
Sbjct: 90  FNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKK----------VVDYTEAKEFADELG 138

Query: 151 ASYYIECSSKTQQNVKAVF 169
              ++E S+K   NV+  F
Sbjct: 139 IP-FLETSAKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 84.0 bits (208), Expect = 1e-20
 Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 15/144 (10%)

Query: 30  SIWDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS 88
           SI +Y P    N+   V+ E G T    L DTAGQEDY+ +R L YR  +  +  F +V 
Sbjct: 27  SITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVI 86

Query: 89  RA-SYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
                E +L+K   E+ H++  GVP++LVG K+DLR+ K           + T       
Sbjct: 87  LVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLRDAK-----------LKTHVAFLFA 135

Query: 147 KQIGASYYIECSSKTQQNVKAVFD 170
           K  G    I  S++T +N+ + F 
Sbjct: 136 KLNGEP-IIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 83.6 bits (207), Expect = 2e-20
 Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 15/139 (10%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ SR S+
Sbjct: 29  EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSF 88

Query: 93  ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           E++   ++ I  ++  S  VP+VLVG K DL               V+T QG++L K  G
Sbjct: 89  EDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAART-----------VSTRQGQDLAKSYG 136

Query: 151 ASYYIECSSKTQQNVKAVF 169
              YIE S+KT+Q V+  F
Sbjct: 137 IP-YIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 83.1 bits (206), Expect = 2e-20
 Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 15/128 (11%)

Query: 45  NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
            V  +G  V L +WDTAGQE +  L    YRGA   +L + +  R +++N L  W+ EL 
Sbjct: 41  TVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDN-LDTWLNELD 99

Query: 105 HYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162
            YS  P    +LVG K+D                VT  +G++  ++     +IE S+KT+
Sbjct: 100 TYSTNPDAVKMLVGNKIDKEN-----------REVTREEGQKFARKHNM-LFIETSAKTR 147

Query: 163 QNVKAVFD 170
             V+  F+
Sbjct: 148 IGVQQAFE 155

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 82.7 bits (205), Expect = 4e-20
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 20/141 (14%)

Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLS---YRGADVFVLAFSLVSR 89
           +I T+  +F    +  +G  + L +WDTAGQE   R R ++   YRGA   +L + +   
Sbjct: 32  FISTIGIDFKIRTIELDGKKIKLQIWDTAGQE---RFRTITTSYYRGAMGIILVYDITDE 88

Query: 90  ASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
            S+EN+ K W+  + +H S  V  +LVG K D+ E +           V+  +GE L ++
Sbjct: 89  KSFENI-KNWMRNIDEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALARE 137

Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G  +  E S+K   NV+  F
Sbjct: 138 YGIKFL-ETSAKANINVEEAF 157

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 82.2 bits (203), Expect = 1e-19
 Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 25  VSGRSSIWDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83
           V  R  +  Y  T+   F A  +V     V LG+WDTAG E Y  +  + YRGA   ++ 
Sbjct: 21  VHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80

Query: 84  FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 143
           + L   +S+E   K W+ ELQ+      + L GTK DL E          L  V     +
Sbjct: 81  YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQ 133

Query: 144 ELRKQIGASYYIECSSKTQQNVKAVF 169
           +   +I A ++ E SSKT QNV  +F
Sbjct: 134 DFADEIKAQHF-ETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 81.5 bits (202), Expect = 1e-19
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 20/161 (12%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
            Y PT+ + FS  +  +G   +L + DTAGQ++Y+ L      G   ++L +S+ SR S+
Sbjct: 29  SYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSF 88

Query: 93  ENVLKKWIPELQHYSPG---VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           E V  K I +      G   VP+VLVG K DL  ++           V+  +G++L +  
Sbjct: 89  EVV--KVIYDKILDMLGKESVPIVLVGNKSDLHMERQ----------VSAEEGKKLAESW 136

Query: 150 GASYYIECSSKTQQNVKAVFDAAI----KVVIKPPQKQKEK 186
           GA+ ++E S+K  +NV+  F+  I    KV    P  QK K
Sbjct: 137 GAA-FLESSAKENENVEEAFELLIEEIEKVENPLPPGQKSK 176

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 80.3 bits (198), Expect = 5e-19
 Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 28/176 (15%)

Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y PT+ D++   VV +G    L + DTAGQE+Y  LR    R  + F+L +S+ SR+++E
Sbjct: 28  YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFE 87

Query: 94  NVLKKWIPELQ----HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
            V +++  ++Q      +  VP+++VG K D   ++           V+T +G  L +++
Sbjct: 88  RV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRL 136

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ----------KEKKKKQRGCLL 195
           G   +IE S+KT  NV+  F   ++ + +  Q+Q          K+K+KK+R C++
Sbjct: 137 G-CEFIEASAKTNVNVERAFYTLVRALRQ--QRQGGQGPKGGPTKKKEKKKRKCVI 189

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 79.8 bits (197), Expect = 5e-19
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 12/121 (9%)

Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG 109
              V L LWDTAGQE+++ +    YRGA   +L FS   R S+E + + W  +++     
Sbjct: 48  DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGD 106

Query: 110 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
           +P+VLV TK+DL +             +T  + E L K++    +   S K   NV  +F
Sbjct: 107 IPMVLVQTKIDLLDQ----------AVITNEEAEALAKRLQLPLF-RTSVKDDFNVTELF 155

Query: 170 D 170
           +
Sbjct: 156 E 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 79.2 bits (196), Expect = 9e-19
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 20/153 (13%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLSYRGADVFVLAFSL 86
           I +Y P +   +S  V  +G  V+L + DT GQ+      +  R L  R AD FVL +S+
Sbjct: 25  IGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQNEDPESLERSL--RWADGFVLVYSI 82

Query: 87  VSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 144
             R+S++ V  L + I E++     +PV+LVG K DL   +           V+T +G++
Sbjct: 83  TDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADLLHSRQ----------VSTEEGQK 132

Query: 145 LRKQIGASYYIECS-SKTQQNVKAVFDAAIKVV 176
           L  ++G  ++ E S ++    V+ VF    + V
Sbjct: 133 LALELGCLFF-EVSAAENYLEVQNVFHELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 78.6 bits (194), Expect = 3e-18
 Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 16/138 (11%)

Query: 36  PTVFDNFSANVV--AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           PTV  +F + ++    G  + L LWDTAGQE +  +    YR +   +L F + +R S+E
Sbjct: 33  PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFE 92

Query: 94  NVLKKWIPELQ-HYSPGVPV-VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           +V   W+ E + H  P  PV +LVG K DL   +           VT  + E+L K +G 
Sbjct: 93  HV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM 141

Query: 152 SYYIECSSKTQQNVKAVF 169
             YIE S++T  NV+  F
Sbjct: 142 K-YIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 76.5 bits (189), Expect = 1e-17
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 16/144 (11%)

Query: 40  DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
           D  +  V  +   V L +WDTAGQE +  L    YRGAD  VL + + +  S+E+ L  W
Sbjct: 36  DFLTKEVTVDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFES-LDSW 94

Query: 100 IPE-LQHYSP----GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154
             E L   SP      P V++G K+DL E+K           V+T + ++  K  G   Y
Sbjct: 95  RDEFLIQASPRDPENFPFVVLGNKIDL-EEKR---------QVSTKKAQQWCKSKGNIPY 144

Query: 155 IECSSKTQQNVKAVFDAAIKVVIK 178
            E S+K   NV   F+   ++ ++
Sbjct: 145 FETSAKEAINVDQAFETIARLALE 168

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 76.3 bits (188), Expect = 1e-17
 Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 12/138 (8%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY PT  D++   VV +G  V L + DTAGQEDY  +R   +R  + F+L FS+    S+
Sbjct: 28  DYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESF 87

Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
             + +     L+      VP++LVG K DL + +           V+  +   L +Q G 
Sbjct: 88  TALAEFREQILRVKEDDNVPLLLVGNKCDLEDKRQ----------VSVEEAANLAEQWGV 137

Query: 152 SYYIECSSKTQQNVKAVF 169
           + Y+E S+KT+ NV  VF
Sbjct: 138 N-YVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 77.0 bits (189), Expect = 1e-17
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 29  SSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 87
           SS+ D  PT+  +F    +   G  + L +WDTAGQE +  L    YR A   +L + + 
Sbjct: 37  SSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVT 96

Query: 88  SRASYENVLKKWIPELQHYSPGVPVV--LVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145
            R ++ N+   W  E++ YS     V  LVG K+D   ++           V+  +G  L
Sbjct: 97  RRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESER----------DVSREEGMAL 146

Query: 146 RKQIGASYYIECSSKTQQNVKAVFDA-AIKVVIKP 179
            K+ G   ++ECS+KT++NV+  F+  A+K++  P
Sbjct: 147 AKEHGCL-FLECSAKTRENVEQCFEELALKIMEVP 180

Length = 211

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 12/125 (9%)

Query: 46  VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH 105
           +  +G  V L +WDTAGQE +  +    YR A+  ++A+ +  R+S+E+V   WI E++ 
Sbjct: 45  LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEK 103

Query: 106 Y-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 164
           Y +  V ++L+G K DL E +           V   +   L +  G    +E S+K   N
Sbjct: 104 YGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEHYGILAVLETSAKESSN 153

Query: 165 VKAVF 169
           V+  F
Sbjct: 154 VEEAF 158

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 75.1 bits (185), Expect = 3e-17
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 14/146 (9%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY PT+ D+++     +G    L + DTAGQE+++ +R    R  + F+L FS+  R S+
Sbjct: 30  DYDPTIEDSYTKQCEIDGQWARLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSF 89

Query: 93  ENVLK--KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           E V K    I  ++      P++LVG K DL   +           V+  +G+EL +Q+ 
Sbjct: 90  EEVDKFHTQILRVKDRDE-FPMILVGNKADLEHQRQ----------VSREEGQELARQLK 138

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVV 176
              YIE S+K + NV   F   ++V+
Sbjct: 139 IP-YIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 74.8 bits (184), Expect = 4e-17
 Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 22/166 (13%)

Query: 16  TSFLLYVL--SVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP-- 71
           +S L  +L   V   S +     T  D        +   V L L DT G +++  L    
Sbjct: 11  SSLLNALLGGEVGEVSDV--PGTTR-DPDVYVKELDKGKVKLVLVDTPGLDEFGGLGREE 67

Query: 72  ---LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 128
              L  RGAD+ +L      R S E+     +  L     G+P++LVG K+DL E++   
Sbjct: 68  LARLLLRGADLILLVVDSTDRESEEDAKLLILRRL--RKEGIPIILVGNKIDLLEER--- 122

Query: 129 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 174
                   V      E   +I      E S+KT + V  +F+  I+
Sbjct: 123 -------EVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 74.2 bits (182), Expect = 6e-17
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 17/163 (10%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSY 74
           TSFL      S  S+   ++ TV  +F    V      + L +WDTAGQE Y  +    Y
Sbjct: 15  TSFLFRYADDSFTSA---FVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQERYRTITTAYY 71

Query: 75  RGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPG 133
           RGA  F+L + + +  S+ N ++ W  +++ YS     V+LVG K D+ +++        
Sbjct: 72  RGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER-------- 122

Query: 134 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 176
              V+  +G +L  Q+G  ++ E S+K   NVK VF+  + ++
Sbjct: 123 --VVSAERGRQLADQLGFEFF-EASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 72.6 bits (178), Expect = 3e-16
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 17/137 (12%)

Query: 45  NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
           ++  +G  V L +WDTAGQE +  LR   YRG+D  +L FS+    S++N L  W  E  
Sbjct: 46  DLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFI 104

Query: 105 HYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159
           +Y+        P V++G K+D+ E +           V+T + +   +  G   Y E S+
Sbjct: 105 YYADVKEPESFPFVILGNKIDIPERQ-----------VSTEEAQAWCRDNGDYPYFETSA 153

Query: 160 KTQQNVKAVFDAAIKVV 176
           K   NV A F+ A++ V
Sbjct: 154 KDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 72.2 bits (178), Expect = 4e-16
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 13/126 (10%)

Query: 45  NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
            +  +G T+   +WDTAGQE Y  +    YRGA   +L + +  ++++ENV ++W+ EL+
Sbjct: 44  TIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELR 102

Query: 105 HYSPG-VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
            ++   + ++LVG K DLR  +           V T + +   ++ G S +IE S+    
Sbjct: 103 DHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGLS-FIETSALDGT 151

Query: 164 NVKAVF 169
           NV+  F
Sbjct: 152 NVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 72.1 bits (177), Expect = 4e-16
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 14/137 (10%)

Query: 42  FSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWI 100
           F + VV   G +V L +WDTAGQE +  +    YRGA   +L + + SR S+ N L  W+
Sbjct: 37  FGSRVVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESF-NALTNWL 95

Query: 101 PELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159
            + +   SP + ++LVG K DL +D+           VT  +     ++ G   ++E S+
Sbjct: 96  TDARTLASPDIVIILVGNKKDLEDDRE----------VTFLEASRFAQENGL-LFLETSA 144

Query: 160 KTQQNVKAVFDAAIKVV 176
            T +NV+  F    + +
Sbjct: 145 LTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 71.4 bits (175), Expect = 6e-16
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 15/137 (10%)

Query: 42  FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP 101
           +  N   EG T+ +  WDTAGQE +  +    Y  A   +L F +  + +Y+N L KW  
Sbjct: 38  YKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKN-LSKWYE 96

Query: 102 ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161
           EL+ Y P +P ++V  K+DL              P  T +     ++     Y   S+  
Sbjct: 97  ELREYRPEIPCIVVANKIDLD-------------PSVTQKKFNFAEKHNLPLYY-VSAAD 142

Query: 162 QQNVKAVFDAAIKVVIK 178
             NV  +F  AIK+ + 
Sbjct: 143 GTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 71.8 bits (176), Expect = 8e-16
 Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 14/128 (10%)

Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH--YSPGV 110
           V+L LWDTAGQE +  L    +R A  F+L F L S  S+ NV + W+ +LQ   Y    
Sbjct: 63  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENP 121

Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
            +VL+G K DL + +           V+  Q  EL  + G   Y E S+ T QNV+   +
Sbjct: 122 DIVLIGNKADLPDQRE----------VSERQARELADKYGIP-YFETSAATGQNVEKAVE 170

Query: 171 AAIKVVIK 178
             + +++K
Sbjct: 171 TLLDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 13/146 (8%)

Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y PT+ D++   V  +G   +L + DTAG E +  +R L  +    F+L +S+ S AS  
Sbjct: 30  YDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLN 89

Query: 94  NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            +  L++ +  ++  S  VP+VLVG K DL +D+           V+   G  L +Q G 
Sbjct: 90  ELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGN 138

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVI 177
             + E S++ + NV  VF   ++ +I
Sbjct: 139 VPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 69.1 bits (169), Expect = 5e-15
 Identities = 40/147 (27%), Positives = 78/147 (53%), Gaps = 14/147 (9%)

Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y PT+ D++   V  +G    L + DTAG E +  +R L  +    FVL +S+ +++++ 
Sbjct: 30  YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFN 89

Query: 94  NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           ++  L++ I  ++  +  VP++LVG K DL +++           V   QG+ L +Q G 
Sbjct: 90  DLQDLREQILRVKD-TEDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWGC 138

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVIK 178
             ++E S+K + NV  +F   ++ + +
Sbjct: 139 -AFLETSAKAKINVNEIFYDLVRQINR 164

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 69.0 bits (169), Expect = 7e-15
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 14/139 (10%)

Query: 42  FSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWI 100
           F A ++  +G  + L +WDTAGQE +  +    YRGA   +L + +  R ++ + L  W+
Sbjct: 41  FGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LTSWL 99

Query: 101 PEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159
            +  QH +  + ++L+G K DL   +           V+  +GE   ++ G   ++E S+
Sbjct: 100 EDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAREHGL-IFMETSA 148

Query: 160 KTQQNVKAVFDAAIKVVIK 178
           KT  NV+  F    K +  
Sbjct: 149 KTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 68.7 bits (168), Expect = 8e-15
 Identities = 42/157 (26%), Positives = 84/157 (53%), Gaps = 15/157 (9%)

Query: 20  LYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 79
           L V  VSG + I  Y PT+ D +   +  + +   L + DTAG E +  +R L  +    
Sbjct: 17  LTVQFVSG-TFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG 75

Query: 80  FVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 137
           F++ +SLV++ +++++  ++  I  ++ Y   VP++LVG K+DL  ++           V
Sbjct: 76  FIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK-VPIILVGNKVDLESERE----------V 124

Query: 138 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 174
           ++A+G  L ++ G   ++E S+K++  V  +F   ++
Sbjct: 125 SSAEGRALAEEWGCP-FMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 69.2 bits (169), Expect = 1e-14
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 17/151 (11%)

Query: 37  TVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV 95
           T+   F A ++  +   + L +WDTAGQE +  +    YRGA   +L + +  R ++ N 
Sbjct: 38  TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NH 96

Query: 96  LKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154
           L  W+ +  QH +  + ++L+G K DL    H  A       V+T +GE+  K+ G   +
Sbjct: 97  LASWLEDARQHANANMTIMLIGNKCDL---AHRRA-------VSTEEGEQFAKEHGL-IF 145

Query: 155 IECSSKTQQNVKAVFDAAIKVVIKPPQKQKE 185
           +E S+KT QNV+   +A IK   K  +K ++
Sbjct: 146 MEASAKTAQNVE---EAFIKTAAKIYKKIQD 173

Length = 210

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 68.9 bits (168), Expect = 1e-14
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 12/121 (9%)

Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
           G  + L +WDTAGQE +N +    YR A   +L + +  + ++++ L KW+  +  Y S 
Sbjct: 46  GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASE 104

Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
              ++LVG KLD   D+           +T  QGE+  +QI    + E S+K   NV  +
Sbjct: 105 DAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 154

Query: 169 F 169
           F
Sbjct: 155 F 155

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 65.4 bits (159), Expect = 1e-13
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 14/138 (10%)

Query: 34  YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I T+  +F    +  +G  V + +WDTAGQE Y  +    YR A    L + + S  SY
Sbjct: 29  HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSY 88

Query: 93  ENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           ++++ KW+ ++  Y+P GV  +L+G K D  + +           V   QG +L K+ G 
Sbjct: 89  QHIM-KWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM 137

Query: 152 SYYIECSSKTQQNVKAVF 169
            ++ E S+ T +N+K  F
Sbjct: 138 DFF-ETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 13/125 (10%)

Query: 46  VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH 105
           V  +G  + L +WDTAGQE +  +    YR A+  +L + +    S+   L +W+ E++ 
Sbjct: 49  VEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFR-CLPEWLREIEQ 107

Query: 106 Y-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 164
           Y +  V  +LVG K+DL E +           V+  + EE        YY+E S+K   N
Sbjct: 108 YANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDA-QDMYYLETSAKESDN 156

Query: 165 VKAVF 169
           V+ +F
Sbjct: 157 VEKLF 161

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 34  YIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    V   G  V L +WDTAGQE +  +    YRG    ++ + + +  S+
Sbjct: 35  YITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESF 94

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
            NV K+W+ E++     V  VLVG K           D P    V T    +   Q+G S
Sbjct: 95  VNV-KRWLQEIEQNCDDVCKVLVGNK----------NDDPERKVVETEDAYKFAGQMGIS 143

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVI--KPPQKQKEKKKKQR 191
            + E S+K   NV+ +F+   ++V+  K     K+++++Q 
Sbjct: 144 LF-ETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQN 183

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 17/110 (15%)

Query: 75  RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134
           R A+V  L +S+   ++ E +  KW+P ++     VP++LVG K DLR+           
Sbjct: 71  RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS-------- 122

Query: 135 VPVTTAQGEELRKQIGASY-----YIECSSKTQQNVKAVFDAAIKVVIKP 179
                A  EE    I   +      +ECS+KT  NV  VF  A K V+ P
Sbjct: 123 ----QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLHP 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 64.1 bits (156), Expect = 4e-13
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 14/166 (8%)

Query: 6   KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 65
           KL  L +  V    L V  V G   +  Y PT+ D++   +  +     L + DTAG E 
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQG-IFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQ 61

Query: 66  YNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRE 123
           +  +R L  +    F L +S+ ++ S+ ++  L++ I  ++     VP++LVG K DL +
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTED-VPMILVGNKCDLED 120

Query: 124 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
           ++           V+  +G+ L +Q G   ++E S+K++ NV  +F
Sbjct: 121 ERV----------VSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 63.8 bits (155), Expect = 8e-13
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 16/144 (11%)

Query: 43  SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE 102
           +  ++ +G  V L LWDT+GQ  +  +     RGA   +L + + +R S++ +  +WI E
Sbjct: 45  TTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKE 103

Query: 103 LQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162
           +  ++PGVP +LVG +L L   +           V T Q +   ++ G +++ E S    
Sbjct: 104 IDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGMTFF-EVSPLCN 152

Query: 163 QNVKAVFDAAIKVVI----KPPQK 182
            N+   F    ++V+    +PPQ 
Sbjct: 153 FNITESFTELARIVLMRHGRPPQS 176

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 63.7 bits (155), Expect = 8e-13
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 14/143 (9%)

Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I TV   F+  VV  +G  V L +WDTAGQE +  +    YR A   +L + + +++S+
Sbjct: 30  FIATVGIQFTNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSF 89

Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           +N+ + W+ E+  Y    V ++L+G K          AD  G   V    GE L K+ G 
Sbjct: 90  DNI-RAWLTEILEYAQSDVVIMLLGNK----------ADMSGERVVKREDGERLAKEYGV 138

Query: 152 SYYIECSSKTQQNVKAVFDAAIK 174
             ++E S+KT  NV+  F A  K
Sbjct: 139 P-FMETSAKTGLNVELAFTAVAK 160

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 63.8 bits (155), Expect = 1e-12
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 49  EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYS 107
           EG TV   +WDTAGQE Y  +    YRGA   +L + +  R +++NV  +W+ EL+ H  
Sbjct: 57  EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQ-RWLRELRDHAD 115

Query: 108 PGVPVVLVGTKLDLR-------EDKHYLADHPGL 134
             + +++ G K DL        ED   LA+  GL
Sbjct: 116 SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL 149

Length = 216

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 23/142 (16%)

Query: 33  DYIPTV-----FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 87
            Y+ T+       +F  N       +   +WDTAGQE +  LR   Y      ++ F + 
Sbjct: 28  KYVATLGVEVHPLDFHTN----RGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 83

Query: 88  SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147
           SR +Y+NV   W  +L      +P+VL G K+D+++ K           V   Q    RK
Sbjct: 84  SRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK-----------VKPKQITFHRK 131

Query: 148 QIGASYYIECSSKTQQNVKAVF 169
           +     Y E S+K+  N +  F
Sbjct: 132 KN--LQYYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 61.4 bits (149), Expect = 4e-12
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP 108
           G   +L LWDTAGQE +  +    YRGA   ++ F L   AS E+  ++W+ + L+   P
Sbjct: 46  GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT-RQWLEDALKENDP 104

Query: 109 G-VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167
             V + LVGTK DL          P    +      +L +++ A Y+   S+ T +NV+ 
Sbjct: 105 SSVLLFLVGTKKDLSS--------PAQYALMEQDAIKLAREMKAEYW-AVSALTGENVRD 155

Query: 168 VF 169
            F
Sbjct: 156 FF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 60.3 bits (146), Expect = 1e-11
 Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 19/158 (12%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
            + PT+ D +      +     L + DTAGQ ++  +R    R  + F++ +S+  R S+
Sbjct: 30  YHDPTIEDAYKTQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSF 89

Query: 93  ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +     K+ I  ++  +  +P+VLVG K+DL + +           VTT +G  L ++  
Sbjct: 90  QEASEFKELITRVRL-TEDIPLVLVGNKVDLEQQRQ----------VTTEEGRNLAREFN 138

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKK 188
             ++ E S+  +  +   F   ++ +     ++KE   
Sbjct: 139 CPFF-ETSAALRFYIDDAFHGLVREI-----RRKESMP 170

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 58.7 bits (142), Expect = 5e-11
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 13/121 (10%)

Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
           G  + L +WDTAGQE +  +    YRGA   ++ + +  R++Y N L  W+ + ++  +P
Sbjct: 48  GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNP 106

Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
              + L+G K DL   +           VT  + ++   + G   ++ECS+KT +NV+  
Sbjct: 107 NTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTGENVEDA 155

Query: 169 F 169
           F
Sbjct: 156 F 156

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 58.2 bits (141), Expect = 6e-11
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 46  VVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
           V  +G  + + LWDTAGQE + + +    YR     V  + + + AS+ + L  WI E +
Sbjct: 44  VEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHS-LPSWIEECE 102

Query: 105 HYS--PGVPVVLVGTKLDLRE 123
            +S    VP +LVG K DLRE
Sbjct: 103 QHSLPNEVPRILVGNKCDLRE 123

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 22/153 (14%)

Query: 54  NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV 113
           N+ +WDTAG+E ++ L  +  RGA   +L + + +  S E +  +++      +      
Sbjct: 45  NISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFA 104

Query: 114 LVGTKLDLREDKHYLADHPGLVP---------VTTAQGEELRKQI-------------GA 151
           +VG KLDL E+                     VT    +   K+I               
Sbjct: 105 VVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAE 164

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
               E S+KT  NV  +F+    +V+     Q+
Sbjct: 165 KMCFETSAKTGYNVDELFEYLFNLVLPLILAQR 197

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 46  VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPEL 103
           +  +G T  L +WD  G+E+      +  + AD  +L + L  R S   V  L  W+P L
Sbjct: 41  LEVDGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL 100

Query: 104 QHYSPGVPVVLVGTKL 119
           +     +PV+LVG KL
Sbjct: 101 RKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 41/202 (20%)

Query: 23  LSVSGRSSIWDYIPTVFDN---------FSANV--VAEGTTVNLGLWDTAGQEDYNRLRP 71
           L V   S I  Y+  VF           F+  V      T V L LWD AGQE +  +  
Sbjct: 9   LGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTR 68

Query: 72  LSYRGADVFVLAFSLVSRASYENVLKKWIPELQ---HYSPG--VPVVLVGTKLDLREDKH 126
           + Y+GA   ++ F +   +++E VL KW  +L        G  +P +L+  K DL++++ 
Sbjct: 69  VYYKGAVGAIIVFDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPALLLANKCDLKKERL 127

Query: 127 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK-------- 178
                         Q ++  K+ G   + E S+K   N++      +K ++K        
Sbjct: 128 A---------KDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSP 178

Query: 179 -PPQ------KQKEKKKKQRGC 193
            P +      KQ+    K + C
Sbjct: 179 EPDEDNVIDLKQETTTSKSKSC 200

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%)

Query: 46  VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH 105
           V     +V L ++D+AGQE ++ +    +    V  + + + +  S+ N   +WI  ++ 
Sbjct: 46  VPDTSDSVELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNC-SRWINRVRT 104

Query: 106 YSPGV--PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
           +S G+  P VLVG K DL + +           V  AQ + L +     +Y E S+K   
Sbjct: 105 HSHGLHTPGVLVGNKCDLTDRRE----------VDAAQAQALAQANTLKFY-ETSAKEGV 153

Query: 164 NVKAVFD 170
             +A F 
Sbjct: 154 GYEAPFL 160

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 17/150 (11%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +Y  T+  D  S  +  +   V L LWDTAGQE +  L P   R +   ++ + + +R S
Sbjct: 8   NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS 67

Query: 92  YENVLKKWIPE-LQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +EN   KWI + L      V + LVG K DL +          L  VT  +G +  ++  
Sbjct: 68  FENT-TKWIQDILNERGKDVIIALVGNKTDLGD----------LRKVTYEEGMQKAQEYN 116

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180
             ++ E S+K   N+K +F    K+  K P
Sbjct: 117 TMFH-ETSAKAGHNIKVLFK---KIAAKLP 142

Length = 176

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 34  YIPTVFDN-----FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS 88
           YIPT+        F  N       +   +WDTAGQE +  LR   Y      ++ F + S
Sbjct: 38  YIPTLGVEVHPLKFYTN----CGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS 93

Query: 89  RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 125
           R +Y+NV   W  ++      +P+VLVG K+D+++ +
Sbjct: 94  RITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ 129

Length = 215

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 19/152 (12%)

Query: 34  YIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           Y+PT+  D     V      V +  +D +G  +Y  +R   Y+     +L + +  R S+
Sbjct: 29  YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSF 88

Query: 93  ENVLKKWIPELQHYSPG------VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           E  L  W+ E++           + VV+   K+DL + +           V+  +G    
Sbjct: 89  EA-LDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWA 137

Query: 147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
           +  G  Y+ E S+ T + V  +F      ++ 
Sbjct: 138 ESKGFKYF-ETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 19/147 (12%)

Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y PT+ D         G    L + DT+G   +  +R LS    DVF+L FSL +R S+E
Sbjct: 29  YTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFE 88

Query: 94  NV--LKKWIPELQ-------HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 144
            V  L++ I E +         +  +P+V+ G K D    +           V   + E+
Sbjct: 89  EVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQ 138

Query: 145 LRKQIGASYYIECSSKTQQNVKAVFDA 171
           L        Y E S+K   N+  +F A
Sbjct: 139 LVGGDENCAYFEVSAKKNSNLDEMFRA 165

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +    WDTAGQE +  LR   Y      ++ F + +R +Y+NV   W  +L      +P+
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 120

Query: 113 VLVGTKLDLREDK 125
           VL G K+D++  +
Sbjct: 121 VLCGNKVDVKNRQ 133

Length = 219

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  LR   Y      ++ F + +R +Y+NV   W  +L      +P+
Sbjct: 44  IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNV-PNWHRDLVRVCENIPI 102

Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 103 VLCGNKVDVKDRK 115

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 29/157 (18%)

Query: 46  VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ- 104
           V  +G    L ++D   QED   L     +  D +V+ +S+  R+S+E        EL+ 
Sbjct: 42  VSVDGEEATLVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKA-----SELRI 96

Query: 105 -----HYSPGVPVVLVGTKLDL---REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156
                  +  +P++LVG K DL   RE             V+  +G           +IE
Sbjct: 97  QLRRARQAEDIPIILVGNKSDLVRSRE-------------VSVQEGRACAVVFDCK-FIE 142

Query: 157 CSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGC 193
            S+  Q NV  +F+  ++ V +  +  KEK  ++   
Sbjct: 143 TSAALQHNVDELFEGIVRQV-RLRRDSKEKNTRRMAS 178

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 20/142 (14%)

Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           YIPT+ D +   +    +   L + DT G   +  ++ LS      F+L +S+ S+ S E
Sbjct: 30  YIPTIEDTYRQVISCSKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLE 89

Query: 94  NVLKKW--IPELQ-HYSPGVPVVLVGTKLD---LREDKHYLADHPGLVPVTTAQGEELRK 147
            +   +  I E++ +    +P++LVG K D    RE             V++++G  L +
Sbjct: 90  ELKPIYELICEIKGNNLEKIPIMLVGNKCDESPSRE-------------VSSSEGAALAR 136

Query: 148 QIGASYYIECSSKTQQNVKAVF 169
               + ++E S+KT  NV+ +F
Sbjct: 137 TWNCA-FMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 13/135 (9%)

Query: 37  TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV- 95
           TV +  S      G  V + + DT+G   +  +R LS +  D F L +S+    S+E V 
Sbjct: 31  TVEELHSKEYEVAGVKVTIDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVK 90

Query: 96  -LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154
            L++ I E++     VP+V+VG K+D   ++   A              EL    G   +
Sbjct: 91  RLREEILEVKE-DKFVPIVVVGNKIDSLAERQVEAA-------DALSTVELDWNNG---F 139

Query: 155 IECSSKTQQNVKAVF 169
           +E S+K  +NV  VF
Sbjct: 140 VEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 33  DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +YI T+  NF    +   GT +   +WD  GQ ++  + PL  + A   +  F L  +++
Sbjct: 28  EYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCKDAVAILFMFDLTRKST 87

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDL 121
             ++ K+W  + + ++     +LVGTK DL
Sbjct: 88  LNSI-KEWYRQARGFNKTAIPILVGTKYDL 116

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 49  EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP 108
           E   + L +WD  GQE Y+           +++L F L       + +  W+ +++ +  
Sbjct: 47  ERKKIRLNVWDFGGQEIYHATHQFFLTSRSLYLLVFDL-RTGDEVSRVPYWLRQIKAFGG 105

Query: 109 GVPVVLVGTKLDLRED---------KHYLADHPGLVPVTTAQG---EELRKQI 149
             PV+LVGT +D   D         K + A    +  V+   G    EL+K I
Sbjct: 106 VSPVILVGTHIDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAI 158

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 19/138 (13%)

Query: 42  FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG-ADVFVLAFSLVSRASYENVLKKWI 100
           F   V+ +G +  L + D  G  D        + G  D  +  FSL   AS++ V  +  
Sbjct: 36  FKKEVLVDGQSHLLLIRDEGGAPD------AQFAGWVDAVIFVFSLEDEASFQTV-YRLY 88

Query: 101 PELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158
            +L  Y     +P++LVGT+          A +P +  +  A+  +L   +    Y E  
Sbjct: 89  HQLSSYRNISEIPLILVGTQ------DAISASNPRV--IDDARARQLCADMKRCSYYETC 140

Query: 159 SKTQQNVKAVF-DAAIKV 175
           +    NV+ VF +AA K+
Sbjct: 141 ATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 24/125 (19%)

Query: 8   ACLFATQ---VTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE 64
             L   Q    T+ +  V++    S   D IPTV   F+   V +G  V + +WD  GQ 
Sbjct: 2   ITLVGLQNSGKTTLV-NVIASGQFSE--DTIPTV--GFNMRKVTKGN-VTIKVWDLGGQP 55

Query: 65  DYNRLRPL--SY-RGADVFVLAFSLVSRASYE---NVLKKWI--PELQHYSPGVPVVLVG 116
              R R +   Y RG +  V       R   E   N L   +  P L+    G+P++++G
Sbjct: 56  ---RFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLE----GIPLLVLG 108

Query: 117 TKLDL 121
            K DL
Sbjct: 109 NKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
KOG0395	196	consensus Ras-related GTPase [General function pre	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.98
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
PTZ00099	176	rab6; Provisional	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
PLN00023	334	GTP-binding protein; Provisional	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.94
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.94
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.93
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
KOG1673	205	consensus Ras GTPases [General function prediction	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.92
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.92
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.92
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.91
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.91
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.91
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.9
PRK12299	335	obgE GTPase CgtA; Reviewed	99.9
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.89
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.89
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.89
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.89
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.89
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.88
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.88
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.88
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.88
PRK04213	201	GTP-binding protein; Provisional	99.88
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.88
PRK15494	339	era GTPase Era; Provisional	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.86
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.86
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.86
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.85
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.85
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
PRK12297	424	obgE GTPase CgtA; Reviewed	99.85
cd00881	189	GTP_translation_factor GTP translation factor fami	99.85
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.84
PRK00089	292	era GTPase Era; Reviewed	99.84
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.84
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.84
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.84
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.84
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.83
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.83
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.83
PRK12296	500	obgE GTPase CgtA; Reviewed	99.83
PRK11058	426	GTPase HflX; Provisional	99.82
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.82
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.82
PRK05433	600	GTP-binding protein LepA; Provisional	99.82
CHL00189	742	infB translation initiation factor 2; Provisional	99.81
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.81
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.81
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.81
PRK12298	390	obgE GTPase CgtA; Reviewed	99.81
COG1159	298	Era GTPase [General function prediction only]	99.81
PRK05306	787	infB translation initiation factor IF-2; Validated	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.79
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.78
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.78
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.78
PRK00093	435	GTP-binding protein Der; Reviewed	99.78
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.77
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.77
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.77
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.76
COG2229	187	Predicted GTPase [General function prediction only	99.76
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.74
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.74
PRK10218	607	GTP-binding protein; Provisional	99.73
COG1160	444	Predicted GTPases [General function prediction onl	99.72
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.72
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.72
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.71
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.71
COG0486	454	ThdF Predicted GTPase [General function prediction	99.71
PRK04004	586	translation initiation factor IF-2; Validated	99.7
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.7
PRK12317	425	elongation factor 1-alpha; Reviewed	99.69
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.69
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.68
COG0218	200	Predicted GTPase [General function prediction only	99.67
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.67
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.67
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.66
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.65
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.65
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.65
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.64
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.63
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.63
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.62
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.6
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.59
PRK12736	394	elongation factor Tu; Reviewed	99.59
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.59
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.58
PRK12735	396	elongation factor Tu; Reviewed	99.58
PRK13351	687	elongation factor G; Reviewed	99.57
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.57
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.56
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.56
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.56
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.55
COG0536	369	Obg Predicted GTPase [General function prediction	99.54
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.54
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.54
CHL00071	409	tufA elongation factor Tu	99.51
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.5
COG2262	411	HflX GTPases [General function prediction only]	99.49
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.48
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.48
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.47
PRK00049	396	elongation factor Tu; Reviewed	99.46
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.45
PLN03126	478	Elongation factor Tu; Provisional	99.44
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.44
PRK09602	396	translation-associated GTPase; Reviewed	99.44
PLN03127	447	Elongation factor Tu; Provisional	99.44
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.44
COG1084	346	Predicted GTPase [General function prediction only	99.43
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.43
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.43
COG1163	365	DRG Predicted GTPase [General function prediction	99.43
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.43
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.42
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.42
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.41
PLN00043	447	elongation factor 1-alpha; Provisional	99.4
KOG0090	238	consensus Signal recognition particle receptor, be	99.4
PRK14845	1049	translation initiation factor IF-2; Provisional	99.39
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.39
KOG1145	683	consensus Mitochondrial translation initiation fac	99.36
PTZ00141	446	elongation factor 1- alpha; Provisional	99.34
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.34
PRK12739	691	elongation factor G; Reviewed	99.34
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.33
PRK09866	741	hypothetical protein; Provisional	99.33
PRK12740	668	elongation factor G; Reviewed	99.32
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.32
COG3596	296	Predicted GTPase [General function prediction only	99.3
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.28
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.27
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.27
PRK00007	693	elongation factor G; Reviewed	99.2
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.19
PRK00098	298	GTPase RsgA; Reviewed	99.16
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.13
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.07
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.06
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.06
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.05
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.04
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.03
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.02
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.02
PTZ00258	390	GTP-binding protein; Provisional	99.01
PRK12289	352	GTPase RsgA; Reviewed	98.99
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.99
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.98
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.96
PRK09601	364	GTP-binding protein YchF; Reviewed	98.91
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.91
PRK07560	731	elongation factor EF-2; Reviewed	98.91
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.9
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.9
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.9
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.9
PTZ00416	836	elongation factor 2; Provisional	98.9
PRK12288	347	GTPase RsgA; Reviewed	98.88
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.86
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.85
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.83
PRK13768	253	GTPase; Provisional	98.83
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.83
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.79
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.78
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.76
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.76
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.74
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.69
KOG2486	320	consensus Predicted GTPase [General function predi	98.67
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.65
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.65
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.63
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.61
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.61
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.6
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.6
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.58
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.57
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.57
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.56
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.56
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.51
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.48
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.47
KOG1143	591	consensus Predicted translation elongation factor	98.47
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.46
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.45
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.45
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.4
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.4
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.35
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.34
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.29
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.28
KOG0410	410	consensus Predicted GTP binding protein [General f	98.28
PRK13796	365	GTPase YqeH; Provisional	98.27
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.24
PRK01889	356	GTPase RsgA; Reviewed	98.22
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.17
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.15
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.15
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.14
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.14
COG1162	301	Predicted GTPases [General function prediction onl	98.08
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.07
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.04
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.01
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	97.99
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.97
COG1161	322	Predicted GTPases [General function prediction onl	97.94
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.91
KOG0467	887	consensus Translation elongation factor 2/ribosome	97.91
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.84
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.82
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.8
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.79
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	97.76
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.73
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.66
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.65
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.64
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.63
PRK12289	352	GTPase RsgA; Reviewed	97.53
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.5
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.46
PRK12288	347	GTPase RsgA; Reviewed	97.44
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.41
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	97.38
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.35
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.35
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.34
KOG0099	379	consensus G protein subunit Galphas, small G prote	97.34
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.33
PRK13796	365	GTPase YqeH; Provisional	97.31
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.29
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.28
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.25
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	97.22
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.16
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.11
KOG0460	449	consensus Mitochondrial translation elongation fac	97.1
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.04
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.03
PRK00098	298	GTPase RsgA; Reviewed	96.97
PRK13695	174	putative NTPase; Provisional	96.94
COG1162	301	Predicted GTPases [General function prediction onl	96.9
cd03110	179	Fer4_NifH_child This protein family's function is	96.9
PRK10416	318	signal recognition particle-docking protein FtsY;	96.77
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.68
cd03112	158	CobW_like The function of this protein family is u	96.67
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.65
PRK14974	336	cell division protein FtsY; Provisional	96.54
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.54
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	96.47
COG1161	322	Predicted GTPases [General function prediction onl	96.16
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	96.06
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	95.96
KOG2484	435	consensus GTPase [General function prediction only	95.92
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	95.61
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.61
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	95.44
COG3523	1188	IcmF Type VI protein secretion system component Va	95.32
KOG2484	435	consensus GTPase [General function prediction only	95.27
cd03111	106	CpaE_like This protein family consists of proteins	95.14
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.12
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	94.98
COG0523	323	Putative GTPases (G3E family) [General function pr	94.98
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	94.8
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	94.74
KOG2423	572	consensus Nucleolar GTPase [General function predi	94.66
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	94.6
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.54
PRK08118	167	topology modulation protein; Reviewed	94.47
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	94.46
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	94.4
PRK00771	437	signal recognition particle protein Srp54; Provisi	94.36
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	94.33
PRK14738	206	gmk guanylate kinase; Provisional	94.31
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	94.23
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	94.2
KOG2423	572	consensus Nucleolar GTPase [General function predi	94.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	93.98
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	93.94
PRK14737	186	gmk guanylate kinase; Provisional	93.84
PRK06217	183	hypothetical protein; Validated	93.79
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	93.77
PRK07261	171	topology modulation protein; Provisional	93.75
PF00005	137	ABC_tran: ABC transporter This structure is on hol	93.7
PRK10867	433	signal recognition particle protein; Provisional	93.61
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	93.52
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	93.48
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	93.36
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	93.23
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	93.19
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	93.14
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	93.12
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	93.05
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	93.0
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	92.99
PRK08099	399	bifunctional DNA-binding transcriptional repressor	92.71
COG3638	258	ABC-type phosphate/phosphonate transport system, A	92.66
COG4598	256	HisP ABC-type histidine transport system, ATPase c	92.65
PHA02518	211	ParA-like protein; Provisional	92.61
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	92.53
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	92.48
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	92.42
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	92.34
PRK14530	215	adenylate kinase; Provisional	92.28
KOG0780	483	consensus Signal recognition particle, subunit Srp	92.24
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	92.14
PRK05057	172	aroK shikimate kinase I; Reviewed	92.09
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	92.0
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	91.97
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	91.91
COG0411	250	LivG ABC-type branched-chain amino acid transport	91.9
PRK00300	205	gmk guanylate kinase; Provisional	91.87
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	91.87
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	91.83
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	91.82
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	91.81
PRK05480	209	uridine/cytidine kinase; Provisional	91.79
COG4525	259	TauB ABC-type taurine transport system, ATPase com	91.78
COG5008	375	PilU Tfp pilus assembly protein, ATPase PilU [Cell	91.72
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	91.67
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	91.63
COG0410	237	LivF ABC-type branched-chain amino acid transport	91.61
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	91.58
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	91.56
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	91.56
PF13555	62	AAA_29: P-loop containing region of AAA domain	91.47
PRK13851	344	type IV secretion system protein VirB11; Provision	91.45
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	91.42
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	91.31
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	91.3
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	91.28
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	91.25
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	91.23
cd03269	210	ABC_putative_ATPase This subfamily is involved in	91.21
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	91.2
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	91.19
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	91.16
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	91.15
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	91.15
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	91.08
smart00382	148	AAA ATPases associated with a variety of cellular	91.08
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	91.07
PRK13949	169	shikimate kinase; Provisional	91.07
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	91.05
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	91.04
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	91.02
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	91.0
PF05879	742	RHD3: Root hair defective 3 GTP-binding protein (R	90.99
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	90.98
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	90.98

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-43  Score=251.56  Aligned_cols=166  Identities=30%  Similarity=0.528  Sum_probs=157.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      .++||+++|+++|| ||+|+.||.++.|.+.|..|+|.++.. .+.++|+.+.|+||||+|||+|+++..+||++|+++|
T Consensus         8 ylFKiiliGds~VG-KtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    8 YLFKIILIGDSGVG-KTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             eEEEEEEECCCCcC-hhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            57999999999999 999999999999999999999999954 8999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||+++.+||+.+ ..|+.++.++. +++|.++||||+|+.+.+.+          ..+++++|+..++.+.|+|+||+
T Consensus        87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v----------~~~~a~~fa~~~~~~~f~ETSAK  155 (205)
T KOG0084|consen   87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRVV----------STEEAQEFADELGIPIFLETSAK  155 (205)
T ss_pred             EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhheec----------CHHHHHHHHHhcCCcceeecccC
Confidence            99999999999999 99999999988 67899999999999998885          99999999999999449999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCC
Q 028595          161 TQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++.|++++|..+...+..+.
T Consensus       156 ~~~NVe~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  156 DSTNVEDAFLTLAKELKQRK  175 (205)
T ss_pred             CccCHHHHHHHHHHHHHHhc
Confidence            99999999999999887543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.9e-43  Score=247.01  Aligned_cols=168  Identities=29%  Similarity=0.469  Sum_probs=156.3

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      ...+|||++|+.+|| ||||+.||..+.|.+...||+|.-| .+.+.+++..+++.||||+|||+|.++.++||++|+++
T Consensus         3 ~~~~KvvLLG~~~VG-KSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVG-KSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             cceEEEEEECCCCCC-chhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            347899999999999 9999999999999988889999888 77899999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||+++.+||..+ +.|...+++.. +++-+.|||||.|+.+.+.+          ..++++.++++.|. .|+|+||
T Consensus        82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~V----------~~~ea~~yAe~~gl-l~~ETSA  149 (200)
T KOG0092|consen   82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERREV----------EFEEAQAYAESQGL-LFFETSA  149 (200)
T ss_pred             EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhcccc----------cHHHHHHHHHhcCC-EEEEEec
Confidence            999999999999999 89999998877 56778899999999987775          99999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCcc
Q 028595          160 KTQQNVKAVFDAAIKVVIKPPQK  182 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~~~  182 (207)
                      +++.|++++|..|.+.++..+..
T Consensus       150 KTg~Nv~~if~~Ia~~lp~~~~~  172 (200)
T KOG0092|consen  150 KTGENVNEIFQAIAEKLPCSDPQ  172 (200)
T ss_pred             ccccCHHHHHHHHHHhccCcccc
Confidence            99999999999999999876543

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-41  Score=241.91  Aligned_cols=165  Identities=31%  Similarity=0.423  Sum_probs=155.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+|++++|+.+|| |||||+||+.+.|...|.+|+|.+| ++++.+.|.++.|++|||+|||+|+++.+.|+++++++|+
T Consensus        22 ~~KlVflGdqsVG-KTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   22 KYKLVFLGDQSVG-KTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             EEEEEEEccCccc-hHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            3799999999999 9999999999999999999999999 7789999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-C-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-P-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||++|..||++. .+|++.+...+ + ++-+++||||.||.+.+++          +.++++..+++++. .|+++||+
T Consensus       101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv----------s~eEg~~kAkel~a-~f~etsak  168 (221)
T KOG0094|consen  101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV----------SIEEGERKAKELNA-EFIETSAK  168 (221)
T ss_pred             EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhhh----------hHHHHHHHHHHhCc-EEEEeccc
Confidence            9999999999999 89999998776 4 5788999999999999886          99999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCc
Q 028595          161 TQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      .|.||.++|..|...+.....
T Consensus       169 ~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  169 AGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             CCCCHHHHHHHHHHhccCccc
Confidence            999999999998888877654

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2.6e-40  Score=245.47  Aligned_cols=188  Identities=45%  Similarity=0.730  Sum_probs=158.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|+.+|| ||||+++|..+.+...|.||+++.+...+.+++..+.+.+|||+|+++|+.+++.|++++|++|+
T Consensus         2 ~~~ki~~vG~~~vG-KTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVG-KTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCC-HHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            45799999999999 99999999999999999999998887777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++|++.+...|...+....+++|++|||||.|+.+......  .....+.+..++++++++.++..+|+|+||+
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            99999999999995479888877667899999999999975432100  0012234678899999999985589999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEe
Q 028595          161 TQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  196 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~  196 (207)
                      +|.||+++|+++++.+..+..   . + ++++|.+|
T Consensus       161 ~g~~v~e~f~~l~~~~~~~~~---~-~-~~~~c~~~  191 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLNPTP---I-K-DTKSCVLL  191 (191)
T ss_pred             CCCCHHHHHHHHHHHHhcccc---c-c-CCCCceeC
Confidence            999999999999999987642   1 1 22358764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3.7e-40  Score=241.08  Aligned_cols=175  Identities=74%  Similarity=1.130  Sum_probs=156.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|++++| ||+|+.+|..+.+...|.||+++.+...+.+++..+.+.||||+|++++..++..+++++|++|+|
T Consensus         1 ~~kivv~G~~~vG-KTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (176)
T cd04133           1 FIKCVTVGDGAVG-KTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   79 (176)
T ss_pred             CeEEEEECCCCCc-HHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence            3699999999999 999999999999999999999998877888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  163 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  163 (207)
                      ||+++++||+.+...|+..+....+++|++|||||+|+.+.+......+..+.+..++++++++.++..+|+||||++|.
T Consensus        80 yd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          80 FSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999999856899999877778999999999999765433333445556789999999999997579999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 028595          164 NVKAVFDAAIKVVIKP  179 (207)
Q Consensus       164 ~i~~~f~~i~~~~~~~  179 (207)
                      ||+++|+.+++.+.++
T Consensus       160 nV~~~F~~~~~~~~~~  175 (176)
T cd04133         160 NVKAVFDAAIKVVLQP  175 (176)
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999999987554

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-40  Score=239.20  Aligned_cols=166  Identities=28%  Similarity=0.487  Sum_probs=156.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|+++|| ||+|+.+|..+.+...+..|+|.+| ...+.++|..+.+++|||+||++++.+...|+++|++++
T Consensus        11 ~~~kvlliGDs~vG-Kt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~   89 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVG-KTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL   89 (207)
T ss_pred             eEEEEEEECCCCCc-hhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence            47899999999999 9999999999999999999999999 558999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||+++..||+++ ..|+..+.++.+ ++|.++||||+|+...+++          ..+.++++|.++|. .|+|+||+
T Consensus        90 LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V----------~~e~ge~lA~e~G~-~F~EtSAk  157 (207)
T KOG0078|consen   90 LVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQV----------SKERGEALAREYGI-KFFETSAK  157 (207)
T ss_pred             EEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeeccccccccccc----------cHHHHHHHHHHhCC-eEEEcccc
Confidence            99999999999999 679999998884 8999999999999887775          99999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCc
Q 028595          161 TQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +|.||+++|..+++.+..+..
T Consensus       158 ~~~NI~eaF~~La~~i~~k~~  178 (207)
T KOG0078|consen  158 TNFNIEEAFLSLARDILQKLE  178 (207)
T ss_pred             CCCCHHHHHHHHHHHHHhhcc
Confidence            999999999999999986543

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-41  Score=236.77  Aligned_cols=164  Identities=26%  Similarity=0.423  Sum_probs=156.2

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      .++|++++|+.+|| ||+|+.+|+.+.|.+.+..|+|.+| ...+.++++.++|+||||+|||.+++..+.||+++.++|
T Consensus         5 ~~fKyIiiGd~gVG-KSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVG-KSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             ceEEEEEECCCCcc-HHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            57999999999999 9999999999999999999999999 668999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||+++++||.++ ..|+..+.+.. ++..++++|||+|+...+.+          +.+++++||+++|+ .|+|+||+
T Consensus        84 LVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~V----------s~EEGeaFA~ehgL-ifmETSak  151 (216)
T KOG0098|consen   84 LVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARREV----------SKEEGEAFAREHGL-IFMETSAK  151 (216)
T ss_pred             EEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhccccc----------cHHHHHHHHHHcCc-eeehhhhh
Confidence            99999999999999 89999998885 89999999999999988885          99999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++|++++|..+...+++.
T Consensus       152 t~~~VEEaF~nta~~Iy~~  170 (216)
T KOG0098|consen  152 TAENVEEAFINTAKEIYRK  170 (216)
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence            9999999999999888754

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3.1e-39  Score=244.69  Aligned_cols=175  Identities=32%  Similarity=0.578  Sum_probs=153.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|+.+|| ||+|+++|..+.|...|.||++..+...+.+++..+.+.||||+|++.|..++..|++++|++|+|
T Consensus        13 ~~KIvvvGd~~VG-KTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          13 RCKLVLVGDVQCG-KTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eEEEEEECCCCCc-HHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            5799999999999 999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC--CCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH--PGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++||+.+...|+..+.+..++.|+++||||+|+.+....+...  ...+.+..++++++++.+++..|+||||++
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt  171 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT  171 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986578999998877889999999999986432111000  012346899999999999986799999999


Q ss_pred             CC-CHHHHHHHHHHHHhCC
Q 028595          162 QQ-NVKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~-~i~~~f~~i~~~~~~~  179 (207)
                      |+ ||+++|..++..+.+.
T Consensus       172 g~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         172 SEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            98 8999999999888753

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=5.3e-39  Score=236.28  Aligned_cols=175  Identities=33%  Similarity=0.595  Sum_probs=153.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|+.+|| ||||+++|..+.+...|.||++..+...+.+++..+.+.||||+|++.|..+++.+++++|++|+
T Consensus         4 ~~~KivvvGd~~vG-KTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           4 VKCKIVVVGDSQCG-KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             ceEEEEEECCCCCC-HHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            46799999999999 99999999999999999999999888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC--CCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH--PGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++|++.+...|+..+.+..++.|++|||||+|+.+....+...  ...+.+..++++++++++++.+|+||||+
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk  162 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  162 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence            9999999999997678999998877899999999999996531110000  01234689999999999996689999999


Q ss_pred             CCCC-HHHHHHHHHHHHhC
Q 028595          161 TQQN-VKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~-i~~~f~~i~~~~~~  178 (207)
                      +|.| |+++|..+++.++.
T Consensus       163 ~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         163 QSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9998 99999999987653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=5.4e-39  Score=237.38  Aligned_cols=165  Identities=25%  Similarity=0.433  Sum_probs=151.6

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|+.+|| ||||+++|.++.+...+.||.+..+ ...+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus         4 ~~~~KivviG~~~vG-KTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           4 DYLLKFLLVGDSDVG-KGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CceeEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            456899999999999 9999999999998888888988777 44678899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |+|||+++++|++++ ..|++.+....+++|++|||||.|+.+.+.+          ..++++.+++.+++ +|+|+||+
T Consensus        83 llVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~v----------~~~~~~~~a~~~~~-~~~e~SAk  150 (189)
T cd04121          83 ILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQV----------ATEQAQAYAERNGM-TFFEVSPL  150 (189)
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccCC----------CHHHHHHHHHHcCC-EEEEecCC
Confidence            999999999999999 8999999877789999999999999776654          88999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.||+++|+++++.+..+
T Consensus       151 ~g~~V~~~F~~l~~~i~~~  169 (189)
T cd04121         151 CNFNITESFTELARIVLMR  169 (189)
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999888744

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.2e-38  Score=233.91  Aligned_cols=173  Identities=33%  Similarity=0.595  Sum_probs=151.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +.||+++|+.+|| ||||+++|.++.+...|.||++..+...+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vG-KTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCG-KTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            4799999999999 999999999999999999999988888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC--CCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++||+.+...|+..+.+.+++.|+++||||+|+.+.......  ....+++..++++++++.+++.+|+||||++
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            99999999999657899999888889999999999999652110000  0012346889999999999976899999999


Q ss_pred             CCC-HHHHHHHHHHHHh
Q 028595          162 QQN-VKAVFDAAIKVVI  177 (207)
Q Consensus       162 ~~~-i~~~f~~i~~~~~  177 (207)
                      |+| |+++|..+++.++
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999998655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.2e-38  Score=240.35  Aligned_cols=175  Identities=34%  Similarity=0.606  Sum_probs=154.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +.||+++|+.+|| ||+|+++|..+.+...|.||++..+...+.+++..+.|.||||+|++.|..+++.+++++|++|+|
T Consensus         1 ~~KIvvvGd~~vG-KTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECG-KTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            4799999999999 999999999999999999999998888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC--CCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH--PGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+...|...+....++.|++|||||+|+.++...+...  ....++..++++.+++.+|+.+|+||||++
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999999778988887777899999999999997543211111  112347889999999999976999999999


Q ss_pred             CCC-HHHHHHHHHHHHhCC
Q 028595          162 QQN-VKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~~-i~~~f~~i~~~~~~~  179 (207)
                      +++ |+++|..++...+.+
T Consensus       160 ~~~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         160 SERSVRDVFHVATVASLGR  178 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhc
Confidence            985 999999999988764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.1e-40  Score=224.36  Aligned_cols=167  Identities=31%  Similarity=0.477  Sum_probs=157.4

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcE
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   79 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~   79 (207)
                      |.+++|.+|+|+++|| ||+|+.+|..+.|..+|..|+|.++.. .+.++|..+.++|||++|+|+|+.+...|+++.++
T Consensus         5 ~dhLfkllIigDsgVG-KssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg   83 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVG-KSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG   83 (198)
T ss_pred             HHHHHHHHeecCCccc-HHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence            5678999999999999 999999999999999999999999955 78999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +++|||++|.+||.++ ..|++.++..++.+|-++||||.|.++.+-          +..++++.|+..+|+ .+||+||
T Consensus        84 v~vVYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSa  151 (198)
T KOG0079|consen   84 VIVVYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSA  151 (198)
T ss_pred             EEEEEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhh
Confidence            9999999999999999 899999999999999999999999987766          499999999999999 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++.+|++.+|.-|.++..+..
T Consensus       152 Ke~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  152 KENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             hhcccchHHHHHHHHHHHHHH
Confidence            999999999999998887543

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.8e-39  Score=221.43  Aligned_cols=166  Identities=28%  Similarity=0.503  Sum_probs=154.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||++||.++|| ||+|+.+|..+.|.+....|+|.+| .+.+.++|..+++-||||+|||+|+.+.+.||++|+++|
T Consensus        10 ~t~KiLlIGeSGVG-KSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen   10 TTFKILLIGESGVG-KSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             eeEEEEEEccCCcc-HHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            35899999999999 9999999999999999888899999 558999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +|||++.+++|..+ ..|++++..++  +++-.++||||+|...++.          |+.+++.+|++++++ -|+|+||
T Consensus        89 lVYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SA  156 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSA  156 (209)
T ss_pred             EEEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcch
Confidence            99999999999999 99999999888  5677789999999876665          599999999999999 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCc
Q 028595          160 KTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ++.+|++..|++++.++++.+.
T Consensus       157 kt~~~V~~~FeelveKIi~tp~  178 (209)
T KOG0080|consen  157 KTRENVQCCFEELVEKIIETPS  178 (209)
T ss_pred             hhhccHHHHHHHHHHHHhcCcc
Confidence            9999999999999999997654

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=6.6e-39  Score=225.57  Aligned_cols=168  Identities=28%  Similarity=0.436  Sum_probs=153.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..||+++|+++|| ||||.|+|.+++|...|..|+|.+| .+.+.++++.+.++||||+|||+|.++.-.+|+++|++++
T Consensus         9 lLKViiLGDsGVG-KtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl   87 (210)
T KOG0394|consen    9 LLKVIILGDSGVG-KTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL   87 (210)
T ss_pred             ceEEEEeCCCCcc-HHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence            4799999999999 9999999999999999999999888 7799999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-C----CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-P----GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  157 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~----~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (207)
                      |||++++.||+.+ ..|.+++.... +    ..|+||+|||+|+....        .|.++.+.++.||.+.|-.||||+
T Consensus        88 vydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyfEt  158 (210)
T KOG0394|consen   88 VYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYFET  158 (210)
T ss_pred             EeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeEEe
Confidence            9999999999999 89988886554 2    58999999999997632        133699999999999987799999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          158 SSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ||+...||+++|..+.+.++..+.
T Consensus       159 SAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  159 SAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             cccccccHHHHHHHHHHHHHhccc
Confidence            999999999999999999986654

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.1e-37  Score=231.16  Aligned_cols=187  Identities=34%  Similarity=0.542  Sum_probs=159.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      .||+++|.+++| ||||+++|.++.+...+.||++..+...+.+++..+.+.||||+|++.+..++..+++++|++|+||
T Consensus         1 ~kivivG~~~vG-KTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACG-KTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            489999999999 9999999999999888999999888777778888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |++++++++.+...|+..+....++.|+++||||+|+.+.+....  .......+..+++..+++..+..+|+++||++|
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            999999999985579998887778899999999999976543100  011112356788899999888558999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEe
Q 028595          163 QNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  196 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~  196 (207)
                      .|++++|+++++.++.++.    ..+.++.|+++
T Consensus       160 ~~v~e~f~~l~~~~~~~~~----~~~~~~~~~~~  189 (189)
T cd04134         160 RGVNEAFTEAARVALNVRP----PHPHSSACTIA  189 (189)
T ss_pred             CCHHHHHHHHHHHHhcccc----cCcCCCcceeC
Confidence            9999999999999987653    45667788874

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2.2e-38  Score=235.05  Aligned_cols=178  Identities=31%  Similarity=0.510  Sum_probs=154.0

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   85 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   85 (207)
                      ||+++|.++|| ||||+++|+.+.+...+.||+++.+...+.+++..+.+.+|||+|++++..++..+++++|++|+|||
T Consensus         1 ki~ivG~~~vG-KTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVG-KTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCC-HHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            68999999999 99999999999998889999998887777889989999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           86 LVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ++++++++.+ ..|+..+....    ++.|+++||||+|+.+.+.+          ...++..+++.++. +|+++||++
T Consensus        80 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~SAk~  147 (190)
T cd04144          80 ITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYEREV----------STEEGAALARRLGC-EFIEASAKT  147 (190)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCcc----------CHHHHHHHHHHhCC-EEEEecCCC
Confidence            9999999998 78887775432    47899999999999765553          77788899999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCc--------chhhhcccCCCeEEe
Q 028595          162 QQNVKAVFDAAIKVVIKPPQ--------KQKEKKKKQRGCLLN  196 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~~--------~~~~~~~~~~~c~~~  196 (207)
                      |.|++++|+++++.+..+.+        ...++++++++|++|
T Consensus       148 ~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         148 NVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             CCCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            99999999999998874322        333455566777764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-38  Score=226.16  Aligned_cols=164  Identities=27%  Similarity=0.468  Sum_probs=155.5

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|+++|| ||-|+.||..+.|..+..+|+|.++ ...+.++++.+..+||||+|||+|+.....||++|.++
T Consensus        12 dylFKiVliGDS~VG-KsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA   90 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVG-KSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   90 (222)
T ss_pred             ceEEEEEEeCCCccc-hhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence            468999999999999 9999999999999999999999999 55899999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||++.+.+|+.+ ..|+.+++.+. +++++++||||+||.+.+.+          ..++++.++++.+. .|+|+||
T Consensus        91 llVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lraV----------~te~~k~~Ae~~~l-~f~EtSA  158 (222)
T KOG0087|consen   91 LLVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRAV----------PTEDGKAFAEKEGL-FFLETSA  158 (222)
T ss_pred             EEEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhcccc----------chhhhHhHHHhcCc-eEEEecc
Confidence            999999999999999 89999999988 79999999999999887764          99999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++..|++++|..++..+..
T Consensus       159 l~~tNVe~aF~~~l~~I~~  177 (222)
T KOG0087|consen  159 LDATNVEKAFERVLTEIYK  177 (222)
T ss_pred             cccccHHHHHHHHHHHHHH
Confidence            9999999999999988864

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.1e-37  Score=232.39  Aligned_cols=161  Identities=25%  Similarity=0.469  Sum_probs=146.9

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      .|+++|..+|| ||||+++|..+.|...|.+|++..+ ...+.+++..+.+++|||+|+++|++++..|++++|++|+||
T Consensus         2 ~vvvlG~~gVG-KTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           2 QVIIIGSRGVG-KTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             EEEEECcCCCC-HHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            58999999999 9999999999999999999998776 557888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-CCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~  162 (207)
                      |+++++|++++ ..|+..+.... +++|+++||||+|+.+.++          +..++++++++.+ ++ .|++|||++|
T Consensus        81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~-~~~etSAktg  148 (202)
T cd04120          81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGM-RFCEASAKDN  148 (202)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCC-EEEEecCCCC
Confidence            99999999999 78999887765 5899999999999976665          3888999999886 65 8999999999


Q ss_pred             CCHHHHHHHHHHHHhCC
Q 028595          163 QNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~  179 (207)
                      .||+++|+++++.+...
T Consensus       149 ~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         149 FNVDEIFLKLVDDILKK  165 (202)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999988654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=3.6e-37  Score=225.65  Aligned_cols=171  Identities=43%  Similarity=0.730  Sum_probs=149.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||+++|..+.+...|.||++..+...+.+++..+.+.||||+|++++..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vG-KTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVG-KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            699999999999 9999999999999889999999888777788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC--CCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |++++++++.+...|+..+....+++|+++||||+|+.+.......  ....+.+..++++++++..+...|+++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            9999999999955699888876678999999999998654321110  11224578899999999988558999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIKVV  176 (207)
Q Consensus       163 ~~i~~~f~~i~~~~  176 (207)
                      .|++++|+.++...
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-38  Score=212.75  Aligned_cols=167  Identities=28%  Similarity=0.522  Sum_probs=155.2

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +.++|+.++|++.+| ||+|+.++++..|.+.+..|.|..|.. .+....+.+.+++|||+|+|+|+.+...|+++++++
T Consensus        19 DymfKlliiGnssvG-KTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf   97 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVG-KTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   97 (193)
T ss_pred             cceeeEEEEccCCcc-chhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence            357899999999999 999999999999999999999999844 666677899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |++||++|.+|+..+ +.|...|..++ .+.|+++||||+|+..++.+          +.+.++.+++.+|. .|||+||
T Consensus        98 iLmyDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRvi----------s~e~g~~l~~~LGf-efFEtSa  165 (193)
T KOG0093|consen   98 ILMYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERVI----------SHERGRQLADQLGF-EFFETSA  165 (193)
T ss_pred             EEEEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCccceee----------eHHHHHHHHHHhCh-HHhhhcc
Confidence            999999999999999 99999999988 79999999999999888874          99999999999999 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCc
Q 028595          160 KTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +.+.|++++|+.++..+-+...
T Consensus       166 K~NinVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  166 KENINVKQVFERLVDIICDKMS  187 (193)
T ss_pred             cccccHHHHHHHHHHHHHHHhh
Confidence            9999999999999988866543

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=100.00  E-value=4.9e-37  Score=222.67  Aligned_cols=178  Identities=53%  Similarity=0.853  Sum_probs=163.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ...|+++||+..+| ||+|+..+..+.|...|.||+.++|+..+.++ |+.+.+.+|||+||+.|+.+++..|.++|+++
T Consensus         3 ~~~K~VvVGDga~G-KT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVG-KTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcC-ceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            46899999999999 99999999999999999999999999999995 99999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc--cCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +||++.+++|++++...|+.++.+++|++|+++||+|.||.++...+  .......+++.++++.++++.|...|+||||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            99999999999999999999999999999999999999998543221  1233456689999999999999889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCc
Q 028595          160 KTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ++..|+.++|+..++.++.+++
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999998876

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=3.5e-37  Score=228.02  Aligned_cols=185  Identities=42%  Similarity=0.703  Sum_probs=158.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .||+++|.+++| ||||+++|.++.+...+.||++..+...+..+ +..+.+.+|||+|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vG-KTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCG-KTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCC-HHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            489999999999 99999999999999899999988886666665 7789999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  163 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  163 (207)
                      ||+++++|++.+...|+..+....++.|+++||||+|+.+...      ....+..+++++++..++..+++++||++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  153 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTME  153 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence            9999999999996678888877667899999999999865431      1123578899999999987789999999999


Q ss_pred             CHHHHHHHHHHHHhCCCcch-hhhcccCCCeEEe
Q 028595          164 NVKAVFDAAIKVVIKPPQKQ-KEKKKKQRGCLLN  196 (207)
Q Consensus       164 ~i~~~f~~i~~~~~~~~~~~-~~~~~~~~~c~~~  196 (207)
                      |++++|+.+++.+....... ..+++++.+|++|
T Consensus       154 ~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~  187 (187)
T cd04132         154 NVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL  187 (187)
T ss_pred             CHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence            99999999999998766543 3345556777654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=7.4e-37  Score=226.68  Aligned_cols=180  Identities=29%  Similarity=0.443  Sum_probs=156.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||++++.++.+...+.||.+..+...+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         5 ~~Ki~iiG~~~~G-KTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          5 EYKLVVVGGGGVG-KSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            4899999999999 999999999999988999999988888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+ ..|...+....  +++|+++|+||+|+.+.+.          +..+++..+++.++. +++++||++
T Consensus        84 ~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak~  151 (189)
T PTZ00369         84 YSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAKQ  151 (189)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCCC
Confidence            999999999999 78888776543  4789999999999876554          377888999998887 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCC---CcchhhhcccCCCeEEe
Q 028595          162 QQNVKAVFDAAIKVVIKP---PQKQKEKKKKQRGCLLN  196 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~---~~~~~~~~~~~~~c~~~  196 (207)
                      |.|++++|+++++.+.+.   ....+.++++.+-|+++
T Consensus       152 ~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  189 (189)
T PTZ00369        152 RVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL  189 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeeeC
Confidence            999999999999888654   23334445555667764

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.9e-38  Score=213.87  Aligned_cols=165  Identities=25%  Similarity=0.393  Sum_probs=155.9

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+|++++|..+.| ||+|+++|+.+++.++...|+|.+| +..+.++++.++++||||+|||+|++..+.||+++-+.
T Consensus         7 DyLfKfl~iG~aGtG-KSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA   85 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTG-KSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA   85 (214)
T ss_pred             hhhheeEEeccCCCC-hhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            357899999999999 9999999999999999999999999 67899999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||++++++|+.+ ..|+..++... +++-++++|||.|+.+.+++          +..++..|+++..+ .+.|+||
T Consensus        86 lLVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V----------tflEAs~FaqEnel-~flETSa  153 (214)
T KOG0086|consen   86 LLVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPEREV----------TFLEASRFAQENEL-MFLETSA  153 (214)
T ss_pred             EEEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhhh----------hHHHHHhhhcccce-eeeeecc
Confidence            999999999999999 89999998877 68889999999999999885          99999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|+|+++.|-...+.++..
T Consensus       154 ~TGeNVEEaFl~c~~tIl~k  173 (214)
T KOG0086|consen  154 LTGENVEEAFLKCARTILNK  173 (214)
T ss_pred             cccccHHHHHHHHHHHHHHH
Confidence            99999999999999988754

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=6.8e-37  Score=223.58  Aligned_cols=164  Identities=22%  Similarity=0.357  Sum_probs=149.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.++|| ||||++++..+.+...+.||++..+...+.+++..+.+.+|||+|++.++.++..+++++|++|+|
T Consensus         2 ~~ki~vvG~~~vG-KTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVG-KSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCc-HHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            3699999999999 999999999999988899999988877888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++|++.+ ..|...+.+..  +++|+++||||+|+.+.+.          +..++++.+++.+++ +|++|||++
T Consensus        81 ~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~  148 (172)
T cd04141          81 YSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAAL  148 (172)
T ss_pred             EECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCC
Confidence            999999999999 67887776643  5799999999999976655          388899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCC
Q 028595          162 QQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~  180 (207)
                      |.||+++|+++++.+.+..
T Consensus       149 ~~~v~~~f~~l~~~~~~~~  167 (172)
T cd04141         149 RHYIDDAFHGLVREIRRKE  167 (172)
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999999887643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=2.6e-36  Score=220.85  Aligned_cols=170  Identities=52%  Similarity=0.848  Sum_probs=148.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.++|| ||||+.++..+.+...|.||++..+...+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vG-KSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCC-HHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            699999999999 9999999999999999999998888777888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |+++++|++.+...|+..+....++.|+++||||+|+.+.+....  .....+.+..+++++++++++..+|+|+||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            999999999985578888877667899999999999965321100  011224468999999999999669999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIKV  175 (207)
Q Consensus       163 ~~i~~~f~~i~~~  175 (207)
                      .|++++|+.+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3.1e-36  Score=225.39  Aligned_cols=164  Identities=23%  Similarity=0.321  Sum_probs=146.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      +||+++|.+++| ||||+++|+++.+...+.||++.++ ...+.++ +..+.+.+|||+|++.+..+++.+++++|++|+
T Consensus         1 ~KivivG~~~vG-KTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~il   79 (201)
T cd04107           1 LKVLVIGDLGVG-KTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAII   79 (201)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEE
Confidence            589999999999 9999999999999889999999776 4467777 789999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc-----CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595           83 AFSLVSRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  157 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~-----~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (207)
                      |||++++++++.+ ..|+..+...     ..++|++|||||+|+.+.+.          +..++++++++.++..+|+++
T Consensus        80 v~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~  148 (201)
T cd04107          80 VFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFET  148 (201)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEE
Confidence            9999999999999 7888877643     14789999999999975444          378899999999995599999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCCC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ||++|.|++++|+++++.+....
T Consensus       149 Sak~~~~v~e~f~~l~~~l~~~~  171 (201)
T cd04107         149 SAKEGINIEEAMRFLVKNILAND  171 (201)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999987653

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=6.3e-36  Score=217.26  Aligned_cols=162  Identities=23%  Similarity=0.456  Sum_probs=147.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||+++|.++.+...+.+|++.++. ..+.+++..+.+.+|||||++.+..++..+++++|++|+
T Consensus         2 ~~ki~iiG~~~vG-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il   80 (166)
T cd04122           2 IFKYIIIGDMGVG-KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   80 (166)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            4799999999999 99999999999999899999988774 467788989999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||++++++++.+ ..|+..+.... ++.|+++||||+|+.+.+.+          ..++++++++..++ +++++||++
T Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa~~  148 (166)
T cd04122          81 VYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRDV----------TYEEAKQFADENGL-LFLECSAKT  148 (166)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccCc----------CHHHHHHHHHHcCC-EEEEEECCC
Confidence            9999999999999 78988876654 67999999999999876653          78899999999988 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      |.|++++|.++++.+.+
T Consensus       149 ~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         149 GENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.3e-35  Score=221.71  Aligned_cols=164  Identities=29%  Similarity=0.442  Sum_probs=148.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|.++.+...+.||++..+ ...+.+++..+.+.|||+||++.+..++..+++++|+++
T Consensus         5 ~~~kivvvG~~~vG-KTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           5 HLFKLLIIGDSGVG-KSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             ceeEEEEECCCCCC-HHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            35799999999999 9999999999998888999998766 446777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      +|||++++++++.+ ..|+..+....+..|++|||||+|+.+...+          ..+++..+++.++. +++++||++
T Consensus        84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa~~  151 (199)
T cd04110          84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKVV----------ETEDAYKFAGQMGI-SLFETSAKE  151 (199)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEEECCC
Confidence            99999999999999 7899998877788999999999999766553          77889999999887 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028595          162 QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~  179 (207)
                      |.||+++|+++++.++..
T Consensus       152 ~~gi~~lf~~l~~~~~~~  169 (199)
T cd04110         152 NINVEEMFNCITELVLRA  169 (199)
T ss_pred             CcCHHHHHHHHHHHHHHh
Confidence            999999999999999754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=209.53  Aligned_cols=163  Identities=27%  Similarity=0.393  Sum_probs=146.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEE-ECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      ..+++++||++-|| ||+|++.|+.+++..-..||+|.+|-. .+. -+|..+++++|||+|||+++++.+.||+++-++
T Consensus         7 yqfrlivigdstvg-kssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVG-KSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEcCCccc-HHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            35789999999999 999999999999999999999988733 333 378899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCC-cEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS--PGV-PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  157 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~-piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (207)
                      ++|||++|++||+++ ..|..+...+.  |.. -+.+||+|+|+...+++          +.++++.++..+|+ .|+|+
T Consensus        86 llvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV----------t~EEaEklAa~hgM-~FVET  153 (213)
T KOG0091|consen   86 LLVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV----------TAEEAEKLAASHGM-AFVET  153 (213)
T ss_pred             EEEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhccc----------cHHHHHHHHHhcCc-eEEEe
Confidence            999999999999999 89988776544  444 45799999999988885          99999999999999 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ||++|.|+++.|.-+.+.+..
T Consensus       154 Sak~g~NVeEAF~mlaqeIf~  174 (213)
T KOG0091|consen  154 SAKNGCNVEEAFDMLAQEIFQ  174 (213)
T ss_pred             cccCCCcHHHHHHHHHHHHHH
Confidence            999999999999999888763

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=3.8e-35  Score=214.59  Aligned_cols=171  Identities=51%  Similarity=0.842  Sum_probs=149.7

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   86 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   86 (207)
                      |+++|.+++| ||||+++|.++.+...+.||.+..+...+.+++..+.+.+|||+|++.+..++..+++++|++|+|||+
T Consensus         1 i~i~G~~~vG-KTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVG-KTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCC-HHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            5899999999 999999999999998999999888887888899999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCC
Q 028595           87 VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  164 (207)
Q Consensus        87 ~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  164 (207)
                      ++++|++.+...|+..+....++.|+++||||+|+.+......  .......+..++++++++.++..+|+++||++|.|
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            9999999986679999988778999999999999976432110  01112346888999999999976899999999999


Q ss_pred             HHHHHHHHHHHHhC
Q 028595          165 VKAVFDAAIKVVIK  178 (207)
Q Consensus       165 i~~~f~~i~~~~~~  178 (207)
                      ++++|+.+++.+.+
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988765

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=4e-35  Score=212.57  Aligned_cols=160  Identities=26%  Similarity=0.441  Sum_probs=144.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||+++++.+.+...+.||++..+...+.+++..+.+.+|||||++.+.+++..+++++|++++||
T Consensus         2 ~ki~~~G~~~~G-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVG-KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCC-HHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            699999999999 9999999999998888999999888888888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |+++.++++++ ..|+..+....  ++.|+++|+||+|+.+...+          ..++++.+++.+++ +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (164)
T cd04175          81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERVV----------GKEQGQNLARQWGC-AFLETSAKAK  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccEE----------cHHHHHHHHHHhCC-EEEEeeCCCC
Confidence            99999999999 67877775433  68999999999999776553          77778899999997 9999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028595          163 QNVKAVFDAAIKVVI  177 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~  177 (207)
                      .|++++|+++++.+.
T Consensus       149 ~~v~~~~~~l~~~l~  163 (164)
T cd04175         149 INVNEIFYDLVRQIN  163 (164)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=2.5e-35  Score=213.13  Aligned_cols=159  Identities=33%  Similarity=0.645  Sum_probs=148.3

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      ||+++|++++| ||||+++|.++.+...+.||.+.+. ...+.+++..+.+.+||++|++.+..+...+++++|++|+||
T Consensus         1 Ki~vvG~~~vG-Ktsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f   79 (162)
T PF00071_consen    1 KIVVVGDSGVG-KTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF   79 (162)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred             CEEEECCCCCC-HHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999 9999999999999999999996555 678899999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  163 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  163 (207)
                      |+++++|++.+ ..|++.+....+ ++|++|+|||.|+.+.+.          ++.++++++++.++. +|+++||+++.
T Consensus        80 d~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~  147 (162)
T PF00071_consen   80 DVTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGE  147 (162)
T ss_dssp             ETTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTT
T ss_pred             ccccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCC
Confidence            99999999999 799999998886 799999999999988665          488999999999995 99999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 028595          164 NVKAVFDAAIKVVI  177 (207)
Q Consensus       164 ~i~~~f~~i~~~~~  177 (207)
                      |+.++|..+++.+.
T Consensus       148 ~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  148 NVKEIFQELIRKIL  161 (162)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=4.4e-35  Score=211.87  Aligned_cols=159  Identities=26%  Similarity=0.447  Sum_probs=143.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||++++..+.+...+.||.++.+...+.+++..+.+.+|||||++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vG-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVG-KSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCC-HHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            699999999999 9999999999999888999998777778888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |++++++++.+ ..|...+....  ++.|+++|+||+|+.+.+.+          ..+++..+++.++. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd04136          81 SITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERVV----------SREEGQALARQWGC-PFYETSAKSK  148 (163)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccee----------cHHHHHHHHHHcCC-eEEEecCCCC
Confidence            99999999998 78888776543  57999999999999765543          77788889998886 9999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIKVV  176 (207)
Q Consensus       163 ~~i~~~f~~i~~~~  176 (207)
                      .|++++|+++++.+
T Consensus       149 ~~v~~l~~~l~~~~  162 (163)
T cd04136         149 INVDEVFADLVRQI  162 (163)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=5.7e-35  Score=220.70  Aligned_cols=161  Identities=23%  Similarity=0.287  Sum_probs=143.9

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECC-eEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      +||+++|.+++| ||||+++|.++.+...|.||++.++ ...+.+++ ..+.+.||||+|++.+..++..+++++|++|+
T Consensus         1 ~Ki~ivG~~~vG-KSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iil   79 (215)
T cd04109           1 FKIVVLGDGAVG-KTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFL   79 (215)
T ss_pred             CEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEE
Confidence            489999999999 9999999999999999999998665 55677754 57999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      |||++++++++.+ ..|+..+.+..    .++|+++|+||+|+.+.+.          +..++++.+++.+++ +++++|
T Consensus        80 V~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iS  147 (215)
T cd04109          80 VYDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVS  147 (215)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEE
Confidence            9999999999999 78988887654    2578999999999976555          388899999999997 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028595          159 SKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~  178 (207)
                      |++|+|++++|+++++.+..
T Consensus       148 Aktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         148 AKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998864

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=5.6e-35  Score=212.49  Aligned_cols=164  Identities=29%  Similarity=0.472  Sum_probs=148.0

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||++++.++.+...+.||.+.++ ...+..++..+.+.+||++|++.+..++..+++++|++
T Consensus         1 ~~~~ki~vvG~~~~G-KSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~   79 (167)
T cd01867           1 DYLFKLLLIGDSGVG-KSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   79 (167)
T ss_pred             CcceEEEEECCCCCC-HHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence            357899999999999 9999999999999999999998777 44677888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||+++++++..+ ..|+..+.... +++|+++||||+|+.+.+.+          ..+++..+++.++. +++++||
T Consensus        80 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa  147 (167)
T cd01867          80 ILVYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRVV----------SKEEGEALADEYGI-KFLETSA  147 (167)
T ss_pred             EEEEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccCC----------CHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999999 78999887765 57999999999999876553          77889999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      +++.|++++|+++++.+..
T Consensus       148 ~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         148 KANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=7.5e-35  Score=215.77  Aligned_cols=162  Identities=27%  Similarity=0.390  Sum_probs=146.4

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.++|| ||||+++|.++.+...+.||.+.++ ...+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~ki~v~G~~~vG-KSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv   79 (188)
T cd04125           1 FKVVIIGDYGVG-KSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV   79 (188)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence            589999999999 9999999999999888999998777 45678888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ||+++++++..+ ..|+..+.... +.+|++++|||+|+.+...+          ..++++.+++..++ +++++||+++
T Consensus        80 ~d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~evSa~~~  147 (188)
T cd04125          80 YDVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKVV----------DSNIAKSFCDSLNI-PFFETSAKQS  147 (188)
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCcccccC----------CHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            999999999999 77999887765 46899999999999766553          77888999998888 9999999999


Q ss_pred             CCHHHHHHHHHHHHhCC
Q 028595          163 QNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~  179 (207)
                      .|++++|+++++.+..+
T Consensus       148 ~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         148 INVEEAFILLVKLIIKR  164 (188)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999998754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.2e-34  Score=215.21  Aligned_cols=168  Identities=35%  Similarity=0.526  Sum_probs=135.7

Q ss_pred             ceeEEEEecccccceeeeee-eccCC-----CCCccccCcee--eeeeeE--------EEECCeEEEEEEEeCCCCcccc
Q 028595            4 LAKLACLFATQVTSFLLYVL-SVSGR-----SSIWDYIPTVF--DNFSAN--------VVAEGTTVNLGLWDTAGQEDYN   67 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~-~l~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~i~D~~G~~~~~   67 (207)
                      .+||+++|+.+|| ||||+. ++.++     .+...|.||++  +.+...        ..++|..+.+.||||+|++.  
T Consensus         2 ~~Kiv~vG~~~vG-KTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--   78 (195)
T cd01873           2 TIKCVVVGDNAVG-KTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--   78 (195)
T ss_pred             ceEEEEECCCCcC-HHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--
Confidence            3699999999999 999995 55544     34567889986  334332        25789999999999999976  


Q ss_pred             ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc---------ccCCCCCcccC
Q 028595           68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY---------LADHPGLVPVT  138 (207)
Q Consensus        68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~---------~~~~~~~~~v~  138 (207)
                      .+...+++++|++|+|||+++++|++.+...|+..+....++.|+++||||+|+.+....         .......+.+.
T Consensus        79 ~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          79 KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            356778999999999999999999999944699998877778999999999998642110         00011235579


Q ss_pred             HHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          139 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       139 ~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      .++++++++++++ +|+||||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            9999999999998 99999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=9.1e-35  Score=219.10  Aligned_cols=167  Identities=25%  Similarity=0.306  Sum_probs=135.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      .||+++|.+++| ||||+++|..+.+.. +.||++..+....   ...+.+.||||+|++.+..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vG-KTSLi~r~~~~~f~~-~~~Tig~~~~~~~---~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVG-KTSLLHRYMERRFKD-TVSTVGGAFYLKQ---WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCc-HHHHHHHHhcCCCCC-CCCccceEEEEEE---eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            489999999999 999999999999864 6788876553221   14688999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEeeCCCcccCccc---------ccCCCCCcccCHHHHHHHHHHhCC---
Q 028595           85 SLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHY---------LADHPGLVPVTTAQGEELRKQIGA---  151 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~-~~~~piivv~nK~D~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~---  151 (207)
                      |++++++++++ ..|+..+.+. .+++|++|||||+|+.+....         .......+.+..++++.++++.+.   
T Consensus        76 Dvt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~  154 (220)
T cd04126          76 DVSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM  154 (220)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence            99999999999 4554444433 367999999999999752110         001112455789999999999871   


Q ss_pred             ----------cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          152 ----------SYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       152 ----------~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                                .+|+||||++|.||+++|..+++.+.
T Consensus       155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                      37999999999999999999998886

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=9.4e-35  Score=210.15  Aligned_cols=158  Identities=27%  Similarity=0.467  Sum_probs=144.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.+++| ||||+++|.++.+.+.+.||.+..+ ...+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~~G-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (161)
T cd04117           1 FRLLLIGDSGVG-KTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV   79 (161)
T ss_pred             CEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence            489999999999 9999999999999988999998776 45778888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ||+++++|++++ ..|+..+.... .+.|+++||||.|+.+.+.+          ..+++..+++.+++ +|+++||++|
T Consensus        80 ~d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~Sa~~~  147 (161)
T cd04117          80 YDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQV----------GDEQGNKLAKEYGM-DFFETSACTN  147 (161)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccCC----------CHHHHHHHHHHcCC-EEEEEeCCCC
Confidence            999999999999 78998887665 47999999999999776654          78899999999997 9999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIKV  175 (207)
Q Consensus       163 ~~i~~~f~~i~~~  175 (207)
                      .|++++|++|++.
T Consensus       148 ~~v~~~f~~l~~~  160 (161)
T cd04117         148 SNIKESFTRLTEL  160 (161)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1e-34  Score=213.82  Aligned_cols=167  Identities=25%  Similarity=0.411  Sum_probs=142.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|..+|| ||||+++|..+.+...|.||++..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~Ki~vlG~~~vG-KTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv   79 (182)
T cd04128           1 LKIGLLGDAQIG-KTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFM   79 (182)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence            489999999999 9999999999999989999999777 45788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ||++++++++++ ..|+..+.+..+ ..| ++||||+|+......    .... ...++++.+++.++. +++++||++|
T Consensus        80 ~D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~----~~~~-~~~~~~~~~a~~~~~-~~~e~SAk~g  151 (182)
T cd04128          80 FDLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLPP----EEQE-EITKQARKYAKAMKA-PLIFCSTSHS  151 (182)
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhccccccc----hhhh-hhHHHHHHHHHHcCC-EEEEEeCCCC
Confidence            999999999999 889988877553 456 688999999532100    0000 134678889999997 9999999999


Q ss_pred             CCHHHHHHHHHHHHhCCC
Q 028595          163 QNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~~  180 (207)
                      .|++++|+++++.+...+
T Consensus       152 ~~v~~lf~~l~~~l~~~~  169 (182)
T cd04128         152 INVQKIFKIVLAKAFDLP  169 (182)
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence            999999999999887643

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-35  Score=201.73  Aligned_cols=162  Identities=26%  Similarity=0.430  Sum_probs=150.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|+.+|| ||+|+++|+.+-|++....|+|..| .+.+.++|..++++||||+|||+|+++...|++.++++|
T Consensus         6 flfkivlvgnagvg-ktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVG-KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             eeEEEEEEccCCcC-cchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            47999999999999 9999999999999999999999998 568999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++-..||+-+ ..|+.+|+++. ..+--++||||+|+.+.+++          ....+++|++.... .|.|+||+
T Consensus        85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drrev----------p~qigeefs~~qdm-yfletsak  152 (213)
T KOG0095|consen   85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRREV----------PQQIGEEFSEAQDM-YFLETSAK  152 (213)
T ss_pred             EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhhh----------hHHHHHHHHHhhhh-hhhhhccc
Confidence            99999999999999 99999999988 46667999999999988875          88889999998776 88899999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 028595          161 TQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~  177 (207)
                      +-+|++++|..++-.+.
T Consensus       153 ea~nve~lf~~~a~rli  169 (213)
T KOG0095|consen  153 EADNVEKLFLDLACRLI  169 (213)
T ss_pred             chhhHHHHHHHHHHHHH
Confidence            99999999999887765

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.6e-34  Score=209.70  Aligned_cols=160  Identities=29%  Similarity=0.539  Sum_probs=144.4

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.+++| ||||+++|.++++...+.||.+.++. ..+..++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         2 ~ki~i~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v   80 (165)
T cd01865           2 FKLLIIGNSSVG-KTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM   80 (165)
T ss_pred             eEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence            799999999999 99999999999998889999987663 4667788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+..          ..+++.++++.+++ +++++||++|
T Consensus        81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (165)
T cd01865          81 YDITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERVV----------SSERGRQLADQLGF-EFFEASAKEN  148 (165)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCccccc----------CHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999999 78999887765 57999999999999766543          67888899999998 8999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028595          163 QNVKAVFDAAIKVVI  177 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~  177 (207)
                      .|++++|+++++.+.
T Consensus       149 ~gv~~l~~~l~~~~~  163 (165)
T cd01865         149 INVKQVFERLVDIIC  163 (165)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1e-34  Score=213.44  Aligned_cols=163  Identities=31%  Similarity=0.482  Sum_probs=144.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEEC----------CeEEEEEEEeCCCCcccccccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAE----------GTTVNLGLWDTAGQEDYNRLRP   71 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~l~i~D~~G~~~~~~~~~   71 (207)
                      ...||+++|.++|| ||||++++.++.+...+.||++.++. ..+...          +..+.+.||||+|++.+..++.
T Consensus         3 ~~~ki~ivG~~~vG-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           3 YLIKFLALGDSGVG-KTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             ceEEEEEECCCCCC-HHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            46899999999999 99999999999999999999987774 344443          4578999999999999999999


Q ss_pred             ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      .+++++|++++|||+++++|+.++ ..|+..+....  +++|+++||||+|+.+.+.+          ..++++++++.+
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v----------~~~~~~~~~~~~  150 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQV----------SEEQAKALADKY  150 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCcc----------CHHHHHHHHHHc
Confidence            999999999999999999999999 78998887653  57999999999999776553          778899999999


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++ +++++||++|.|++++|+++++.+++
T Consensus       151 ~~-~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         151 GI-PYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            98 99999999999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=2e-34  Score=213.99  Aligned_cols=162  Identities=29%  Similarity=0.512  Sum_probs=144.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      +||+++|.+++| ||||+++|.++.+. ..+.+|.+..+.. .+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus         1 ~Ki~vvG~~~vG-KTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~   79 (191)
T cd04112           1 FKVMLLGDSGVG-KTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL   79 (191)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence            489999999999 99999999999875 4678888877643 67788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||++++++++++ ..|+..+.... .++|+++|+||+|+...+.+          ..++++.+++.++. +|+++||++
T Consensus        80 v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~----------~~~~~~~l~~~~~~-~~~e~Sa~~  147 (191)
T cd04112          80 LYDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERVV----------KREDGERLAKEYGV-PFMETSAKT  147 (191)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhcccc----------CHHHHHHHHHHcCC-eEEEEeCCC
Confidence            9999999999999 78988887766 47999999999999765543          77889999999997 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028595          162 QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~  179 (207)
                      |.|++++|+++++.+...
T Consensus       148 ~~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         148 GLNVELAFTAVAKELKHR  165 (191)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999999865

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.5e-34  Score=217.46  Aligned_cols=162  Identities=23%  Similarity=0.322  Sum_probs=143.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.++|| ||||+++++.+.+...+.||++..+ ...+..++..+.+.+|||+|++.+..++..+++++|++|
T Consensus        12 ~~~Ki~vvG~~gvG-KTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         12 PSFKLVIVGDGGTG-KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CceEEEEECcCCCC-HHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            35799999999999 9999999999999889999998766 446777788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      +|||++++++++.+ ..|+..+.+..++.|+++||||+|+....           +..+++ .+++..++ +|+++||++
T Consensus        91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~  156 (219)
T PLN03071         91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS  156 (219)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence            99999999999999 88999998777889999999999986432           244455 67777777 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028595          162 QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~  179 (207)
                      |.|++++|+++++.+.+.
T Consensus       157 ~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        157 NYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCHHHHHHHHHHHHHcC
Confidence            999999999999998754

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=3.8e-34  Score=207.82  Aligned_cols=161  Identities=28%  Similarity=0.510  Sum_probs=146.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||++++.++.+...+.+|.+.++ ...+.+++..+.+++||+||++++..++..+++++|++++
T Consensus         2 ~~ki~i~G~~~vG-KSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~   80 (166)
T cd01869           2 LFKLLLIGDSGVG-KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII   80 (166)
T ss_pred             eEEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence            4799999999999 9999999999998888889988776 4567788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||+++++++..+ ..|+..+.... ++.|+++++||+|+.+...+          ..+++..+++.++. +++++||++
T Consensus        81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~  148 (166)
T cd01869          81 VYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRVV----------DYSEAQEFADELGI-PFLETSAKN  148 (166)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccCC----------CHHHHHHHHHHcCC-eEEEEECCC
Confidence            9999999999999 78998887766 67999999999998766543          78889999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028595          162 QQNVKAVFDAAIKVVI  177 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~  177 (207)
                      |.|++++|.++++.+.
T Consensus       149 ~~~v~~~~~~i~~~~~  164 (166)
T cd01869         149 ATNVEQAFMTMAREIK  164 (166)
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999998875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.4e-35  Score=203.91  Aligned_cols=164  Identities=28%  Similarity=0.496  Sum_probs=152.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+|++++|..-|| ||+|+-+|+.++|......|....| .+.+.+.+....+.||||+|||+|..+.+.||+++++++
T Consensus        12 ~~FK~VLLGEGCVG-KtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVG-KTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             eeeEEEEEcCCccc-hhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            46899999999999 9999999999999998888887777 668999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++|++||+.+ +.|..++.... ..+-++|||||+|+.+.+.+          +..+++.+++..|. .|+++||+
T Consensus        91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V----------t~qeAe~YAesvGA-~y~eTSAk  158 (218)
T KOG0088|consen   91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQV----------TRQEAEAYAESVGA-LYMETSAK  158 (218)
T ss_pred             EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhhh----------hHHHHHHHHHhhch-hheecccc
Confidence            99999999999999 89999998766 57889999999999999885          99999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++.||.++|..+....+++
T Consensus       159 ~N~Gi~elFe~Lt~~MiE~  177 (218)
T KOG0088|consen  159 DNVGISELFESLTAKMIEH  177 (218)
T ss_pred             cccCHHHHHHHHHHHHHHH
Confidence            9999999999998887754

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=8.5e-34  Score=207.44  Aligned_cols=172  Identities=45%  Similarity=0.765  Sum_probs=148.9

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||+++|..+.+...+.||.++.+...+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~G-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVG-KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            489999999999 9999999999999888999998887778888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc--cCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |++++++++.+...|...+....++.|++++|||+|+.+.....  ......+.+..++++.+++.++..+|+++||++|
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  159 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence            99999999998667888887666789999999999986543210  0111123467889999999999778999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028595          163 QNVKAVFDAAIKVVI  177 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~  177 (207)
                      .|++++|+.+++.++
T Consensus       160 ~gi~~~f~~~~~~~~  174 (174)
T cd04135         160 KGLKTVFDEAILAIL  174 (174)
T ss_pred             CCHHHHHHHHHHHhC
Confidence            999999999998763

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=4.5e-34  Score=206.79  Aligned_cols=160  Identities=24%  Similarity=0.442  Sum_probs=143.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||++++..+.+...+.||.+..+...+.+++..+.+.||||+|++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vG-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVG-KSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            3699999999999 999999999999988889998877777888899899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++.++ ..|...+....  .++|+++|+||+|+.+.+.          +..+++..+++.++. +++++||++
T Consensus        80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  147 (163)
T cd04176          80 YSLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKS  147 (163)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCC
Confidence            999999999999 77877776543  5899999999999976544          366778899888887 999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKVV  176 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~  176 (207)
                      +.|++++|.++++.+
T Consensus       148 ~~~v~~l~~~l~~~l  162 (163)
T cd04176         148 KTMVNELFAEIVRQM  162 (163)
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=7e-34  Score=206.55  Aligned_cols=161  Identities=24%  Similarity=0.385  Sum_probs=140.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.++|| ||||+++++.+.+...+.||.+.++ ...+..++..+.+.+|||+|++.+..++..++..+|++|+|
T Consensus         1 ~ki~vvG~~~vG-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (166)
T cd00877           1 FKLVLVGDGGTG-KTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM   79 (166)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence            589999999999 9999999999988888999998766 44566678889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  163 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  163 (207)
                      ||+++++++..+ ..|+..+....+++|+++||||+|+.+..            ...+..++++..++ +++++||++|.
T Consensus        80 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~------------~~~~~~~~~~~~~~-~~~e~Sa~~~~  145 (166)
T cd00877          80 FDVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK------------VKAKQITFHRKKNL-QYYEISAKSNY  145 (166)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc------------CCHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            999999999999 78999998877789999999999997332            22344567776666 89999999999


Q ss_pred             CHHHHHHHHHHHHhCCC
Q 028595          164 NVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       164 ~i~~~f~~i~~~~~~~~  180 (207)
                      |++++|+++++.+.+.+
T Consensus       146 ~v~~~f~~l~~~~~~~~  162 (166)
T cd00877         146 NFEKPFLWLARKLLGNP  162 (166)
T ss_pred             ChHHHHHHHHHHHHhcc
Confidence            99999999999987643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=4.5e-34  Score=207.28  Aligned_cols=161  Identities=20%  Similarity=0.386  Sum_probs=144.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.+++| ||||+++|+++++...+.||++..+ ...+.+++..+.+++|||+|++.+..++..+++++|++|+|
T Consensus         1 ~ki~~vG~~~vG-KTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (168)
T cd04119           1 IKVISMGNSGVG-KSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV   79 (168)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence            489999999999 9999999999999999999998777 55788889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC------CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  157 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (207)
                      ||++++++++.+ ..|+..+....      .+.|+++|+||+|+.+...          +..++++.+++..+. +++++
T Consensus        80 ~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~  147 (168)
T cd04119          80 YDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFET  147 (168)
T ss_pred             EECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEE
Confidence            999999999998 78988887654      3689999999999975444          378888899999887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ||++|.|++++|+++++.+++
T Consensus       148 Sa~~~~gi~~l~~~l~~~l~~  168 (168)
T cd04119         148 SACTGEGVNEMFQTLFSSIVD  168 (168)
T ss_pred             ECCCCCCHHHHHHHHHHHHhC
Confidence            999999999999999988763

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=6.8e-34  Score=205.17  Aligned_cols=159  Identities=33%  Similarity=0.499  Sum_probs=142.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.||.++.+...+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         1 ~~ki~iiG~~~vG-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVG-KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            3699999999999 999999999999988999999888877888899889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++.+++.+ ..|...+.+..  ++.|+++|+||+|+.+..           +..+++.++++.++. +++++||++
T Consensus        80 ~~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  146 (162)
T cd04138          80 FAINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKT  146 (162)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCC
Confidence            999999999998 67777776543  579999999999987632           367788899988888 999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKVV  176 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~  176 (207)
                      |.|++++|+++++.+
T Consensus       147 ~~gi~~l~~~l~~~~  161 (162)
T cd04138         147 RQGVEEAFYTLVREI  161 (162)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-35  Score=201.33  Aligned_cols=165  Identities=31%  Similarity=0.456  Sum_probs=149.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEEC---------CeEEEEEEEeCCCCccccccccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAE---------GTTVNLGLWDTAGQEDYNRLRPL   72 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~---------~~~~~l~i~D~~G~~~~~~~~~~   72 (207)
                      ..+|.+.+|+++|| ||+++++++.++|....+.|+|.+|. +.+..+         +..+.+++|||+|||+|+++...
T Consensus         8 ylikfLaLGDSGVG-KTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    8 YLIKFLALGDSGVG-KTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHhhccCCCC-ceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            35788999999999 99999999999999999999999984 455442         35799999999999999999999


Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      ++++|-+++++||+++..||.++ ..|+..++.+  +.++.++++|||+|+.+.+.+          ..+++.++++++|
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V----------s~~qa~~La~kyg  155 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV----------SEDQAAALADKYG  155 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhhh----------hHHHHHHHHHHhC
Confidence            99999999999999999999999 8999988654  478899999999999888875          9999999999999


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      + ||||+||-+|.||++..+-++..++++.
T Consensus       156 l-PYfETSA~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  156 L-PYFETSACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             C-CeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence            9 9999999999999999999988887653

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=1.4e-33  Score=206.30  Aligned_cols=169  Identities=43%  Similarity=0.716  Sum_probs=145.9

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +|++++|.+++| ||||++++.++.+...+.||..+.+...+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~G-Ktsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVG-KTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999 9999999999999999999988877778888998999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |++++++++.+...|+..+....++.|++++|||+|+.+......  .....+.+..++++.+++..+..+|+++||++|
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~  159 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ  159 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            999999999985578888876657899999999999865321100  001223468889999999998778999999999


Q ss_pred             CCHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIK  174 (207)
Q Consensus       163 ~~i~~~f~~i~~  174 (207)
                      .|++++|+.++.
T Consensus       160 ~~v~~lf~~~~~  171 (173)
T cd04130         160 KNLKEVFDTAIL  171 (173)
T ss_pred             CCHHHHHHHHHh
Confidence            999999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=8e-34  Score=205.62  Aligned_cols=160  Identities=30%  Similarity=0.480  Sum_probs=143.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||+++++++.+...+.||.++.+.....+++..+.+.+|||||++++..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~~G-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVG-KSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            489999999999 9999999999999888899998877778888898999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |++++++++.+ ..|...+.+..  .+.|+++|+||+|+.+.+..          ..++++.+++.++. +++++||++|
T Consensus        80 d~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (164)
T smart00173       80 SITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERVV----------STEEGKELARQWGC-PFLETSAKER  147 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccceE----------cHHHHHHHHHHcCC-EEEEeecCCC
Confidence            99999999999 77777665433  47899999999999765543          77888899999886 9999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028595          163 QNVKAVFDAAIKVVI  177 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~  177 (207)
                      .|++++|+++++.+.
T Consensus       148 ~~i~~l~~~l~~~~~  162 (164)
T smart00173      148 VNVDEAFYDLVREIR  162 (164)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=7.1e-34  Score=205.43  Aligned_cols=158  Identities=28%  Similarity=0.411  Sum_probs=143.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEEC--CeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAE--GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      .||+++|.+++| ||||+++++++.+...+.||++.++ ...+.++  +..+.+.+|||||++.+..++..+++++|+++
T Consensus         1 ~kv~~vG~~~~G-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v   79 (162)
T cd04106           1 IKVIVVGNGNVG-KSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACI   79 (162)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEE
Confidence            489999999999 9999999999999888999998777 4466666  77899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      +|||++++++++.+ ..|+..+....+++|+++|+||.|+.....+          ..++++.+++.+++ +++++||++
T Consensus        80 ~v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~~  147 (162)
T cd04106          80 LVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAVI----------TNEEAEALAKRLQL-PLFRTSVKD  147 (162)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccCC----------CHHHHHHHHHHcCC-eEEEEECCC
Confidence            99999999999998 7899888776778999999999999776553          77889999999998 999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKV  175 (207)
Q Consensus       162 ~~~i~~~f~~i~~~  175 (207)
                      +.|++++|+++...
T Consensus       148 ~~~v~~l~~~l~~~  161 (162)
T cd04106         148 DFNVTELFEYLAEK  161 (162)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1e-33  Score=206.38  Aligned_cols=163  Identities=26%  Similarity=0.393  Sum_probs=142.9

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .||+++|.+++| ||||+++|.++.+...|.||++..+ ...+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         1 ~ki~ivG~~~vG-KTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv   79 (170)
T cd04108           1 SKVIVVGDLSVG-KTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV   79 (170)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence            389999999999 9999999999999999999999877 45778889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-C-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-P-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++..+ ..|+..+.+.. + +.|+++|+||+|+.+....        .+..++++.+++.++. +|+++||++
T Consensus        80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~--------~~~~~~~~~~~~~~~~-~~~e~Sa~~  149 (170)
T cd04108          80 FDLTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQY--------ALMEQDAIKLAAEMQA-EYWSVSALS  149 (170)
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCccccc--------cccHHHHHHHHHHcCC-eEEEEECCC
Confidence            999999999999 78998875433 3 5789999999998654321        1246778889888887 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      |.|++++|+.+++.+.+
T Consensus       150 g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         150 GENVREFFFRVAALTFE  166 (170)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.9e-33  Score=209.00  Aligned_cols=166  Identities=30%  Similarity=0.431  Sum_probs=145.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCc-cccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .||+++|.+++| ||||+++|+++++.. .|.+|++..+ ...+.+++..+.+.+||++|++++..++..++.++|++++
T Consensus         1 ~ki~vvG~~~vG-KSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil   79 (193)
T cd04118           1 VKVVMLGKESVG-KTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV   79 (193)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence            489999999999 999999999999874 6889998877 4578889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |||++++++++.+ ..|+..+....++.|+++|+||+|+.+...      ....+..++++.++..++. +++++||+++
T Consensus        80 v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~  151 (193)
T cd04118          80 CYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTG  151 (193)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            9999999999998 789998877667899999999999864321      1123466788899988887 8999999999


Q ss_pred             CCHHHHHHHHHHHHhCC
Q 028595          163 QNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~  179 (207)
                      .|++++|+++++.+.+.
T Consensus       152 ~gv~~l~~~i~~~~~~~  168 (193)
T cd04118         152 QNVDELFQKVAEDFVSR  168 (193)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999988654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1e-33  Score=205.41  Aligned_cols=158  Identities=23%  Similarity=0.365  Sum_probs=140.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||+++++++.+...+.||.+..+...+..++..+.+.+|||+|++++..++..+++++|++++||
T Consensus         2 ~kv~~vG~~~vG-KTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVG-KSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCC-HHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            689999999999 9999999999999888999998877777777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |++++++++.+ ..|+..+....    +++|+++|+||+|+.+.+.+          ..+++..++..+++ +|+++||+
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~SA~  148 (165)
T cd04140          81 SVTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKREV----------SSNEGAACATEWNC-AFMETSAK  148 (165)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCee----------cHHHHHHHHHHhCC-cEEEeecC
Confidence            99999999998 77877765532    57999999999999765543          77888889988887 89999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028595          161 TQQNVKAVFDAAIKV  175 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~  175 (207)
                      +|.|++++|++++..
T Consensus       149 ~g~~v~~~f~~l~~~  163 (165)
T cd04140         149 TNHNVQELFQELLNL  163 (165)
T ss_pred             CCCCHHHHHHHHHhc
Confidence            999999999999753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.9e-33  Score=203.33  Aligned_cols=159  Identities=26%  Similarity=0.383  Sum_probs=139.9

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.+++| ||||++++.++.+.+.+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vG-KTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (161)
T cd04124           1 VKIILLGDSAVG-KSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILV   79 (161)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence            489999999999 9999999999998888888876554 45677788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  163 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  163 (207)
                      ||++++.+++.+ ..|+..+.+..++.|+++|+||+|+.+.             ..++...+++..++ +++++||++|.
T Consensus        80 ~d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~  144 (161)
T cd04124          80 FDVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGT  144 (161)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            999999999998 7899999877678999999999998432             23456677777777 89999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 028595          164 NVKAVFDAAIKVVIKP  179 (207)
Q Consensus       164 ~i~~~f~~i~~~~~~~  179 (207)
                      |++++|+.+++.+...
T Consensus       145 gv~~l~~~l~~~~~~~  160 (161)
T cd04124         145 NVVKLFQDAIKLAVSY  160 (161)
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999888765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.7e-33  Score=212.69  Aligned_cols=164  Identities=24%  Similarity=0.431  Sum_probs=148.5

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.++|| ||||+++|.++.+...+.+|++.++ ...+.+++..+.+.|||++|++++..++..++++++++
T Consensus        10 ~~~~Ki~ivG~~~vG-KStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110         10 DYLFKIVLIGDSGVG-KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             CceeEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            356899999999999 9999999999998888899999887 55788899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||++++++++.+ ..|+..+.... .++|+++|+||+|+.+.+.+          ..++++.++..+++ +++++||
T Consensus        89 ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~----------~~~~~~~l~~~~~~-~~~e~SA  156 (216)
T PLN03110         89 LLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRSV----------AEEDGQALAEKEGL-SFLETSA  156 (216)
T ss_pred             EEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccCC----------CHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78998887765 47999999999999766553          77889999998887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++|.|++++|++++..+..
T Consensus       157 ~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        157 LEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988853

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=2.2e-33  Score=204.34  Aligned_cols=164  Identities=26%  Similarity=0.432  Sum_probs=146.8

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||++++.++++...+.+|.+.++ ...+.+++..+.+.+||++|++++..+...+++++|++
T Consensus         2 ~~~~ki~vvG~~~vG-KSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           2 AYLFKYIIIGDTGVG-KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             CcceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            456899999999999 9999999999998888888888776 45677888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||++++++++.+ ..|+..+.... ++.|+++|+||.|+.+...          +..++++.++..++. +++++||
T Consensus        81 l~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa  148 (168)
T cd01866          81 LLVYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSA  148 (168)
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999999 78998887654 6899999999999976544          378889999999987 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++++|++++|.++++.+.+
T Consensus       149 ~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         149 KTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=5.5e-33  Score=205.61  Aligned_cols=176  Identities=39%  Similarity=0.594  Sum_probs=149.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +.||+++|.+++| ||||+++|..+.+.+.+.+|.+..+...+.+++..+.+.+||++|++.+......+++++|+++++
T Consensus         1 ~~Ki~ivG~~g~G-KStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACG-KTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            4699999999999 999999999888888888888887777778888889999999999999888887888999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  163 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  163 (207)
                      ||+++.++++.+...|+..+....+++|+++||||+|+.+...........+.+..++++.+++.++..+|+++||++|.
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            99999999999966799999877778999999999998643221111112233567889999999997689999999999


Q ss_pred             CHHHHHHHHHHHHhCCC
Q 028595          164 NVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       164 ~i~~~f~~i~~~~~~~~  180 (207)
                      |++++|+++++.++.-+
T Consensus       160 ~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         160 GVDDVFEAATRAALLVR  176 (187)
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999998887665

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.1e-34  Score=192.96  Aligned_cols=159  Identities=28%  Similarity=0.469  Sum_probs=145.7

Q ss_pred             EEEecccccceeeeeeeccCCCCC-ccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595            8 ACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   85 (207)
Q Consensus         8 ~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   85 (207)
                      +++|++.+| ||+|+-+|..+.|. ...++|+|.+|. +-+.++++.+++++|||+|||+|++....|++++|+.+++||
T Consensus         1 mllgds~~g-ktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllyd   79 (192)
T KOG0083|consen    1 MLLGDSCTG-KTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYD   79 (192)
T ss_pred             CccccCccC-ceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeee
Confidence            368999999 99999999988874 457789999884 477889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCC
Q 028595           86 LVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  164 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  164 (207)
                      +.|+.||+++ ..|+.+|.++. ..+.+.++|||+|+.+++.+          ..++++++++.+++ ||+|+||++|.|
T Consensus        80 iankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~v----------~~ddg~kla~~y~i-pfmetsaktg~n  147 (192)
T KOG0083|consen   80 IANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERAV----------KRDDGEKLAEAYGI-PFMETSAKTGFN  147 (192)
T ss_pred             cccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhcc----------ccchHHHHHHHHCC-Cceecccccccc
Confidence            9999999999 99999999987 57888999999999888775          88999999999999 999999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 028595          165 VKAVFDAAIKVVIKP  179 (207)
Q Consensus       165 i~~~f~~i~~~~~~~  179 (207)
                      ++-.|..|.+.+.+.
T Consensus       148 vd~af~~ia~~l~k~  162 (192)
T KOG0083|consen  148 VDLAFLAIAEELKKL  162 (192)
T ss_pred             HhHHHHHHHHHHHHh
Confidence            999999999888643

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.9e-33  Score=204.00  Aligned_cols=161  Identities=28%  Similarity=0.405  Sum_probs=144.2

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||++++..+.+...+.+|.+.++ ...+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus         2 ~~~kv~vvG~~~~G-KTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           2 FLFKIILIGDSNVG-KTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             ceeEEEEECCCCCC-HHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            46899999999999 9999999999998888888887666 456778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..+++..+++.++...++++||+
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~e~Sa~  149 (165)
T cd01864          81 IAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQREV----------LFEEACTLAEKNGMLAVLETSAK  149 (165)
T ss_pred             EEEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECccccccccc----------CHHHHHHHHHHcCCcEEEEEECC
Confidence            99999999999998 78999887654 58999999999999776553          77889999999887688999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028595          161 TQQNVKAVFDAAIKV  175 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~  175 (207)
                      +|.|++++|+++++.
T Consensus       150 ~~~~v~~~~~~l~~~  164 (165)
T cd01864         150 ESQNVEEAFLLMATE  164 (165)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.8e-33  Score=209.49  Aligned_cols=155  Identities=21%  Similarity=0.346  Sum_probs=137.9

Q ss_pred             EecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCC
Q 028595           10 LFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS   88 (207)
Q Consensus        10 iG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~   88 (207)
                      +|.++|| ||||+++|+.+.+...|.||++.++ ...+.+++..+.+.||||+|++++..++..|++++|++|+|||+++
T Consensus         1 vG~~~vG-KTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~   79 (200)
T smart00176        1 VGDGGTG-KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA   79 (200)
T ss_pred             CCCCCCC-HHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence            6999999 9999999999998888999998777 5577888899999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHH
Q 028595           89 RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV  168 (207)
Q Consensus        89 ~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  168 (207)
                      ++|+..+ ..|+..+.+..+++|+++||||+|+... .          +..+. ..+++..++ +|++|||++|.||+++
T Consensus        80 ~~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~-~----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~  145 (200)
T smart00176       80 RVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDR-K----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKP  145 (200)
T ss_pred             hHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccc-c----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence            9999999 7899999887788999999999998543 2          24333 467888887 8999999999999999


Q ss_pred             HHHHHHHHhCC
Q 028595          169 FDAAIKVVIKP  179 (207)
Q Consensus       169 f~~i~~~~~~~  179 (207)
                      |+++++.+...
T Consensus       146 F~~l~~~i~~~  156 (200)
T smart00176      146 FLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHhc
Confidence            99999988754

Ran is involved in the active transport of proteins through nuclear pores.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.7e-33  Score=203.06  Aligned_cols=161  Identities=26%  Similarity=0.439  Sum_probs=144.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ...||+++|.+++| ||||++++.++.+...+.||.+.++ ...+..++..+.+.+||+||++++..++..+++++++++
T Consensus         2 ~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           2 YLFKIVLIGDSGVG-KSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             CceEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            35799999999999 9999999999998888889998777 557888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||+++++++.++ ..|+..+.+..+ ++|+++|+||+|+...+..          ..++.+.+++..+. +++++||+
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~  148 (165)
T cd01868          81 LVYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAV----------PTEEAKAFAEKNGL-SFIETSAL  148 (165)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccccC----------CHHHHHHHHHHcCC-EEEEEECC
Confidence            99999999999999 789998877664 6999999999999766553          77889999998887 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028595          161 TQQNVKAVFDAAIKVV  176 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~  176 (207)
                      +|.|++++|++++..+
T Consensus       149 ~~~~v~~l~~~l~~~i  164 (165)
T cd01868         149 DGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.9e-33  Score=211.65  Aligned_cols=163  Identities=28%  Similarity=0.411  Sum_probs=144.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEE-CCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      .+||+++|.++|| ||||+++|+++.+...+.||++.++ ...+.+ ++..+.+++|||+|++.+..++..+++++|+++
T Consensus         2 ~~KIvvvG~~~vG-KTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           2 QFRLIVIGDSTVG-KSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            5799999999999 9999999999998888889988666 445655 567899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +|||++++++++++ ..|+..+....  ..+|++|||||+|+.+.+.+          ..++++.+++.++. +|+++||
T Consensus        81 lv~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~Sa  148 (211)
T cd04111          81 LVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQV----------TREEAEKLAKDLGM-KYIETSA  148 (211)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEcccccccccc----------CHHHHHHHHHHhCC-EEEEEeC
Confidence            99999999999999 78988886554  35788999999999776553          88889999999996 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|.|++++|++|++.+.+.
T Consensus       149 k~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         149 RTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988754

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=4.9e-33  Score=203.56  Aligned_cols=172  Identities=41%  Similarity=0.720  Sum_probs=147.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +.||+++|.+++| ||||+++|.++.+...+.||.+..+...+.+++..+.+.+|||+|++.+..++..++.++|++++|
T Consensus         1 ~~ki~iiG~~~~G-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           1 RKKLVIVGDGACG-KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            4699999999999 999999999999988899999888777778889999999999999999999988999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC--CCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+...|...+.+..++.|+++|+||+|+.+......+  ......+...+++++++.++..+++++||++
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            99999999999866788888776678999999999998654321110  0012235678899999998876899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKVV  176 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~  176 (207)
                      |.|++++|+++++.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.9e-33  Score=203.89  Aligned_cols=160  Identities=29%  Similarity=0.452  Sum_probs=141.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ...||+++|.+++| ||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.|||+||++++..++..+++++|+++
T Consensus         4 ~~~ki~vvG~~~~G-KTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           4 SLLKVILLGDGGVG-KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             eEEEEEEECCCCCC-HHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            46899999999999 9999999999999888888988776 457788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  156 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  156 (207)
                      +|||++++++++.+ ..|...+....     +++|+++|+||+|+.+ +.          +..++++++++.++..++++
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~~~~~e  150 (170)
T cd04116          83 LTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQ----------VSTEEAQAWCRENGDYPYFE  150 (170)
T ss_pred             EEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccc-cc----------cCHHHHHHHHHHCCCCeEEE
Confidence            99999999999998 78887665432     4689999999999863 22          37789999999998668999


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +||++|.|+.++|+.+++.
T Consensus       151 ~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         151 TSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            9999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=2.9e-33  Score=202.54  Aligned_cols=160  Identities=29%  Similarity=0.476  Sum_probs=143.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++++++.+...+.||.+..+.....+++..+.+.+|||||++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~G-Ktsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVG-KSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCc-HHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4799999999999 999999999998888889999887777778899899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++.++++.+ ..|...+....  .+.|+++++||+|+...+.          +..+++.++++.++. +++++||++
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (164)
T cd04145          81 FSVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKD  148 (164)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCC
Confidence            999999999999 77877776542  5799999999999976554          377788999998887 999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKVV  176 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~  176 (207)
                      |.|++++|+++++.+
T Consensus       149 ~~~i~~l~~~l~~~~  163 (164)
T cd04145         149 RLNVDKAFHDLVRVI  163 (164)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=9.8e-33  Score=204.15  Aligned_cols=163  Identities=29%  Similarity=0.476  Sum_probs=152.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|..+|| ||+|..+|..+.|...|.||+++.|.+.+.+++..+.+.|+||+|++.+..+...++.++|++++|
T Consensus         3 ~~kvvvlG~~gVG-KSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    3 EYKVVVLGAGGVG-KSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             ceEEEEECCCCCC-cchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            5799999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |+++++.||+.+ ..+...|.+..  ..+|+++||||+|+...+.+          ..++++.++..+++ +|+|+||+.
T Consensus        82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V----------~~eeg~~la~~~~~-~f~E~Sak~  149 (196)
T KOG0395|consen   82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQV----------SEEEGKALARSWGC-AFIETSAKL  149 (196)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhcccc----------CHHHHHHHHHhcCC-cEEEeeccC
Confidence            999999999999 77877774322  46899999999999888775          99999999999999 699999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028595          162 QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~  179 (207)
                      +.+++++|..+++.+-..
T Consensus       150 ~~~v~~~F~~L~r~~~~~  167 (196)
T KOG0395|consen  150 NYNVDEVFYELVREIRLP  167 (196)
T ss_pred             CcCHHHHHHHHHHHHHhh
Confidence            999999999999988763

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=4.4e-33  Score=200.65  Aligned_cols=155  Identities=24%  Similarity=0.273  Sum_probs=131.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      .||+++|..++| ||||++++..+.+...+.|+ +..+...+.++|..+.+.+|||+|++.     ..+++++|++++||
T Consensus         1 ~ki~vvG~~gvG-KTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSG-KSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCc-HHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            489999999999 99999999999887777665 455667788999999999999999975     35678899999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |+++++||+++ ..|+..+....  +++|+++||||.|+....        .+.+..++++++++..+...|+||||++|
T Consensus        74 d~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  144 (158)
T cd04103          74 SLENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYG  144 (158)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCC
Confidence            99999999999 67988887654  579999999999985321        12258889999998875339999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIKV  175 (207)
Q Consensus       163 ~~i~~~f~~i~~~  175 (207)
                      .||+++|+.+++.
T Consensus       145 ~~i~~~f~~~~~~  157 (158)
T cd04103         145 LNVERVFQEAAQK  157 (158)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=5.6e-33  Score=200.65  Aligned_cols=158  Identities=26%  Similarity=0.415  Sum_probs=142.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .||+++|.+++| ||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         1 ~ki~v~G~~~vG-KTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v   79 (161)
T cd04113           1 FKFIIIGSSGTG-KSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   79 (161)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence            489999999999 9999999999998888888888766 45677888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ||+++++++..+ ..|+..+.... ++.|+++++||+|+.+.+.          +..+++..+++.++. +++++||+++
T Consensus        80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (161)
T cd04113          80 YDITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTG  147 (161)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999999 78988876554 6899999999999976554          388899999999996 9999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIKV  175 (207)
Q Consensus       163 ~~i~~~f~~i~~~  175 (207)
                      .|++++|+++++.
T Consensus       148 ~~i~~~~~~~~~~  160 (161)
T cd04113         148 ENVEEAFLKCARS  160 (161)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=1.1e-32  Score=211.54  Aligned_cols=163  Identities=27%  Similarity=0.349  Sum_probs=141.9

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||+++|+++.+...|.||+++.+...+.+++..+.+.||||+|++.+..++..++.++|++|+||
T Consensus         1 ~KVvvlG~~gvG-KTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVG-KTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            489999999999 9999999999999888999998777778888999999999999999999988888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc----------CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           85 SLVSRASYENVLKKWIPELQHY----------SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~----------~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      |+++++||+++ ..|+..+...          ..+.|+++|+||+|+...+.          +..+++.+++.......+
T Consensus        80 dv~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~  148 (247)
T cd04143          80 SLDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAY  148 (247)
T ss_pred             eCCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEE
Confidence            99999999999 7887777542          24799999999999976544          377788888765433389


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++||++|.|++++|+++++.+..+
T Consensus       149 ~evSAktg~gI~elf~~L~~~~~~p  173 (247)
T cd04143         149 FEVSAKKNSNLDEMFRALFSLAKLP  173 (247)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhccc
Confidence            9999999999999999999877543

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=207.42  Aligned_cols=163  Identities=25%  Similarity=0.421  Sum_probs=146.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.||++.++ ...+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus         6 ~~kivivG~~gvG-KStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          6 LFKYIIIGDTGVG-KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            5899999999999 9999999999998888889998777 4577888989999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||++++++++.+ ..|+..+.... +..|+++++||+|+.+.+.+          ..++++++++.+++ +|+++||++
T Consensus        85 v~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa~~  152 (210)
T PLN03108         85 VYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRAV----------STEEGEQFAKEHGL-IFMEASAKT  152 (210)
T ss_pred             EEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccCC----------CHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 78887776544 58999999999999776553          88899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028595          162 QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~  179 (207)
                      +.|++++|+++++.+.+.
T Consensus       153 ~~~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        153 AQNVEEAFIKTAAKIYKK  170 (210)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999888753

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=1.1e-32  Score=200.92  Aligned_cols=163  Identities=20%  Similarity=0.187  Sum_probs=141.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      .+||+++|.++|| ||||+++|+++.+. ..|.||++..+. ..+.+++..+.+.+||++|++.+..++..++.++|+++
T Consensus         4 ~~kv~~vG~~~vG-KTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           4 VFLCFVLGAKGSG-KSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             EEEEEEECCCCCc-HHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4799999999999 99999999999998 889999998874 46778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      +|||++++++++.+ ..|+..+... +++|+++|+||+|+.+....          ...+++++++.++...++++||++
T Consensus        83 lv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~Sa~~  150 (169)
T cd01892          83 LVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQR----------YEVQPDEFCRKLGLPPPLHFSSKL  150 (169)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEcccccccccc----------cccCHHHHHHHcCCCCCEEEEecc
Confidence            99999999999988 6777765332 47999999999999655432          345667888888875579999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028595          162 QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~  179 (207)
                      +.|++++|+.+++.+..+
T Consensus       151 ~~~v~~lf~~l~~~~~~~  168 (169)
T cd01892         151 GDSSNELFTKLATAAQYP  168 (169)
T ss_pred             CccHHHHHHHHHHHhhCC
Confidence            999999999999988753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=9.1e-33  Score=200.40  Aligned_cols=159  Identities=31%  Similarity=0.455  Sum_probs=139.5

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc-cccccceecCCcEEEEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-NRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-~~~~~~~~~~~d~~i~v~   84 (207)
                      ||+++|.+++| ||||+++++.+.+...+.||.+..+...+.+++..+.+.+||+||++.+ ......+++++|++|+||
T Consensus         1 ki~vvG~~~~G-Ktsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVG-KSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCc-HHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            68999999999 9999999999988888889887777777788999999999999999863 455678899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |+++++|++.+ ..|+..+....   +++|+++||||+|+.+.+.          +..++++++++.++. +|+++||++
T Consensus        80 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~  147 (165)
T cd04146          80 SITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAE  147 (165)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCC
Confidence            99999999999 78888777643   4899999999999876554          378889999999997 999999999


Q ss_pred             C-CCHHHHHHHHHHHHh
Q 028595          162 Q-QNVKAVFDAAIKVVI  177 (207)
Q Consensus       162 ~-~~i~~~f~~i~~~~~  177 (207)
                      + .|++++|+.+++.+.
T Consensus       148 ~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         148 DYDGVHSVFHELCREVR  164 (165)
T ss_pred             CchhHHHHHHHHHHHHh
Confidence            9 599999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.7e-32  Score=200.01  Aligned_cols=160  Identities=25%  Similarity=0.375  Sum_probs=143.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc-ccccceecCCcEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFV   81 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~d~~i   81 (207)
                      ..||+++|.+++| ||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.++ .++..+++++|+++
T Consensus         2 ~~ki~vvG~~~vG-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           2 IFKIIVIGDSNVG-KTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            4799999999999 9999999999998888889988766 4577888989999999999999887 57889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +|||+++++++..+ ..|+..+....  .++|+++|+||+|+...+.+          ..++++++++.+++ +|+++||
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa  148 (170)
T cd04115          81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQV----------PTDLAQRFADAHSM-PLFETSA  148 (170)
T ss_pred             EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcCC----------CHHHHHHHHHHcCC-cEEEEec
Confidence            99999999999999 78998887654  57999999999999876653          78889999999887 9999999


Q ss_pred             CC---CCCHHHHHHHHHHHH
Q 028595          160 KT---QQNVKAVFDAAIKVV  176 (207)
Q Consensus       160 ~~---~~~i~~~f~~i~~~~  176 (207)
                      ++   +.+++++|..+++.+
T Consensus       149 ~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         149 KDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             cCCcCCCCHHHHHHHHHHHh
Confidence            99   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=2.9e-32  Score=198.41  Aligned_cols=161  Identities=29%  Similarity=0.435  Sum_probs=144.4

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||+++|.++.+...+.||.+..+...+.+++..+.+.+|||||++.+..+++.+++.++++++||
T Consensus         2 ~ki~liG~~~~G-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVG-KSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCC-HHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            689999999999 9999999999999888999998887777888898999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |++++++++.+ ..|...+.+..  ++.|+++++||.|+.+.+..          ..+++..+++.++..+++++||+++
T Consensus        81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~SA~~~  149 (168)
T cd04177          81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQV----------SREDGVSLSQQWGNVPFYETSARKR  149 (168)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCcc----------CHHHHHHHHHHcCCceEEEeeCCCC
Confidence            99999999999 77877776532  57999999999999766543          7778888989888448999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028595          163 QNVKAVFDAAIKVVI  177 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~  177 (207)
                      .|++++|++++..++
T Consensus       150 ~~i~~~f~~i~~~~~  164 (168)
T cd04177         150 TNVDEVFIDLVRQII  164 (168)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=1.5e-32  Score=208.00  Aligned_cols=161  Identities=20%  Similarity=0.266  Sum_probs=138.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCcee-eeeeeEEEECCeEEEEEEEeCCCCccccccccceec-CCcEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR-GADVFV   81 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~-~~d~~i   81 (207)
                      +||+++|.++|| ||||+++|..+.+. ..+.++.+ +.+...+.+++..+.+.+|||+|++  ......++. ++|+++
T Consensus         1 ~KI~lvG~~gvG-KTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~ii   77 (221)
T cd04148           1 YRVVMLGSPGVG-KSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFV   77 (221)
T ss_pred             CEEEEECCCCCc-HHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEE
Confidence            489999999999 99999999988876 77778876 4456778888999999999999998  233455666 899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +|||++++++++.+ ..|+..+....  .++|+++|+||+|+.+.+.+          ..+++++++..+++ +|+++||
T Consensus        78 lV~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v----------~~~~~~~~a~~~~~-~~~e~SA  145 (221)
T cd04148          78 VVYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSREV----------SVQEGRACAVVFDC-KFIETSA  145 (221)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhcccccee----------cHHHHHHHHHHcCC-eEEEecC
Confidence            99999999999998 78888876654  57999999999999776653          77888899998888 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +++.|++++|+++++.+...+
T Consensus       146 ~~~~gv~~l~~~l~~~~~~~~  166 (221)
T cd04148         146 GLQHNVDELLEGIVRQIRLRR  166 (221)
T ss_pred             CCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999987443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=2.5e-32  Score=197.74  Aligned_cols=159  Identities=24%  Similarity=0.371  Sum_probs=139.3

Q ss_pred             eeEEEEecccccceeeeeeeccCC--CCCccccCceeeee-eeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR--SSIWDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      .||+++|.+++| ||||++++..+  .+...+.+|.+.++ ...+.++ +..+.+.+|||+|++.+..++..++.++|++
T Consensus         1 ~ki~vvG~~~~G-Ktsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i   79 (164)
T cd04101           1 LRCAVVGDPAVG-KTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVF   79 (164)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEE
Confidence            489999999999 99999999865  67788999998776 3455554 6789999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      ++|||+++++++..+ ..|+..+....++.|+++|+||+|+.+..++          ...+++.++..+++ +++++||+
T Consensus        80 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~  147 (164)
T cd04101          80 ILVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAEV----------TDAQAQAFAQANQL-KFFKTSAL  147 (164)
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccCC----------CHHHHHHHHHHcCC-eEEEEeCC
Confidence            999999999999988 7899888776678999999999999766553          66777888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028595          161 TQQNVKAVFDAAIKVV  176 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~  176 (207)
                      ++.|++++|+.+++.+
T Consensus       148 ~~~gi~~l~~~l~~~~  163 (164)
T cd04101         148 RGVGYEEPFESLARAF  163 (164)
T ss_pred             CCCChHHHHHHHHHHh
Confidence            9999999999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-33  Score=189.00  Aligned_cols=164  Identities=24%  Similarity=0.435  Sum_probs=153.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+|.+++|+-+|| ||+|+++|...+|..+...|+|.+| ...+.+.|+.++++||||+||++|+...+.|++++-+.+
T Consensus        10 yifkyiiigdmgvg-kscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVG-KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             heEEEEEEcccccc-HHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            46899999999999 9999999999999999999999999 557888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      .|||++.+.+++++ ..|+....... |+..++++|||.|+...+++          +.+++++|+++.|+ .|.|+||+
T Consensus        89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrdv----------~yeeak~faeengl-~fle~sak  156 (215)
T KOG0097|consen   89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRDV----------TYEEAKEFAEENGL-MFLEASAK  156 (215)
T ss_pred             EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhcccC----------cHHHHHHHHhhcCe-EEEEeccc
Confidence            99999999999999 78988877665 78889999999999988885          99999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.|+++.|-+...++.+.
T Consensus       157 tg~nvedafle~akkiyqn  175 (215)
T KOG0097|consen  157 TGQNVEDAFLETAKKIYQN  175 (215)
T ss_pred             ccCcHHHHHHHHHHHHHHh
Confidence            9999999999999888753

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3.9e-32  Score=202.45  Aligned_cols=164  Identities=22%  Similarity=0.290  Sum_probs=136.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc--------ccceec
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSYR   75 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~   75 (207)
                      .||+++|.++|| ||||+++|.++.+...+.||.+..+ ...+.+++..+.+.+|||||.+.+...        ...+++
T Consensus         1 ~kI~ivG~~~vG-KTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~   79 (198)
T cd04142           1 VRVAVLGAPGVG-KTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR   79 (198)
T ss_pred             CEEEEECCCCCc-HHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence            489999999999 9999999999999888999987554 456778898999999999997654321        234578


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-HhC
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIG  150 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~----~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~  150 (207)
                      ++|++|+|||+++++|++.+ ..|+..+...    .+++|+++||||+|+.+.+.+          ..++++.++. .++
T Consensus        80 ~ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~----------~~~~~~~~~~~~~~  148 (198)
T cd04142          80 NSRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA----------PRHVLSVLVRKSWK  148 (198)
T ss_pred             cCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECccccccccc----------cHHHHHHHHHHhcC
Confidence            99999999999999999999 7887777554    257999999999999765543          6667777765 456


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      + +|+++||++|.|++++|+.+++.+..+..
T Consensus       149 ~-~~~e~Sak~g~~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         149 C-GYLECSAKYNWHILLLFKELLISATTRGR  178 (198)
T ss_pred             C-cEEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence            6 99999999999999999999999886644

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=4.2e-32  Score=196.34  Aligned_cols=161  Identities=29%  Similarity=0.522  Sum_probs=144.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.+++| ||||++++.++.+...+.++.+.++ ...+..++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         1 ~kv~v~G~~~~G-KTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T smart00175        1 FKIILIGDSGVG-KSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV   79 (164)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence            589999999999 9999999999998888888988776 44677888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ||++++++++.+ ..|+..+.... +++|+++++||+|+.....+          ..+.++++++.+++ +++++||.++
T Consensus        80 ~d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa~~~  147 (164)
T smart00175       80 YDITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQV----------SREEAEAFAEEHGL-PFFETSAKTN  147 (164)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccCC----------CHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            999999999998 67998887766 68999999999998765543          77889999999887 8999999999


Q ss_pred             CCHHHHHHHHHHHHhC
Q 028595          163 QNVKAVFDAAIKVVIK  178 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~  178 (207)
                      .|++++|+++++.+.+
T Consensus       148 ~~i~~l~~~i~~~~~~  163 (164)
T smart00175      148 TNVEEAFEELAREILK  163 (164)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998754

Rab GTPases are implicated in vesicle trafficking.

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=9e-32  Score=194.57  Aligned_cols=160  Identities=33%  Similarity=0.509  Sum_probs=143.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||+++++++++...+.+|.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++
T Consensus         1 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   79 (163)
T cd01860           1 QFKLVLLGDSSVG-KSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV   79 (163)
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence            3699999999999 9999999999998887889988776 5678889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||+++++++..+ ..|+..+.... +++|+++++||+|+.+....          ..+++..+++.++. +++++||++
T Consensus        80 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~  147 (163)
T cd01860          80 VYDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQV----------STEEAQEYADENGL-LFFETSAKT  147 (163)
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCcC----------CHHHHHHHHHHcCC-EEEEEECCC
Confidence            9999999999999 78888887665 67999999999998765443          77888999999986 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKVV  176 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~  176 (207)
                      |.|++++|+++++.+
T Consensus       148 ~~~v~~l~~~l~~~l  162 (163)
T cd01860         148 GENVNELFTEIAKKL  162 (163)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.1e-31  Score=193.73  Aligned_cols=158  Identities=33%  Similarity=0.482  Sum_probs=140.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .||+++|.+++| ||||++++.+.++...+.|+.+.++ ...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus         1 ~ki~liG~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v   79 (161)
T cd01861           1 HKLVFLGDQSVG-KTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   79 (161)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            489999999999 9999999999998888888888665 55777888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ||+++++++..+ ..|+..+.... .+.|+++++||+|+.+.+..          ..++...+++..+. +++++||+++
T Consensus        80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (161)
T cd01861          80 YDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQV----------STEEGEKKAKELNA-MFIETSAKAG  147 (161)
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCcc----------CHHHHHHHHHHhCC-EEEEEeCCCC
Confidence            999999999999 78888876544 36999999999999655443          77888999988887 8999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIKV  175 (207)
Q Consensus       163 ~~i~~~f~~i~~~  175 (207)
                      .|++++|+++.+.
T Consensus       148 ~~v~~l~~~i~~~  160 (161)
T cd01861         148 HNVKELFRKIASA  160 (161)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.6e-31  Score=201.31  Aligned_cols=165  Identities=28%  Similarity=0.492  Sum_probs=143.2

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|.++.+ ..+.||.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus        13 ~~~kv~ivG~~~vG-KTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         13 LSFKILLIGDSGVG-KSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             cceEEEEECcCCCC-HHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            46799999999999 9999999998876 46778888776 446778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +|||++++++++.+...|...+....  .+.|+++|+||+|+...+.+          ..+++..++..+++ +|+++||
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i----------~~~~~~~~~~~~~~-~~~e~SA  159 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV----------SREEGMALAKEHGC-LFLECSA  159 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence            99999999999999556777766543  46899999999999766543          77888889998887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +++.|++++|+++.+.+...+
T Consensus       160 k~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        160 KTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999887543

>cd00157 Rho Rho (Ras homology) family

Probab=99.98  E-value=3.1e-31  Score=193.14  Aligned_cols=169  Identities=51%  Similarity=0.872  Sum_probs=145.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||+++|+++.+...+.|+....+...+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVG-KTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            589999999999 9999999999998888889988878777888899999999999999998888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC-CCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  163 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  163 (207)
                      |+++++++......|+..+....++.|+++|+||+|+.+....... ......+..+++..++..++..+|+++||++|.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            9999999999877898888877778999999999999766532000 001122467888999999997799999999999


Q ss_pred             CHHHHHHHHHH
Q 028595          164 NVKAVFDAAIK  174 (207)
Q Consensus       164 ~i~~~f~~i~~  174 (207)
                      |++++|+++++
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01862 Rab7 Rab7 subfamily

Probab=99.98  E-value=3.5e-31  Score=193.07  Aligned_cols=164  Identities=27%  Similarity=0.446  Sum_probs=142.7

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.+++| ||||++++.++.+...+.+|.+.++ ...+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         1 ~ki~viG~~~~G-KSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   79 (172)
T cd01862           1 LKVIILGDSGVG-KTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV   79 (172)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence            489999999999 9999999999998888888988666 45678888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      ||++++++++.+ ..|...+....     .++|+++|+||+|+...+.          +..++.+.+++..+..+++++|
T Consensus        80 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~S  148 (172)
T cd01862          80 YDVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETS  148 (172)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEE
Confidence            999999999888 67776654433     2799999999999975443          2678888899888855999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCC
Q 028595          159 SKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      |++|.|++++|+++++.+.+..
T Consensus       149 a~~~~gv~~l~~~i~~~~~~~~  170 (172)
T cd01862         149 AKEAINVEQAFETIARKALEQE  170 (172)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999887763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=5.2e-31  Score=190.28  Aligned_cols=157  Identities=28%  Similarity=0.500  Sum_probs=139.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.+++| ||||+++|.++.+...+.|+.+.++. ..+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         1 ~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   79 (161)
T cd01863           1 LKILLIGDSGVG-KSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV   79 (161)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence            589999999999 99999999999887778899887764 4566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+ ..|+..+....  ++.|+++|+||+|+....           +..++...+++..++ +++++||++
T Consensus        80 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  146 (161)
T cd01863          80 YDVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKT  146 (161)
T ss_pred             EECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCC
Confidence            999999999998 67988887664  589999999999997443           267788999999887 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKV  175 (207)
Q Consensus       162 ~~~i~~~f~~i~~~  175 (207)
                      |.|++++|+++++.
T Consensus       147 ~~gi~~~~~~~~~~  160 (161)
T cd01863         147 RDGVQQAFEELVEK  160 (161)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=1.1e-30  Score=188.46  Aligned_cols=159  Identities=31%  Similarity=0.486  Sum_probs=139.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.+++| ||||++++.++.+...+.++.+..+ ...+...+..+.+.+||++|++.+..++..+++++|++++|
T Consensus         1 ~ki~i~G~~~~G-KStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (162)
T cd04123           1 FKVVLLGEGRVG-KTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILV   79 (162)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence            489999999999 9999999999988777777776665 44677778888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ||++++++++.+ ..|+..+.... .++|+++++||+|+......          ..++++++++.++. +++++||+++
T Consensus        80 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~s~~~~  147 (162)
T cd04123          80 YDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRVV----------SKSEAEEYAKSVGA-KHFETSAKTG  147 (162)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccCC----------CHHHHHHHHHHcCC-EEEEEeCCCC
Confidence            999999999998 78888887665 37999999999999765543          67788888888887 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIKVV  176 (207)
Q Consensus       163 ~~i~~~f~~i~~~~  176 (207)
                      +|++++|+++.+.+
T Consensus       148 ~gi~~~~~~l~~~~  161 (162)
T cd04123         148 KGIEELFLSLAKRM  161 (162)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=1.2e-30  Score=188.67  Aligned_cols=160  Identities=31%  Similarity=0.459  Sum_probs=142.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||+++++.+.+...+.++.++.+......++..+.+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~~~G~~~~G-KTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVG-KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999 9999999999999888999998888778888989999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |++++.++..+ ..|...+....  .++|+++|+||+|+.+.+..          ...+...+++.++. +++++||+++
T Consensus        80 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (164)
T cd04139          80 SITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV----------SSEEAANLARQWGV-PYVETSAKTR  147 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEcccccccccc----------CHHHHHHHHHHhCC-eEEEeeCCCC
Confidence            99999999998 66766665542  57999999999999764332          67778888888887 9999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028595          163 QNVKAVFDAAIKVVI  177 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~  177 (207)
                      .|++++|+++++.+.
T Consensus       148 ~gi~~l~~~l~~~~~  162 (164)
T cd04139         148 QNVEKAFYDLVREIR  162 (164)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=1.1e-30  Score=192.09  Aligned_cols=176  Identities=28%  Similarity=0.437  Sum_probs=148.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      .||+++|.+++| ||||++++.++.+...+.||.+..+...+.+++..+.+.+||+||++++..++..++..++++++||
T Consensus         2 ~kv~l~G~~g~G-KTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVG-KSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCC-HHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            689999999999 9999999999998888889888777777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |+++.++++.+ ..|...+... . .+.|+++++||+|+...+.+          ..++...+++.++. +++++||+++
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (180)
T cd04137          81 SVTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV----------STEEGKELAESWGA-AFLESSAREN  148 (180)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc----------CHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            99999999999 5554544432 2 47899999999999765543          66678888888887 8999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCcchhhhcccCCCeEE
Q 028595          163 QNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLL  195 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~  195 (207)
                      .|+.++|.++.+.+...+...  ....+.+|.+
T Consensus       149 ~gv~~l~~~l~~~~~~~~~~~--~~~~~~~~~~  179 (180)
T cd04137         149 ENVEEAFELLIEEIEKVENPL--DPGQKKKCSI  179 (180)
T ss_pred             CCHHHHHHHHHHHHHHhcCCC--CCCCCCCcee
Confidence            999999999999887665433  2234567765

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=3.3e-30  Score=187.18  Aligned_cols=164  Identities=21%  Similarity=0.275  Sum_probs=132.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      .||+++|..++| ||||+++|.++.+...+.++ ...+.....+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus         1 ~kv~ivG~~~vG-KTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVG-KSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999 99999999999987665443 3444555566778899999999999988887788889999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-CcEEEEeccCCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQ  163 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~  163 (207)
                      |++++++++.+...|...+....++.|+++|+||+|+.+....        ....+++..+++.++ ..+++++||+++.
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  150 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLI  150 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEecccccc
Confidence            9999999999855788888776678999999999999765431        001234444555543 2379999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 028595          164 NVKAVFDAAIKVVIK  178 (207)
Q Consensus       164 ~i~~~f~~i~~~~~~  178 (207)
                      |++++|+.+.+.+..
T Consensus       151 ~v~~lf~~~~~~~~~  165 (166)
T cd01893         151 NVSEVFYYAQKAVLH  165 (166)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.3e-30  Score=191.86  Aligned_cols=156  Identities=13%  Similarity=0.163  Sum_probs=122.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.+++| ||||++++..+.+. .+.||++..+. .+.  ...+.+.+||+||++.++.++..+++++|++|+
T Consensus        16 ~~~ki~ivG~~~~G-KTsl~~~l~~~~~~-~~~pt~g~~~~-~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         16 KEMRILMVGLDAAG-KTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CccEEEEECCCCCC-HHHHHHHHccCCCc-cccCCcceeEE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35799999999999 99999999988775 46788876543 233  345889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc-------EE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS-------YY  154 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~  154 (207)
                      |||+++++++.++...+...+.+.. +++|++|++||+|+....            ..+   ++.+.+++.       .+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~------------~~~---~~~~~l~l~~~~~~~~~~  155 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAA---EITDKLGLHSLRQRHWYI  155 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC------------CHH---HHHHHhCccccCCCceEE
Confidence            9999999999988444444443322 589999999999986542            323   333334432       35


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +++||++|+|++++|++|++.+..
T Consensus       156 ~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        156 QSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             EeccCCCCCCHHHHHHHHHHHHhh
Confidence            589999999999999999988764

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=7.9e-30  Score=185.51  Aligned_cols=161  Identities=26%  Similarity=0.432  Sum_probs=140.2

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ...||+++|.+++| ||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         6 ~~~~v~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           6 FLFKIVLIGNAGVG-KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             ceeEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            36899999999999 9999999998888777788887655 446788888899999999999999998899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||+++.++++.+ ..|+..+.... .++|+++++||+|+.+.+++          ..+..+.+.+.... +++++||+
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i----------~~~~~~~~~~~~~~-~~~~~Sa~  152 (169)
T cd04114          85 LTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERREV----------SQQRAEEFSDAQDM-YYLETSAK  152 (169)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccccc----------CHHHHHHHHHHcCC-eEEEeeCC
Confidence            99999999999988 78888887655 47999999999999766553          66677788777775 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028595          161 TQQNVKAVFDAAIKVV  176 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~  176 (207)
                      +|.|++++|+++.+.+
T Consensus       153 ~~~gv~~l~~~i~~~~  168 (169)
T cd04114         153 ESDNVEKLFLDLACRL  168 (169)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=6.4e-30  Score=190.82  Aligned_cols=161  Identities=24%  Similarity=0.324  Sum_probs=136.4

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   85 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   85 (207)
                      ||+++|.+++| ||||+++|+++.+...+.+|....+...+.+++..+.+.+||++|++.+..++..++.++|++|+|||
T Consensus         1 kv~vvG~~~vG-KTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVG-KTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCC-HHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            78999999999 99999999999988888888876666678888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccC-cccccCCCCCcccCHHHHHHHHH-HhCCcEEEEeccCC
Q 028595           86 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLRED-KHYLADHPGLVPVTTAQGEELRK-QIGASYYIECSSKT  161 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~e~Sa~~  161 (207)
                      ++++++++.+ ..|+..+....  .++|+++|+||+|+.+. ..          +..+++.+... ..+. +++++||++
T Consensus        80 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~----------v~~~~~~~~~~~~~~~-~~~~~Sa~~  147 (198)
T cd04147          80 VDDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEERQ----------VPAKDALSTVELDWNC-GFVETSAKD  147 (198)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEcccccccccc----------ccHHHHHHHHHhhcCC-cEEEecCCC
Confidence            9999999999 78877766544  47999999999998653 32          24445544443 3454 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028595          162 QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~  179 (207)
                      |.|++++|+++++.+...
T Consensus       148 g~gv~~l~~~l~~~~~~~  165 (198)
T cd04147         148 NENVLEVFKELLRQANLP  165 (198)
T ss_pred             CCCHHHHHHHHHHHhhcc
Confidence            999999999999987644

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00876 Ras Ras family

Probab=99.97  E-value=5.5e-30  Score=184.36  Aligned_cols=158  Identities=30%  Similarity=0.533  Sum_probs=140.2

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   85 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   85 (207)
                      ||+++|.+++| ||||+++++++.+...+.++.+..+...+..++..+.+.+||+||++.+..++..+++++|++++|||
T Consensus         1 ki~i~G~~~~G-KTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVG-KSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCC-HHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            79999999999 99999999999888888899886667778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595           86 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  163 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  163 (207)
                      +++++++.++ ..|...+....  ...|+++++||+|+.+....          ..++++.++..++. +++++||+++.
T Consensus        80 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~S~~~~~  147 (160)
T cd00876          80 ITDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQV----------SKEEGKALAKEWGC-PFIETSAKDNI  147 (160)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCccccccee----------cHHHHHHHHHHcCC-cEEEeccCCCC
Confidence            9999999998 67766666554  48999999999999875543          77889999998886 99999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028595          164 NVKAVFDAAIKVV  176 (207)
Q Consensus       164 ~i~~~f~~i~~~~  176 (207)
                      |++++|++|++.+
T Consensus       148 ~i~~l~~~l~~~i  160 (160)
T cd00876         148 NIDEVFKLLVREI  160 (160)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.9e-30  Score=188.81  Aligned_cols=155  Identities=14%  Similarity=0.138  Sum_probs=122.4

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.+++| ||||++++..+.+. .+.||++.++. .+.  ...+.+.+|||+|+++++.++..+++++|++|+
T Consensus         8 ~~~kv~i~G~~~~G-KTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAG-KTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCC-HHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35799999999999 99999999887764 46788876553 222  245889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh---C-CcEEEEe
Q 028595           83 AFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI---G-ASYYIEC  157 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~-~~~~~e~  157 (207)
                      |||++++.++.++...|...+... .+++|++||+||+|+.+..            ..++++.+++..   + ..+++++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~  150 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------------KPHEIQEKLGLTRIRDRNWYVQPS  150 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------------CHHHHHHHcCCCccCCCcEEEEEe
Confidence            999999999999844444444432 2679999999999986431            556666654321   1 1268999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 028595          158 SSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~  174 (207)
                      ||++|.|++++|++|.+
T Consensus       151 SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         151 CATSGDGLYEGLTWLSS  167 (168)
T ss_pred             eCCCCCChHHHHHHHhc
Confidence            99999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=7.3e-31  Score=190.31  Aligned_cols=152  Identities=15%  Similarity=0.161  Sum_probs=126.9

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   86 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   86 (207)
                      |+++|.+++| ||||+++|.++.+...+.||++..+   ..+++..+.+.+||++|++.++.++..+++++|++++|||.
T Consensus         2 i~ivG~~~vG-KTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAG-KTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCC-HHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            7899999999 9999999999988888899987543   33455678999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH----HHHHHHHHHhCCcEEEEeccCC-
Q 028595           87 VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT----AQGEELRKQIGASYYIECSSKT-  161 (207)
Q Consensus        87 ~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~e~Sa~~-  161 (207)
                      +++.++..+ ..|+..+....+++|+++|+||.|+...+.+          ..    .++..++++.++ .++++||++ 
T Consensus        78 t~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~----------~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~  145 (164)
T cd04162          78 ADSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARSV----------QEIHKELELEPIARGRRW-ILQGTSLDDD  145 (164)
T ss_pred             CCHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCCH----------HHHHHHhCChhhcCCCce-EEEEeeecCC
Confidence            999999988 6777766544478999999999998765431          11    235667776776 889988888 


Q ss_pred             -----CCCHHHHHHHHHH
Q 028595          162 -----QQNVKAVFDAAIK  174 (207)
Q Consensus       162 -----~~~i~~~f~~i~~  174 (207)
                           ++|++++|..++.
T Consensus       146 ~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         146 GSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             CChhHHHHHHHHHHHHhc
Confidence                 9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=4.6e-30  Score=186.99  Aligned_cols=157  Identities=13%  Similarity=0.176  Sum_probs=127.3

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   85 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   85 (207)
                      ||+++|.+++| ||||++++.++.+. .+.||.+..+. .+.  ...+.+.+|||||++.+..++..+++++|++++|||
T Consensus         1 ~vvlvG~~~~G-KTsl~~~l~~~~~~-~~~~T~~~~~~-~~~--~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAG-KTTILFKLKQDEFM-QPIPTIGFNVE-TVE--YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCC-HHHHHHHHhcCCCC-CcCCcCceeEE-EEE--ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999 99999999998765 47888875553 233  345889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-----cEEEEec
Q 028595           86 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-----SYYIECS  158 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~S  158 (207)
                      +++++++.++ ..|+..+....  .+.|+++++||+|+.+.            +..++++++++..+.     ..++++|
T Consensus        76 ~s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~S  142 (169)
T cd04158          76 SSHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCD  142 (169)
T ss_pred             CCcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCc
Confidence            9999999998 66666664332  46899999999999643            266777777653321     2577999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCC
Q 028595          159 SKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      |++|.|++++|++|++.+....
T Consensus       143 a~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         143 ARSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             CCCCCCHHHHHHHHHHHHhhcc
Confidence            9999999999999998877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-32  Score=192.80  Aligned_cols=168  Identities=27%  Similarity=0.337  Sum_probs=157.1

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcE
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   79 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~   79 (207)
                      ||.-+|++++|+.+|| |||+|+++|.+-|..+|..|+|.++.. ++.++++.+.+.+||++||+.++.+...|+++|++
T Consensus        17 ~e~aiK~vivGng~VG-KssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa   95 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVG-KSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA   95 (246)
T ss_pred             hhhhEEEEEECCCccc-hHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence            5778999999999999 999999999999999999999999844 78888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      .++||+.+|+.||+.. ..|.+.+......+|.++|-||+|+.++..+          ..++++.+++.+++ .++.+|+
T Consensus        96 ~vLVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~~----------~~~evE~lak~l~~-RlyRtSv  163 (246)
T KOG4252|consen   96 SVLVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQM----------DKGEVEGLAKKLHK-RLYRTSV  163 (246)
T ss_pred             eEEEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhhc----------chHHHHHHHHHhhh-hhhhhhh
Confidence            9999999999999999 8999999988889999999999999988875          89999999999998 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCc
Q 028595          160 KTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +...|+..+|..|++++.+...
T Consensus       164 ked~NV~~vF~YLaeK~~q~~k  185 (246)
T KOG4252|consen  164 KEDFNVMHVFAYLAEKLTQQKK  185 (246)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999876543

>cd00154 Rab Rab family

Probab=99.97  E-value=1.7e-29  Score=181.11  Aligned_cols=156  Identities=33%  Similarity=0.600  Sum_probs=139.4

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .||+++|.+++| ||||++++.++.+...+.+|.+.++ ...+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         1 ~~i~~~G~~~~G-KStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v   79 (159)
T cd00154           1 FKIVLIGDSGVG-KTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV   79 (159)
T ss_pred             CeEEEECCCCCC-HHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence            489999999999 9999999999998888888888777 45777788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      +|+++++++..+ ..|+..+.... ++.|+++++||+|+.....          ...++.+.++..++. +++++||+++
T Consensus        80 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~  147 (159)
T cd00154          80 YDITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTG  147 (159)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCC
Confidence            999999999999 77998887776 6899999999999974443          277889999998887 9999999999


Q ss_pred             CCHHHHHHHHH
Q 028595          163 QNVKAVFDAAI  173 (207)
Q Consensus       163 ~~i~~~f~~i~  173 (207)
                      .|++++|.+++
T Consensus       148 ~~i~~~~~~i~  158 (159)
T cd00154         148 ENVEELFQSLA  158 (159)
T ss_pred             CCHHHHHHHHh
Confidence            99999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=9.1e-30  Score=187.52  Aligned_cols=157  Identities=15%  Similarity=0.182  Sum_probs=122.2

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||++++..+.+.. +.||++..+. .+..  ..+.+.+|||||++.++.++..+++++|++|+
T Consensus        16 ~~~kv~lvG~~~vG-KTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAG-KTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCC-HHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            45899999999999 999999998887764 6788876553 2333  45889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-------cEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYY  154 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~  154 (207)
                      |||+++++++.++...+...+... .+++|++||+||.|+.+..            ..++.   +..++.       ..+
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i---~~~l~~~~~~~~~~~~  155 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------------STTEV---TEKLGLHSVRQRNWYI  155 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------------CHHHH---HHHhCCCcccCCcEEE
Confidence            999999999999844444444332 2578999999999986532            22222   222222       146


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++||++|.|++++|++|.+.+.+.
T Consensus       156 ~~~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        156 QGCCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             EeeeCCCCCCHHHHHHHHHHHHHHh
Confidence            6999999999999999999877654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=1.5e-29  Score=185.36  Aligned_cols=157  Identities=12%  Similarity=0.124  Sum_probs=120.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.+++| ||||++++..+.+. .+.||++..+. .+..  ..+.+.+|||||++.++.++..|++++|++|+
T Consensus        12 ~~~ki~l~G~~~~G-KTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAG-KTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCC-HHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            35799999999999 99999999887764 57788876553 2333  35889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHH-hhc-CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh----CCcEEEE
Q 028595           83 AFSLVSRASYENVLKKWIPEL-QHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIE  156 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i-~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~e  156 (207)
                      |||++++++++++ ..|+..+ ... .+++|++||+||.|+.+..            ..++........    ....+++
T Consensus        87 v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~  153 (175)
T smart00177       87 VVDSNDRDRIDEA-REELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNWYIQP  153 (175)
T ss_pred             EEECCCHHHHHHH-HHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcEEEEE
Confidence            9999999999998 4554444 332 2579999999999986542            222222221111    1114678


Q ss_pred             eccCCCCCHHHHHHHHHHHHh
Q 028595          157 CSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      +||++|.|++++|++|.+.+.
T Consensus       154 ~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      154 TCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             eeCCCCCCHHHHHHHHHHHhc
Confidence            999999999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=1.3e-29  Score=186.86  Aligned_cols=163  Identities=17%  Similarity=0.197  Sum_probs=128.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEE-CCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      -+||+++|.+++| ||||++++..+.+... .||.+... ...+.+ ++..+.+.+|||+|++.+..++..+++++|+++
T Consensus         3 ~~kv~~vG~~~~G-KTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           3 SLHIVMLGLDSAG-KTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            4799999999999 9999999998887644 67776444 334443 446789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-----CcEE
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-----ASYY  154 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~  154 (207)
                      +|||+++++++..+ ..|+..+....  .+.|+++|+||+|+.+..            ..++...+....+     ..++
T Consensus        81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T cd04152          81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNAL------------SVSEVEKLLALHELSASTPWHV  147 (183)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCccccC------------CHHHHHHHhCccccCCCCceEE
Confidence            99999999999888 66766665433  479999999999986432            3444554443111     1267


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +++||++|+|++++|++|++.+...++
T Consensus       148 ~~~SA~~~~gi~~l~~~l~~~l~~~~~  174 (183)
T cd04152         148 QPACAIIGEGLQEGLEKLYEMILKRRK  174 (183)
T ss_pred             EEeecccCCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999976544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=5.9e-29  Score=187.89  Aligned_cols=163  Identities=23%  Similarity=0.356  Sum_probs=141.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||+++++.+.+...|.||.+..+. ..+..++..+.+.+|||+|++.+..++..++.+++++++
T Consensus         9 ~~kv~liG~~g~G-KTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~   87 (215)
T PTZ00132          9 EFKLILVGDGGVG-KTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAII   87 (215)
T ss_pred             CceEEEECCCCCC-HHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEE
Confidence            5799999999999 99999999989888899999988774 466678889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |||+++..++..+ ..|+..+....++.|+++++||+|+.+...           ..+ ...+++..++ .++++||++|
T Consensus        88 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~-----------~~~-~~~~~~~~~~-~~~e~Sa~~~  153 (215)
T PTZ00132         88 MFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQV-----------KAR-QITFHRKKNL-QYYDISAKSN  153 (215)
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCccccC-----------CHH-HHHHHHHcCC-EEEEEeCCCC
Confidence            9999999999999 789888877667899999999999864321           333 3457777777 8999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCc
Q 028595          163 QNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~~~  181 (207)
                      .|++++|.++++.+...+.
T Consensus       154 ~~v~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        154 YNFEKPFLWLARRLTNDPN  172 (215)
T ss_pred             CCHHHHHHHHHHHHhhccc
Confidence            9999999999999886543

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=6.5e-30  Score=184.44  Aligned_cols=152  Identities=13%  Similarity=0.152  Sum_probs=117.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      .||+++|.+++| ||||++++..+.+. .+.||++..+. .+..  ..+.+.+||+||++++..++..+++++|++++||
T Consensus         1 ~kv~~~G~~~~G-KTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAG-KTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            489999999999 99999999888876 57888876543 2333  3588999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHH-HHHHHH----HhCCcEEEEec
Q 028595           85 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRK----QIGASYYIECS  158 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~-~~~~~~----~~~~~~~~e~S  158 (207)
                      |++++.++..+...|...+.... .++|+++++||+|+.+..            ..++ ...+..    ..+. .++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~S  142 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------------SAAEVTDKLGLHSLRNRNW-YIQATC  142 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------------CHHHHHHHhCccccCCCCE-EEEEee
Confidence            99999999998433444443322 479999999999986432            2222 222211    1122 577999


Q ss_pred             cCCCCCHHHHHHHHHH
Q 028595          159 SKTQQNVKAVFDAAIK  174 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~  174 (207)
                      |++|+|++++|++|.+
T Consensus       143 ak~g~gv~~~~~~l~~  158 (159)
T cd04150         143 ATSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCCCHHHHHHHHhc
Confidence            9999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=4.9e-28  Score=177.05  Aligned_cols=142  Identities=28%  Similarity=0.456  Sum_probs=125.2

Q ss_pred             CCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc
Q 028595           28 RSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY  106 (207)
Q Consensus        28 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~  106 (207)
                      +.|.+.|.||+|..+ ...+.+++..+.+.||||+|++++..++..+++++|++|+|||++++++++.+ ..|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence            456778999999777 55788899999999999999999999999999999999999999999999999 7888877654


Q ss_pred             C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          107 S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       107 ~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      . +++|++|||||+|+.+.+.          +..+++..+++.++. .|+++||++|.||+++|++|++.+.+.++
T Consensus        82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~  146 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDN  146 (176)
T ss_pred             cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence            4 6799999999999976554          378889999999988 89999999999999999999999876543

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.2e-28  Score=183.63  Aligned_cols=149  Identities=19%  Similarity=0.211  Sum_probs=122.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEEC-----CeEEEEEEEeCCCCccccccccceecCCc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAE-----GTTVNLGLWDTAGQEDYNRLRPLSYRGAD   78 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~d   78 (207)
                      +||+++|+.+|| ||||+++|+++.+...+.||++..+.. .+.++     +..+.+.||||+|++.+..++..+++++|
T Consensus         1 vKIvlvGd~gVG-KTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad   79 (202)
T cd04102           1 VRVLVVGDSGVG-KSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVN   79 (202)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCC
Confidence            489999999999 999999999999998999999876633 44443     57899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhc-------------------C-CCCcEEEEeeCCCcccCcccccCCCCCcccC
Q 028595           79 VFVLAFSLVSRASYENVLKKWIPELQHY-------------------S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVT  138 (207)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------------~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~  138 (207)
                      ++|+|||+++++|++.+ ..|+..+...                   . +++|++|||||.|+.+.+.+      .....
T Consensus        80 ~iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~------~~~~~  152 (202)
T cd04102          80 GIILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES------SGNLV  152 (202)
T ss_pred             EEEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc------chHHH
Confidence            99999999999999999 7999888652                   1 46899999999999766542      00001


Q ss_pred             HHHHHHHHHHhCCcEEEEeccCCC
Q 028595          139 TAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus       139 ~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ......+++..|. +.++.++.+.
T Consensus       153 ~~~~~~ia~~~~~-~~i~~~c~~~  175 (202)
T cd04102         153 LTARGFVAEQGNA-EEINLNCTNG  175 (202)
T ss_pred             hhHhhhHHHhcCC-ceEEEecCCc
Confidence            1235567888898 8888888754

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=2.7e-28  Score=178.28  Aligned_cols=152  Identities=16%  Similarity=0.162  Sum_probs=120.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|.+++| ||||+++|.+..+ ..+.||.+.. ...+.++  .+.+.+|||||++.++.++..++.++|++++|
T Consensus        14 ~~kv~ivG~~~~G-KTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (173)
T cd04154          14 EMRILILGLDNAG-KTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV   88 (173)
T ss_pred             ccEEEEECCCCCC-HHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            5799999999999 9999999998754 4567887632 2334444  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH-----hCCcEEEE
Q 028595           84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----IGASYYIE  156 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~e  156 (207)
                      ||++++.++.++ ..|+..+...  .+++|+++|+||+|+.+..            ..++++.+.+.     .++ ++++
T Consensus        89 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~  154 (173)
T cd04154          89 VDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGAL------------SEEEIREALELDKISSHHW-RIQP  154 (173)
T ss_pred             EECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccCC------------CHHHHHHHhCccccCCCce-EEEe
Confidence            999999999988 5565555322  2689999999999996543            34455555432     234 8999


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~  174 (207)
                      +||++|.|++++|++++.
T Consensus       155 ~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         155 CSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             ccCCCCcCHHHHHHHHhc
Confidence            999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=7e-28  Score=187.97  Aligned_cols=145  Identities=19%  Similarity=0.230  Sum_probs=121.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEEC-------------CeEEEEEEEeCCCCcccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAE-------------GTTVNLGLWDTAGQEDYNRL   69 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~D~~G~~~~~~~   69 (207)
                      .+||+++|..+|| ||||+++|+++.+...+.+|+|..+ .+.+.++             +..+.++||||+|+++|+.+
T Consensus        21 ~iKIVLLGdsGVG-KTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL   99 (334)
T PLN00023         21 QVRVLVVGDSGVG-KSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC   99 (334)
T ss_pred             ceEEEEECCCCCc-HHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence            4799999999999 9999999999999889999999876 4455554             35789999999999999999


Q ss_pred             ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-------------CCCcEEEEeeCCCcccCcccccCCCCCcc
Q 028595           70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------------PGVPVVLVGTKLDLREDKHYLADHPGLVP  136 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~piivv~nK~D~~~~~~~~~~~~~~~~  136 (207)
                      +..|++++|++|+|||++++++++++ ..|+..+....             .++|++|||||+|+...+..    .....
T Consensus       100 ~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~----r~~s~  174 (334)
T PLN00023        100 RSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGT----RGSSG  174 (334)
T ss_pred             hHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccc----ccccc
Confidence            99999999999999999999999999 89999987642             25899999999999654310    00111


Q ss_pred             cCHHHHHHHHHHhCCcEE
Q 028595          137 VTTAQGEELRKQIGASYY  154 (207)
Q Consensus       137 v~~~~~~~~~~~~~~~~~  154 (207)
                      +..+++++||++.|+.+.
T Consensus       175 ~~~e~a~~~A~~~g~l~~  192 (334)
T PLN00023        175 NLVDAARQWVEKQGLLPS  192 (334)
T ss_pred             ccHHHHHHHHHHcCCCcc
Confidence            367899999999987543

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=3.8e-28  Score=175.30  Aligned_cols=152  Identities=14%  Similarity=0.130  Sum_probs=116.3

Q ss_pred             eEEEEecccccceeeeeeeccCCC-CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS-SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +|+++|.+++| ||||+++|.++. ....+.||++.... .+.  ...+.+.+|||||++.+..++..+++++|++|+|+
T Consensus         1 ~i~~vG~~~~G-KTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSG-KTTIINQLKPENAQSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCC-HHHHHHHHcccCCCcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            58999999999 999999999876 35677888874432 222  34578999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc----CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH---HHHhC-CcEEEE
Q 028595           85 SLVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RKQIG-ASYYIE  156 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~----~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~-~~~~~e  156 (207)
                      |++++.++..+ ..|+..+...    ..++|+++|+||+|+.+..            ..++....   ....+ ..++++
T Consensus        77 D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~  143 (162)
T cd04157          77 DSSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFA  143 (162)
T ss_pred             eCCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEE
Confidence            99999999887 5666555332    1479999999999986542            22222221   11111 125899


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~  174 (207)
                      +||++|.|++++|++|.+
T Consensus       144 ~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         144 SNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             eeCCCCCchHHHHHHHhc
Confidence            999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=1.8e-27  Score=174.14  Aligned_cols=152  Identities=17%  Similarity=0.198  Sum_probs=118.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||++++..+.+.. +.||.+..+. .+..+  .+.+.+||+||++.+...+..+++++|++++|
T Consensus        15 ~~kv~~~G~~~~G-KTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAG-KTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCC-HHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            5799999999999 999999999888764 5788876653 33333  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHH-hhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHH-HHHHH----HHhCCcEEEE
Q 028595           84 FSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELR----KQIGASYYIE  156 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i-~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~-~~~~~----~~~~~~~~~e  156 (207)
                      +|+++++++... ..++..+ .... +++|+++++||+|+.+..            ..++ .+.+.    +..++ ++++
T Consensus        90 ~D~s~~~~~~~~-~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------------~~~~i~~~l~~~~~~~~~~-~~~~  155 (174)
T cd04153          90 IDSTDRERLPLT-KEELYKMLAHEDLRKAVLLVLANKQDLKGAM------------TPAEISESLGLTSIRDHTW-HIQG  155 (174)
T ss_pred             EECCCHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EEEe
Confidence            999999999888 4444444 3322 579999999999986532            2222 22221    22344 7899


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~  174 (207)
                      +||++|.|++++|++|.+
T Consensus       156 ~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         156 CCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             cccCCCCCHHHHHHHHhc
Confidence            999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=5.8e-28  Score=175.63  Aligned_cols=157  Identities=15%  Similarity=0.140  Sum_probs=120.4

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   85 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   85 (207)
                      +|+++|.+++| ||||++++.++ +...+.||++.. ...+..+  .+.+.+||+||++.++.++..|++++|++|+|||
T Consensus         1 ~i~~~G~~~~G-KTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAG-KTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCC-HHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            48999999999 99999999977 677788998754 2344443  4789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-cEEEEeccCCC
Q 028595           86 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQ  162 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~  162 (207)
                      ++++.++.++ ..|+..+....  .++|+++|+||+|+.+.....      ..+....+..++++.+. .+++++||++|
T Consensus        76 ~s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~------~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g  148 (167)
T cd04161          76 SSDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGA------DVIEYLSLEKLVNENKSLCHIEPCSAIEG  148 (167)
T ss_pred             CCchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH------HHHHhcCcccccCCCCceEEEEEeEceeC
Confidence            9999999998 66776665432  579999999999997654210      00011112334433333 25677999998


Q ss_pred             ------CCHHHHHHHHHH
Q 028595          163 ------QNVKAVFDAAIK  174 (207)
Q Consensus       163 ------~~i~~~f~~i~~  174 (207)
                            .|+.+.|+||..
T Consensus       149 ~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         149 LGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCCccccCHHHHHHHHhc
Confidence                  899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=2.5e-27  Score=170.65  Aligned_cols=151  Identities=15%  Similarity=0.167  Sum_probs=115.1

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   85 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   85 (207)
                      ||+++|.+++| ||||++++..+.+. .+.||++.++. .+.  +..+.+.+|||||++.++.++..+++++|++++|+|
T Consensus         1 kv~lvG~~~~G-KTsl~~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAG-KTTILYRLQLGEVV-TTIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCC-HHHHHHHHccCCCc-CcCCccCcCeE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999 99999999888765 45677765442 222  345789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH-HHH----HHhCCcEEEEecc
Q 028595           86 LVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELR----KQIGASYYIECSS  159 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-~~~----~~~~~~~~~e~Sa  159 (207)
                      ++++.++......|...+.... ++.|+++++||+|+.+..            ...+.. .+.    ...+. +++++||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~Sa  142 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRTW-SIFKTSA  142 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCcE-EEEEeec
Confidence            9999888776444444444322 579999999999986542            122221 111    11123 6999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 028595          160 KTQQNVKAVFDAAIK  174 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~  174 (207)
                      ++|.|++++|+++++
T Consensus       143 ~~~~gi~~l~~~l~~  157 (158)
T cd04151         143 IKGEGLDEGMDWLVN  157 (158)
T ss_pred             cCCCCHHHHHHHHhc
Confidence            999999999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.94  E-value=6.5e-27  Score=168.67  Aligned_cols=151  Identities=21%  Similarity=0.234  Sum_probs=116.3

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   85 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   85 (207)
                      +|+++|.+++| ||||+++|.++.+.. +.||.+..+. .+.. +..+.+.+||+||++.+...+..++.++|++++|+|
T Consensus         1 ~i~i~G~~~~G-KTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAG-KSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCC-HHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999 999999999998754 4677764432 2333 345889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH------HHHHHhCCcEEEEe
Q 028595           86 LVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE------ELRKQIGASYYIEC  157 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~e~  157 (207)
                      ++++.++..+ ..|+..+.+. . .+.|+++|+||+|+....            ..++..      .++...+. +++++
T Consensus        77 ~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~-~~~~~  142 (160)
T cd04156          77 SSDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPGAL------------TAEEITRRFKLKKYCSDRDW-YVQPC  142 (160)
T ss_pred             CCcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccccCc------------CHHHHHHHcCCcccCCCCcE-EEEec
Confidence            9999999888 5555554332 2 589999999999986432            222222      22222333 68999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 028595          158 SSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~  174 (207)
                      ||++|+|++++|++|.+
T Consensus       143 Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         143 SAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             ccccCCChHHHHHHHhc
Confidence            99999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00879 Sar1 Sar1 subfamily

Probab=99.94  E-value=9.8e-27  Score=172.47  Aligned_cols=154  Identities=17%  Similarity=0.199  Sum_probs=122.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|.+++| ||||++++.++.+. .+.||.+.. ...+.+++  +.+.+||+||++.+..++..+++++|++++|
T Consensus        19 ~~ki~ilG~~~~G-KStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV   93 (190)
T cd00879          19 EAKILFLGLDNAG-KTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL   93 (190)
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            5799999999999 99999999988764 567777653 33455555  6788999999999988899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh------------
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------------  149 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------  149 (207)
                      +|+++.+++... ..|+..+....  .+.|+++++||+|+...            +..++.+.++...            
T Consensus        94 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  160 (190)
T cd00879          94 VDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLKV  160 (190)
T ss_pred             EECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCcccccccccccccc
Confidence            999999999887 45555543322  57999999999998642            2556666666432            


Q ss_pred             ---CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          150 ---GASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       150 ---~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                         ...++++|||++|+|++++|+++++.
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             cCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence               11368999999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.94  E-value=1.9e-26  Score=165.90  Aligned_cols=151  Identities=19%  Similarity=0.213  Sum_probs=117.8

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   85 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   85 (207)
                      ||+++|.+++| ||||+++++++. ...+.+|.+..+. .+.++  .+.+.+||+||++.+...+..+++++|++++|||
T Consensus         1 ki~iiG~~~~G-Kssli~~~~~~~-~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAG-KTTILYKLKLGE-VVTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCC-HHHHHHHHhcCC-CCCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            79999999999 999999999988 4456677765442 23333  4789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh----CCcEEEEecc
Q 028595           86 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIECSS  159 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~e~Sa  159 (207)
                      +++++++..+ ..|+..+....  ++.|+++++||+|+....            ..++........    ...+++++||
T Consensus        76 ~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa  142 (158)
T cd00878          76 SSDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRWHIQPCSA  142 (158)
T ss_pred             CCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcEEEEEeeC
Confidence            9999999998 55555544332  589999999999987643            223333332211    1237999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 028595          160 KTQQNVKAVFDAAIK  174 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~  174 (207)
                      ++|.|++++|++|+.
T Consensus       143 ~~~~gv~~~~~~l~~  157 (158)
T cd00878         143 VTGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCCHHHHHHHHhh
Confidence            999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.94  E-value=2.4e-26  Score=166.83  Aligned_cols=152  Identities=17%  Similarity=0.231  Sum_probs=116.8

Q ss_pred             eEEEEecccccceeeeeeeccCCCC------CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSS------IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   79 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~   79 (207)
                      +|+++|.+++| ||||++++.+...      ...+.||.+..+. .+..+  ...+.+|||||++.+..++..+++++|+
T Consensus         1 ~i~~vG~~~~G-KstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAG-KTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCC-HHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            58999999999 9999999975422      2345666665542 33444  4788999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh------CC
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------GA  151 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~  151 (207)
                      +++|+|+++++++... ..|+..+.+..  .+.|+++++||+|+.+..            ..++...+.+..      ..
T Consensus        77 ~v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~  143 (167)
T cd04160          77 IIYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDAL------------SVEEIKEVFQDKAEEIGRRD  143 (167)
T ss_pred             EEEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccCC------------CHHHHHHHhccccccccCCc
Confidence            9999999999998888 55655554322  579999999999986542            444455554432      12


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHH
Q 028595          152 SYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       152 ~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      .+++++||++|.|++++|++|.+
T Consensus       144 ~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         144 CLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             eEEEEeeCCCCcCHHHHHHHHhc
Confidence            37999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=3.1e-26  Score=167.66  Aligned_cols=158  Identities=18%  Similarity=0.229  Sum_probs=125.3

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ....||+++|.+++| ||||++++..+... .+.||.|... ..+..++  +.+.+||++|++.++.+|+.|++++|++|
T Consensus        12 ~~~~~ililGl~~sG-KTtll~~l~~~~~~-~~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSG-KTTLLNRLKNGEIS-ETIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSS-HHHHHHHHHSSSEE-EEEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccc-hHHHHHHhhhcccc-ccCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            356899999999999 99999999887643 4778877543 3444455  67899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-----CcEEE
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-----ASYYI  155 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~  155 (207)
                      ||+|.++.+.+.+....+...+.... .+.|++|++||.|+.+..            ..++.........     ....+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~------------~~~~i~~~l~l~~l~~~~~~~v~  154 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM------------SEEEIKEYLGLEKLKNKRPWSVF  154 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS------------THHHHHHHTTGGGTTSSSCEEEE
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc------------hhhHHHhhhhhhhcccCCceEEE
Confidence            99999999999998555555555433 589999999999987643            4444444333221     12577


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 028595          156 ECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      .|||.+|+|+.+.|+||.+++
T Consensus       155 ~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  155 SCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHhcC
Confidence            899999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=4.3e-26  Score=167.35  Aligned_cols=156  Identities=14%  Similarity=0.138  Sum_probs=117.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCC-------CCccccCce------eeeee-eEEEE-----CCeEEEEEEEeCCCCcc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS-------SIWDYIPTV------FDNFS-ANVVA-----EGTTVNLGLWDTAGQED   65 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~-------~~~~~~~t~------~~~~~-~~~~~-----~~~~~~l~i~D~~G~~~   65 (207)
                      .+|+++|..++| ||||+++|++..       +...+.++.      +.++. ..+.+     ++..+.+.+|||||++.
T Consensus         1 rni~~vG~~~~G-KssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   79 (179)
T cd01890           1 RNFSIIAHIDHG-KSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD   79 (179)
T ss_pred             CcEEEEeecCCC-HHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence            379999999999 999999998632       222333332      22332 12222     66788999999999999


Q ss_pred             ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH
Q 028595           66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL  145 (207)
Q Consensus        66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~  145 (207)
                      +...+..+++++|++|+|||+++..+.+.. ..|.....   .++|+++|+||+|+.+..            ..+..+++
T Consensus        80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------~~~~~~~~  143 (179)
T cd01890          80 FSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------PERVKQQI  143 (179)
T ss_pred             hHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------HHHHHHHH
Confidence            999999999999999999999998777665 44543332   378999999999986432            23344566


Q ss_pred             HHHhCCc--EEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          146 RKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       146 ~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      ++.+++.  +++++||++|.|++++|+++.+.+.
T Consensus       144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            7777652  4899999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.93  E-value=1.3e-25  Score=165.76  Aligned_cols=154  Identities=13%  Similarity=0.112  Sum_probs=118.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|.+++| ||||++++.++.+. .+.||.+... ..+.++  .+.+.+||+||++.++.++..++.++|++++|
T Consensus        17 ~~~i~ivG~~~~G-KTsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v   91 (184)
T smart00178       17 HAKILFLGLDNAG-KTTLLHMLKNDRLA-QHQPTQHPTS-EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL   91 (184)
T ss_pred             cCEEEEECCCCCC-HHHHHHHHhcCCCc-ccCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            5799999999999 99999999988754 3456665432 233444  37789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-----------C
Q 028595           84 FSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-----------G  150 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------~  150 (207)
                      +|+++++++... ..++..+.+. . .+.|+++++||+|+....            ..++..+.....           +
T Consensus        92 vD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------------~~~~i~~~l~l~~~~~~~~~~~~~  158 (184)
T smart00178       92 VDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPYAA------------SEDELRYALGLTNTTGSKGKVGVR  158 (184)
T ss_pred             EECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCC------------CHHHHHHHcCCCcccccccccCCc
Confidence            999999999888 4454444332 2 579999999999986432            444444333211           2


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      ...++++||++++|+++++++|..+
T Consensus       159 ~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      159 PLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             eeEEEEeecccCCChHHHHHHHHhh
Confidence            2358899999999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.5e-24  Score=153.96  Aligned_cols=159  Identities=13%  Similarity=0.115  Sum_probs=127.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..+|+++|-+++| |||+++++..+++... .||+|-..+. +.+.  ++.+.+||.+||++++.+|++|+++++++|||
T Consensus        17 e~~IlmlGLD~AG-KTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV   91 (181)
T KOG0070|consen   17 EMRILMVGLDAAG-KTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV   91 (181)
T ss_pred             eEEEEEEeccCCC-ceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence            5789999999999 9999999998886655 8999855433 3333  68999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh---CCc-EEEEec
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI---GAS-YYIECS  158 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~-~~~e~S  158 (207)
                      .|.+|++.+.++...+...+.+.. .+.|+++.+||.|++..-.            ..+..+.....   +.. .+..|+
T Consensus        92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als------------~~ei~~~L~l~~l~~~~w~iq~~~  159 (181)
T KOG0070|consen   92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS------------AAEITNKLGLHSLRSRNWHIQSTC  159 (181)
T ss_pred             EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC------------HHHHHhHhhhhccCCCCcEEeecc
Confidence            999999999999777777776654 5899999999999987653            22222222222   111 344699


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028595          159 SKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~~  179 (207)
                      |.+|+|+.+.++++...+...
T Consensus       160 a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  160 AISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             ccccccHHHHHHHHHHHHhcc
Confidence            999999999999999887543

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.93  E-value=4.7e-25  Score=152.82  Aligned_cols=163  Identities=16%  Similarity=0.167  Sum_probs=129.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ....|.++|.+|+| |||++++|.+.. .+...||.|-. -+.+.++  .+++++||++||...++.|++||..+|+.|+
T Consensus        15 rE~riLiLGLdNsG-KTti~~kl~~~~-~~~i~pt~gf~-Iktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   15 REVRILILGLDNSG-KTTIVKKLLGED-TDTISPTLGFQ-IKTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             heeEEEEEecCCCC-chhHHHHhcCCC-ccccCCcccee-eEEEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            46789999999999 999999998776 55667777633 2234444  4889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCccc-CHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPV-TTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |+|.+|+..+++....+...+.... .+.|+++++||.|++..-..       ..+ ..-+.+.++++..+ +.+.|||.
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~-------~~i~~~~~L~~l~ks~~~-~l~~cs~~  161 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSL-------EEISKALDLEELAKSHHW-RLVKCSAV  161 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCH-------HHHHHhhCHHHhccccCc-eEEEEecc
Confidence            9999999999998665655555443 68999999999999743211       000 11235556666777 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      +|+++.+.+.|++..+..
T Consensus       162 tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  162 TGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             ccccHHHHHHHHHHHHHH
Confidence            999999999999998876

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=4.1e-25  Score=158.37  Aligned_cols=150  Identities=25%  Similarity=0.291  Sum_probs=117.8

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   86 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   86 (207)
                      |+++|.+++| ||||++++.+..+...+.||.+..+.. +..++  +.+.+||+||++.++.++..++.++|++++|+|+
T Consensus         2 i~i~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSG-KTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCC-HHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999 999999999999998999998766542 33333  7899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH-----HHhCCcEEEEecc
Q 028595           87 VSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIECSS  159 (207)
Q Consensus        87 ~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa  159 (207)
                      ++.+++... ..|+..+... . +++|+++++||.|+.+...            ..+.....     ...+. +++++||
T Consensus        78 ~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa  143 (159)
T cd04159          78 ADRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDREV-SCYSISC  143 (159)
T ss_pred             CCHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCce-EEEEEEe
Confidence            999998887 4444444322 2 5789999999999865432            22221111     11223 7899999


Q ss_pred             CCCCCHHHHHHHHHH
Q 028595          160 KTQQNVKAVFDAAIK  174 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~  174 (207)
                      +++.|++++|+++++
T Consensus       144 ~~~~gi~~l~~~l~~  158 (159)
T cd04159         144 KEKTNIDIVLDWLIK  158 (159)
T ss_pred             ccCCChHHHHHHHhh
Confidence            999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.93  E-value=1.3e-24  Score=149.42  Aligned_cols=165  Identities=22%  Similarity=0.379  Sum_probs=146.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..||.++|+++.| ||||+-.+.++.+.+++..+.|..+ .+.+.+.|..+.+.|||.+|++++..+.+...+++-+++|
T Consensus        20 slkv~llGD~qiG-KTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   20 SLKVGLLGDAQIG-KTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             EEEEEeecccccC-ceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            5799999999999 9999999999999999999999998 6689999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc----cCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR----EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      +||++.++++..+ ..|+.+.+..+...--++||+|.|+.    ++.++         -...+++.+++.++. +.+.+|
T Consensus        99 mFDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~---------~I~~qar~YAk~mnA-sL~F~S  167 (205)
T KOG1673|consen   99 MFDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQE---------TISRQARKYAKVMNA-SLFFCS  167 (205)
T ss_pred             EEecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhhhcCCHHHHH---------HHHHHHHHHHHHhCC-cEEEee
Confidence            9999999999999 89999998887655557899999953    22222         134678999999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCC
Q 028595          159 SKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +....|++++|..+..++.+-+
T Consensus       168 ts~sINv~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  168 TSHSINVQKIFKIVLAKLFNLP  189 (205)
T ss_pred             ccccccHHHHHHHHHHHHhCCc
Confidence            9999999999999999987654

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=6.4e-25  Score=166.20  Aligned_cols=175  Identities=26%  Similarity=0.380  Sum_probs=139.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|..++| ||||+++|..+.+...+.+|++..+.. .....+..+.+.+|||+|++.++.++..|+.+++++++|
T Consensus         6 ~kivv~G~~g~G-KTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           6 FKIVVLGDGGVG-KTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             EEEEEEcCCCcc-HHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            799999999999 999999999999999999999887755 444444588999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCC--cccCHHHHHHHHHHh---CCcEEEEe
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQI---GASYYIEC  157 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~---~~~~~~e~  157 (207)
                      ||.++..++.++...|...+.... .+.|+++++||+|+.............  +..........+...   .. .++++
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  163 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLET  163 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeEe
Confidence            999998888778799999998877 479999999999998764310000000  011233333333322   33 48999


Q ss_pred             ccC--CCCCHHHHHHHHHHHHhCCCc
Q 028595          158 SSK--TQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       158 Sa~--~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      |++  ++.+++++|..+++.+.....
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence            999  999999999999999976543

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=7.7e-26  Score=160.04  Aligned_cols=136  Identities=24%  Similarity=0.215  Sum_probs=105.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCc-----cccccccceecCCcE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-----DYNRLRPLSYRGADV   79 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-----~~~~~~~~~~~~~d~   79 (207)
                      .||+++|.+++| ||||+++|.++.+  .+.+|.+..+.           -.+|||||+.     .+..+.. .++++|+
T Consensus         1 ~kv~liG~~~vG-KSsL~~~l~~~~~--~~~~t~~~~~~-----------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~   65 (142)
T TIGR02528         1 KRIMFIGSVGCG-KTTLTQALQGEEI--LYKKTQAVEYN-----------DGAIDTPGEYVENRRLYSALIV-TAADADV   65 (142)
T ss_pred             CeEEEECCCCCC-HHHHHHHHcCCcc--ccccceeEEEc-----------CeeecCchhhhhhHHHHHHHHH-HhhcCCE
Confidence            389999999999 9999999998865  34555543321           1689999983     3444433 4789999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +++|||++++.++...  .|...+     ..|+++|+||+|+.+..           ...++++++++..+..+++++||
T Consensus        66 vilv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa  127 (142)
T TIGR02528        66 IALVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISS  127 (142)
T ss_pred             EEEEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEec
Confidence            9999999999998653  454432     34999999999986532           25677888888887668999999


Q ss_pred             CCCCCHHHHHHHHH
Q 028595          160 KTQQNVKAVFDAAI  173 (207)
Q Consensus       160 ~~~~~i~~~f~~i~  173 (207)
                      ++|.|++++|+++.
T Consensus       128 ~~~~gi~~l~~~l~  141 (142)
T TIGR02528       128 VDEQGLEALVDYLN  141 (142)
T ss_pred             CCCCCHHHHHHHHh
Confidence            99999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.92  E-value=3.3e-24  Score=146.05  Aligned_cols=155  Identities=21%  Similarity=0.247  Sum_probs=129.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +..+.++|-.++| ||||+|.+..+.+..+..||.|-+.   ..++..++.+.+||.|||.+++++|+.|+++++++++|
T Consensus        20 emel~lvGLq~sG-Ktt~Vn~ia~g~~~edmiptvGfnm---rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSG-KTTLVNVIARGQYLEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCC-cceEEEEEeeccchhhhccccccee---EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            3467899999999 9999999999999999999998543   33445578999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-------cEEE
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYYI  155 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~  155 (207)
                      .|+.+++.+.....++..++.+.. .++|+++.|||.|+++.-..               +.+..++|.       .-+|
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~---------------~~li~rmgL~sitdREvcC~  160 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK---------------IALIERMGLSSITDREVCCF  160 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH---------------HHHHHHhCccccccceEEEE
Confidence            999999988887677777776655 68999999999999765431               334444543       2478


Q ss_pred             EeccCCCCCHHHHHHHHHHHHh
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      .+|+++..|++.+.+|+++...
T Consensus       161 siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  161 SISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             EEEEcCCccHHHHHHHHHHHhh
Confidence            9999999999999999998754

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.92  E-value=2.6e-24  Score=156.30  Aligned_cols=155  Identities=18%  Similarity=0.127  Sum_probs=106.7

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCcc-ccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccccc---------ceec
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP---------LSYR   75 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~---------~~~~   75 (207)
                      +|+++|.+++| ||||+++|++..+... +..+........+  +...+.+.+|||||+.......+         ....
T Consensus         2 ~i~~~G~~~~G-Kssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           2 TLVIAGYPNVG-KSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             eEEEEcCCCCC-HHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            79999999999 9999999998876422 2111111111112  22347899999999843211000         0112


Q ss_pred             CCcEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           76 GADVFVLAFSLVSRASY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      .+|++++|+|+++..++  ... ..|+..+....++.|+++|+||.|+.+....            ...+++++..+. +
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~------------~~~~~~~~~~~~-~  144 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFEDL------------SEIEEEEELEGE-E  144 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhhH------------HHHHHhhhhccC-c
Confidence            36899999999987653  444 5677777655468999999999999765431            224555555555 8


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHh
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      ++++||++|.|++++|+++.+.++
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~~~  168 (168)
T cd01897         145 VLKISTLTEEGVDEVKNKACELLL  168 (168)
T ss_pred             eEEEEecccCCHHHHHHHHHHHhC
Confidence            999999999999999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.92  E-value=3.2e-24  Score=147.12  Aligned_cols=170  Identities=21%  Similarity=0.232  Sum_probs=145.1

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEE-CCeEEEEEEEeCCCCccc-cccccceecC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDY-NRLRPLSYRG   76 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-~~~~~~~~~~   76 (207)
                      |..-.||+++|..+|| ||+++.++..++.  ..++.||+.+.|...+.- .|..-.+.++||.|-..+ ..+-++|++-
T Consensus         6 mGk~~kVvVcG~k~VG-KTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~   84 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVG-KTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF   84 (198)
T ss_pred             hCcceEEEEECCcccc-HHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence            5667899999999999 9999999987764  356889999988665544 345678999999997666 5678899999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           77 ADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        77 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      +|++++|||..|++||+.+ .-+...|.+..  ..+|+++.+||+|+.+..++          ..+-++.||++-.. ..
T Consensus        85 aDafVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v----------d~d~A~~Wa~rEkv-kl  152 (198)
T KOG3883|consen   85 ADAFVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV----------DMDVAQIWAKREKV-KL  152 (198)
T ss_pred             CceEEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchhc----------CHHHHHHHHhhhhe-eE
Confidence            9999999999999999988 66666776544  47999999999999887774          88999999999998 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKPPQKQ  183 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~  183 (207)
                      ++++|++..++-+.|..+...+.+++.+.
T Consensus       153 ~eVta~dR~sL~epf~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  153 WEVTAMDRPSLYEPFTYLASRLHQPQSKS  181 (198)
T ss_pred             EEEEeccchhhhhHHHHHHHhccCCcccc
Confidence            99999999999999999999998776543

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.91  E-value=7.6e-24  Score=151.34  Aligned_cols=156  Identities=29%  Similarity=0.419  Sum_probs=126.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||++++..+.+...+.++.+..+.. .+..++..+.+.+||+||+..+..++..+.+.+++++.
T Consensus         1 ~~ki~~~G~~~~G-Kstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   79 (161)
T TIGR00231         1 EIKIVIVGDPNVG-KSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR   79 (161)
T ss_pred             CeEEEEECCCCCC-HHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence            3699999999999 999999999998777777888777644 46777777899999999999999988888999999999


Q ss_pred             EEeCCCh-hhHHHHHHHHHHHHhhcCC-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSR-ASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~-~s~~~~~~~~~~~i~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      ++|+... .++......|...+..... +.|+++++||.|+....            ............+..+++++||.
T Consensus        80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~sa~  147 (161)
T TIGR00231        80 VFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK------------LKTHVAFLFAKLNGEPIIPLSAE  147 (161)
T ss_pred             EEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch------------hhHHHHHHHhhccCCceEEeecC
Confidence            9999888 7777764466666665554 89999999999996543            12333333444444589999999


Q ss_pred             CCCCHHHHHHHH
Q 028595          161 TQQNVKAVFDAA  172 (207)
Q Consensus       161 ~~~~i~~~f~~i  172 (207)
                      ++.|+.++|+++
T Consensus       148 ~~~gv~~~~~~l  159 (161)
T TIGR00231       148 TGKNIDSAFKIV  159 (161)
T ss_pred             CCCCHHHHHHHh
Confidence            999999999986

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01898 Obg Obg subfamily

Probab=99.91  E-value=3.7e-24  Score=155.68  Aligned_cols=155  Identities=16%  Similarity=0.134  Sum_probs=109.7

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCeEEEEEEEeCCCCc----ccccccccee---cCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLSY---RGA   77 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~---~~~   77 (207)
                      .|+++|.+++| ||||++++.+..... .+..+........+..++ ...+.+|||||+.    ....+...++   ..+
T Consensus         2 ~v~ivG~~~~G-KStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAG-KSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCC-HHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            68999999999 999999998765321 111111111111223333 2478999999963    2223333433   459


Q ss_pred             cEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-CCc
Q 028595           78 DVFVLAFSLVSR-ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GAS  152 (207)
Q Consensus        78 d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~  152 (207)
                      |++++|+|++++ ++++.+ ..|.+.+....   ...|+++|+||+|+.+...           ..+..+.+.... +. 
T Consensus        80 d~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~-  146 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----------LFELLKELLKELWGK-  146 (170)
T ss_pred             CEEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-----------hHHHHHHHHhhCCCC-
Confidence            999999999999 788888 78888876654   3689999999999866543           334455555553 54 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHH
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +++++||+++.|++++|+++.+.
T Consensus       147 ~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         147 PVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CEEEEecCCCCCHHHHHHHHHhh
Confidence            89999999999999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04155 Arl3 Arl3 subfamily

Probab=99.91  E-value=1.2e-23  Score=153.61  Aligned_cols=150  Identities=19%  Similarity=0.268  Sum_probs=114.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .++|+++|.+++| ||||++++.+..+. .+.||.+..+ ..+..++  ..+.+||++|+..+...+..+++++|++++|
T Consensus        14 ~~~v~i~G~~g~G-KStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v   88 (173)
T cd04155          14 EPRILILGLDNAG-KTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV   88 (173)
T ss_pred             ccEEEEEccCCCC-HHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            5789999999999 99999999987653 4567766433 2344444  6789999999998888888899999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-------cEE
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYY  154 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~  154 (207)
                      +|+++..++... ..++..+....  .++|+++++||.|+.+..            ..   +.+.+.++.       .++
T Consensus        89 ~D~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~---~~i~~~l~~~~~~~~~~~~  152 (173)
T cd04155          89 IDSADKKRLEEA-GAELVELLEEEKLAGVPVLVFANKQDLATAA------------PA---EEIAEALNLHDLRDRTWHI  152 (173)
T ss_pred             EeCCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CH---HHHHHHcCCcccCCCeEEE
Confidence            999999999887 44444433222  479999999999986533            11   223333332       146


Q ss_pred             EEeccCCCCCHHHHHHHHHH
Q 028595          155 IECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      +++||++|+|++++|++|++
T Consensus       153 ~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         153 QACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEeECCCCCCHHHHHHHHhc
Confidence            79999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.90  E-value=2.4e-23  Score=150.30  Aligned_cols=152  Identities=14%  Similarity=0.080  Sum_probs=103.4

Q ss_pred             eEEEEecccccceeeeeeeccCCC---CCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS---SIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~---~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      .|+++|.+++| ||||+++|++..   +...+.++.+... ...+..++ ...+.+|||||++++......++.++|+++
T Consensus         2 ~i~i~G~~~~G-Kssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           2 IIGTAGHIDHG-KTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             EEEEEecCCCC-HHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            58999999999 999999998643   2223333332222 12333332 357899999999988776677888999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH---hCCcEEE
Q 028595           82 LAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ---IGASYYI  155 (207)
Q Consensus        82 ~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~  155 (207)
                      +|+|+++   .++.+.+ . +   +... ...|+++++||+|+.+....        ....++..++.+.   .+. +++
T Consensus        80 ~V~d~~~~~~~~~~~~~-~-~---~~~~-~~~~~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~  144 (164)
T cd04171          80 LVVAADEGIMPQTREHL-E-I---LELL-GIKRGLVVLTKADLVDEDWL--------ELVEEEIRELLAGTFLADA-PIF  144 (164)
T ss_pred             EEEECCCCccHhHHHHH-H-H---HHHh-CCCcEEEEEECccccCHHHH--------HHHHHHHHHHHHhcCcCCC-cEE
Confidence            9999987   4444433 1 2   2221 23499999999999654210        0022344444444   234 899


Q ss_pred             EeccCCCCCHHHHHHHHHH
Q 028595          156 ECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~  174 (207)
                      ++||+++.|++++|+.+..
T Consensus       145 ~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         145 PVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEeCCCCcCHHHHHHHHhh
Confidence            9999999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.9e-23  Score=165.34  Aligned_cols=164  Identities=18%  Similarity=0.157  Sum_probs=119.4

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----ccccccc---ee
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPL---SY   74 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~---~~   74 (207)
                      ....|++||.+++| ||||++++++.+.. ..|.-|+.......+.++ ....+.+||+||.-.    ...+...   ++
T Consensus       157 ~~adVglVG~PNaG-KSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhi  234 (335)
T PRK12299        157 LLADVGLVGLPNAG-KSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHI  234 (335)
T ss_pred             ccCCEEEEcCCCCC-HHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence            35679999999999 99999999976532 334333322222333332 234578999999632    2223333   45


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  151 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  151 (207)
                      ..++++++|+|+++.++++.+ ..|..++..+.+   ++|+++|+||+|+.+....          ..+..+.+++..+.
T Consensus       235 e~a~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~----------~~~~~~~~~~~~~~  303 (335)
T PRK12299        235 ERTRLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEEE----------REKRAALELAALGG  303 (335)
T ss_pred             hhcCEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchhH----------HHHHHHHHHHhcCC
Confidence            679999999999998888888 789888877653   7899999999999765432          33445556666666


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          152 SYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       152 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                       +++++||++++|++++|+++.+.+...+
T Consensus       304 -~i~~iSAktg~GI~eL~~~L~~~l~~~~  331 (335)
T PRK12299        304 -PVFLISAVTGEGLDELLRALWELLEEAR  331 (335)
T ss_pred             -CEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence             8999999999999999999998876543

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.9e-22  Score=135.59  Aligned_cols=158  Identities=14%  Similarity=0.139  Sum_probs=125.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      +..+|+++|-..+| |||+++.++.+. .....||+|-.... +  ..+++.+++||.+|+++.+.+|++||+++.++||
T Consensus        16 KE~~ilmlGLd~aG-KTtiLyKLkl~~-~~~~ipTvGFnvet-V--tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAG-KTTILYKLKLGQ-SVTTIPTVGFNVET-V--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCC-ceehhhHHhcCC-CcccccccceeEEE-E--EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            35689999999999 999999998776 44567888744322 2  2357899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh---CCc-EEEEe
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI---GAS-YYIEC  157 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~-~~~e~  157 (207)
                      |.|..+++..+++..++...|.+.- .+.|++|.+||.|++...            ...+++.+.+.-   +-. ....+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~------------~pqei~d~leLe~~r~~~W~vqp~  158 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM------------KPQEIQDKLELERIRDRNWYVQPS  158 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc------------CHHHHHHHhccccccCCccEeecc
Confidence            9999999999999777777775543 589999999999998775            445555444322   111 34469


Q ss_pred             ccCCCCCHHHHHHHHHHHHh
Q 028595          158 SSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      ||.+|+++.+.|.|+...+.
T Consensus       159 ~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  159 CALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             ccccchhHHHHHHHHHhhcc
Confidence            99999999999999987653

>cd01878 HflX HflX subfamily

Probab=99.89  E-value=6.3e-23  Score=153.73  Aligned_cols=152  Identities=16%  Similarity=0.119  Sum_probs=108.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcc--ccCceeeeeeeEEEECCeEEEEEEEeCCCCccc---------cccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD--YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~   72 (207)
                      ..+|+++|.+++| ||||++++++..+...  +.+|... ....+..++. ..+.+|||||....         .... .
T Consensus        41 ~~~I~iiG~~g~G-KStLl~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          41 IPTVALVGYTNAG-KSTLFNALTGADVYAEDQLFATLDP-TTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             CCeEEEECCCCCC-HHHHHHHHhcchhccCCccceeccc-eeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            4699999999999 9999999998864322  2233322 2223344442 36889999997332         1111 1


Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  151 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  151 (207)
                      .+.++|++++|+|++++.+.... ..|...+.... .++|+++|+||+|+.+....            .   .++...+.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~------------~---~~~~~~~~  180 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEEL------------E---ERLEAGRP  180 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHHH------------H---HHhhcCCC
Confidence            35689999999999999888876 66777776544 47899999999999655421            1   33444444


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHH
Q 028595          152 SYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       152 ~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                       +++++||+++.|++++|++|.+.+
T Consensus       181 -~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         181 -DAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             -ceEEEEcCCCCCHHHHHHHHHhhC
Confidence             899999999999999999997653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=7.3e-23  Score=145.28  Aligned_cols=162  Identities=23%  Similarity=0.326  Sum_probs=140.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCe-EEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+|++++|+-+.| ||++++++..+.|...|.+|+|......+..++. .+.+..|||+|+|.+..+...|+-.+.+.|+
T Consensus        10 ~fklvlvGdgg~g-Ktt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen   10 TFKLVLVGDGGTG-KTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             eEEEEEecCCccc-ccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            5789999999999 9999999999999999999999887665555554 5999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      +||++.+-.+.++ ..|...+.+.+.++|+++.|||.|.....            .....-.+-+..++ .|+++||+++
T Consensus        89 mFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn  154 (216)
T KOG0096|consen   89 MFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSN  154 (216)
T ss_pred             Eeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeecccc
Confidence            9999999999999 89999998888899999999999975543            12223345555666 8999999999


Q ss_pred             CCHHHHHHHHHHHHhCCC
Q 028595          163 QNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~~  180 (207)
                      .|++..|.++++++...+
T Consensus       155 ~NfekPFl~LarKl~G~p  172 (216)
T KOG0096|consen  155 YNFERPFLWLARKLTGDP  172 (216)
T ss_pred             cccccchHHHhhhhcCCC
Confidence            999999999999987543

>TIGR00436 era GTP-binding protein Era

Probab=99.89  E-value=1.3e-22  Score=158.19  Aligned_cols=156  Identities=16%  Similarity=0.079  Sum_probs=111.4

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCc--cccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc-c-------cccceec
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-R-------LRPLSYR   75 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~-------~~~~~~~   75 (207)
                      +|+++|.+|+| ||||+|+|++.++..  ....|+..... .+...+ ..++.+|||||..... .       ....++.
T Consensus         2 ~V~liG~pnvG-KSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVG-KSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            79999999999 999999999987542  23334333222 222222 3568999999975431 1       1235678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                      ++|++++|+|+++..+..   ..++..+..  .+.|+++|+||+|+.+...           ..+....++...+..+++
T Consensus        79 ~aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~v~  142 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKFKDK-----------LLPLIDKYAILEDFKDIV  142 (270)
T ss_pred             hCCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCCHHH-----------HHHHHHHHHhhcCCCceE
Confidence            999999999999876664   234444443  3789999999999964332           334555666666655789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++||++|.|++++++.+.+.+...+
T Consensus       143 ~iSA~~g~gi~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       143 PISALTGDNTSFLAAFIEVHLPEGP  167 (270)
T ss_pred             EEecCCCCCHHHHHHHHHHhCCCCC
Confidence            9999999999999999999886543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.89  E-value=2.4e-22  Score=144.29  Aligned_cols=147  Identities=14%  Similarity=0.118  Sum_probs=108.3

Q ss_pred             EEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc------ccceec--CCcE
Q 028595            9 CLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSYR--GADV   79 (207)
Q Consensus         9 iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~~--~~d~   79 (207)
                      ++|.+++| ||||++++++......+.++.+... ...+..++  ..+.+|||||++.+...      +..++.  ++|+
T Consensus         1 l~G~~~~G-Kssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~   77 (158)
T cd01879           1 LVGNPNVG-KTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL   77 (158)
T ss_pred             CCCCCCCC-HHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence            58999999 9999999998864433334433333 44566665  46899999999876643      455554  8999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +++|+|.++.++..    .+...+..  .++|+++++||+|+.+...           .....+.+++.++. +++++||
T Consensus        78 vi~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~-~~~~iSa  139 (158)
T cd01879          78 IVNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKRG-----------IKIDLDKLSELLGV-PVVPTSA  139 (158)
T ss_pred             EEEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhccccc-----------chhhHHHHHHhhCC-CeEEEEc
Confidence            99999999865533    23333333  2799999999999976543           22335677777887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028595          160 KTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~  176 (207)
                      .++.|+.++|+++.+.+
T Consensus       140 ~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         140 RKGEGIDELKDAIAELA  156 (158)
T ss_pred             cCCCCHHHHHHHHHHHh
Confidence            99999999999998753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.88  E-value=3.3e-22  Score=145.08  Aligned_cols=158  Identities=14%  Similarity=0.131  Sum_probs=109.1

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .|+++|.+++| ||||+++|..+.+...+.++....+. ..+..+ +....+.+|||||++.+..++..++..+|++++|
T Consensus         2 ~i~iiG~~~~G-Ktsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v   80 (168)
T cd01887           2 VVTVMGHVDHG-KTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV   80 (168)
T ss_pred             EEEEEecCCCC-HHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence            48999999999 99999999988876654444433332 233332 2357889999999999988888889999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH----HhC-CcEEEEec
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK----QIG-ASYYIECS  158 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~-~~~~~e~S  158 (207)
                      +|+++....+..  ..+..+..  .+.|+++|+||+|+......         ...+....+..    ..+ ..+++++|
T Consensus        81 ~d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (168)
T cd01887          81 VAADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANPE---------RVKNELSELGLQGEDEWGGDVQIVPTS  147 (168)
T ss_pred             EECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccHH---------HHHHHHHHhhccccccccCcCcEEEee
Confidence            999985332222  12222332  37899999999998643210         01111222211    111 13789999


Q ss_pred             cCCCCCHHHHHHHHHHHHh
Q 028595          159 SKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~  177 (207)
                      |.+|+|++++|+++.+...
T Consensus       148 a~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         148 AKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             cccCCCHHHHHHHHHHhhh
Confidence            9999999999999987643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.88  E-value=4.7e-22  Score=158.25  Aligned_cols=159  Identities=19%  Similarity=0.179  Sum_probs=115.4

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc----cccccce---e
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---Y   74 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~~~~---~   74 (207)
                      ....|+++|.+++| ||||++++++.+. ...|.-|........+.+++ ...+.+||+||....    ..+...+   +
T Consensus       156 ~~adV~lvG~pnaG-KSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhi  233 (329)
T TIGR02729       156 LLADVGLVGLPNAG-KSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHI  233 (329)
T ss_pred             ccccEEEEcCCCCC-HHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHH
Confidence            35789999999999 9999999998753 22333332222222334433 356899999997432    2333344   4


Q ss_pred             cCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           75 RGADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                      ..++++++|+|+++.   ++++.+ ..|.+++..+.   .+.|+++|+||+|+.+...           ..+..+.+++.
T Consensus       234 erad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-----------~~~~~~~l~~~  301 (329)
T TIGR02729       234 ERTRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-----------LAELLKELKKA  301 (329)
T ss_pred             HhhCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-----------HHHHHHHHHHH
Confidence            569999999999987   677777 67777776654   4789999999999965532           34456667777


Q ss_pred             hCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595          149 IGASYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       149 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      ++. +++++||++++|++++++++.+.+
T Consensus       302 ~~~-~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       302 LGK-PVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             cCC-cEEEEEccCCcCHHHHHHHHHHHh
Confidence            776 899999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.88  E-value=1.1e-22  Score=151.22  Aligned_cols=146  Identities=11%  Similarity=0.009  Sum_probs=102.8

Q ss_pred             eeEEEEecccccceeeeeeeccC--CCCCccc------------cCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG--RSSIWDY------------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL   69 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~--~~~~~~~------------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~   69 (207)
                      .+|+++|..++| ||||+++|+.  +.+...+            .++.+.++ .....+++..+.+.+|||||++++...
T Consensus         3 r~i~ivG~~~~G-KTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   81 (194)
T cd01891           3 RNIAIIAHVDHG-KTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE   81 (194)
T ss_pred             cEEEEEecCCCC-HHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999 9999999986  4444332            12233333 233445556688999999999999999


Q ss_pred             ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      +..+++++|++++|+|+++.. .... ..++..+..  .++|+++++||+|+.+.+..         ...+++.++...+
T Consensus        82 ~~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~---------~~~~~~~~~~~~~  148 (194)
T cd01891          82 VERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARPE---------EVVDEVFDLFIEL  148 (194)
T ss_pred             HHHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHH---------HHHHHHHHHHHHh
Confidence            999999999999999998742 1222 233333332  37899999999999653321         1234555554332


Q ss_pred             -------CCcEEEEeccCCCCCH
Q 028595          150 -------GASYYIECSSKTQQNV  165 (207)
Q Consensus       150 -------~~~~~~e~Sa~~~~~i  165 (207)
                             ++ +++++||++|.|+
T Consensus       149 ~~~~~~~~~-~iv~~Sa~~g~~~  170 (194)
T cd01891         149 GATEEQLDF-PVLYASAKNGWAS  170 (194)
T ss_pred             CCccccCcc-CEEEeehhccccc
Confidence                   45 8899999999766

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.88  E-value=8.2e-22  Score=139.48  Aligned_cols=152  Identities=34%  Similarity=0.604  Sum_probs=118.1

Q ss_pred             EEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCC
Q 028595            9 CLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV   87 (207)
Q Consensus         9 iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   87 (207)
                      ++|.+++| ||||++++.+... .....+|....+.......+....+.+||+||+..+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~G-KStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVG-KTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCc-HHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            58999999 9999999998876 455666663334556666677899999999999988888888899999999999999


Q ss_pred             ChhhHHHHHHHH--HHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH-HHHHHHHhCCcEEEEeccCCCCC
Q 028595           88 SRASYENVLKKW--IPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQIGASYYIECSSKTQQN  164 (207)
Q Consensus        88 ~~~s~~~~~~~~--~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~e~Sa~~~~~  164 (207)
                      ++.+.... ..|  .........+.|+++++||+|+......          .... ........+ .+++++|+.++.|
T Consensus        80 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~s~~~~~~  147 (157)
T cd00882          80 DRESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERVV----------SEEELAEQLAKELG-VPYFETSAKTGEN  147 (157)
T ss_pred             CHHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccch----------HHHHHHHHHHhhcC-CcEEEEecCCCCC
Confidence            99999988 555  2233333368999999999998765431          2221 333444444 4999999999999


Q ss_pred             HHHHHHHHH
Q 028595          165 VKAVFDAAI  173 (207)
Q Consensus       165 i~~~f~~i~  173 (207)
                      ++++++++.
T Consensus       148 i~~~~~~l~  156 (157)
T cd00882         148 VEELFEELA  156 (157)
T ss_pred             hHHHHHHHh
Confidence            999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK04213 GTP-binding protein; Provisional

Probab=99.88  E-value=1e-22  Score=152.22  Aligned_cols=154  Identities=16%  Similarity=0.098  Sum_probs=104.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCC-----------Cccccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLRPL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~   72 (207)
                      ..+|+++|.+++| ||||+|+|.+..+...+.|+.+.. ...+..+    .+.+|||||           ++.++..+..
T Consensus         9 ~~~i~i~G~~~~G-KSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          9 KPEIVFVGRSNVG-KSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            5699999999999 999999999887655455544221 2233222    588999999           4566666555


Q ss_pred             eec----CCcEEEEEEeCCChhhHHH---------HHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH
Q 028595           73 SYR----GADVFVLAFSLVSRASYEN---------VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT  139 (207)
Q Consensus        73 ~~~----~~d~~i~v~d~~~~~s~~~---------~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~  139 (207)
                      ++.    .++++++|.|.++......         ....+...+..  .++|+++|+||+|+.+..             .
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-------------~  147 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-------------D  147 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------H
Confidence            654    3578888888765322210         00122233332  379999999999985432             2


Q ss_pred             HHHHHHHHHhCCc--------EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          140 AQGEELRKQIGAS--------YYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       140 ~~~~~~~~~~~~~--------~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +.+.++++.++..        +++++||++| |++++|++|.+.+...
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        148 EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            3456666666641        4799999999 9999999999886543

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.88  E-value=1.6e-22  Score=138.75  Aligned_cols=114  Identities=24%  Similarity=0.370  Sum_probs=88.8

Q ss_pred             eEEEEecccccceeeeeeeccCCCCC--ccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ||+++|..++| ||||+++|++..+.  ..+.++.+.++. ....+......+.+||++|++.+...+..++.++|++++
T Consensus         1 kI~V~G~~g~G-KTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il   79 (119)
T PF08477_consen    1 KIVVLGDSGVG-KTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL   79 (119)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred             CEEEECcCCCC-HHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence            79999999999 99999999988865  222333333342 355667777779999999999988888888999999999


Q ss_pred             EEeCCChhhHHHHH--HHHHHHHhhcCCCCcEEEEeeCCC
Q 028595           83 AFSLVSRASYENVL--KKWIPELQHYSPGVPVVLVGTKLD  120 (207)
Q Consensus        83 v~d~~~~~s~~~~~--~~~~~~i~~~~~~~piivv~nK~D  120 (207)
                      |||+++++|++.+.  ..|+..+....+++|+++||||.|
T Consensus        80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   80 VYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999999972  235666666667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK15494 era GTPase Era; Provisional

Probab=99.87  E-value=7.1e-22  Score=158.22  Aligned_cols=156  Identities=12%  Similarity=0.165  Sum_probs=109.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCc--cccCceeeeeeeEEEECCeEEEEEEEeCCCCcc-cccccc-------cee
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRP-------LSY   74 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~-------~~~   74 (207)
                      .+|+++|.++|| ||||+|+|++.++..  ....|........+..++  .++.+|||||... +..+..       .++
T Consensus        53 ~kV~ivG~~nvG-KSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         53 VSVCIIGRPNSG-KSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             eEEEEEcCCCCC-HHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            489999999999 999999999887642  111222222233455555  4679999999843 332221       246


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-CcE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASY  153 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~  153 (207)
                      .++|++++|+|.++  ++......|+..+...  +.|.++|+||+|+.+.             ...++.+++...+ ...
T Consensus       130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~~~~~~  192 (339)
T PRK15494        130 HSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTENHPDSL  192 (339)
T ss_pred             hhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhcCCCcE
Confidence            78999999999765  4444434556665543  5677889999998532             2345556665544 247


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++++||++|.|++++|+++...+.+.+
T Consensus       193 i~~iSAktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        193 LFPISALSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             EEEEeccCccCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999887653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=6.2e-22  Score=165.28  Aligned_cols=175  Identities=20%  Similarity=0.226  Sum_probs=117.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC-ccccCcee-eeeeeEEEECCeEEEEEEEeCCCCcc--------ccccccce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~   73 (207)
                      +.+|+++|.++|| ||||+|+|+++... ....|.++ +.....+..++.  .+.+|||||.+.        +...+..+
T Consensus        38 ~~~V~IvG~~nvG-KSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         38 LPVVAVVGRPNVG-KSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCEEEEEcCCCCC-HHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            4689999999999 99999999987642 22233322 222334555554  578999999763        22334567


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      ++.+|++|+|+|+++..+...  ..+...+..  .+.|+++|+||+|+....             .+..+.+  .++...
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~~~-------------~~~~~~~--~~g~~~  175 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDERGE-------------ADAAALW--SLGLGE  175 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCccc-------------hhhHHHH--hcCCCC
Confidence            889999999999999866654  345555554  479999999999985422             1122223  234434


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEeeecCCccc
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLV  204 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~  204 (207)
                      .+++||++|.|++++|+++++.+.+.......    ...-......|++.+
T Consensus       176 ~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~----~~~~~kI~iiG~~nv  222 (472)
T PRK03003        176 PHPVSALHGRGVGDLLDAVLAALPEVPRVGSA----SGGPRRVALVGKPNV  222 (472)
T ss_pred             eEEEEcCCCCCcHHHHHHHHhhcccccccccc----cccceEEEEECCCCC
Confidence            57999999999999999999988653221110    112234456787765

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.87  E-value=8.2e-22  Score=167.65  Aligned_cols=160  Identities=17%  Similarity=0.151  Sum_probs=120.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC-------CCccccCc------eeeeee-eEEEE-----CCeEEEEEEEeCCCCc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS-------SIWDYIPT------VFDNFS-ANVVA-----EGTTVNLGLWDTAGQE   64 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~-------~~~~~~~t------~~~~~~-~~~~~-----~~~~~~l~i~D~~G~~   64 (207)
                      ..+++++|..++| ||||+++|+...       +...+..+      .|.++. ..+.+     ++..+.+++|||||++
T Consensus         3 iRNi~IIGh~d~G-KTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~   81 (595)
T TIGR01393         3 IRNFSIIAHIDHG-KSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   81 (595)
T ss_pred             eeEEEEECCCCCC-HHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence            4689999999999 999999998642       22223222      133332 22222     5677999999999999


Q ss_pred             cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH
Q 028595           65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  144 (207)
Q Consensus        65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~  144 (207)
                      +|...+..+++.+|++|+|+|+++..+.+.. ..|...+.   .++|+++|+||+|+....            ..+..++
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~e  145 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKE  145 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHH
Confidence            9999999999999999999999997777766 45544443   378999999999986432            2233455


Q ss_pred             HHHHhCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          145 LRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       145 ~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +.+.++..  .++++||++|.|++++|+++++.+..+.
T Consensus       146 l~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       146 IEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             HHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            66666652  4899999999999999999999887654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=7.5e-22  Score=164.78  Aligned_cols=159  Identities=19%  Similarity=0.166  Sum_probs=112.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----------ccccc-
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----------YNRLR-   70 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~-   70 (207)
                      ..||+++|.+++| ||||+|+|++...  ...+..|..+.....+..++..  +.+|||||..+          +..+. 
T Consensus       211 ~~kI~iiG~~nvG-KSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        211 PRRVALVGKPNVG-KSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            4799999999999 9999999998864  2333344334445566677755  46999999532          22221 


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      ..+++++|++++|+|+++..+++++  .++..+..  .+.|+++|+||+|+.+....        .....+.........
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~~--------~~~~~~i~~~l~~~~  355 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDRR--------YYLEREIDRELAQVP  355 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhHH--------HHHHHHHHHhcccCC
Confidence            2356899999999999999888886  45555543  47999999999999653210        001122222222233


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      ..+++++||++|.|++++|+.+.+.+.
T Consensus       356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        356 WAPRVNISAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            348999999999999999999998775

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=1.2e-21  Score=140.42  Aligned_cols=146  Identities=19%  Similarity=0.159  Sum_probs=104.6

Q ss_pred             EEEecccccceeeeeeeccCCC--CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc--------cccceecCC
Q 028595            8 ACLFATQVTSFLLYVLSVSGRS--SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYRGA   77 (207)
Q Consensus         8 ~iiG~~~~GgKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~~~   77 (207)
                      +++|.+++| ||||++++++.+  +...+.++..+........++  ..+.+|||||...+..        .+..++.++
T Consensus         1 ~l~G~~~~G-Kssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVG-KSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCC-HHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            579999999 999999999875  233444444333344444454  6789999999887544        234567889


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595           78 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  157 (207)
Q Consensus        78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (207)
                      |++++|+|..+..+....  .+...+...  +.|+++|+||+|+.+...           .    ......++..+++++
T Consensus        78 d~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~-----------~----~~~~~~~~~~~~~~~  138 (157)
T cd01894          78 DVILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED-----------E----AAEFYSLGFGEPIPI  138 (157)
T ss_pred             CEEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH-----------H----HHHHHhcCCCCeEEE
Confidence            999999999876555443  333444332  699999999999965432           1    222334565578999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028595          158 SSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~  175 (207)
                      |++++.|++++|+++++.
T Consensus       139 Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         139 SAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             ecccCCCHHHHHHHHHhh
Confidence            999999999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.86  E-value=1.8e-21  Score=160.34  Aligned_cols=150  Identities=19%  Similarity=0.159  Sum_probs=114.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc--------ccce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~   73 (207)
                      ..||+++|.+++| ||||+|+|++..  +...+..|..+.+...+.++|  +.+.+|||||.......        ...+
T Consensus       203 g~kVvIvG~~nvG-KSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       203 GFKLAIVGSPNVG-KSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             CCEEEEECCCCCc-HHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            4799999999999 999999999875  344555555455566777777  45689999998655432        2357


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      ++++|++++|+|++++.+++..   |+..+..  .+.|+++|+||+|+.+.                +...+++.++. +
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~  337 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N  337 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence            8899999999999998887653   5555433  37899999999998532                12345566676 7


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++++||++ .||+++|+.+.+.+...
T Consensus       338 ~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       338 SSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             eEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            89999998 69999999999887643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.86  E-value=8.7e-22  Score=141.75  Aligned_cols=143  Identities=15%  Similarity=0.091  Sum_probs=102.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc----cceecCCcEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----PLSYRGADVF   80 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----~~~~~~~d~~   80 (207)
                      .+|+++|.+++| ||||+|++.+.. . ...+|.+..+      ++.    .+|||||+......+    ...+.++|++
T Consensus         2 ~~i~~iG~~~~G-Kstl~~~l~~~~-~-~~~~~~~v~~------~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~i   68 (158)
T PRK15467          2 KRIAFVGAVGAG-KTTLFNALQGNY-T-LARKTQAVEF------NDK----GDIDTPGEYFSHPRWYHALITTLQDVDML   68 (158)
T ss_pred             cEEEEECCCCCC-HHHHHHHHcCCC-c-cCccceEEEE------CCC----CcccCCccccCCHHHHHHHHHHHhcCCEE
Confidence            389999999999 999999987653 1 1123333222      221    269999973222111    1236789999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-cEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa  159 (207)
                      ++|+|+++.+++..   .|+..+   ..+.|+++++||+|+.+.             ..+.+.++++.++. .|++++||
T Consensus        69 l~v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~-------------~~~~~~~~~~~~~~~~p~~~~Sa  129 (158)
T PRK15467         69 IYVHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA-------------DVAATRKLLLETGFEEPIFELNS  129 (158)
T ss_pred             EEEEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc-------------cHHHHHHHHHHcCCCCCEEEEEC
Confidence            99999999877633   333333   236799999999998542             44567788888875 38999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|+|++++|+.+.+.+.+.
T Consensus       130 ~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        130 HDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             CCccCHHHHHHHHHHhchhh
Confidence            99999999999998777543

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.86  E-value=2.4e-21  Score=155.47  Aligned_cols=151  Identities=18%  Similarity=0.164  Sum_probs=107.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCeEEEEEEEeCCCCcc---------ccccccce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~   73 (207)
                      ..+|+++|.+|+| ||||+|+|++..... .+..|..+.....+.+++ ...+.+|||+|..+         +.+.. ..
T Consensus       189 ~~~ValvG~~NvG-KSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       189 VPTVALVGYTNAG-KSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            4789999999999 999999999886432 222233333445566643 24788999999722         22221 24


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  152 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  152 (207)
                      +.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.+...               ...+..  +..
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~---------------v~~~~~--~~~  327 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR---------------IERLEE--GYP  327 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh---------------HHHHHh--CCC
Confidence            7789999999999999888776 56666665543 4789999999999864321               111111  223


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHH
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +++++||++|.|++++++.+.+.
T Consensus       328 ~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       328 EAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CEEEEEccCCCCHHHHHHHHHhh
Confidence            68999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.85  E-value=2.2e-21  Score=141.66  Aligned_cols=153  Identities=18%  Similarity=0.187  Sum_probs=104.2

Q ss_pred             EEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----ccccc---cceecCCcEE
Q 028595            9 CLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLR---PLSYRGADVF   80 (207)
Q Consensus         9 iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~---~~~~~~~d~~   80 (207)
                      ++|.+++| ||||+|++.+... ...+..+........+..++ ...+.+|||||...    .+.+.   ..+++++|++
T Consensus         1 iiG~~~~G-KStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVG-KSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCc-HHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            58999999 9999999998864 22333332222222344441 35679999999642    22232   2346789999


Q ss_pred             EEEEeCCCh------hhHHHHHHHHHHHHhhcC--------CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595           81 VLAFSLVSR------ASYENVLKKWIPELQHYS--------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR  146 (207)
Q Consensus        81 i~v~d~~~~------~s~~~~~~~~~~~i~~~~--------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~  146 (207)
                      ++|+|+++.      .++.+. ..|...+....        .+.|+++|+||+|+......          .........
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~----------~~~~~~~~~  147 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL----------EEELVRELA  147 (176)
T ss_pred             EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH----------HHHHHHHHh
Confidence            999999998      467766 56666665432        37999999999999755431          222223333


Q ss_pred             HHhCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          147 KQIGASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       147 ~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      ...+. +++++||+++.|++++++++.+.
T Consensus       148 ~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         148 LEEGA-EVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             cCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence            33444 79999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.85  E-value=1.3e-21  Score=138.73  Aligned_cols=147  Identities=18%  Similarity=0.190  Sum_probs=103.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc------cccccee--c
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSY--R   75 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~--~   75 (207)
                      ++|+++|.+|+| ||||+|+|++.+......|..+.+. ...+..++  ..+.++|+||-....      .....++  .
T Consensus         1 i~ialvG~PNvG-KStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~   77 (156)
T PF02421_consen    1 IRIALVGNPNVG-KSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSE   77 (156)
T ss_dssp             -EEEEEESTTSS-HHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCC-HHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence            489999999999 9999999999985433334433333 44666666  567899999943322      2233444  5


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                      ..|+++.|.|.++.+.-.++    ..++.+.  ++|+++++||+|..+...           ...+...+++.+|+ |.+
T Consensus        78 ~~D~ii~VvDa~~l~r~l~l----~~ql~e~--g~P~vvvlN~~D~a~~~g-----------~~id~~~Ls~~Lg~-pvi  139 (156)
T PF02421_consen   78 KPDLIIVVVDATNLERNLYL----TLQLLEL--GIPVVVVLNKMDEAERKG-----------IEIDAEKLSERLGV-PVI  139 (156)
T ss_dssp             SSSEEEEEEEGGGHHHHHHH----HHHHHHT--TSSEEEEEETHHHHHHTT-----------EEE-HHHHHHHHTS--EE
T ss_pred             CCCEEEEECCCCCHHHHHHH----HHHHHHc--CCCEEEEEeCHHHHHHcC-----------CEECHHHHHHHhCC-CEE
Confidence            79999999999987655444    2233332  899999999999876654           22357888888998 999


Q ss_pred             EeccCCCCCHHHHHHHH
Q 028595          156 ECSSKTQQNVKAVFDAA  172 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i  172 (207)
                      .+||.+++|++++++.|
T Consensus       140 ~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  140 PVSARTGEGIDELKDAI  156 (156)
T ss_dssp             EEBTTTTBTHHHHHHHH
T ss_pred             EEEeCCCcCHHHHHhhC
Confidence            99999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.85  E-value=4.2e-21  Score=158.96  Aligned_cols=147  Identities=20%  Similarity=0.185  Sum_probs=111.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc--------ccce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~   73 (207)
                      .++|+++|.+++| ||||+|+|++...  ...+..|..+.....+.+++  ..+.+|||||.+.+...        ...+
T Consensus       215 ~~kV~ivG~~nvG-KSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        215 GLKVVIAGRPNVG-KSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3689999999999 9999999998764  33444444444455667776  45789999998765432        2346


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      +.++|++++|+|++++.+++.. ..|..     ..+.|+++|+||+|+.+....          .        ...+. +
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~~----------~--------~~~~~-~  346 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEIDL----------E--------EENGK-P  346 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccchh----------h--------hccCC-c
Confidence            7889999999999998887765 44433     347899999999999654321          1        22333 7


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++++||++|.|++++++++.+.+..
T Consensus       347 ~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        347 VIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            8999999999999999999988753

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=1.6e-20  Score=155.58  Aligned_cols=156  Identities=23%  Similarity=0.228  Sum_probs=111.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc-----------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR-----------   70 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-----------   70 (207)
                      ..+|+++|.+++| ||||+|+|++...  ...+..|..+.....+..++.  .+.+|||||..+.....           
T Consensus       172 ~~~v~ivG~~~~G-KSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       172 PIKIAIIGRPNVG-KSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            4689999999999 9999999998763  334444544444455555664  67899999976654332           


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH-HHHHH-
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQ-  148 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-~~~~~-  148 (207)
                      ..+++.+|++++|+|+++..+.++.  .++..+..  .+.|+++|+||+|+.+...           ..++.. .+.+. 
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~-----------~~~~~~~~~~~~~  313 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLVKDEK-----------TREEFKKELRRKL  313 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccCCCHH-----------HHHHHHHHHHHhc
Confidence            2357889999999999998887775  44444443  3799999999999973221           122222 22222 


Q ss_pred             --hCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          149 --IGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       149 --~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                        .+..+++++||++|.|++++|+++.+.+.
T Consensus       314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             ccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence              23458999999999999999999988765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=1.3e-20  Score=156.39  Aligned_cols=150  Identities=19%  Similarity=0.178  Sum_probs=107.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc--------cccccccee
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLSY   74 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~   74 (207)
                      .+|+++|.++|| ||||+|+|.+.+.  ...+..+..+.....+..++  ..+.+|||||++.        .......++
T Consensus         2 ~~I~ivG~~~vG-KStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~   78 (435)
T PRK00093          2 PVVAIVGRPNVG-KSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI   78 (435)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            589999999999 9999999998874  33333333344444566666  6789999999886        222345567


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      ..+|++++|+|.++..+..+.  .+...+...  +.|+++|+||+|+.+..              ....++ ..++...+
T Consensus        79 ~~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~  139 (435)
T PRK00093         79 EEADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEP  139 (435)
T ss_pred             HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch--------------hhHHHH-HhcCCCCC
Confidence            899999999999886444332  223333332  79999999999964321              122222 34566458


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 028595          155 IECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +++||.+|.|++++|+.++...
T Consensus       140 ~~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        140 YPISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             EEEEeeCCCCHHHHHHHHHhhC
Confidence            9999999999999999998844

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=2.1e-20  Score=152.58  Aligned_cols=159  Identities=20%  Similarity=0.190  Sum_probs=114.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCc----cccccccce---ec
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLS---YR   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~---~~   75 (207)
                      ..-|+++|.+++| ||||++++++.+.. ..|.-|+-......+.+++ ...+.+||+||..    ....+...|   +.
T Consensus       158 ~adVglVG~pNaG-KSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhie  235 (424)
T PRK12297        158 LADVGLVGFPNVG-KSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIE  235 (424)
T ss_pred             cCcEEEEcCCCCC-HHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHh
Confidence            4579999999999 99999999987632 2333222221122233331 3568899999963    223344444   44


Q ss_pred             CCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           76 GADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        76 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      +++++++|+|+++.   ++++.. ..|.+++..+.   .+.|++||+||+|+..              ..+..+.+.+.+
T Consensus       236 r~~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~--------------~~e~l~~l~~~l  300 (424)
T PRK12297        236 RTRVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPE--------------AEENLEEFKEKL  300 (424)
T ss_pred             hCCEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcC--------------CHHHHHHHHHHh
Confidence            59999999999865   666766 67777777665   3789999999999832              234556677777


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +. +++++||++++|++++++++.+.+...+
T Consensus       301 ~~-~i~~iSA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        301 GP-KVFPISALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CC-cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            75 8999999999999999999998886543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.85  E-value=9.9e-21  Score=139.69  Aligned_cols=159  Identities=14%  Similarity=0.066  Sum_probs=112.4

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCcee--------------eeeee-EEEECCeEEEEEEEeCCCCccccccc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF--------------DNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLR   70 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~--------------~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~   70 (207)
                      +|+++|..++| ||||+++|++......+.++..              ..... ....+.....+.+|||||+..+...+
T Consensus         1 ~v~v~G~~~~G-KStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~   79 (189)
T cd00881           1 NVGIAGHVDHG-KTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEV   79 (189)
T ss_pred             CEEEEeCCCCC-HHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHH
Confidence            48999999999 9999999998876544322221              11110 11112224678999999999888888


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      ..+++.+|++++|+|.++..+....  .++..+..  .+.|+++++||+|+......        ....+++++..+..+
T Consensus        80 ~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~  147 (189)
T cd00881          80 IRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEEDL--------EEVLREIKELLGLIG  147 (189)
T ss_pred             HHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhcH--------HHHHHHHHHHHcccc
Confidence            8999999999999999987655443  34444443  48999999999999753221        002334444444422


Q ss_pred             -------------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          151 -------------ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       151 -------------~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                                   ..+++++||++|.|++++|.++.+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                         248999999999999999999998874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.84  E-value=4.7e-23  Score=145.85  Aligned_cols=167  Identities=23%  Similarity=0.326  Sum_probs=143.4

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECC-eEEEEEEEeCCCCccccccccceecCCcE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADV   79 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~d~   79 (207)
                      ++++|+.++|.-++| ||+++.++.-..+...|..|+|..+ .+...-++ ..+.++|||+.||+++..+...|++.+.+
T Consensus        23 ~hL~k~lVig~~~vg-kts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVG-KTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhheeeecccc-chhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            467899999999999 9999999999999999999999888 34444444 45788999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      ..+|||+++.-+|+.. ..|.+.+-...     ..+|+++..||+|..+.-..         -...+..++++.+|...+
T Consensus       102 ~~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~---------~~~~~~d~f~kengf~gw  171 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN---------EATRQFDNFKKENGFEGW  171 (229)
T ss_pred             eEEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhhh---------hhHHHHHHHHhccCccce
Confidence            9999999999999999 78988886544     25788999999998765321         134677888999999999


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++|++.+.|++|+-..+++.+.-.
T Consensus       172 tets~Kenkni~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  172 TETSAKENKNIPEAQRELVEKILVN  196 (229)
T ss_pred             eeeccccccChhHHHHHHHHHHHhh
Confidence            9999999999999999999988744

>PRK00089 era GTPase Era; Reviewed

Probab=99.84  E-value=1.9e-20  Score=147.74  Aligned_cols=160  Identities=19%  Similarity=0.174  Sum_probs=111.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccc--cCceeeeeeeEEEECCeEEEEEEEeCCCCccccc--------cccce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~   73 (207)
                      ...|+++|.+++| ||||+|++++.++....  ..|...... .+... ...++.+|||||......        .....
T Consensus         5 ~g~V~iiG~pn~G-KSTLin~L~g~~~~~vs~~~~tt~~~i~-~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          5 SGFVAIVGRPNVG-KSTLLNALVGQKISIVSPKPQTTRHRIR-GIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eEEEEEECCCCCC-HHHHHHHHhCCceeecCCCCCcccccEE-EEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            4579999999999 99999999988764322  222222111 12222 237889999999654321        22345


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      +.++|++++|+|+++..+...  ..++..+..  .+.|+++|+||+|+......          .....+.+.+..+..+
T Consensus        82 ~~~~D~il~vvd~~~~~~~~~--~~i~~~l~~--~~~pvilVlNKiDl~~~~~~----------l~~~~~~l~~~~~~~~  147 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGPGD--EFILEKLKK--VKTPVILVLNKIDLVKDKEE----------LLPLLEELSELMDFAE  147 (292)
T ss_pred             HhcCCEEEEEEeCCCCCChhH--HHHHHHHhh--cCCCEEEEEECCcCCCCHHH----------HHHHHHHHHhhCCCCe
Confidence            678999999999998322221  234444442  36899999999999743321          4456667777667668


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++++||+++.|++++++++.+.+...+
T Consensus       148 i~~iSA~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        148 IVPISALKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999886543

>cd01889 SelB_euk SelB subfamily

Probab=99.84  E-value=1.2e-20  Score=140.07  Aligned_cols=162  Identities=12%  Similarity=0.007  Sum_probs=102.8

Q ss_pred             eeEEEEecccccceeeeeeeccCC----CCCccc-----cCceeeee-eeEEE----------ECCeEEEEEEEeCCCCc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR----SSIWDY-----IPTVFDNF-SANVV----------AEGTTVNLGLWDTAGQE   64 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~----~~~~~~-----~~t~~~~~-~~~~~----------~~~~~~~l~i~D~~G~~   64 (207)
                      ++|+++|..++| ||||+++|+..    .+...+     ..|....+ ...+.          .++..+.+.+|||||+.
T Consensus         1 ~~i~i~G~~~~G-KstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~   79 (192)
T cd01889           1 VNVGVLGHVDSG-KTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA   79 (192)
T ss_pred             CeEEEEecCCCC-HHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence            479999999999 99999999863    121111     12322222 11221          12346789999999986


Q ss_pred             cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH
Q 028595           65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  144 (207)
Q Consensus        65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~  144 (207)
                      .+..........+|++++|+|+++....... ..+. ....  .+.|+++++||+|+......        ....++.++
T Consensus        80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~--------~~~~~~~~~  147 (192)
T cd01889          80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIPEEER--------ERKIEKMKK  147 (192)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCCHHHH--------HHHHHHHHH
Confidence            5433222334568999999999885444432 1221 1121  26799999999998643210        002233332


Q ss_pred             HHH-H------hCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          145 LRK-Q------IGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       145 ~~~-~------~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ... .      .+. +++++||++|+|+++++.++..++..+.
T Consensus       148 ~l~~~~~~~~~~~~-~vi~iSa~~g~gi~~L~~~l~~~~~~~~  189 (192)
T cd01889         148 KLQKTLEKTRFKNS-PIIPVSAKPGGGEAELGKDLNNLIVLPL  189 (192)
T ss_pred             HHHHHHHhcCcCCC-CEEEEeccCCCCHHHHHHHHHhcccccc
Confidence            221 1      233 8999999999999999999999887653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.84  E-value=3.7e-20  Score=132.49  Aligned_cols=145  Identities=20%  Similarity=0.207  Sum_probs=104.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc--------cccee
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSY   74 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~   74 (207)
                      .+|+++|.+++| ||||++++.+....  ..+.++........+..++  ..+.+|||||...+...        ...++
T Consensus         2 ~~i~l~G~~~~G-Kstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~   78 (157)
T cd04164           2 IKVVIVGKPNVG-KSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAI   78 (157)
T ss_pred             cEEEEECCCCCC-HHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence            589999999999 99999999988642  2222222222233444444  56899999997655322        22456


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      .++|++++|+|++++.+.... ..+..     ....|+++++||+|+.+...           .      .....+. ++
T Consensus        79 ~~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~-----------~------~~~~~~~-~~  134 (157)
T cd04164          79 EEADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE-----------L------LSLLAGK-PI  134 (157)
T ss_pred             hhCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc-----------c------ccccCCC-ce
Confidence            789999999999998888776 33332     24799999999999875442           1      2233344 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 028595          155 IECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +++||+++.|++++++++.+.+
T Consensus       135 ~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         135 IAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            9999999999999999987754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.84  E-value=3.4e-20  Score=157.18  Aligned_cols=152  Identities=14%  Similarity=0.180  Sum_probs=108.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+|+++|..++| ||||+++|.+.++...+.+.++... ...+..++. ..+.+|||||++.|..++...+..+|++|+
T Consensus        87 ~p~V~I~Ghvd~G-KTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        87 PPVVTIMGHVDHG-KTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            3689999999999 9999999998887665544443332 223444332 268899999999999999989999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-------C-cEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-------A-SYY  154 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~-~~~  154 (207)
                      |+|+++....+.. . .+.....  .++|+++++||+|+.+.             ..+.....+..++       . .++
T Consensus       165 VVda~dgv~~qT~-e-~i~~~~~--~~vPiIVviNKiDl~~~-------------~~e~v~~~L~~~g~~~~~~~~~~~~  227 (587)
T TIGR00487       165 VVAADDGVMPQTI-E-AISHAKA--ANVPIIVAINKIDKPEA-------------NPDRVKQELSEYGLVPEDWGGDTIF  227 (587)
T ss_pred             EEECCCCCCHhHH-H-HHHHHHH--cCCCEEEEEECcccccC-------------CHHHHHHHHHHhhhhHHhcCCCceE
Confidence            9999874332222 1 1122222  37999999999998643             2223333333322       1 378


Q ss_pred             EEeccCCCCCHHHHHHHHHH
Q 028595          155 IECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      +++||++|+|++++|+++..
T Consensus       228 v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       228 VPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             EEEECCCCCChHHHHHhhhh
Confidence            99999999999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04163 Era Era subfamily

Probab=99.84  E-value=2.3e-20  Score=134.54  Aligned_cols=157  Identities=15%  Similarity=0.083  Sum_probs=106.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc--------cccceec
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYR   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~   75 (207)
                      ..+|+++|.+++| ||||++++.+...........................+.+|||||......        .....+.
T Consensus         3 ~~~i~~~G~~g~G-Kttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVG-KSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCC-HHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            3589999999999 999999999876532221111111222222233346788999999754332        2234577


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                      .+|++++|+|++++.+...  ..+...+...  +.|+++++||+|+......          ..+....+....+..+++
T Consensus        82 ~~d~i~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~  147 (168)
T cd04163          82 DVDLVLFVVDASEPIGEGD--EFILELLKKS--KTPVILVLNKIDLVKDKED----------LLPLLEKLKELGPFAEIF  147 (168)
T ss_pred             hCCEEEEEEECCCccCchH--HHHHHHHHHh--CCCEEEEEEchhccccHHH----------HHHHHHHHHhccCCCceE
Confidence            8999999999998722222  2344444432  6899999999999743331          344455555555545899


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028595          156 ECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      ++|++++.+++++++.|.+.
T Consensus       148 ~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         148 PISALKGENVDELLEEIVKY  167 (168)
T ss_pred             EEEeccCCChHHHHHHHHhh
Confidence            99999999999999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.83  E-value=2.6e-20  Score=138.60  Aligned_cols=160  Identities=18%  Similarity=0.060  Sum_probs=108.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCc----------cccccccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----------DYNRLRPL   72 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~   72 (207)
                      ...+|+++|.+++| ||||++++++.++...+.++.+.+.......-  ...+.+|||||..          .+..+...
T Consensus        23 ~~~~v~ivG~~~~G-KSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         23 DGPEIAFAGRSNVG-KSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCEEEEEcCCCCC-HHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            35789999999999 99999999998766666667665443332211  3678999999943          23333444


Q ss_pred             eecC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           73 SYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        73 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      +++.   .+++++|+|.+++.+....  .+...+..  .+.|+++++||+|+....+.        ....+.+..+....
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~--------~~~~~~i~~~l~~~  167 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGER--------KKQLKKVRKALKFG  167 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHHH--------HHHHHHHHHHHHhc
Confidence            5554   3678889998876544332  22233332  37899999999998654321        01223344444444


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      .. +++++||+++.|++++|+.+.+.+.+
T Consensus       168 ~~-~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        168 DD-EVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             CC-ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            44 88999999999999999999876643

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.83  E-value=6.1e-20  Score=152.10  Aligned_cols=152  Identities=19%  Similarity=0.210  Sum_probs=109.6

Q ss_pred             eEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCc--------cccccccceec
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYR   75 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~   75 (207)
                      +|+++|.++|| ||||+|+|++...  ...+..+..+.....+..++.  .+.+|||||..        .+......+++
T Consensus         1 ~i~ivG~~nvG-KStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~   77 (429)
T TIGR03594         1 VVAIVGRPNVG-KSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIE   77 (429)
T ss_pred             CEEEECCCCCC-HHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence            58999999999 9999999998763  233333333334445555664  58999999963        23344556788


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                      .+|++++|+|.++..+..+.  .+...+.+  .+.|+++|+||+|+.+...           .   ..+ ...+|..+++
T Consensus        78 ~ad~vl~vvD~~~~~~~~d~--~i~~~l~~--~~~piilVvNK~D~~~~~~-----------~---~~~-~~~lg~~~~~  138 (429)
T TIGR03594        78 EADVILFVVDGREGLTPEDE--EIAKWLRK--SGKPVILVANKIDGKKEDA-----------V---AAE-FYSLGFGEPI  138 (429)
T ss_pred             hCCEEEEEEeCCCCCCHHHH--HHHHHHHH--hCCCEEEEEECccCCcccc-----------c---HHH-HHhcCCCCeE
Confidence            99999999999886544432  34444443  3789999999999865432           1   112 3456766899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++||.+|.|+.++++++.+.+...
T Consensus       139 ~vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       139 PISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             EEeCCcCCChHHHHHHHHHhcCcc
Confidence            999999999999999999887553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.2e-19  Score=123.51  Aligned_cols=159  Identities=11%  Similarity=0.054  Sum_probs=123.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ....+.++|-.+.| ||+++.++--++ .....||++....   .+..++..+++||.+|+-..+.+|+.||.++|++|+
T Consensus        17 ~e~rililgldGaG-kttIlyrlqvge-vvttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAG-KTTILYRLQVGE-VVTTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCC-eeEEEEEcccCc-ccccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            45679999999999 999999998776 3456788764432   223467899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhCCcEEEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYIE  156 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~e  156 (207)
                      |.|.+|++........++.++.+.. ....+++++||.|......            ..++..     -.+..- ..+++
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t------------~~E~~~~L~l~~Lk~r~-~~Iv~  158 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALT------------RSEVLKMLGLQKLKDRI-WQIVK  158 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhh------------HHHHHHHhChHHHhhhe-eEEEe
Confidence            9999999888777667777776544 5678899999999865432            222111     111112 37899


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028595          157 CSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +||.+|+|++++++|+.+.+..+
T Consensus       159 tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  159 TSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             eccccccCCcHHHHHHHHHHhcc
Confidence            99999999999999999887653

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.83  E-value=5.7e-20  Score=151.93  Aligned_cols=162  Identities=15%  Similarity=0.088  Sum_probs=109.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----ccccc---ccee
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLR---PLSY   74 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~---~~~~   74 (207)
                      ....|+++|.+++| ||||+|+|++.+.. ..|.-|+.......+..++  ..+.+||+||...    ...+.   -.++
T Consensus       158 ~~adV~LVG~PNAG-KSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhi  234 (500)
T PRK12296        158 SVADVGLVGFPSAG-KSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHI  234 (500)
T ss_pred             ccceEEEEEcCCCC-HHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHH
Confidence            35789999999999 99999999987542 2333333222233444444  5789999999532    11221   2245


Q ss_pred             cCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcC------------CCCcEEEEeeCCCcccCcccccCCCCCcccC
Q 028595           75 RGADVFVLAFSLVSR----ASYENVLKKWIPELQHYS------------PGVPVVLVGTKLDLREDKHYLADHPGLVPVT  138 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~------------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~  138 (207)
                      .++|++|+|+|+++.    +.+.++ ..+..++..+.            .+.|++||+||+|+.+...           .
T Consensus       235 eradvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-----------l  302 (500)
T PRK12296        235 ERCAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-----------L  302 (500)
T ss_pred             HhcCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-----------H
Confidence            679999999999863    344444 44444444332            3689999999999965432           2


Q ss_pred             HHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          139 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       139 ~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      .+.........++ +++++||++++|+++++.++.+.+...+
T Consensus       303 ~e~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        303 AEFVRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             HHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            2233333444566 8999999999999999999998886543

>PRK11058 GTPase HflX; Provisional

Probab=99.82  E-value=1.1e-19  Score=149.08  Aligned_cols=156  Identities=15%  Similarity=0.084  Sum_probs=106.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCcccc-CceeeeeeeEEEECCeEEEEEEEeCCCCccc--ccccc------ceec
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLRP------LSYR   75 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~~------~~~~   75 (207)
                      .+|+++|.+|+| ||||+|+|++........ .+.-+.....+.+.+. ..+.+|||+|..+.  ..++.      ..+.
T Consensus       198 p~ValVG~~NaG-KSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        198 PTVSLVGYTNAG-KSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            589999999999 999999999876432222 2222222334555542 25679999997432  22222      2367


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      .+|++++|+|++++.+...+ ..|...+.... .++|+++|+||+|+.+...           ..  ..  ....+...+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~--~~--~~~~~~~~~  339 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PR--ID--RDEENKPIR  339 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HH--HH--HHhcCCCce
Confidence            89999999999999887776 44444444433 4799999999999864321           11  11  112344235


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +.+||++|.|++++++++.+.+..
T Consensus       340 v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        340 VWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhhh
Confidence            889999999999999999998853

>cd01895 EngA2 EngA2 subfamily

Probab=99.82  E-value=1.9e-19  Score=130.82  Aligned_cols=155  Identities=23%  Similarity=0.241  Sum_probs=104.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc-----------c
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-----------R   70 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~   70 (207)
                      ..+|+++|.+++| ||||++++++....  .....+........+..++.  .+.+|||||.......           .
T Consensus         2 ~~~i~i~G~~~~G-Kstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVG-KSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCC-HHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHH
Confidence            3689999999999 99999999987632  22222322223334455554  4679999997543110           1


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH-HHHHHHHh
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQI  149 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~  149 (207)
                      ..++.++|++++|+|.+++.+....  .+...+..  .+.|+++++||+|+.+....          ..+. ...+.+.+
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~  144 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDSK----------TMKEFKKEIRRKL  144 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccHH----------HHHHHHHHHHhhc
Confidence            2345689999999999998776654  33333333  36899999999998765311          2222 22233333


Q ss_pred             C---CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          150 G---ASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       150 ~---~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +   ..+++++||++++|++++++.+.+.
T Consensus       145 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         145 PFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            2   3489999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.82  E-value=7.5e-20  Score=124.14  Aligned_cols=153  Identities=18%  Similarity=0.230  Sum_probs=119.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .++|.++|-.++| ||||+..+.+.. .....||.|-. .+.+..+| .+.+++||++||...+..|..||.+.|++|+|
T Consensus        17 EirilllGldnAG-KTT~LKqL~sED-~~hltpT~GFn-~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV   92 (185)
T KOG0074|consen   17 EIRILLLGLDNAG-KTTFLKQLKSED-PRHLTPTNGFN-TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV   92 (185)
T ss_pred             eEEEEEEecCCCc-chhHHHHHccCC-hhhccccCCcc-eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence            5799999999999 999999997665 34556777632 33444444 78999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-------cEEE
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYYI  155 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~  155 (207)
                      .|.+|..-++++...+.++++... ..+|+.+.+||.|+.-.-               .++..+..++.       -.+-
T Consensus        93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa---------------~~eeia~klnl~~lrdRswhIq  157 (185)
T KOG0074|consen   93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA---------------KVEEIALKLNLAGLRDRSWHIQ  157 (185)
T ss_pred             EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc---------------chHHHHHhcchhhhhhceEEee
Confidence            999999999999777777776544 689999999999985432               22333333332       1345


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028595          156 ECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      ++||++++++.....++...
T Consensus       158 ~csals~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  158 ECSALSLEGSTDGSDWVQSN  177 (185)
T ss_pred             eCccccccCccCcchhhhcC
Confidence            79999999999988887543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.82  E-value=1.1e-19  Score=154.90  Aligned_cols=162  Identities=15%  Similarity=0.139  Sum_probs=117.0

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCC--CC-----cccc------Cceeeee-eeEEEE-----CCeEEEEEEEeCCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRS--SI-----WDYI------PTVFDNF-SANVVA-----EGTTVNLGLWDTAG   62 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~--~~-----~~~~------~t~~~~~-~~~~~~-----~~~~~~l~i~D~~G   62 (207)
                      +...+++++|..++| ||||+.+|+...  +.     ..+.      .+.|.++ ...+.+     ++..+.+++|||||
T Consensus         5 ~~iRNi~IiGhvd~G-KTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG   83 (600)
T PRK05433          5 KNIRNFSIIAHIDHG-KSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG   83 (600)
T ss_pred             ccCCEEEEECCCCCC-HHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence            345799999999999 999999997531  11     1111      1112222 111211     56689999999999


Q ss_pred             CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH
Q 028595           63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  142 (207)
Q Consensus        63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~  142 (207)
                      +.++...+..+++.+|++|+|+|+++....+.. ..|.....   .+.|+++|+||+|+....            .....
T Consensus        84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~------------~~~v~  147 (600)
T PRK05433         84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD------------PERVK  147 (600)
T ss_pred             cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc------------HHHHH
Confidence            999998899999999999999999987666655 44543332   378999999999986432            22233


Q ss_pred             HHHHHHhCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          143 EELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       143 ~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      .++.+.+++.  .++.+||++|.|++++++++++.+..+.
T Consensus       148 ~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        148 QEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             HHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            4555556652  4899999999999999999999887664

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.81  E-value=1.2e-19  Score=156.09  Aligned_cols=159  Identities=12%  Similarity=0.153  Sum_probs=110.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceee---eeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFD---NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      ...|+++|..++| ||||+++|.+..+.....++++.   .+...+..++....+.+|||||++.|..++..++..+|++
T Consensus       244 ~p~V~IvGhvdvG-KTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        244 PPIVTILGHVDHG-KTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            4689999999999 99999999988765443333321   1233334445568899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH---HHHHhC-CcEEEE
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE---LRKQIG-ASYYIE  156 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~-~~~~~e  156 (207)
                      |+|+|+++....+.. .. +..+..  .++|+++++||+|+......         ....+...   +...++ ..++++
T Consensus       323 ILVVDA~dGv~~QT~-E~-I~~~k~--~~iPiIVViNKiDl~~~~~e---------~v~~eL~~~~ll~e~~g~~vpvv~  389 (742)
T CHL00189        323 ILIIAADDGVKPQTI-EA-INYIQA--ANVPIIVAINKIDKANANTE---------RIKQQLAKYNLIPEKWGGDTPMIP  389 (742)
T ss_pred             EEEEECcCCCChhhH-HH-HHHHHh--cCceEEEEEECCCccccCHH---------HHHHHHHHhccchHhhCCCceEEE
Confidence            999999874333222 11 122222  37999999999998653210         00111111   123333 248999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +||++|.|++++|+.+....
T Consensus       390 VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        390 ISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             EECCCCCCHHHHHHhhhhhh
Confidence            99999999999999988764

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.81  E-value=1.5e-19  Score=153.93  Aligned_cols=145  Identities=16%  Similarity=0.155  Sum_probs=107.3

Q ss_pred             ecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc------cccee--cCCcEEE
Q 028595           11 FATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFV   81 (207)
Q Consensus        11 G~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~~d~~i   81 (207)
                      |.+|+| ||||+|++++.+......|+.+.+. ...+..++.  .+.+|||||++.+...      .+.++  .++|+++
T Consensus         1 G~pNvG-KSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI   77 (591)
T TIGR00437         1 GNPNVG-KSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV   77 (591)
T ss_pred             CCCCCC-HHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence            789999 9999999998876444445444433 335555653  5789999999887654      23343  3689999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      +|+|.++.+...    .+..++.+  .++|+++++||+|+.+.+.           ...+.+.+++.+|. +++++||++
T Consensus        78 ~VvDat~ler~l----~l~~ql~~--~~~PiIIVlNK~Dl~~~~~-----------i~~d~~~L~~~lg~-pvv~tSA~t  139 (591)
T TIGR00437        78 NVVDASNLERNL----YLTLQLLE--LGIPMILALNLVDEAEKKG-----------IRIDEEKLEERLGV-PVVPTSATE  139 (591)
T ss_pred             EEecCCcchhhH----HHHHHHHh--cCCCEEEEEehhHHHHhCC-----------ChhhHHHHHHHcCC-CEEEEECCC
Confidence            999999855432    22223322  3799999999999865543           23457888888997 999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKVV  176 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~  176 (207)
                      |+|++++|+.+.+..
T Consensus       140 g~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       140 GRGIERLKDAIRKAI  154 (591)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.81  E-value=4.8e-20  Score=135.43  Aligned_cols=148  Identities=15%  Similarity=0.066  Sum_probs=100.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeE-EEECCeEEEEEEEeCCCCc----------ccccccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQE----------DYNRLRP   71 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~D~~G~~----------~~~~~~~   71 (207)
                      ...+|+++|.+++| ||||+|++++..+...+.++.+.+.... +..++   .+.+|||||..          .+..+..
T Consensus        17 ~~~~i~ivG~~~~G-KStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        17 DGPEIAFAGRSNVG-KSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCEEEEEcCCCCC-HHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            35799999999999 9999999998875555556655444332 22232   58899999953          2233333


Q ss_pred             ceecC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           72 LSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        72 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                      .|++.   ++++++|+|.+++-+..+.  .++..+..  .+.|+++++||+|+.+....        ....+++++.+..
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~~~~--------~~~~~~i~~~l~~  160 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKKSEL--------NKQLKKIKKALKK  160 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCHHHH--------HHHHHHHHHHHhh
Confidence            45543   5799999999886555554  33444443  27899999999998643321        0133455555555


Q ss_pred             hCC-cEEEEeccCCCCCHH
Q 028595          149 IGA-SYYIECSSKTQQNVK  166 (207)
Q Consensus       149 ~~~-~~~~e~Sa~~~~~i~  166 (207)
                      .+. .+++++||++|+|++
T Consensus       161 ~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       161 DADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             ccCCCceEEEECCCCCCCC
Confidence            542 279999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.81  E-value=2e-19  Score=153.01  Aligned_cols=156  Identities=15%  Similarity=0.087  Sum_probs=114.5

Q ss_pred             eEEEEecccccceeeeeeeccCC---CCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR---SSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~---~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      .|+++|..++| ||||+++|++.   .+..++.++++.... ..+..++  ..+.+||+||+++|......++.++|+++
T Consensus         2 ~I~iiG~~d~G-KTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         2 IIATAGHVDHG-KTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            58999999999 99999999963   333444455544442 2344454  78899999999998877777889999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC---CcEE
Q 028595           82 LAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG---ASYY  154 (207)
Q Consensus        82 ~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~  154 (207)
                      +|+|+++   +++.+.+  .++   ..  .++| +++|+||+|+.+....        ....++++.+++.++   ..++
T Consensus        79 LVVDa~~G~~~qT~ehl--~il---~~--lgi~~iIVVlNK~Dlv~~~~~--------~~~~~ei~~~l~~~~~~~~~~i  143 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL--AVL---DL--LGIPHTIVVITKADRVNEEEI--------KRTEMFMKQILNSYIFLKNAKI  143 (581)
T ss_pred             EEEECCCCCcHHHHHHH--HHH---HH--cCCCeEEEEEECCCCCCHHHH--------HHHHHHHHHHHHHhCCCCCCcE
Confidence            9999998   5555554  222   22  2677 9999999999754321        012345667776653   2389


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++||++|+|+++++..+...+...
T Consensus       144 i~vSA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       144 FKTSAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             EEEeCCCCCCchhHHHHHHHHHHhC
Confidence            9999999999999999988776544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.81  E-value=2.9e-19  Score=145.12  Aligned_cols=162  Identities=19%  Similarity=0.162  Sum_probs=114.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc----cc---cceec
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LR---PLSYR   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~---~~~~~   75 (207)
                      ..-|+++|.+|+| ||||+|+|++.+.. ..|..|+.....-.+..++ ...+.++||||...-..    +.   ..++.
T Consensus       159 iadValVG~PNaG-KSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~  236 (390)
T PRK12298        159 LADVGLLGLPNAG-KSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLE  236 (390)
T ss_pred             cccEEEEcCCCCC-HHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence            4579999999999 99999999987642 2333333333333333332 23578999999643211    11   13477


Q ss_pred             CCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           76 GADVFVLAFSLV---SRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        76 ~~d~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      .+|++++|+|++   +.+.++.. ..|++.+..+.   .+.|+++|+||+|+.....           ..+..+.+.+.+
T Consensus       237 radvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~  304 (390)
T PRK12298        237 RCRVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEAL  304 (390)
T ss_pred             hCCEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHh
Confidence            899999999998   45666666 67777777654   3689999999999865432           234455566655


Q ss_pred             CCc-EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          150 GAS-YYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       150 ~~~-~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +.. +++.+||+++.|++++++.+.+.+...
T Consensus       305 ~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        305 GWEGPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            532 689999999999999999999988654

>COG1159 Era GTPase [General function prediction only]

Probab=99.81  E-value=1.2e-19  Score=138.56  Aligned_cols=162  Identities=13%  Similarity=0.073  Sum_probs=116.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc--------cccceec
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYR   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~   75 (207)
                      ..-|+++|.+|+| ||||+|++++.+.........+.+...+-.+.....++.+.||||-...+.        .....+.
T Consensus         6 sGfVaIiGrPNvG-KSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~   84 (298)
T COG1159           6 SGFVAIIGRPNVG-KSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK   84 (298)
T ss_pred             EEEEEEEcCCCCc-HHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence            3568999999999 999999999999765444444444444333333478899999999544322        2335577


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                      ++|+++||.|+++...-.+  ...++.+..  .+.|++++.||+|..++...          .......+.........+
T Consensus        85 dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~~----------l~~~~~~~~~~~~f~~iv  150 (298)
T COG1159          85 DVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKTV----------LLKLIAFLKKLLPFKEIV  150 (298)
T ss_pred             cCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHHH----------HHHHHHHHHhhCCcceEE
Confidence            8999999999988544433  244555544  36899999999998776531          233444455555666889


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++||++|.|++.+.+.+...+.+.+
T Consensus       151 piSA~~g~n~~~L~~~i~~~Lpeg~  175 (298)
T COG1159         151 PISALKGDNVDTLLEIIKEYLPEGP  175 (298)
T ss_pred             EeeccccCCHHHHHHHHHHhCCCCC
Confidence            9999999999999999999987654

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.80  E-value=5.3e-19  Score=153.43  Aligned_cols=154  Identities=14%  Similarity=0.204  Sum_probs=107.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...|+++|..++| ||||+++|.+.++.....+.++... ...+..++  ..+.+|||||++.|..++...+..+|++|+
T Consensus       290 ~pvV~ImGhvd~G-KTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        290 PPVVTIMGHVDHG-KTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            3579999999999 9999999988876654433332222 22344444  568899999999999999989999999999


Q ss_pred             EEeCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHH--HHHHHHHHhC-CcEEEE
Q 028595           83 AFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA--QGEELRKQIG-ASYYIE  156 (207)
Q Consensus        83 v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~-~~~~~e  156 (207)
                      |+|+++.   ++.+.+     ..+..  .++|+++++||+|+...+..        .+..+  +...+++.++ ..++++
T Consensus       367 VVdAddGv~~qT~e~i-----~~a~~--~~vPiIVviNKiDl~~a~~e--------~V~~eL~~~~~~~e~~g~~vp~vp  431 (787)
T PRK05306        367 VVAADDGVMPQTIEAI-----NHAKA--AGVPIIVAINKIDKPGANPD--------RVKQELSEYGLVPEEWGGDTIFVP  431 (787)
T ss_pred             EEECCCCCCHhHHHHH-----HHHHh--cCCcEEEEEECccccccCHH--------HHHHHHHHhcccHHHhCCCceEEE
Confidence            9999884   333332     12222  37999999999999643210        00111  1111233344 138999


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +||++|.|++++|+++...
T Consensus       432 vSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        432 VSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             EeCCCCCCchHHHHhhhhh
Confidence            9999999999999998753

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=2.7e-19  Score=143.70  Aligned_cols=176  Identities=18%  Similarity=0.178  Sum_probs=125.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc---------ccccce
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN---------RLRPLS   73 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~~   73 (207)
                      ..|+++|.+||| ||||.|+|++.+.  .+++.-++.++........+..  +.++||+|-+...         ......
T Consensus         4 ~~VAIVGRPNVG-KSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVG-KSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCc-HHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            579999999999 9999999999985  4566666666665566666644  8899999966432         223456


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      +..||++|||+|....-+..+  ....+.+..  .++|+++|.||+|-...              .+.+. -...+|...
T Consensus        81 i~eADvilfvVD~~~Git~~D--~~ia~~Lr~--~~kpviLvvNK~D~~~~--------------e~~~~-efyslG~g~  141 (444)
T COG1160          81 IEEADVILFVVDGREGITPAD--EEIAKILRR--SKKPVILVVNKIDNLKA--------------EELAY-EFYSLGFGE  141 (444)
T ss_pred             HHhCCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEEcccCchh--------------hhhHH-HHHhcCCCC
Confidence            778999999999987544444  244445542  37999999999996421              22222 234577778


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEeeecCCcccc
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVR  205 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  205 (207)
                      .+.+||..|.|+.++.+++++.+. .....+....  ..+.-....|||++.
T Consensus       142 ~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~--~~~ikiaiiGrPNvG  190 (444)
T COG1160         142 PVPISAEHGRGIGDLLDAVLELLP-PDEEEEEEEE--TDPIKIAIIGRPNVG  190 (444)
T ss_pred             ceEeehhhccCHHHHHHHHHhhcC-Cccccccccc--CCceEEEEEeCCCCC
Confidence            999999999999999999999985 2221111111  567777888999864

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=1.9e-19  Score=156.92  Aligned_cols=156  Identities=18%  Similarity=0.159  Sum_probs=111.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc----------ccc-c
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----------NRL-R   70 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----------~~~-~   70 (207)
                      ..||+++|.+++| ||||+|+|++.+.  ...+.+|..+.+...+.+++..  +.+|||||..+.          ..+ .
T Consensus       450 ~~kI~ivG~~nvG-KSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        450 LRRVALVGRPNVG-KSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            3699999999999 9999999998874  3455556555555566677755  569999996421          111 1


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-HHH--
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRK--  147 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-~~~--  147 (207)
                      ..+++.+|++++|+|+++..+.++.  .+...+..  .+.|+++|+||+|+.+...            .+..+. +..  
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~--~i~~~~~~--~~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~l  590 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDL--KVMSMAVD--AGRALVLVFNKWDLMDEFR------------RQRLERLWKTEF  590 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEEchhcCChhH------------HHHHHHHHHHhc
Confidence            2346789999999999999888876  34444433  3799999999999965321            111221 222  


Q ss_pred             -HhCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          148 -QIGASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       148 -~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                       .....+.+.+||++|.|++++|+.+.+.+..
T Consensus       591 ~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        591 DRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence             2233467899999999999999999988764

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=7.9e-19  Score=153.03  Aligned_cols=153  Identities=21%  Similarity=0.213  Sum_probs=104.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc-cccCcee-eeeeeEEEECCeEEEEEEEeCCCCccc--------cccccce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDY--------NRLRPLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~   73 (207)
                      ..+|+++|.++|| ||||+|+|++.+... ...|.++ +........++  ..+.+|||||.+..        ......+
T Consensus       275 ~~~V~IvG~~nvG-KSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        275 VGVVAIVGRPNVG-KSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            4689999999999 999999999876421 2223322 22222334444  46789999997642        2233456


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      +..+|++++|+|.++.-...+  ..|...+..  .+.|+++|+||+|+....              .....+ ..++...
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~--~~~pvIlV~NK~D~~~~~--------------~~~~~~-~~lg~~~  412 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD--ERIVRMLRR--AGKPVVLAVNKIDDQASE--------------YDAAEF-WKLGLGE  412 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECcccccch--------------hhHHHH-HHcCCCC
Confidence            789999999999987433332  345555554  489999999999985321              111222 1234435


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      .+++||++|.|+.++|+++++.+..
T Consensus       413 ~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        413 PYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             eEEEECCCCCCchHHHHHHHHhccc
Confidence            6799999999999999999998865

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.79  E-value=3.1e-19  Score=133.54  Aligned_cols=117  Identities=13%  Similarity=0.080  Sum_probs=88.6

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCC-cEEEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFVLA   83 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~-d~~i~v   83 (207)
                      .|+++|.+++| ||+|+++|..+.+...+.++ ...+.. ....++....+.+||+||+++++..+..+++++ +++|+|
T Consensus         2 ~vll~G~~~sG-KTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V   79 (203)
T cd04105           2 TVLLLGPSDSG-KTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV   79 (203)
T ss_pred             eEEEEcCCCCC-HHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence            68999999999 99999999998876655443 222221 222224457799999999999998888899998 999999


Q ss_pred             EeCCCh-hhHHHHHHHHHHHHhh---cCCCCcEEEEeeCCCcccC
Q 028595           84 FSLVSR-ASYENVLKKWIPELQH---YSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        84 ~d~~~~-~s~~~~~~~~~~~i~~---~~~~~piivv~nK~D~~~~  124 (207)
                      +|.++. .++..+...++..+..   ..+++|+++++||+|+...
T Consensus        80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            999998 6777764444444332   2268999999999998654

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.9e-19  Score=126.27  Aligned_cols=159  Identities=19%  Similarity=0.208  Sum_probs=121.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCC-------CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS-------SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA   77 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~   77 (207)
                      ..|+++|..++| ||||+-+.....       ......||+|.... .+.++  ...+.+||.+||+..+++|..||..+
T Consensus        18 y~vlIlgldnAG-KttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig-~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~   93 (197)
T KOG0076|consen   18 YSVLILGLDNAG-KTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG-TIEVC--NAPLSFWDLGGQESLRSLWKKYYWLA   93 (197)
T ss_pred             hhheeeccccCC-chhHHHHHHHHHHhhhcCCCHHHeecccceeec-ceeec--cceeEEEEcCChHHHHHHHHHHHHHh
Confidence            468999999999 999998764221       12344566664431 22333  46789999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH---HHhC--C
Q 028595           78 DVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR---KQIG--A  151 (207)
Q Consensus        78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~--~  151 (207)
                      +++|+++|+++++-+++....+...+.... .++|+++.+||.|+.+...            ..+.....   +..+  -
T Consensus        94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~------------~~El~~~~~~~e~~~~rd  161 (197)
T KOG0076|consen   94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME------------AAELDGVFGLAELIPRRD  161 (197)
T ss_pred             ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh------------HHHHHHHhhhhhhcCCcc
Confidence            999999999999999998666666665444 6899999999999976543            23333333   3322  1


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          152 SYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       152 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      .++..+||.+|+||++...|++..+..+
T Consensus       162 ~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  162 NPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             CccccchhhhcccHHHHHHHHHHHHhhc
Confidence            2688999999999999999999998766

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.78  E-value=2.4e-18  Score=149.90  Aligned_cols=152  Identities=13%  Similarity=0.047  Sum_probs=112.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccc----------cc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR----------PL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------~~   72 (207)
                      ..+|+++|.+|+| ||||+|++++.+...  .+..|.+. .+...++.....+.+|||||...+....          ..
T Consensus         3 ~~~IaLvG~pNvG-KSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSG-KTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            4689999999999 999999999876422  22233333 2233334455778999999987765321          22


Q ss_pred             ee--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           73 SY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        73 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      ++  ..+|++++|+|.++.+....    +..++.+.  ++|+++++||+|+.+.+.           ...+.+++.+.+|
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~l~----l~~ql~e~--giPvIvVlNK~Dl~~~~~-----------i~id~~~L~~~LG  142 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQN-----------IRIDIDALSARLG  142 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhhHH----HHHHHHHc--CCCEEEEEEchhhhhccC-----------cHHHHHHHHHHhC
Confidence            33  37999999999998765433    33333332  799999999999875543           3456788889999


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      . +++++||.+++|++++.+.+.+..
T Consensus       143 ~-pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        143 C-PVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             C-CEEEEEeecCCCHHHHHHHHHHhh
Confidence            8 999999999999999999988764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.78  E-value=1.2e-18  Score=130.35  Aligned_cols=113  Identities=18%  Similarity=0.177  Sum_probs=80.4

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL  128 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~  128 (207)
                      ..+.+|||||++.+...+...+.++|++++|+|++++    ++...+ .    .+... ...|+++++||+|+.+.... 
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~----~~~~~-~~~~iiivvNK~Dl~~~~~~-  155 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-A----ALEIM-GLKHIIIVQNKIDLVKEEQA-  155 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-H----HHHHc-CCCcEEEEEEchhccCHHHH-
Confidence            6789999999998877777778889999999999873    233322 2    22221 23579999999999653221 


Q ss_pred             cCCCCCcccCHHHHHHHHHHh---CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          129 ADHPGLVPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       129 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                             ....++++++++.+   +. +++++||++|+|++++|+.+.+.+..++
T Consensus       156 -------~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi~~L~~~l~~~l~~~~  202 (203)
T cd01888         156 -------LENYEQIKKFVKGTIAENA-PIIPISAQLKYNIDVLLEYIVKKIPTPP  202 (203)
T ss_pred             -------HHHHHHHHHHHhccccCCC-cEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence                   00224445555443   33 7899999999999999999998876653

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.78  E-value=2.5e-18  Score=142.70  Aligned_cols=159  Identities=18%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc-----------c
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-----------R   70 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~   70 (207)
                      .++|+++|.+++| ||||+|++++...  ......|..+.....+..++  ..+.+|||||..+....           .
T Consensus       173 ~~~v~ivG~~n~G-KStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        173 PIKIAIIGRPNVG-KSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            4799999999999 9999999997652  22333333333333444555  44679999996543222           1


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      ..++..+|++++|+|+++..+.++.  .+...+..  .+.|+++++||+|+.+....        ....++........+
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~--------~~~~~~~~~~l~~~~  317 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALE--AGRALVIVVNKWDLVDEKTM--------EEFKKELRRRLPFLD  317 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCCCHHHH--------HHHHHHHHHhccccc
Confidence            2357789999999999998777765  44444443  27899999999998643210        001111222222233


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      ..+++++||++|.|++++|+.+.+...
T Consensus       318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        318 YAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            458999999999999999999877554

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.77  E-value=1.7e-18  Score=146.67  Aligned_cols=161  Identities=15%  Similarity=0.063  Sum_probs=103.6

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccc----cCceeeeeeeEEEEC-------------CeEEEEEEEeCCCCccccc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDY----IPTVFDNFSANVVAE-------------GTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~   68 (207)
                      -|+++|..++| ||||+++|.+..+....    .++++..+...-...             .....+.+|||||++.|..
T Consensus         6 iV~IiG~~d~G-KTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         6 IVSVLGHVDHG-KTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             EEEEECCCCCC-HHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            48999999999 99999999988765432    223333321110001             0112388999999999999


Q ss_pred             cccceecCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcc----cCHH-
Q 028595           69 LRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP----VTTA-  140 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~----v~~~-  140 (207)
                      ++..+++.+|++++|+|+++   +++++.+ .    .+..  .++|+++++||+|+.+....  ....+.-    ...+ 
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~----~l~~--~~vpiIVv~NK~Dl~~~~~~--~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YKTPFVVAANKIDRIPGWRS--HEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHH-H----HHHH--cCCCEEEEEECCCccchhhh--ccCchHHHHHHhhhHH
Confidence            99999999999999999997   5555544 2    2222  37899999999999642110  0000000    0000 


Q ss_pred             -----------HHHHHHH------------Hh-CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595          141 -----------QGEELRK------------QI-GASYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       141 -----------~~~~~~~------------~~-~~~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                                 ....+.+            .+ +..+++++||++|+|+++++.++....
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                       0011111            11 234899999999999999999886543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.77  E-value=6e-19  Score=122.57  Aligned_cols=138  Identities=18%  Similarity=0.165  Sum_probs=105.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----ccccccceecCCcE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLSYRGADV   79 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~~~~~~d~   79 (207)
                      +.||+++|..++| ||||+++|.+...  .|..|+...|           .=.++||||.-.    +....-....+||.
T Consensus         1 MkrimliG~~g~G-KTTL~q~L~~~~~--~~~KTq~i~~-----------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~   66 (143)
T PF10662_consen    1 MKRIMLIGPSGSG-KTTLAQALNGEEI--RYKKTQAIEY-----------YDNTIDTPGEYIENPRFYHALIVTAQDADV   66 (143)
T ss_pred             CceEEEECCCCCC-HHHHHHHHcCCCC--CcCccceeEe-----------cccEEECChhheeCHHHHHHHHHHHhhCCE
Confidence            4689999999999 9999999988753  4445543222           124599999532    22223334568999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +++|.|.+++.+.-.  ..+...+     +.|++-|.||+|+..+..           ..+.++++.+.-|..+.|++|+
T Consensus        67 V~ll~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~~-----------~i~~a~~~L~~aG~~~if~vS~  128 (143)
T PF10662_consen   67 VLLLQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDDA-----------NIERAKKWLKNAGVKEIFEVSA  128 (143)
T ss_pred             EEEEecCCCCCccCC--chhhccc-----CCCEEEEEECccCccchh-----------hHHHHHHHHHHcCCCCeEEEEC
Confidence            999999999766554  3455454     689999999999985443           7788999999999988999999


Q ss_pred             CCCCCHHHHHHHHH
Q 028595          160 KTQQNVKAVFDAAI  173 (207)
Q Consensus       160 ~~~~~i~~~f~~i~  173 (207)
                      .+|+|++++.+.|-
T Consensus       129 ~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  129 VTGEGIEELKDYLE  142 (143)
T ss_pred             CCCcCHHHHHHHHh
Confidence            99999999998873

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.77  E-value=1.1e-17  Score=127.54  Aligned_cols=150  Identities=16%  Similarity=0.123  Sum_probs=101.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc----c---cccceecC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----R---LRPLSYRG   76 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~---~~~~~~~~   76 (207)
                      .+|+++|.+++| ||||+++|++.... ..+..|..+.....+..++  ..+++||+||.....    .   ....++++
T Consensus         1 ~~v~lvG~~~~G-KStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~   77 (233)
T cd01896           1 ARVALVGFPSVG-KSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVART   77 (233)
T ss_pred             CEEEEECCCCCC-HHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence            379999999999 99999999987632 2333332222233444555  578899999975432    1   12346889


Q ss_pred             CcEEEEEEeCCChhh-HHHHHHHHHH--------------------------------------------HH--------
Q 028595           77 ADVFVLAFSLVSRAS-YENVLKKWIP--------------------------------------------EL--------  103 (207)
Q Consensus        77 ~d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~i--------  103 (207)
                      +|++++|+|+++++. ...+ ...+.                                            .+        
T Consensus        78 ad~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~  156 (233)
T cd01896          78 ADLILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL  156 (233)
T ss_pred             CCEEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEE
Confidence            999999999988653 2222 12221                                            11        


Q ss_pred             --------------hhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHH
Q 028595          104 --------------QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF  169 (207)
Q Consensus       104 --------------~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  169 (207)
                                    .....-+|+++|+||+|+.               ..++++.+++..   +++++||+++.|++++|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~---------------~~~~~~~~~~~~---~~~~~SA~~g~gi~~l~  218 (233)
T cd01896         157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLI---------------SIEELDLLARQP---NSVVISAEKGLNLDELK  218 (233)
T ss_pred             EccCCCHHHHHHHHhCCceEeeEEEEEECccCC---------------CHHHHHHHhcCC---CEEEEcCCCCCCHHHHH
Confidence                          1111236999999999984               334444555432   68999999999999999


Q ss_pred             HHHHHHH
Q 028595          170 DAAIKVV  176 (207)
Q Consensus       170 ~~i~~~~  176 (207)
                      +.+.+.+
T Consensus       219 ~~i~~~L  225 (233)
T cd01896         219 ERIWDKL  225 (233)
T ss_pred             HHHHHHh
Confidence            9998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd00880 Era_like Era (E

Probab=99.76  E-value=3.3e-18  Score=122.11  Aligned_cols=150  Identities=21%  Similarity=0.130  Sum_probs=102.7

Q ss_pred             EEecccccceeeeeeeccCCCCC-cc-ccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc-------cceecCCcE
Q 028595            9 CLFATQVTSFLLYVLSVSGRSSI-WD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR-------PLSYRGADV   79 (207)
Q Consensus         9 iiG~~~~GgKssli~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~~~d~   79 (207)
                      ++|..++| ||||++++++.... .. ..++...........+. ...+.+||+||........       ..++..+|+
T Consensus         1 i~G~~gsG-Kstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~   78 (163)
T cd00880           1 LFGRTNAG-KSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADL   78 (163)
T ss_pred             CcCCCCCC-HHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence            58999999 99999999977543 22 22222222232333221 4678999999987665433       347789999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHH---HHHHHHHHhCCcEEEE
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA---QGEELRKQIGASYYIE  156 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~~~~~~e  156 (207)
                      +++|+|.++..+.... . +......  .+.|+++++||.|+......          ...   .........+ .++++
T Consensus        79 il~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~  143 (163)
T cd00880          79 ILFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEEE----------EELLELRLLILLLLLG-LPVIA  143 (163)
T ss_pred             EEEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhhH----------HHHHHHHHhhcccccC-CceEE
Confidence            9999999998888776 2 3333332  48999999999998765431          111   1122222223 48999


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +||.++.|++++++++.+.
T Consensus       144 ~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         144 VSALTGEGIDELREALIEA  162 (163)
T ss_pred             EeeeccCCHHHHHHHHHhh
Confidence            9999999999999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=1.1e-17  Score=118.92  Aligned_cols=153  Identities=18%  Similarity=0.207  Sum_probs=117.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc--------cccC----ceeeeeeeEEEECCeEEEEEEEeCCCCcccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW--------DYIP----TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP   71 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~--------~~~~----t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~   71 (207)
                      ..||+++|..++| |||++.+++......        ++..    |+.-+|-. ..++ ....+.++|||||++++.+|.
T Consensus        10 ~~KIvv~G~~~ag-KtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~~-~~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229          10 ETKIVVIGPVGAG-KTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IELD-EDTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             ceeEEEEcccccc-hhhHHHHhhccccceeeccccccccccccceeEeecccc-eEEc-CcceEEEecCCCcHHHHHHHH
Confidence            4699999999999 999999998776421        1111    11222211 1122 235688999999999999999


Q ss_pred             ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh--
Q 028595           72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI--  149 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--  149 (207)
                      .+++++.+.|++.|.+.+..+ +. ...++.+....+ +|++|+.||.|+.+..            ..++.+++....  
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~------------ppe~i~e~l~~~~~  151 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL------------PPEKIREALKLELL  151 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC------------CHHHHHHHHHhccC
Confidence            999999999999999999988 44 466666665433 9999999999998776            455655555554  


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      .. +.++.+|.++++..+.+..+...
T Consensus       152 ~~-~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         152 SV-PVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CC-ceeeeecccchhHHHHHHHHHhh
Confidence            44 89999999999999999998877

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.74  E-value=3.8e-18  Score=126.30  Aligned_cols=160  Identities=19%  Similarity=0.221  Sum_probs=107.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccc-------------cC---ceeeee-eeEEEEC--CeEEEEEEEeCCCCc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDY-------------IP---TVFDNF-SANVVAE--GTTVNLGLWDTAGQE   64 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~-------------~~---t~~~~~-~~~~~~~--~~~~~l~i~D~~G~~   64 (207)
                      ..+|+++|..++| ||||+.+|+...-....             .+   ..+.+. .......  .....+.++|+||+.
T Consensus         3 ~~~I~i~G~~~sG-KTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSG-KTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             EEEEEEECCCCCC-cEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4689999999999 99999999844311000             00   001111 1122222  445789999999999


Q ss_pred             cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH-
Q 028595           65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-  143 (207)
Q Consensus        65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-  143 (207)
                      .|.......+..+|++|+|.|+.+....+..  .++..+...  ++|++++.||+|+...+-.         ...++.. 
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~~~~---------~~~~~~~~  148 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEKELE---------EIIEEIKE  148 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHHHHH---------HHHHHHHH
T ss_pred             ceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhhhHH---------HHHHHHHH
Confidence            9877777778899999999999976554443  444444443  7899999999999733210         0122222 


Q ss_pred             HHHHHhC-----CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          144 ELRKQIG-----ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       144 ~~~~~~~-----~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      .+.+.++     ..+++.+||.+|.|++++++.+.+.++
T Consensus       149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            4444443     247999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.74  E-value=1e-17  Score=120.95  Aligned_cols=154  Identities=15%  Similarity=0.033  Sum_probs=100.0

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCcc----------cccccccee
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED----------YNRLRPLSY   74 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~~   74 (207)
                      .|+++|..++| ||||+++++++.+...+.++.+.+... .+..++   .+.+|||||...          +......|+
T Consensus         1 ~i~l~G~~g~G-KTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~   76 (170)
T cd01876           1 EIAFAGRSNVG-KSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL   76 (170)
T ss_pred             CEEEEcCCCCC-HHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence            48999999999 999999999776666666665544332 222232   788999999433          233334444


Q ss_pred             c---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-HhC
Q 028595           75 R---GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIG  150 (207)
Q Consensus        75 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~  150 (207)
                      .   +.+++++++|.++..+....  .....+...  +.|+++++||+|+......        ...........+ ...
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~l~~~~~  144 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSEL--------AKALKEIKKELKLFEI  144 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHH--------HHHHHHHHHHHHhccC
Confidence            4   35788999998876332221  222233322  6899999999998543221        002222333333 233


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      ..+++++||+++.++.++++++.+.
T Consensus       145 ~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         145 DPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHh
Confidence            3488999999999999999999765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10218 GTP-binding protein; Provisional

Probab=99.73  E-value=3.8e-17  Score=139.02  Aligned_cols=164  Identities=13%  Similarity=0.025  Sum_probs=116.0

Q ss_pred             ccceeEEEEecccccceeeeeeeccC--CCCCccc------------cCceeeee-eeEEEECCeEEEEEEEeCCCCccc
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSG--RSSIWDY------------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY   66 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~--~~~~~~~------------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~   66 (207)
                      +...+|+++|..++| ||||+++|+.  +.+...+            ..+.+.++ .....+....+.+++|||||+.+|
T Consensus         3 ~~iRnIaIiGh~d~G-KTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df   81 (607)
T PRK10218          3 EKLRNIAIIAHVDHG-KTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF   81 (607)
T ss_pred             CCceEEEEECCCCCc-HHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh
Confidence            345799999999999 9999999986  3332211            12233333 334455556789999999999999


Q ss_pred             cccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595           67 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR  146 (207)
Q Consensus        67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~  146 (207)
                      ...+..+++.+|++++|+|+++....+..  .++..+..  .++|.+++.||+|+...+..         ...++...+.
T Consensus        82 ~~~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~--~gip~IVviNKiD~~~a~~~---------~vl~ei~~l~  148 (607)
T PRK10218         82 GGEVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFA--YGLKPIVVINKVDRPGARPD---------WVVDQVFDLF  148 (607)
T ss_pred             HHHHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHH--cCCCEEEEEECcCCCCCchh---------HHHHHHHHHH
Confidence            99999999999999999999885444332  23333333  37899999999998754321         0223444443


Q ss_pred             HH-------hCCcEEEEeccCCCC----------CHHHHHHHHHHHHhCCC
Q 028595          147 KQ-------IGASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       147 ~~-------~~~~~~~e~Sa~~~~----------~i~~~f~~i~~~~~~~~  180 (207)
                      ..       ..+ |++.+||.+|.          ++..+|+.++..+..+.
T Consensus       149 ~~l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        149 VNLDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             hccCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence            22       223 78999999998          58999999999887664

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.72  E-value=2.2e-16  Score=127.04  Aligned_cols=163  Identities=18%  Similarity=0.160  Sum_probs=120.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc-----------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR-----------   70 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-----------   70 (207)
                      .+||+++|.||+| ||||+|++++..-  ......|+.+.....+..+++.  +.++||+|-.+-....           
T Consensus       178 ~ikiaiiGrPNvG-KSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         178 PIKIAIIGRPNVG-KSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             ceEEEEEeCCCCC-chHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence            5899999999999 9999999998863  3444455555556677777765  4699999954322211           


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      ...+..+|++++|.|.+.+-+-++.  .....+.+.  +.+++++.||+|+.+.++.      ......++........+
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~~------~~~~~k~~i~~~l~~l~  324 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDEA------TMEEFKKKLRRKLPFLD  324 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchhh------HHHHHHHHHHHHhcccc
Confidence            2345679999999999999888885  667777664  8999999999998775322      00012234444555567


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +.+.+.+||+++.++.++|+.+.......
T Consensus       325 ~a~i~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         325 FAPIVFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             CCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence            77999999999999999999998777543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.72  E-value=4.4e-17  Score=139.26  Aligned_cols=155  Identities=15%  Similarity=0.122  Sum_probs=103.8

Q ss_pred             eEEEEecccccceeeeeeeccCCC---CCccc--cCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS---SIWDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      -|+++|..++| ||||+++|++..   +.++.  -.|+...|......++  ..+.+|||||+++|.......+.++|++
T Consensus         2 ii~~~GhvdhG-KTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~   78 (614)
T PRK10512          2 IIATAGHVDHG-KTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHA   78 (614)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence            37899999999 999999998643   22232  2222222211111133  3478999999999866555667889999


Q ss_pred             EEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC--cEE
Q 028595           81 VLAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA--SYY  154 (207)
Q Consensus        81 i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~  154 (207)
                      ++|+|+++   +++.+.+     ..+...  ++| +++|+||+|+.+....        ....+++++++...++  .++
T Consensus        79 lLVVda~eg~~~qT~ehl-----~il~~l--gi~~iIVVlNKiDlv~~~~~--------~~v~~ei~~~l~~~~~~~~~i  143 (614)
T PRK10512         79 LLVVACDDGVMAQTREHL-----AILQLT--GNPMLTVALTKADRVDEARI--------AEVRRQVKAVLREYGFAEAKL  143 (614)
T ss_pred             EEEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCccCCHHHH--------HHHHHHHHHHHHhcCCCCCcE
Confidence            99999987   4444443     222222  455 5799999999653221        0023455666665553  489


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +++||++|.|++++++.|......
T Consensus       144 i~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        144 FVTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             EEEeCCCCCCCHHHHHHHHHhhcc
Confidence            999999999999999999875543

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.72  E-value=4.1e-18  Score=139.56  Aligned_cols=165  Identities=21%  Similarity=0.275  Sum_probs=127.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .-.+|+++|+.++| |||||-++....|.+.. |...++......+....+...|.|++..+..+.....-++.||++.+
T Consensus         8 kdVRIvliGD~G~G-KtSLImSL~~eef~~~V-P~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVG-KTSLIMSLLEEEFVDAV-PRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             cceEEEEECCCCcc-HHHHHHHHHhhhccccc-cccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            35789999999999 99999999999887553 33334444444444445668999998766655555667889999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHH-HHHHHHHHhC-CcEEEEe
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA-QGEELRKQIG-ASYYIEC  157 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~-~~~~~e~  157 (207)
                      +|+++++++++.+..+|++++++..   .++|+|+||||.|......-          +.+ ....+-..+. +..+++|
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----------s~e~~~~pim~~f~EiEtciec  155 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----------SDEVNTLPIMIAFAEIETCIEC  155 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----------chhHHHHHHHHHhHHHHHHHhh
Confidence            9999999999999999999999887   68999999999998765431          222 2333333332 2246899


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ||++..++.++|...-++++.+
T Consensus       156 SA~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  156 SALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             hhhhhhhhHhhhhhhhheeecc
Confidence            9999999999999998888754

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.71  E-value=1.8e-17  Score=137.12  Aligned_cols=157  Identities=13%  Similarity=-0.036  Sum_probs=101.5

Q ss_pred             ceeEEEEecccccceeeeeeeccC--CCCCccc-----------------------------cCceeeeeeeEEEECCeE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG--RSSIWDY-----------------------------IPTVFDNFSANVVAEGTT   52 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~--~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~   52 (207)
                      ..+|+++|..++| ||||+.+|+.  +.+....                             ...++.+.. ...+....
T Consensus         7 ~~~v~i~Ghvd~G-KSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~-~~~~~~~~   84 (426)
T TIGR00483         7 HINVAFIGHVDHG-KSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA-HWKFETDK   84 (426)
T ss_pred             eeEEEEEeccCCc-HHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE-EEEEccCC
Confidence            4689999999999 9999999985  2222100                             011111111 12233345


Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  131 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~  131 (207)
                      +.+.+|||||++.|.......+..+|++++|+|+++.++.... ...++..... ....|+++++||+|+.+....    
T Consensus        85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVviNK~Dl~~~~~~----  159 (426)
T TIGR00483        85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LGINQLIVAINKMDSVNYDEE----  159 (426)
T ss_pred             eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEEEChhccCccHH----
Confidence            7899999999998866555667889999999999987543211 0111222222 224679999999999642210    


Q ss_pred             CCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHHHH
Q 028595          132 PGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF  169 (207)
Q Consensus       132 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f  169 (207)
                        ......++++.+++..++    .+++++||++|.|+.+++
T Consensus       160 --~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       160 --EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             --HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence              000134567778887763    379999999999998743

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.2e-17  Score=116.39  Aligned_cols=156  Identities=15%  Similarity=0.170  Sum_probs=118.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      +..|++++|-+|+| ||||++++.+.+. ..+.||...+ +..+.+.|  ++++.+|.+|+..-+..|+.|+..+|++++
T Consensus        19 K~gKllFlGLDNAG-KTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAG-KTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCc-hhhHHHHHccccc-cccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            46799999999999 9999999998884 4566776543 34455565  778899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH------HHHHHhC-----
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE------ELRKQIG-----  150 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~-----  150 (207)
                      .+|+-+.+.+.+....+...+.... ..+|+++.+||+|.+..-            ..++.+      .++-..+     
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~~~  161 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVNLT  161 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhccccccccc
Confidence            9999999999998666655554433 689999999999987653            222221      1221111     


Q ss_pred             ---C--cEEEEeccCCCCCHHHHHHHHHHH
Q 028595          151 ---A--SYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       151 ---~--~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                         .  ...+.||...+.+.-+.|.|+...
T Consensus       162 ~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  162 DSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             CCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence               1  245678998888888888887654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.71  E-value=1.1e-16  Score=129.15  Aligned_cols=152  Identities=20%  Similarity=0.203  Sum_probs=113.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc--------cce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   73 (207)
                      -+|++++|.||+| ||||+|.|++..-  ..+...|+.+.....+.++|  +.+.+.||+|-.......        ...
T Consensus       217 G~kvvIiG~PNvG-KSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         217 GLKVVIIGRPNVG-KSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             CceEEEECCCCCc-HHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4699999999999 9999999998863  45556666666677888898  778899999965443332        345


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      ++.||.+++|+|.+.+.+-.+.  ..+.   ...++.|+++|.||.|+......               ... +..+..+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~~---------------~~~-~~~~~~~  352 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIEL---------------ESE-KLANGDA  352 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhccccccc---------------chh-hccCCCc
Confidence            7789999999999997444443  2222   22257999999999999765431               111 1122226


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++.+|+++++|++.+.+.|.+.+...
T Consensus       353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         353 IISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             eEEEEecCccCHHHHHHHHHHHHhhc
Confidence            89999999999999999998888665

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.70  E-value=1.3e-16  Score=135.67  Aligned_cols=161  Identities=14%  Similarity=0.100  Sum_probs=101.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCcccc----CceeeeeeeEEEE---CCeEE----------EEEEEeCCCCcccc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYI----PTVFDNFSANVVA---EGTTV----------NLGLWDTAGQEDYN   67 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~----~t~~~~~~~~~~~---~~~~~----------~l~i~D~~G~~~~~   67 (207)
                      .-|+++|..++| ||||+++|.+........    +++|..+...-..   .+..+          .+.+|||||++.|.
T Consensus         7 p~V~i~Gh~~~G-KTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          7 PIVVVLGHVDHG-KTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             cEEEEECCCCCC-HHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            358899999999 999999998765443322    2333332111100   11111          16899999999999


Q ss_pred             ccccceecCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcc--c--C--
Q 028595           68 RLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP--V--T--  138 (207)
Q Consensus        68 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~--v--~--  138 (207)
                      .++...+..+|++++|+|+++   +++++.+ . +   +..  .++|+++++||+|+.+....  ....+..  +  .  
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~-~---~~~--~~vpiIvviNK~D~~~~~~~--~~~~~~~e~~~~~~~  156 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINEGFQPQTIEAI-N-I---LKR--RKTPFVVAANKIDRIPGWKS--TEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H-H---HHH--cCCCEEEEEECcCCchhhhh--hcCchHHHHHhhhhH
Confidence            888888899999999999997   6666655 2 2   222  37999999999998532110  0000000  0  0  


Q ss_pred             --H-------HHHHHHHHHh--------------CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          139 --T-------AQGEELRKQI--------------GASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       139 --~-------~~~~~~~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                        .       .+...+....              +..+++++||++|+|+++++..+...
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence              0       0011111222              22478999999999999999887643

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.70  E-value=6.4e-17  Score=137.69  Aligned_cols=161  Identities=13%  Similarity=0.080  Sum_probs=112.6

Q ss_pred             eeEEEEecccccceeeeeeeccCC--CCCcccc------------Cceeeee-eeEEEECCeEEEEEEEeCCCCcccccc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR--SSIWDYI------------PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL   69 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~--~~~~~~~------------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~   69 (207)
                      .+|+++|..++| ||||+.+|+..  .+.....            ..-|.+. .....+....+.+++|||||+++|...
T Consensus         2 RNIaIiGHvd~G-KTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         2 RNIAIIAHVDHG-KTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE   80 (594)
T ss_pred             cEEEEEcCCCCC-HHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence            589999999999 99999999852  2221110            0112222 223334445688999999999999888


Q ss_pred             ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH-
Q 028595           70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-  148 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  148 (207)
                      +..+++.+|++++|+|+++....+.  ..|+..+...  ++|+++++||+|+...+..         ...++...+... 
T Consensus        81 v~~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~~--~ip~IVviNKiD~~~a~~~---------~v~~ei~~l~~~~  147 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGPMPQT--RFVLKKALEL--GLKPIVVINKIDRPSARPD---------EVVDEVFDLFAEL  147 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHHC--CCCEEEEEECCCCCCcCHH---------HHHHHHHHHHHhh
Confidence            8999999999999999987433222  3455555443  7899999999998654310         022344444432 


Q ss_pred             ------hCCcEEEEeccCCCC----------CHHHHHHHHHHHHhCCC
Q 028595          149 ------IGASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       149 ------~~~~~~~e~Sa~~~~----------~i~~~f~~i~~~~~~~~  180 (207)
                            +.+ +++.+||++|.          |+..+|+.+++.+..+.
T Consensus       148 g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       148 GADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             ccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence                  234 78999999995          89999999999887664

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.69  E-value=9.3e-17  Score=132.85  Aligned_cols=158  Identities=13%  Similarity=-0.017  Sum_probs=98.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CCcc------------------------ccC---ceeeee-eeEEEECCeEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWD------------------------YIP---TVFDNF-SANVVAEGTTV   53 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~------------------------~~~---t~~~~~-~~~~~~~~~~~   53 (207)
                      ..+|+++|..++| ||||+++|+...  +...                        ..+   .-|.+. .....++...+
T Consensus         6 ~~~v~iiGh~d~G-KSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~   84 (425)
T PRK12317          6 HLNLAVIGHVDHG-KSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY   84 (425)
T ss_pred             EEEEEEECCCCCC-hHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence            4689999999999 999999998332  1110                        000   011111 11223334457


Q ss_pred             EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCC
Q 028595           54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG  133 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~  133 (207)
                      .+.+|||||++.|.......+..+|++++|+|+++..........++..+... ...|+++++||+|+.+....      
T Consensus        85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~------  157 (425)
T PRK12317         85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEK------  157 (425)
T ss_pred             EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHH------
Confidence            89999999998876554455788999999999987312211111222233222 23469999999999752210      


Q ss_pred             CcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHHHH
Q 028595          134 LVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF  169 (207)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f  169 (207)
                      ......+++..+++..++    .+++++||++|+|+++++
T Consensus       158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            000133566677766664    379999999999998744

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.69  E-value=8.6e-17  Score=122.85  Aligned_cols=173  Identities=14%  Similarity=0.056  Sum_probs=116.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc------------cccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED------------YNRLRP   71 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~------------~~~~~~   71 (207)
                      ...|++||.+|+| ||||.|.+++.+..+....+.+.+....-.+.....++.++||||--.            ..+...
T Consensus        72 ~L~vavIG~PNvG-KStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~  150 (379)
T KOG1423|consen   72 SLYVAVIGAPNVG-KSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR  150 (379)
T ss_pred             EEEEEEEcCCCcc-hhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence            3579999999999 999999999999877666666656655555555678999999999321            122334


Q ss_pred             ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC---CCCCcccC---HHHHHHH
Q 028595           72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD---HPGLVPVT---TAQGEEL  145 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~---~~~~~~v~---~~~~~~~  145 (207)
                      ..+.+||+++.|+|+++.-...+  ...+..++.+ .++|-+++.||+|.......+-+   ......+.   .+-.+++
T Consensus       151 ~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f  227 (379)
T KOG1423|consen  151 DAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF  227 (379)
T ss_pred             HHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence            56778999999999997444433  3445555554 48999999999998664432111   00000011   1111222


Q ss_pred             HHHh------------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          146 RKQI------------GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       146 ~~~~------------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ...-            ++..+|.+||++|+||+++-++|+.++...+
T Consensus       228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence            1111            1223788999999999999999999987653

>cd04167 Snu114p Snu114p subfamily

Probab=99.68  E-value=6.7e-17  Score=121.90  Aligned_cols=113  Identities=19%  Similarity=0.171  Sum_probs=80.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCcc-----------ccCc------eeeee-ee--EEEE---CCeEEEEEEEeCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWD-----------YIPT------VFDNF-SA--NVVA---EGTTVNLGLWDTA   61 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~-----------~~~t------~~~~~-~~--~~~~---~~~~~~l~i~D~~   61 (207)
                      .+|+++|..++| ||||+++|+.......           +..+      .+..+ ..  .+..   ++..+.+.+||||
T Consensus         1 rnv~iiG~~~~G-KTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtp   79 (213)
T cd04167           1 RNVAIAGHLHHG-KTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTP   79 (213)
T ss_pred             CcEEEEcCCCCC-HHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECC
Confidence            379999999999 9999999986543211           1111      11111 11  1111   3567899999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      |++.+......++..+|++++|+|+++..+...  ..++..+..  .+.|+++++||+|+.
T Consensus        80 G~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          80 GHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             CCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence            999998888888999999999999988766654  344444432  369999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.67  E-value=4.3e-16  Score=113.13  Aligned_cols=156  Identities=16%  Similarity=0.145  Sum_probs=114.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeE-EEECCeEEEEEEEeCCC----------Cccccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAG----------QEDYNRLRPL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~D~~G----------~~~~~~~~~~   72 (207)
                      ..-|+++|.+||| ||||||++++++-......|.|.+.... +.+++.   +.+.|.||          ++.+..+..+
T Consensus        24 ~~EIaF~GRSNVG-KSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          24 LPEIAFAGRSNVG-KSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CcEEEEEccCccc-HHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            3479999999999 9999999999887777788888877664 444443   78999999          4555666677


Q ss_pred             eecC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           73 SYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        73 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      |++.   -.+++++.|+...-.-.+.  +.++.+...  ++|+++++||+|.....+           ........++.+
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~-----------~~k~l~~v~~~l  164 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSE-----------RNKQLNKVAEEL  164 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhH-----------HHHHHHHHHHHh
Confidence            7764   4688899998876555443  445555443  899999999999876544           233334444433


Q ss_pred             CC----c-EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          150 GA----S-YYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       150 ~~----~-~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +.    . .++.+|+.++.|++++...|.+.+..
T Consensus       165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             cCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            32    1 16779999999999999999887654

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.67  E-value=3.4e-16  Score=131.31  Aligned_cols=155  Identities=14%  Similarity=0.124  Sum_probs=118.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc------ccccceec-
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSYR-   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~-   75 (207)
                      ..+|+++|+||+| ||||.|++++.+..-..-|-++.+. .-.+...+  ..+++.|+||--...      ...++|+. 
T Consensus         3 ~~~valvGNPNvG-KTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           3 KLTVALVGNPNVG-KTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             cceEEEecCCCcc-HHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            4569999999999 9999999999886555555555444 22455455  448899999944332      23344543 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           76 -GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        76 -~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                       +.|+++-|.|.+|.+..-.+.-++++.      +.|++++.|++|..+.+.           ..-+.+++.+.+|. |.
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~------g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PV  141 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYLTLQLLEL------GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PV  141 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHHHHHHHHc------CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CE
Confidence             479999999999988777763333332      899999999999987765           45677889999999 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++||++|.|++++...+++....+
T Consensus       142 v~tvA~~g~G~~~l~~~i~~~~~~~  166 (653)
T COG0370         142 VPTVAKRGEGLEELKRAIIELAESK  166 (653)
T ss_pred             EEEEeecCCCHHHHHHHHHHhcccc
Confidence            9999999999999999998765544

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.67  E-value=2.3e-16  Score=129.51  Aligned_cols=159  Identities=15%  Similarity=0.095  Sum_probs=104.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccC------ceeee-----------------eeeEEEECC------eEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIP------TVFDN-----------------FSANVVAEG------TTVN   54 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~------t~~~~-----------------~~~~~~~~~------~~~~   54 (207)
                      ..+|+++|..++| ||||+++|.+.... .+..      |+...                 |......++      ....
T Consensus         4 ~~~i~iiG~~~~G-KSTL~~~Lt~~~~d-~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         4 EVNIGMVGHVDHG-KTTLTKALTGVWTD-THSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             eEEEEEEccCCCC-HHHHHHHHhCeecc-cCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            4689999999999 99999999754221 1111      11100                 101001011      1467


Q ss_pred             EEEEeCCCCccccccccceecCCcEEEEEEeCCChh----hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC
Q 028595           55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA----SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  130 (207)
Q Consensus        55 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~  130 (207)
                      +.+||+||+++|...+...+..+|++++|+|+++..    +.+.+     ..+... ...|+++++||+|+.+....   
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-----~~l~~~-gi~~iIVvvNK~Dl~~~~~~---  152 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-----MALEII-GIKNIVIVQNKIDLVSKEKA---  152 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-----HHHHHc-CCCeEEEEEEccccCCHHHH---
Confidence            899999999999877777777899999999999643    33333     222221 23579999999999754321   


Q ss_pred             CCCCcccCHHHHHHHHHHh---CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          131 HPGLVPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       131 ~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                           ....+++..+.+..   +. +++++||++|+|+++++++|...+..+
T Consensus       153 -----~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~~~  198 (406)
T TIGR03680       153 -----LENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIPTP  198 (406)
T ss_pred             -----HHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCCCC
Confidence                 00224444554443   44 899999999999999999999876543

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.66  E-value=3e-16  Score=117.92  Aligned_cols=153  Identities=16%  Similarity=0.027  Sum_probs=93.7

Q ss_pred             eEEEEecccccceeeeeeeccCCC--CCccc------------------------cCc---eeeee-eeEEEECCeEEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS--SIWDY------------------------IPT---VFDNF-SANVVAEGTTVNL   55 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~--~~~~~------------------------~~t---~~~~~-~~~~~~~~~~~~l   55 (207)
                      +|+++|..++| ||||+++|+...  .....                        .+.   -+.+. ............+
T Consensus         1 ~i~iiG~~~~G-KStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDG-KSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF   79 (208)
T ss_pred             CEEEEECCCCC-HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence            58999999999 999999997432  11000                        000   00011 0111111223567


Q ss_pred             EEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCc
Q 028595           56 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV  135 (207)
Q Consensus        56 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~  135 (207)
                      .+|||||++.+.......++.+|++++|+|+++....+..  .....+... ...++++|+||+|+......      ..
T Consensus        80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~------~~  150 (208)
T cd04166          80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEE------VF  150 (208)
T ss_pred             EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHH------HH
Confidence            8999999988766556678899999999999875433222  222222222 23457889999998643210      00


Q ss_pred             ccCHHHHHHHHHHhCC--cEEEEeccCCCCCHHHH
Q 028595          136 PVTTAQGEELRKQIGA--SYYIECSSKTQQNVKAV  168 (207)
Q Consensus       136 ~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~  168 (207)
                      .....+.+.+++.++.  .+++.+||++|.|+.+.
T Consensus       151 ~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         151 EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            0023456666777774  25899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.65  E-value=4.4e-16  Score=127.89  Aligned_cols=160  Identities=16%  Similarity=0.080  Sum_probs=101.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcccc------Cceeeee-----------------eeEEEEC--C----eEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYI------PTVFDNF-----------------SANVVAE--G----TTVN   54 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~------~t~~~~~-----------------~~~~~~~--~----~~~~   54 (207)
                      ..+|+++|..++| ||||+.+|.+.- .+...      -|+...+                 ......+  +    ....
T Consensus         9 ~~ni~v~Gh~d~G-KSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          9 EVNIGMVGHVDHG-KTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             cEEEEEEccCCCC-HHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            4689999999999 999999986532 11111      1111111                 0100011  1    1367


Q ss_pred             EEEEeCCCCccccccccceecCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC
Q 028595           55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  130 (207)
Q Consensus        55 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~  130 (207)
                      +.+|||||++.+..........+|++++|+|+++.    ++.+.+     ..+... ...|+++|+||+|+.+....   
T Consensus        87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-----~~l~~~-~i~~iiVVlNK~Dl~~~~~~---  157 (411)
T PRK04000         87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-----MALDII-GIKNIVIVQNKIDLVSKERA---  157 (411)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHc-CCCcEEEEEEeeccccchhH---
Confidence            89999999988765444445567999999999964    333332     122221 23478999999999754321   


Q ss_pred             CCCCcccCHHHHHHHHHHh--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          131 HPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       131 ~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                           ....++++.+++.+  ...+++++||++|.|++++++.|...+..+
T Consensus       158 -----~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~  203 (411)
T PRK04000        158 -----LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP  203 (411)
T ss_pred             -----HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence                 00224455555432  123899999999999999999998877543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.65  E-value=7e-16  Score=116.86  Aligned_cols=155  Identities=14%  Similarity=0.040  Sum_probs=97.0

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCc-----------------------eeeeeeeE--------------EEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPT-----------------------VFDNFSAN--------------VVA   48 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t-----------------------~~~~~~~~--------------~~~   48 (207)
                      ||+++|..++| ||||+++|..+.+.......                       .+-+....              -..
T Consensus         1 ~v~~~G~~~~G-Kttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   79 (224)
T cd04165           1 RVAVVGNVDAG-KSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC   79 (224)
T ss_pred             CEEEECCCCCC-HHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence            68999999999 99999999976654311100                       00000000              000


Q ss_pred             CCeEEEEEEEeCCCCcccccccccee--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595           49 EGTTVNLGLWDTAGQEDYNRLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH  126 (207)
Q Consensus        49 ~~~~~~l~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~  126 (207)
                      ......+.+.||||+++|.......+  ..+|++++|.|+.....-..  ..++..+...  ++|+++|.||+|+.+...
T Consensus        80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHHH
Confidence            11235688999999988854333333  36899999999887644443  3444454443  789999999999864332


Q ss_pred             cccCCCCCcccCHHHHHHHHHHh-------------------------CCcEEEEeccCCCCCHHHHHHHHH
Q 028595          127 YLADHPGLVPVTTAQGEELRKQI-------------------------GASYYIECSSKTQQNVKAVFDAAI  173 (207)
Q Consensus       127 ~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~e~Sa~~~~~i~~~f~~i~  173 (207)
                      .        ....++..++....                         ...|++.+||.+|+|++++.+.|.
T Consensus       156 ~--------~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         156 L--------QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             H--------HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1        00222233332211                         123889999999999999987764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.65  E-value=8.8e-16  Score=117.34  Aligned_cols=113  Identities=18%  Similarity=0.094  Sum_probs=79.7

Q ss_pred             eEEEEecccccceeeeeeeccCCCCC--------c-----cccC---ceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSI--------W-----DYIP---TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~--------~-----~~~~---t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      +|+++|..++| ||||+++++...-.        .     ++.+   ..+... .....+......+.+|||||+..+..
T Consensus         1 ni~i~G~~~~G-KTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~   79 (237)
T cd04168           1 NIGILAHVDAG-KTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA   79 (237)
T ss_pred             CEEEEcCCCCC-HHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH
Confidence            58999999999 99999999753110        0     0100   001111 11223333457899999999999988


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      .+..+++.+|++++|+|.++....+.  ..+...+...  ++|+++++||+|+..
T Consensus        80 ~~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~  130 (237)
T cd04168          80 EVERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccC
Confidence            88889999999999999998655433  3455555443  799999999999874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.64  E-value=8.8e-16  Score=114.42  Aligned_cols=170  Identities=13%  Similarity=0.061  Sum_probs=100.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceee---eeeeEEEECCeEEEEEEEeCCCCccccccccce-----ec
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFD---NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLS-----YR   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~-----~~   75 (207)
                      +.||+++|.+++| ||||+|.+++........++.+.   +........+....+.+|||||..........|     +.
T Consensus         1 ~~kI~i~G~~g~G-KSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAG-KSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCC-HHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            3689999999999 99999999986654322222221   001111111112368999999975432222223     56


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC--cccCHHH----HHHHHHHh
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQ----GEELRKQI  149 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~--~~v~~~~----~~~~~~~~  149 (207)
                      ++|+++++.+-    .+......|+..+.+.  +.|+++|+||+|+........ .+..  .....++    ........
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRS-KPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhcc-ccccccHHHHHHHHHHHHHHHHHHc
Confidence            78998888542    2333324666677664  689999999999853322100 0000  0001112    22222222


Q ss_pred             C--CcEEEEeccC--CCCCHHHHHHHHHHHHhCCCc
Q 028595          150 G--ASYYIECSSK--TQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       150 ~--~~~~~e~Sa~--~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +  ..++|.+|+.  .+.++..+.+.++..+..++.
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            2  3478899998  578999999999998876543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.63  E-value=1.2e-15  Score=113.32  Aligned_cols=149  Identities=15%  Similarity=0.128  Sum_probs=96.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCC--------C---ccccC---ceeeee-eeEEEECCeEEEEEEEeCCCCcccccc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSS--------I---WDYIP---TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL   69 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~--------~---~~~~~---t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~   69 (207)
                      .+|+++|..++| ||||+++|+....        .   -+..+   .-|.+. ...........++.+.||||+..+...
T Consensus         3 ~ni~iiGh~~~G-KTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           3 VNVGTIGHVDHG-KTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             EEEEEECCCCCC-HHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            689999999999 9999999975310        0   00000   011111 112223334567889999999887666


Q ss_pred             ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                      ....+..+|++++|+|++....-+.  ..++..+...  ++| ++++.||+|+....+.       .....+++..+...
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~-------~~~~~~~i~~~l~~  150 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEEL-------LELVEMEVRELLSK  150 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHH-------HHHHHHHHHHHHHH
Confidence            6667788999999999987533332  2334444432  566 7899999998643321       00123456667666


Q ss_pred             hCC----cEEEEeccCCCCCH
Q 028595          149 IGA----SYYIECSSKTQQNV  165 (207)
Q Consensus       149 ~~~----~~~~e~Sa~~~~~i  165 (207)
                      .++    .+++.+||++|.|+
T Consensus       151 ~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         151 YGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             hcccccCCeEEEeeCccccCC
Confidence            654    58999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.63  E-value=7.3e-16  Score=116.45  Aligned_cols=168  Identities=18%  Similarity=0.227  Sum_probs=105.1

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCcccc---CceeeeeeeEEEECCeEEEEEEEeCCCCccccc-----cccceecCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYI---PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-----LRPLSYRGA   77 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~~~   77 (207)
                      ||+++|..++| |||+.+.+..+-.+.++.   +|...+... +. ....+.+++||+|||..+-.     .....++++
T Consensus         1 KiLLmG~~~SG-KTSi~~vIF~~~~p~dT~~L~~T~~ve~~~-v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v   77 (232)
T PF04670_consen    1 KILLMGPRRSG-KTSIRSVIFHKYSPRDTLRLEPTIDVEKSH-VR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV   77 (232)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHS---GGGGGG-----SEEEEE-EE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred             CEEEEcCCCCC-hhhHHHHHHcCCCchhccccCCcCCceEEE-Ee-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence            79999999999 999999988775443322   443322211 11 12347899999999975533     346778999


Q ss_pred             cEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC--CcE
Q 028595           78 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASY  153 (207)
Q Consensus        78 d~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~  153 (207)
                      .++|+|+|+.+.+-.+.+  ....+..+.+.+|++.+-++.+|.|+..+....    .......+.....+...+  ...
T Consensus        78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~----~~~~~~~~~i~~~~~~~~~~~~~  153 (232)
T PF04670_consen   78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDERE----EIFRDIQQRIRDELEDLGIEDIT  153 (232)
T ss_dssp             SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHH----HHHHHHHHHHHHHHHHTT-TSEE
T ss_pred             CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHH----HHHHHHHHHHHHHhhhccccceE
Confidence            999999999955433333  133445556677999999999999986543210    000002233444455555  127


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ++.||.-+ +.+-++|..+++.+++..+
T Consensus       154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  154 FFLTSIWD-ESLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             EEEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred             EEeccCcC-cHHHHHHHHHHHHHcccHH
Confidence            88899887 7999999999999987644

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.62  E-value=3e-15  Score=114.99  Aligned_cols=155  Identities=15%  Similarity=0.194  Sum_probs=109.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECCeEEEEEEEeCCCC----ccccccccce---ec
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----EDYNRLRPLS---YR   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----~~~~~~~~~~---~~   75 (207)
                      +.-|.+||.||+| ||||++.+...+- ...|.-|+-....-.+..++ -.++.+-|+||-    ..-+.+-..|   +.
T Consensus       196 iadvGLVG~PNAG-KSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiE  273 (366)
T KOG1489|consen  196 IADVGLVGFPNAG-KSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIE  273 (366)
T ss_pred             ecccceecCCCCc-HHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHH
Confidence            4568899999999 9999999987763 33444333222222333333 233889999983    2334444444   45


Q ss_pred             CCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           76 GADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        76 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      .++..+||.|++..   +.++.+ ..+..+++.+.   .+.|.++|+||+|+++..             ....+++++.+
T Consensus       274 R~~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~l  339 (366)
T KOG1489|consen  274 RCKGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRL  339 (366)
T ss_pred             hhceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHc
Confidence            69999999999998   777776 55555555443   589999999999986432             23357788887


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHH
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      .-...+++||+++++++++...+-+
T Consensus       340 q~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  340 QNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             CCCcEEEeeeccccchHHHHHHHhh
Confidence            7645899999999999999987754

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.60  E-value=9.3e-15  Score=115.76  Aligned_cols=80  Identities=15%  Similarity=0.074  Sum_probs=57.0

Q ss_pred             EEEEecccccceeeeeeeccCCCCC------ccccCceeeeeeeE----------------EEECC-eEEEEEEEeCCCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSI------WDYIPTVFDNFSAN----------------VVAEG-TTVNLGLWDTAGQ   63 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~------~~~~~t~~~~~~~~----------------~~~~~-~~~~l~i~D~~G~   63 (207)
                      |+++|.+++| ||||+|++++....      ..+.|++|..+...                ...++ ..+.+++||+||.
T Consensus         1 i~ivG~pnvG-KStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl   79 (318)
T cd01899           1 IGLVGKPNAG-KSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL   79 (318)
T ss_pred             CEEECCCCCC-HHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence            5899999999 99999999988743      12234444333211                11233 3478999999997


Q ss_pred             ----ccccccccce---ecCCcEEEEEEeCC
Q 028595           64 ----EDYNRLRPLS---YRGADVFVLAFSLV   87 (207)
Q Consensus        64 ----~~~~~~~~~~---~~~~d~~i~v~d~~   87 (207)
                          +.+.++.+.+   +++||++++|+|++
T Consensus        80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          80 VPGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence                5556665554   88999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.59  E-value=9.8e-15  Score=110.26  Aligned_cols=113  Identities=13%  Similarity=0.075  Sum_probs=78.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCC--CCccc------cCce------eeee---eeEEEE--------CCeEEEEEEEe
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS--SIWDY------IPTV------FDNF---SANVVA--------EGTTVNLGLWD   59 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~--~~~~~------~~t~------~~~~---~~~~~~--------~~~~~~l~i~D   59 (207)
                      .+|+++|...+| ||||+.+|+...  .....      ..+.      +.+.   ...+..        ++..+.+.+||
T Consensus         1 RNvaiiGhvd~G-KTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiD   79 (222)
T cd01885           1 RNICIIAHVDHG-KTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLID   79 (222)
T ss_pred             CeEEEECCCCCC-HHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEEC
Confidence            379999999999 999999997432  11000      0000      0000   001112        24578999999


Q ss_pred             CCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        60 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      |||++.|......+++.+|++++|+|+++..+.+..  ..+.....  .++|+++++||+|+.
T Consensus        80 TPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          80 SPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCcc
Confidence            999999999889999999999999999987666653  23333322  268999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK12736 elongation factor Tu; Reviewed

Probab=99.59  E-value=5.2e-15  Score=121.15  Aligned_cols=164  Identities=18%  Similarity=0.146  Sum_probs=104.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc------ccc-----C---ceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW------DYI-----P---TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~------~~~-----~---t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      ..+|+++|..++| ||||+++|++.....      .+.     +   .-|.+. ............+.+|||||+++|..
T Consensus        12 ~~ni~i~Ghvd~G-KSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~   90 (394)
T PRK12736         12 HVNIGTIGHVDHG-KTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVK   90 (394)
T ss_pred             eeEEEEEccCCCc-HHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHH
Confidence            4679999999999 999999998531100      000     0   111111 11223333445778999999988765


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      .....+..+|++++|+|+++...-+..  .++..+...  ++| ++++.||+|+.+..+..       ....++...++.
T Consensus        91 ~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~-------~~i~~~i~~~l~  159 (394)
T PRK12736         91 NMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEELL-------ELVEMEVRELLS  159 (394)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHHHH-------HHHHHHHHHHHH
Confidence            555556778999999999874333222  233333332  677 67899999987433210       002246667776


Q ss_pred             HhCC----cEEEEeccCCCC--------CHHHHHHHHHHHHhCC
Q 028595          148 QIGA----SYYIECSSKTQQ--------NVKAVFDAAIKVVIKP  179 (207)
Q Consensus       148 ~~~~----~~~~e~Sa~~~~--------~i~~~f~~i~~~~~~~  179 (207)
                      ..++    .+++.+||++|.        ++.++++.+.+.+..+
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~  203 (394)
T PRK12736        160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP  203 (394)
T ss_pred             HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC
Confidence            6664    479999999983        5778888877766533

>cd01850 CDC_Septin CDC/Septin

Probab=99.59  E-value=1.1e-14  Score=113.58  Aligned_cols=145  Identities=12%  Similarity=0.039  Sum_probs=93.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCcc----------ccCceeeee-eeEEEECCeEEEEEEEeCCCCccc-----
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWD----------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY-----   66 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~----------~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~-----   66 (207)
                      ..++|+++|.+++| ||||+|+|++..+...          ..+|..... ...+..+|..+.+.+|||||....     
T Consensus         3 ~~f~I~vvG~sg~G-KSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           3 FQFNIMVVGESGLG-KSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             cEEEEEEEcCCCCC-HHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence            56899999999999 9999999998876543          344443332 445566788899999999993221     


Q ss_pred             ---------------------cccccceecC--CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           67 ---------------------NRLRPLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        67 ---------------------~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                                           ...+...+.+  +|+++++.+.+.. ........++..+..   .+|+++|+||+|+..
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~  157 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK---RVNIIPVIAKADTLT  157 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc---cCCEEEEEECCCcCC
Confidence                                 1112244554  5566666665531 111111234444443   689999999999865


Q ss_pred             CcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595          124 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus       124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ..+.        ......+.+.++.+++ ++|.+....
T Consensus       158 ~~e~--------~~~k~~i~~~l~~~~i-~~~~~~~~~  186 (276)
T cd01850         158 PEEL--------KEFKQRIMEDIEEHNI-KIYKFPEDE  186 (276)
T ss_pred             HHHH--------HHHHHHHHHHHHHcCC-ceECCCCCc
Confidence            3221        0245667788888887 777766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.58  E-value=2.3e-15  Score=113.95  Aligned_cols=150  Identities=13%  Similarity=-0.022  Sum_probs=91.3

Q ss_pred             eEEEEecccccceeeeeeeccCCC--CCc------------------------cccCc---eeeee-eeEEEECCeEEEE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS--SIW------------------------DYIPT---VFDNF-SANVVAEGTTVNL   55 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~--~~~------------------------~~~~t---~~~~~-~~~~~~~~~~~~l   55 (207)
                      +|+++|..++| ||||+.+|+...  ...                        ++.+.   -|.+. .....+......+
T Consensus         1 nv~i~Gh~~~G-KttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAG-KSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRF   79 (219)
T ss_pred             CEEEecCCCCC-hHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEE
Confidence            48999999999 999999986321  000                        00000   01111 1112222335788


Q ss_pred             EEEeCCCCccccccccceecCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC---c
Q 028595           56 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED---K  125 (207)
Q Consensus        56 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~---~  125 (207)
                      .+|||||+..+.......+..+|++++|+|+++..       ..+.. ..+ ...... ...|+++++||+|+...   .
T Consensus        80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLARTL-GVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHHHc-CCCeEEEEEEccccccccccH
Confidence            99999999877666666677899999999999842       11211 222 222221 24689999999999742   1


Q ss_pred             ccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHH
Q 028595          126 HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVK  166 (207)
Q Consensus       126 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~  166 (207)
                      ..       .....+++..+.+.++.    .+++++||++|.|++
T Consensus       157 ~~-------~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ER-------YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HH-------HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            10       00022334445555554    379999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12735 elongation factor Tu; Reviewed

Probab=99.58  E-value=8.1e-15  Score=120.09  Aligned_cols=162  Identities=14%  Similarity=0.083  Sum_probs=102.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCC-------CCC--ccccC-----ceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR-------SSI--WDYIP-----TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~-------~~~--~~~~~-----t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      ..+|+++|..++| ||||+++|++.       .+.  .....     .-|.+. ...........++.++||||++.|..
T Consensus        12 ~~~i~iiGhvd~G-KSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~   90 (396)
T PRK12735         12 HVNVGTIGHVDHG-KTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK   90 (396)
T ss_pred             eEEEEEECcCCCC-HHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence            3579999999999 99999999852       110  00000     011111 11222333345678999999988765


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-vv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      .....+..+|++++|+|+.+....+.  ..++..+..  .++|.+ ++.||+|+.+..+.       .....+++..+++
T Consensus        91 ~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~-------~~~~~~ei~~~l~  159 (396)
T PRK12735         91 NMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEEL-------LELVEMEVRELLS  159 (396)
T ss_pred             HHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcchHHH-------HHHHHHHHHHHHH
Confidence            55566778999999999987433332  233334433  267855 68999999743221       0012346777777


Q ss_pred             HhCC----cEEEEeccCCCC----------CHHHHHHHHHHHHh
Q 028595          148 QIGA----SYYIECSSKTQQ----------NVKAVFDAAIKVVI  177 (207)
Q Consensus       148 ~~~~----~~~~e~Sa~~~~----------~i~~~f~~i~~~~~  177 (207)
                      .++.    .+++++||.++.          ++.++++.+...+.
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            7653    478999999984          57777777776654

>PRK13351 elongation factor G; Reviewed

Probab=99.57  E-value=1.1e-14  Score=127.05  Aligned_cols=114  Identities=17%  Similarity=0.144  Sum_probs=82.2

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCC-------------CCcc-------ccCceeeeeeeEEEECCeEEEEEEEeCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRS-------------SIWD-------YIPTVFDNFSANVVAEGTTVNLGLWDTA   61 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~-------------~~~~-------~~~t~~~~~~~~~~~~~~~~~l~i~D~~   61 (207)
                      +...+|+++|..++| ||||+++|+...             ...+       +..|+....   ..+....+.+++||||
T Consensus         6 ~~irni~iiG~~~~G-KTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~---~~~~~~~~~i~liDtP   81 (687)
T PRK13351          6 MQIRNIGILAHIDAG-KTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA---TSCDWDNHRINLIDTP   81 (687)
T ss_pred             ccccEEEEECCCCCc-chhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce---EEEEECCEEEEEEECC
Confidence            345799999999999 999999997421             0001       111221111   1222235789999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      |+.++...+..+++.+|++++|+|.++..+.+.. ..| ..+..  .++|+++++||+|+..
T Consensus        82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiviNK~D~~~  139 (687)
T PRK13351         82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADR--YGIPRLIFINKMDRVG  139 (687)
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHh--cCCCEEEEEECCCCCC
Confidence            9999988889999999999999999987766654 334 34433  3799999999999875

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.57  E-value=8.9e-15  Score=119.85  Aligned_cols=148  Identities=16%  Similarity=0.084  Sum_probs=93.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC-------C-----Ccccc--Cceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS-------S-----IWDYI--PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~-------~-----~~~~~--~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      ..+|+++|..++| ||||+++|++..       .     .+...  ..-|.+. ...+..+.....+.+|||||+++|..
T Consensus        12 ~~~i~i~Ghvd~G-KStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~   90 (394)
T TIGR00485        12 HVNIGTIGHVDHG-KTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK   90 (394)
T ss_pred             eEEEEEEeecCCC-HHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHH
Confidence            4679999999999 999999997320       0     00000  0011111 12233444456789999999998865


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-vv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      ........+|++++|+|+++....+..  .++..+...  ++|.+ +++||+|+.+..+..       ....++++.+++
T Consensus        91 ~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~-------~~~~~~i~~~l~  159 (394)
T TIGR00485        91 NMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELL-------ELVEMEVRELLS  159 (394)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHH-------HHHHHHHHHHHH
Confidence            444455678999999999874332222  223333332  66755 689999987543210       012346777888


Q ss_pred             HhCC----cEEEEeccCCCC
Q 028595          148 QIGA----SYYIECSSKTQQ  163 (207)
Q Consensus       148 ~~~~----~~~~e~Sa~~~~  163 (207)
                      .++.    .+++++||.++.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       160 EYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             hcCCCccCccEEECcccccc
Confidence            7763    489999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=1.3e-14  Score=116.82  Aligned_cols=167  Identities=16%  Similarity=0.154  Sum_probs=124.0

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCC--CCc-----cccCce------eeee-----eeEEEE-CCeEEEEEEEeCCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRS--SIW-----DYIPTV------FDNF-----SANVVA-EGTTVNLGLWDTAG   62 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~--~~~-----~~~~t~------~~~~-----~~~~~~-~~~~~~l~i~D~~G   62 (207)
                      +...+.+++.--..| ||||..|++...  +..     ....+.      |.+.     ...+.. +|++|.++++||||
T Consensus         7 ~~IRNFsIIAHIDHG-KSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           7 KNIRNFSIIAHIDHG-KSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhccceEEEEEecCC-cchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            445688999999999 999999987432  111     111111      2121     112222 56899999999999


Q ss_pred             CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH
Q 028595           63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  142 (207)
Q Consensus        63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~  142 (207)
                      +-+|..-..+.+..|.+.++|.|+++.-..+.+ .+.+..+..   +.-++-|.||+|++..+            ...-.
T Consensus        86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Ad------------pervk  149 (603)
T COG0481          86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAAD------------PERVK  149 (603)
T ss_pred             ccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCC------------HHHHH
Confidence            999998888899999999999999998888877 555555554   78889999999998764            33344


Q ss_pred             HHHHHHhCC--cEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhh
Q 028595          143 EELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKE  185 (207)
Q Consensus       143 ~~~~~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~  185 (207)
                      +++.+-.|+  ...+.+||++|.||+++++.+++.+..+.-+.+.
T Consensus       150 ~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~  194 (603)
T COG0481         150 QEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDA  194 (603)
T ss_pred             HHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCC
Confidence            555555665  3468899999999999999999999988755444

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=3.6e-14  Score=115.97  Aligned_cols=165  Identities=18%  Similarity=0.120  Sum_probs=119.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CCc-----ccc------Cceeeee----eeEEEECCeEEEEEEEeCCCCccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SIW-----DYI------PTVFDNF----SANVVAEGTTVNLGLWDTAGQEDY   66 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~-----~~~------~t~~~~~----~~~~~~~~~~~~l~i~D~~G~~~~   66 (207)
                      ..++.+|.--..| ||||..+++...  ...     ...      -.-|.+.    ...+..+|+.+.++++||||+-+|
T Consensus        60 iRNfsIIAHVDHG-KSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF  138 (650)
T KOG0462|consen   60 IRNFSIIAHVDHG-KSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF  138 (650)
T ss_pred             ccceEEEEEecCC-cchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence            4578899999999 999999986321  110     000      0001122    112334578899999999999999


Q ss_pred             cccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595           67 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR  146 (207)
Q Consensus        67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~  146 (207)
                      .....+.+..+|++|+|.|+++.-..+.+ ..++..++.   +.-+|.|.||+|++..+..         --..+.+++.
T Consensus       139 s~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adpe---------~V~~q~~~lF  205 (650)
T KOG0462|consen  139 SGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADPE---------RVENQLFELF  205 (650)
T ss_pred             cceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCHH---------HHHHHHHHHh
Confidence            99999999999999999999998888877 555555554   7889999999999876421         0122333333


Q ss_pred             HHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 028595          147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ  183 (207)
Q Consensus       147 ~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~  183 (207)
                      ...+ .+.+.+||++|.|++++++++++.+..+.-..
T Consensus       206 ~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~  241 (650)
T KOG0462|consen  206 DIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIR  241 (650)
T ss_pred             cCCc-cceEEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence            3233 37899999999999999999999998876433

>cd04169 RF3 RF3 subfamily

Probab=99.56  E-value=1.8e-14  Score=111.90  Aligned_cols=115  Identities=16%  Similarity=0.111  Sum_probs=78.9

Q ss_pred             eeEEEEecccccceeeeeeeccCCC--CCc---------------cccCce---eeee-eeEEEECCeEEEEEEEeCCCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS--SIW---------------DYIPTV---FDNF-SANVVAEGTTVNLGLWDTAGQ   63 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~--~~~---------------~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~   63 (207)
                      .+|+++|..++| ||||+++++...  ...               ++.+..   +..+ .....+....+.+++|||||+
T Consensus         3 Rni~ivGh~~~G-KTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~   81 (267)
T cd04169           3 RTFAIISHPDAG-KTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH   81 (267)
T ss_pred             cEEEEEcCCCCC-HHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence            589999999999 999999987421  110               010000   1111 122334455688999999999


Q ss_pred             ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           64 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      .+|......+++.+|++|+|+|.++......  ..++.....  .++|+++++||+|+...
T Consensus        82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a  138 (267)
T cd04169          82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGR  138 (267)
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCC
Confidence            9887767778899999999999987543332  234444433  37899999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.55  E-value=1.2e-13  Score=106.14  Aligned_cols=96  Identities=24%  Similarity=0.288  Sum_probs=79.4

Q ss_pred             ccccccccceecCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH
Q 028595           64 EDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  142 (207)
Q Consensus        64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~  142 (207)
                      +++..+.+.+++++|++++|||++++. ++..+ ..|+..+..  .++|+++|+||+|+.+.+.+          ..+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~----------~~~~~   90 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDEDM----------EKEQL   90 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHHH----------HHHHH
Confidence            678889999999999999999999887 78887 889887764  58999999999999755432          33455


Q ss_pred             HHHHHHhCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595          143 EELRKQIGASYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       143 ~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      +.+. ..++ +++++||++|.|++++|+.+..
T Consensus        91 ~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        91 DIYR-NIGY-QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence            5554 4777 8999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.54  E-value=4.3e-14  Score=109.86  Aligned_cols=164  Identities=18%  Similarity=0.149  Sum_probs=113.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECCeEEEEEEEeCCCCc----cccccccce---ec
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLS---YR   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~---~~   75 (207)
                      ..-|.+||.|++| |||||+.++..+- ...|.-|+-....-.+.++ ..-.+.+-|+||--    .-..+-..|   +.
T Consensus       159 lADVGLVG~PNaG-KSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE  236 (369)
T COG0536         159 LADVGLVGLPNAG-KSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIE  236 (369)
T ss_pred             ecccccccCCCCc-HHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence            3457899999999 9999999987763 4556555543333344442 23457899999832    223333333   45


Q ss_pred             CCcEEEEEEeCCChhh---HHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           76 GADVFVLAFSLVSRAS---YENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s---~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      ++.+++.|.|++..+.   .++. ..+..++..+.   .+.|.+||+||+|+....+.          .....+.+.+..
T Consensus       237 Rt~vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~----------~~~~~~~l~~~~  305 (369)
T COG0536         237 RTRVLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE----------LEELKKALAEAL  305 (369)
T ss_pred             hhheeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH----------HHHHHHHHHHhc
Confidence            6899999999996553   5555 66777777776   47999999999997655432          334455555555


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +...++.+||.+++|++++...+.+.+....
T Consensus       306 ~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         306 GWEVFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             CCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            5533333999999999999999998887664

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=2.5e-13  Score=111.28  Aligned_cols=150  Identities=13%  Similarity=0.176  Sum_probs=101.3

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCceeee-eeeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDN-FSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      |+++|-=..| ||||+..+-..+......--++-. .-.++..+ +..-.+.+.||||++-|..|+..=.+-+|++|+|.
T Consensus         8 VtimGHVDHG-KTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVV   86 (509)
T COG0532           8 VTIMGHVDHG-KTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVV   86 (509)
T ss_pred             EEEeCcccCC-ccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEE
Confidence            4556666666 999999998887654322111111 12233333 12346889999999999999988888899999999


Q ss_pred             eCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC--------cE
Q 028595           85 SLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA--------SY  153 (207)
Q Consensus        85 d~~~~---~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~  153 (207)
                      ++.+.   ++.+.+  .   .++.  .++|++++.||+|.++.+             ......-.+++|+        ..
T Consensus        87 a~dDGv~pQTiEAI--~---hak~--a~vP~iVAiNKiDk~~~n-------------p~~v~~el~~~gl~~E~~gg~v~  146 (509)
T COG0532          87 AADDGVMPQTIEAI--N---HAKA--AGVPIVVAINKIDKPEAN-------------PDKVKQELQEYGLVPEEWGGDVI  146 (509)
T ss_pred             EccCCcchhHHHHH--H---HHHH--CCCCEEEEEecccCCCCC-------------HHHHHHHHHHcCCCHhhcCCceE
Confidence            99984   333332  1   1111  489999999999998543             2222222222332        36


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHh
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      ++++||++|+|+.+++..++-...
T Consensus       147 ~VpvSA~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         147 FVPVSAKTGEGIDELLELILLLAE  170 (509)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHH
Confidence            899999999999999999875553

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.54  E-value=4.9e-14  Score=118.73  Aligned_cols=116  Identities=13%  Similarity=0.059  Sum_probs=79.6

Q ss_pred             cceeEEEEecccccceeeeeeeccC--CCCC---------------ccccCc---eeeee-eeEEEECCeEEEEEEEeCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSG--RSSI---------------WDYIPT---VFDNF-SANVVAEGTTVNLGLWDTA   61 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~--~~~~---------------~~~~~t---~~~~~-~~~~~~~~~~~~l~i~D~~   61 (207)
                      ...+|+++|..++| ||||.++++.  +...               .++.+.   -+..+ .....++...+.+++||||
T Consensus         9 ~~Rni~IiGh~daG-KTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          9 KRRTFAIISHPDAG-KTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             cCCEEEEECCCCCC-HHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            46799999999999 9999999963  2110               000100   01112 1122333445789999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      |+..|......+++.+|++|+|+|.++......  ..++.....  .++|+++++||+|+..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRL--RDTPIFTFINKLDRDG  145 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHh--cCCCEEEEEECCcccc
Confidence            999988777788899999999999987543332  334444433  3899999999999864

>CHL00071 tufA elongation factor Tu

Probab=99.51  E-value=5.5e-14  Score=115.68  Aligned_cols=149  Identities=16%  Similarity=0.085  Sum_probs=94.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC------ccccCc--------eeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI------WDYIPT--------VFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~------~~~~~t--------~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      ..+|+++|..++| ||||+++|++..-.      ..+...        -|.+. ...........++.+.||||+..|..
T Consensus        12 ~~~i~i~Gh~d~G-KSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~   90 (409)
T CHL00071         12 HVNIGTIGHVDHG-KTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK   90 (409)
T ss_pred             eEEEEEECCCCCC-HHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence            4679999999999 99999999854110      000000        11111 11122233345678999999987766


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      .....+..+|++++|+|+.....-+.  ..++..+...  ++| ++++.||+|+.+..+..       ....+++..+.+
T Consensus        91 ~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~-------~~~~~~l~~~l~  159 (409)
T CHL00071         91 NMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDEELL-------ELVELEVRELLS  159 (409)
T ss_pred             HHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHHHHH-------HHHHHHHHHHHH
Confidence            55566778999999999986533332  2333344332  678 77899999997543210       012346667777


Q ss_pred             HhCC----cEEEEeccCCCCC
Q 028595          148 QIGA----SYYIECSSKTQQN  164 (207)
Q Consensus       148 ~~~~----~~~~e~Sa~~~~~  164 (207)
                      ..++    .+++.+||.+|.|
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        160 KYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HhCCCCCcceEEEcchhhccc
Confidence            6653    4899999999864

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.50  E-value=1.5e-14  Score=96.49  Aligned_cols=139  Identities=21%  Similarity=0.125  Sum_probs=106.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc----cceecCCcE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----PLSYRGADV   79 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----~~~~~~~d~   79 (207)
                      +.|++++|..++| ||||.+++-+..  ..|..|+..+|...          -.+||||.-.....+    -....++|+
T Consensus         1 MKri~~vG~~gcG-KTtL~q~L~G~~--~lykKTQAve~~d~----------~~IDTPGEy~~~~~~Y~aL~tt~~dadv   67 (148)
T COG4917           1 MKRIAFVGQVGCG-KTTLFQSLYGND--TLYKKTQAVEFNDK----------GDIDTPGEYFEHPRWYHALITTLQDADV   67 (148)
T ss_pred             CceeEEecccccC-chhHHHHhhcch--hhhcccceeeccCc----------cccCCchhhhhhhHHHHHHHHHhhccce
Confidence            3588999999999 999999998775  34556665544221          147999954333332    334568999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +++|-++++++|....  .+....     ..|+|-+.+|.|+.++.            ..+..++|..+-|..+.|++|+
T Consensus        68 i~~v~~and~~s~f~p--~f~~~~-----~k~vIgvVTK~DLaed~------------dI~~~~~~L~eaGa~~IF~~s~  128 (148)
T COG4917          68 IIYVHAANDPESRFPP--GFLDIG-----VKKVIGVVTKADLAEDA------------DISLVKRWLREAGAEPIFETSA  128 (148)
T ss_pred             eeeeecccCccccCCc--cccccc-----ccceEEEEecccccchH------------hHHHHHHHHHHcCCcceEEEec
Confidence            9999999998877654  333332     46699999999998754            6788999999999889999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 028595          160 KTQQNVKAVFDAAIK  174 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~  174 (207)
                      .++.|+++++..+..
T Consensus       129 ~d~~gv~~l~~~L~~  143 (148)
T COG4917         129 VDNQGVEELVDYLAS  143 (148)
T ss_pred             cCcccHHHHHHHHHh
Confidence            999999999998864

>COG2262 HflX GTPases [General function prediction only]

Probab=99.49  E-value=3.9e-13  Score=107.05  Aligned_cols=157  Identities=17%  Similarity=0.109  Sum_probs=109.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc--ccccc------cee
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLRP------LSY   74 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~~------~~~   74 (207)
                      ...|.++|-.|+| ||||+|++++.... .+...++-+.....+.+.+ ...+.+-||.|.-+-  ..+..      .-.
T Consensus       192 ~p~vaLvGYTNAG-KSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         192 IPLVALVGYTNAG-KSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCeEEEEeecccc-HHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            3568999999999 99999999976543 3333333344455556654 355789999994322  11222      224


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      ..+|+++.|.|++++.....+ ..-...+.+.. .++|+++|.||+|+..+..               .......... .
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---------------~~~~~~~~~~-~  332 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE---------------ILAELERGSP-N  332 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh---------------hhhhhhhcCC-C
Confidence            569999999999999777777 56666666654 5799999999999754431               1122222221 5


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      .+.+||++|.|++.+.+.|...+...
T Consensus       333 ~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         333 PVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             eEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            78999999999999999999988743

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.48  E-value=1.3e-14  Score=105.22  Aligned_cols=118  Identities=11%  Similarity=0.045  Sum_probs=72.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEE-CCeEEEEEEEeCCCCccccccccc---eecCCcE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPL---SYRGADV   79 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~---~~~~~d~   79 (207)
                      ..-|+++|..++| ||+|..+|..+...+.+.+. .....  +.+ +...-.+.+.|+||+++.+.....   +..++.+
T Consensus         3 ~~~vlL~Gps~SG-KTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSG-KTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSS-HHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCC-HHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            4468999999999 99999999988543322211 11111  111 223346789999999998864433   4778999


Q ss_pred             EEEEEeCCC-hhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCc
Q 028595           80 FVLAFSLVS-RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        80 ~i~v~d~~~-~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~  125 (207)
                      +|||.|.+. ...+.++.+.++..+....   ..+|++|++||.|+....
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            999999974 4455555455555554322   579999999999987643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.48  E-value=1.2e-13  Score=107.67  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCcccc------Cce----------eeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYI------PTV----------FDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~------~t~----------~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      +|+++|..++| ||||+++++...-.....      .+.          +... .....+....+.+.+|||||+..+..
T Consensus         1 ni~ivG~~gsG-KStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~   79 (268)
T cd04170           1 NIALVGHSGSG-KTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVG   79 (268)
T ss_pred             CEEEECCCCCC-HHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHH
Confidence            58999999999 999999987432110000      010          0000 11111222346789999999988777


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      .+..++..+|++++|+|.++....... ..| ..+..  .++|.++++||.|....
T Consensus        80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~--~~~p~iivvNK~D~~~~  131 (268)
T cd04170          80 ETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADE--AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEECCccCCC
Confidence            778889999999999999987655443 233 33333  37899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR00503 prfC peptide chain release factor 3

Probab=99.47  E-value=4.6e-13  Score=112.89  Aligned_cols=116  Identities=13%  Similarity=0.057  Sum_probs=79.2

Q ss_pred             cceeEEEEecccccceeeeeeeccC--CCCCc---------------cccC---ceeeee-eeEEEECCeEEEEEEEeCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSG--RSSIW---------------DYIP---TVFDNF-SANVVAEGTTVNLGLWDTA   61 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~--~~~~~---------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~D~~   61 (207)
                      ...+|+++|..++| ||||+++++.  +....               ++.+   .-+.++ .....++...+.+++||||
T Consensus        10 ~~RniaiiGh~~aG-KTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503        10 KRRTFAIISHPDAG-KTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             cCCEEEEEcCCCCC-HHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            46799999999999 9999999852  21110               0000   012222 2223445556889999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      |+..|......++..+|++|+|+|.++..... . ..++.....  .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-T-RKLMEVTRL--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-H-HHHHHHHHh--cCCCEEEEEECccccC
Confidence            99988776777889999999999998742222 1 344444433  3789999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.46  E-value=3.5e-13  Score=110.42  Aligned_cols=162  Identities=15%  Similarity=0.123  Sum_probs=100.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC------ccc-----cC---ceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI------WDY-----IP---TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~------~~~-----~~---t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      ..+|+++|..++| ||||+++|++....      ..+     .+   .-|.+. ............+.+.||||+.+|..
T Consensus        12 ~~ni~iiGhvd~G-KSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~   90 (396)
T PRK00049         12 HVNVGTIGHVDHG-KTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVK   90 (396)
T ss_pred             EEEEEEEeECCCC-HHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHH
Confidence            4679999999999 99999999863100      000     00   011111 11222333345678999999988766


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-vv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      .....+..+|++++|+|..+....+.  ..++..+...  ++|.+ ++.||+|+.+..+.       ......+...+..
T Consensus        91 ~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~-------~~~~~~~i~~~l~  159 (396)
T PRK00049         91 NMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEEL-------LELVEMEVRELLS  159 (396)
T ss_pred             HHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHHH-------HHHHHHHHHHHHH
Confidence            55566788999999999987533332  2344444432  68875 68999999753221       0002234555655


Q ss_pred             HhCC----cEEEEeccCCCC----------CHHHHHHHHHHHHh
Q 028595          148 QIGA----SYYIECSSKTQQ----------NVKAVFDAAIKVVI  177 (207)
Q Consensus       148 ~~~~----~~~~e~Sa~~~~----------~i~~~f~~i~~~~~  177 (207)
                      ..++    .+++.+||.++.          ++..+++.|...+.
T Consensus       160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            5543    478999999875          45667766666543

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.45  E-value=1.4e-13  Score=107.09  Aligned_cols=114  Identities=15%  Similarity=0.055  Sum_probs=75.7

Q ss_pred             eEEEEecccccceeeeeeeccCC--CCCc-----------cccCc---eeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR--SSIW-----------DYIPT---VFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~--~~~~-----------~~~~t---~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      +|+++|..++| ||||+++++..  ....           ++.+.   -+.+. .....+.-...++.+|||||+..+..
T Consensus         1 nv~ivGh~~~G-KTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~   79 (270)
T cd01886           1 NIGIIAHIDAG-KTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTI   79 (270)
T ss_pred             CEEEEcCCCCC-HHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHH
Confidence            58999999999 99999999631  1100           00110   01111 11111112346789999999988888


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      .+..+++.+|++++|.|..+......  ..++..+..  .++|++++.||+|+.+.
T Consensus        80 ~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~a  131 (270)
T cd01886          80 EVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADR--YNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            88889999999999999987543333  233344433  27899999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PLN03126 Elongation factor Tu; Provisional

Probab=99.44  E-value=3.5e-13  Score=112.29  Aligned_cols=149  Identities=16%  Similarity=0.065  Sum_probs=94.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC------CCccc--------cCceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS------SIWDY--------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~------~~~~~--------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      ..+|+++|..++| ||||+++|+...      ....+        ....+.+. ............+.++|+||+++|..
T Consensus        81 ~~ni~iiGhvd~G-KSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~  159 (478)
T PLN03126         81 HVNIGTIGHVDHG-KTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK  159 (478)
T ss_pred             eeEEEEECCCCCC-HHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHH
Confidence            4579999999999 999999998521      11110        00011111 11112222345778999999998866


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      .....+..+|++++|+|..+....+.  ..++..+...  ++| ++++.||+|+.+..+.       .....+++..+..
T Consensus       160 ~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~-------~~~i~~~i~~~l~  228 (478)
T PLN03126        160 NMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEEL-------LELVELEVRELLS  228 (478)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHHH-------HHHHHHHHHHHHH
Confidence            55566678999999999987544433  2334444333  677 7889999999753321       0012245666666


Q ss_pred             HhCC----cEEEEeccCCCCC
Q 028595          148 QIGA----SYYIECSSKTQQN  164 (207)
Q Consensus       148 ~~~~----~~~~e~Sa~~~~~  164 (207)
                      ..++    .+++.+||.++.+
T Consensus       229 ~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        229 SYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             hcCCCcCcceEEEEEcccccc
Confidence            6542    3789999998754

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.44  E-value=4.4e-13  Score=110.20  Aligned_cols=153  Identities=16%  Similarity=0.013  Sum_probs=92.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCC--CCcc-----------ccCc--------e----------eeee-eeEEEECCeE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS--SIWD-----------YIPT--------V----------FDNF-SANVVAEGTT   52 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~--~~~~-----------~~~t--------~----------~~~~-~~~~~~~~~~   52 (207)
                      .+|+++|..++| ||||+.+|+...  ....           .-.+        .          |.+. ..........
T Consensus         1 ~~~~~vGhvd~G-KSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDG-KSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK   79 (406)
T ss_pred             CeEEEECCCCCC-chhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC
Confidence            479999999999 999999996332  1110           0000        0          0001 0111122234


Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  132 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~  132 (207)
                      ..+.+|||||+++|.......+..+|++++|+|+......+..  ..+..+... ...+++++.||+|+.+....     
T Consensus        80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~-~~~~iivviNK~D~~~~~~~-----  151 (406)
T TIGR02034        80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLL-GIRHVVLAVNKMDLVDYDEE-----  151 (406)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHc-CCCcEEEEEEecccccchHH-----
Confidence            5788999999998865555567889999999999865433322  112222222 13468999999998643210     


Q ss_pred             CCcccCHHHHHHHHHHhCC--cEEEEeccCCCCCHHH
Q 028595          133 GLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA  167 (207)
Q Consensus       133 ~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~  167 (207)
                       ......++...+.+.++.  .+++++||.+|+|+.+
T Consensus       152 -~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       152 -VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             -HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             000012344445555554  3699999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.44  E-value=1.1e-12  Score=107.08  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=56.9

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCc-cc-----cCceeeeeee-EE---------------EECC-eEEEEEEEeCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIW-DY-----IPTVFDNFSA-NV---------------VAEG-TTVNLGLWDTA   61 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~-~~-----~~t~~~~~~~-~~---------------~~~~-~~~~l~i~D~~   61 (207)
                      .||+++|.+++| ||||+|+|++..... .|     .|+.|..+.. .+               ..++ ....+++||+|
T Consensus         2 ~kigivG~pnvG-KSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a   80 (396)
T PRK09602          2 ITIGLVGKPNVG-KSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA   80 (396)
T ss_pred             cEEEEECCCCCC-HHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence            589999999999 999999999887542 33     2333322210 00               0122 24779999999


Q ss_pred             CC----ccccccccce---ecCCcEEEEEEeCC
Q 028595           62 GQ----EDYNRLRPLS---YRGADVFVLAFSLV   87 (207)
Q Consensus        62 G~----~~~~~~~~~~---~~~~d~~i~v~d~~   87 (207)
                      |.    +....+...+   ++++|++++|+|..
T Consensus        81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            93    4445555566   78999999999997

>PLN03127 Elongation factor Tu; Provisional

Probab=99.44  E-value=9.1e-13  Score=109.19  Aligned_cols=163  Identities=17%  Similarity=0.118  Sum_probs=97.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCC------CCCcc----------ccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR------SSIWD----------YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN   67 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~------~~~~~----------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   67 (207)
                      ..+|+++|..++| ||||+++|.+.      .....          ..+.++.+ ...........++.+.||||+++|-
T Consensus        61 ~~ni~iiGhvd~G-KSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~~~~i~~iDtPGh~~f~  138 (447)
T PLN03127         61 HVNVGTIGHVDHG-KTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA-TAHVEYETAKRHYAHVDCPGHADYV  138 (447)
T ss_pred             eEEEEEECcCCCC-HHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee-eeEEEEcCCCeEEEEEECCCccchH
Confidence            4579999999999 99999999622      10000          00111111 1122333344678899999998775


Q ss_pred             ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595           68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR  146 (207)
Q Consensus        68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~  146 (207)
                      ......+..+|++++|.|.++...-+.  ...+..+...  ++| ++++.||+|+.+..+..       ....++.+++.
T Consensus       139 ~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~-------~~i~~~i~~~l  207 (447)
T PLN03127        139 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEELL-------ELVEMELRELL  207 (447)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHHHH-------HHHHHHHHHHH
Confidence            444444567999999999986533332  2333344332  688 57899999997533210       00112444555


Q ss_pred             HHhCC----cEEEEeccC---CCCC-------HHHHHHHHHHHHhCC
Q 028595          147 KQIGA----SYYIECSSK---TQQN-------VKAVFDAAIKVVIKP  179 (207)
Q Consensus       147 ~~~~~----~~~~e~Sa~---~~~~-------i~~~f~~i~~~~~~~  179 (207)
                      ..+++    .+++.+||.   ++.|       +.++++.+...+..+
T Consensus       208 ~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p  254 (447)
T PLN03127        208 SFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP  254 (447)
T ss_pred             HHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence            54433    378888776   4555       677777777665433

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.44  E-value=8e-13  Score=108.15  Aligned_cols=160  Identities=23%  Similarity=0.296  Sum_probs=127.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..|+.|+|..++| ||+|+++++.+.|.++..|. +..|.+.+.+++....+.+.|.+|...     .+|...+|++|||
T Consensus        30 elk~givg~~~sg-ktalvhr~ltgty~~~e~~e-~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv  102 (749)
T KOG0705|consen   30 ELKLGIVGTSQSG-KTALVHRYLTGTYTQDESPE-GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV  102 (749)
T ss_pred             hhheeeeecccCC-ceeeeeeeccceeccccCCc-CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence            4689999999999 99999999999987765544 667899999999999999999988433     5677889999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |.+.+.++++.+ ..+.-.+..+.  ..+|+++++++.-.....        ++.+....+..++..+....||++++.+
T Consensus       103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~aty  173 (749)
T KOG0705|consen  103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATY  173 (749)
T ss_pred             EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhh
Confidence            999999999998 55554554333  578999999876554332        2234666777777766555899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028595          162 QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~  179 (207)
                      |.+++..|+.+..+++..
T Consensus       174 Glnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  174 GLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            999999999999887654

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.43  E-value=8e-13  Score=102.44  Aligned_cols=156  Identities=17%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEE---CCeEEEEEEEeCCCCc-cc-ccccc------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVA---EGTTVNLGLWDTAGQE-DY-NRLRP------   71 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~---~~~~~~l~i~D~~G~~-~~-~~~~~------   71 (207)
                      ..-|++.|.+||| ||||++.+++.+.. ..|.-|+     +.+.+   +.....++++||||-- +- ..+.+      
T Consensus       168 ~pTivVaG~PNVG-KSSlv~~lT~AkpEvA~YPFTT-----K~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi  241 (346)
T COG1084         168 LPTIVVAGYPNVG-KSSLVRKLTTAKPEVAPYPFTT-----KGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAI  241 (346)
T ss_pred             CCeEEEecCCCCc-HHHHHHHHhcCCCccCCCCccc-----cceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHH
Confidence            3568999999999 99999999988742 3443332     22222   2234678999999921 11 11111      


Q ss_pred             ceec-CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           72 LSYR-GADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        72 ~~~~-~~d~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                      ..++ -+++++|++|.+..  -+.+.- ..++..+..... .|+++|.||+|..+..            ..+++......
T Consensus       242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~  307 (346)
T COG1084         242 LALRHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLE  307 (346)
T ss_pred             HHHHHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHh
Confidence            1112 26899999998864  333443 344555555444 8999999999987554            34555555666


Q ss_pred             hCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       149 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      -+......+++..+.+++.+-..+.....++
T Consensus       308 ~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         308 EGGEEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             hccccccceeeeehhhHHHHHHHHHHHhhch
Confidence            6664577899999999998888877765443

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.43  E-value=1.5e-12  Score=107.25  Aligned_cols=161  Identities=21%  Similarity=0.188  Sum_probs=124.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +.-.++|..++| ||.+++++.++.+...+..+....+.. .+.+.|+...+.+.|.+-. ....+...- ..+|+++++
T Consensus       426 f~C~V~G~k~~G-Ks~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~  502 (625)
T KOG1707|consen  426 FQCFVVGPKNCG-KSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLV  502 (625)
T ss_pred             eeEEEEcCCcCc-hHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEe
Confidence            345688999999 999999999999888777787777754 5666788888999998765 333222222 679999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  163 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  163 (207)
                      ||.+++.++..+ ...++..... ...|+++|++|+|+.+..+.          ...+..++++++++.+.+.+|..+.-
T Consensus       503 YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~----------~~iqpde~~~~~~i~~P~~~S~~~~~  570 (625)
T KOG1707|consen  503 YDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQR----------YSIQPDEFCRQLGLPPPIHISSKTLS  570 (625)
T ss_pred             cccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhhc----------cCCChHHHHHhcCCCCCeeeccCCCC
Confidence            999999999988 3333333222 58999999999999887654          33334899999999888888888644


Q ss_pred             CHHHHHHHHHHHHhCCCc
Q 028595          164 NVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       164 ~i~~~f~~i~~~~~~~~~  181 (207)
                      + .++|..|+..+..+..
T Consensus       571 s-~~lf~kL~~~A~~Ph~  587 (625)
T KOG1707|consen  571 S-NELFIKLATMAQYPHI  587 (625)
T ss_pred             C-chHHHHHHHhhhCCCc
Confidence            4 9999999999988763

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.43  E-value=5.4e-14  Score=96.68  Aligned_cols=113  Identities=20%  Similarity=0.197  Sum_probs=81.4

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCcccc-CceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +|++++|+.++| ||+|+.++..+.+...+. +|++                          +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvG-Kt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVG-KVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChh-HHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEE
Confidence            489999999999 999999998777654443 4443                          333345567788999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |+.++.+++..+   |...+...+ .+.|.++++||.|+.+....          ..+++.         .|+++|++++
T Consensus        54 ~~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~----------~~~~~~---------~~~~~s~~~~  111 (124)
T smart00010       54 WRVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQV----------ATEEGL---------EFAETSAKTP  111 (124)
T ss_pred             EEccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCcC----------CHHHHH---------HHHHHhCCCc
Confidence            999999998764   655555443 47899999999998443221          333232         4567888888


Q ss_pred             CCHH
Q 028595          163 QNVK  166 (207)
Q Consensus       163 ~~i~  166 (207)
                      .|+.
T Consensus       112 ~~~~  115 (124)
T smart00010      112 EEGE  115 (124)
T ss_pred             chhh
Confidence            8874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.43  E-value=4.1e-12  Score=98.34  Aligned_cols=152  Identities=18%  Similarity=0.150  Sum_probs=102.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCC----cccc---ccccceecC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----EDYN---RLRPLSYRG   76 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----~~~~---~~~~~~~~~   76 (207)
                      ..++++|.|++| ||||++.+++.... .+|.-|+-....-.+..+|  .++++.|+||-    ..-+   ...-...++
T Consensus        64 a~v~lVGfPsvG-KStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          64 ATVALVGFPSVG-KSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             eEEEEEcCCCcc-HHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            468999999999 99999999988753 4555554443344555555  77899999972    2212   223456789


Q ss_pred             CcEEEEEEeCCChhhH-HHHHHHHH-------------------------------------------HHHhhcC-----
Q 028595           77 ADVFVLAFSLVSRASY-ENVLKKWI-------------------------------------------PELQHYS-----  107 (207)
Q Consensus        77 ~d~~i~v~d~~~~~s~-~~~~~~~~-------------------------------------------~~i~~~~-----  107 (207)
                      ||++++|.|+....+. +-+...+.                                           .+..-++     
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            9999999999976552 22211111                                           1110000     


Q ss_pred             -----------------CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHH
Q 028595          108 -----------------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD  170 (207)
Q Consensus       108 -----------------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  170 (207)
                                       .-+|.+.|.||+|+..               .++...+.+..   ..+.+||.++.|++++.+
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nld~L~e  282 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINLDELKE  282 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCHHHHHH
Confidence                             0158889999999853               34455555555   569999999999999999


Q ss_pred             HHHHHHh
Q 028595          171 AAIKVVI  177 (207)
Q Consensus       171 ~i~~~~~  177 (207)
                      .+.+.+-
T Consensus       283 ~i~~~L~  289 (365)
T COG1163         283 RIWDVLG  289 (365)
T ss_pred             HHHHhhC
Confidence            9998884

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.43  E-value=5.6e-13  Score=111.34  Aligned_cols=155  Identities=13%  Similarity=-0.006  Sum_probs=91.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CCccc----------cCce-------------------eeeee-eEEEECCe
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWDY----------IPTV-------------------FDNFS-ANVVAEGT   51 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~~----------~~t~-------------------~~~~~-~~~~~~~~   51 (207)
                      ..+|+++|..++| ||||+.+|+...  +....          ..+.                   |.+.. ........
T Consensus        27 ~~~i~iiGhvdaG-KSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~  105 (474)
T PRK05124         27 LLRFLTCGSVDDG-KSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE  105 (474)
T ss_pred             ceEEEEECCCCCC-hHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence            4799999999999 999999997442  11100          0000                   00110 01112233


Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  131 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~  131 (207)
                      ..++.+|||||++.|.......+..+|++++|+|++....-+..  .....+... ...|++++.||+|+.+.+..    
T Consensus       106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~--~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~----  178 (474)
T PRK05124        106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR--RHSFIATLL-GIKHLVVAVNKMDLVDYSEE----  178 (474)
T ss_pred             CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch--HHHHHHHHh-CCCceEEEEEeeccccchhH----
Confidence            46788999999988755444446889999999999764322211  111111111 12578999999998643221    


Q ss_pred             CCCcccCHHHHHHHHHHhC---CcEEEEeccCCCCCHHHH
Q 028595          132 PGLVPVTTAQGEELRKQIG---ASYYIECSSKTQQNVKAV  168 (207)
Q Consensus       132 ~~~~~v~~~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~  168 (207)
                        ......++...+....+   ..+++.+||++|.|+.++
T Consensus       179 --~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 --VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             --HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence              00001223334444443   247999999999999764

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.42  E-value=9.2e-13  Score=89.81  Aligned_cols=105  Identities=18%  Similarity=0.152  Sum_probs=68.7

Q ss_pred             eEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc---------ccccee
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---------LRPLSY   74 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~~~   74 (207)
                      +|+++|.+++| ||||+|+|++.+..  ....++........+..++..+  .++||||-.....         .....+
T Consensus         1 ~V~iiG~~~~G-KSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVG-KSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCC-HHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence            68999999999 99999999986532  2222222222223455566554  6999999543211         122233


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeC
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK  118 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK  118 (207)
                      ..+|++++|+|.+++.. +.. ..++..++   .+.|+++|.||
T Consensus        78 ~~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence            78999999999888432 222 34555553   48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.42  E-value=1.2e-12  Score=114.26  Aligned_cols=116  Identities=12%  Similarity=-0.012  Sum_probs=80.1

Q ss_pred             ccceeEEEEecccccceeeeeeeccCC--CCC--ccccC--c----------eeeee---eeEEEECCeEEEEEEEeCCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGR--SSI--WDYIP--T----------VFDNF---SANVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~--~~~--~~~~~--t----------~~~~~---~~~~~~~~~~~~l~i~D~~G   62 (207)
                      +...+|+++|..++| ||||+++|+..  ...  ....+  +          -|.+.   ...+..+  .+.+.+|||||
T Consensus         8 ~~irni~iiG~~~~G-KsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG   84 (689)
T TIGR00484         8 NRFRNIGISAHIDAG-KTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPG   84 (689)
T ss_pred             ccccEEEEECCCCCC-HHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCC
Confidence            345699999999999 99999999632  110  00000  0          01111   1122223  47889999999


Q ss_pred             CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      +.++...+..+++.+|++++|+|.++....+..  .++..+..  .++|+++++||+|+...
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANR--YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            998887788889999999999999986555543  33334433  37899999999998754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.41  E-value=3.9e-13  Score=99.18  Aligned_cols=171  Identities=15%  Similarity=0.153  Sum_probs=108.9

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCCCCcc---ccCceeeeeeeEEEECCeEEEEEEEeCCCCccc-----cccccc
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWD---YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPL   72 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~   72 (207)
                      |....||+++|..++| ||++-..+..+....+   .-+|+....+.....+  +..+++||++||+.+     .+....
T Consensus         1 ~~~~kKvlLMGrsGsG-KsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG--nl~LnlwDcGgqe~fmen~~~~q~d~   77 (295)
T KOG3886|consen    1 VVMKKKVLLMGRSGSG-KSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG--NLVLNLWDCGGQEEFMENYLSSQEDN   77 (295)
T ss_pred             CcccceEEEeccCCCC-ccccchhhhhhhhhhhhhccCCcceeeehhhhhhh--hheeehhccCCcHHHHHHHHhhcchh
Confidence            3456799999999999 9998877764442222   1233333333322222  478999999999833     234567


Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHH---HHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIP---ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      .++++++.|+|||++..+-..++ ..+..   .+-+++|+..+.+..+|.|+......    ....+...+..+.+.+..
T Consensus        78 iF~nV~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r----~~if~~r~~~l~~~s~~~  152 (295)
T KOG3886|consen   78 IFRNVQVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAR----ELIFQRRKEDLRRLSRPL  152 (295)
T ss_pred             hheeheeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccchH----HHHHHHHHHHHHHhcccc
Confidence            88999999999999998877777 55544   45566688889999999999754321    001111122233333333


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ++ .++.+|.-+ +++-+++..+...+.+..+
T Consensus       153 ~~-~~f~TsiwD-etl~KAWS~iv~~lipn~~  182 (295)
T KOG3886|consen  153 EC-KCFPTSIWD-ETLYKAWSSIVYNLIPNVS  182 (295)
T ss_pred             cc-cccccchhh-HHHHHHHHHHHHhhCCChH
Confidence            44 667777654 5666666666666665543

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.40  E-value=1.3e-12  Score=108.43  Aligned_cols=155  Identities=13%  Similarity=0.015  Sum_probs=97.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CCc------------------------cccCc---eeeeeee-EEEECCeEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SIW------------------------DYIPT---VFDNFSA-NVVAEGTTV   53 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~------------------------~~~~t---~~~~~~~-~~~~~~~~~   53 (207)
                      ..+|+++|...+| ||||+-+|+...  ...                        +..+.   -|.+... .........
T Consensus         7 ~~ni~i~Ghvd~G-KSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          7 HINIVVIGHVDSG-KSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             eEEEEEEecCCCC-HHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            3579999999999 999998886311  100                        00000   0111111 112234457


Q ss_pred             EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCC-cEEEEeeCCCcccCc
Q 028595           54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGV-PVVLVGTKLDLREDK  125 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~i~~~~~~~-piivv~nK~D~~~~~  125 (207)
                      .+.+.|+||+++|.......+..+|++|+|+|+++. +++       .. ...+..+..  .++ ++++++||+|+.+..
T Consensus        86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT-~eh~~~~~~--~gi~~iIV~vNKmD~~~~~  161 (447)
T PLN00043         86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQT-REHALLAFT--LGVKQMICCCNKMDATTPK  161 (447)
T ss_pred             EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchH-HHHHHHHHH--cCCCcEEEEEEcccCCchh
Confidence            889999999999988888888999999999999872 221       22 222222222  256 478899999986211


Q ss_pred             ccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHH
Q 028595          126 HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  167 (207)
Q Consensus       126 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~  167 (207)
                      ..    ........++++.+++..|+    .+|+++||.+|+|+.+
T Consensus       162 ~~----~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        162 YS----KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hh----HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            00    00000135678888887773    3799999999999854

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=1.1e-11  Score=90.45  Aligned_cols=112  Identities=16%  Similarity=0.048  Sum_probs=77.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee--eeEEEECCeEEEEEEEeCCCCccccccccceec---CCcE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF--SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR---GADV   79 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~---~~d~   79 (207)
                      .-|.++|..++| ||+|..+|..+..    .+|....-  ...+..+..  .+.+.|.||+++.+.....+++   .+-+
T Consensus        39 ~~Vll~Gl~dSG-KT~LF~qL~~gs~----~~TvtSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~aka  111 (238)
T KOG0090|consen   39 NAVLLVGLSDSG-KTSLFTQLITGSH----RGTVTSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKA  111 (238)
T ss_pred             CcEEEEecCCCC-ceeeeeehhcCCc----cCeeeeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHcccccccee
Confidence            358899999999 9999999998843    33432211  223333332  2789999999998877766776   6889


Q ss_pred             EEEEEeCCC-hhhHHHHHHHHHHHHhhc---CCCCcEEEEeeCCCccc
Q 028595           80 FVLAFSLVS-RASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        80 ~i~v~d~~~-~~s~~~~~~~~~~~i~~~---~~~~piivv~nK~D~~~  123 (207)
                      ++||.|..- .....++...++..+...   ...+|++++.||.|+..
T Consensus       112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen  112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence            999998652 334444434455555443   25799999999999854

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.39  E-value=6.2e-12  Score=112.24  Aligned_cols=149  Identities=18%  Similarity=0.174  Sum_probs=91.0

Q ss_pred             ceeeeeeeccCCCCCccccCc----eeeeeeeEEEECC-e----------E-----EEEEEEeCCCCccccccccceecC
Q 028595           17 SFLLYVLSVSGRSSIWDYIPT----VFDNFSANVVAEG-T----------T-----VNLGLWDTAGQEDYNRLRPLSYRG   76 (207)
Q Consensus        17 gKssli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~-~----------~-----~~l~i~D~~G~~~~~~~~~~~~~~   76 (207)
                      +||||+..+.+.+......-.    +|..   .+..+. .          .     -.+.+|||||++.|..+....+..
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~---~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~  549 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGAT---EIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSL  549 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceE---EEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhccc
Confidence            399999999988765432211    1221   111111 0          0     127899999999998888888888


Q ss_pred             CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCccc------CHHHHH----
Q 028595           77 ADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV------TTAQGE----  143 (207)
Q Consensus        77 ~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v------~~~~~~----  143 (207)
                      +|++++|+|+++   +++++.+ .    .+..  .++|+++|+||+|+.+........+-...+      ...+..    
T Consensus       550 aDivlLVVDa~~Gi~~qT~e~I-~----~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~  622 (1049)
T PRK14845        550 ADLAVLVVDINEGFKPQTIEAI-N----ILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY  622 (1049)
T ss_pred             CCEEEEEEECcccCCHhHHHHH-H----HHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence            999999999987   4555544 2    2322  268999999999986432110000000000      001110    


Q ss_pred             HH---HHHh--------------CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          144 EL---RKQI--------------GASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       144 ~~---~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      .+   ..++              +..+++++||++|+|++++...+...
T Consensus       623 ~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        623 ELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             HHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence            00   1111              23478999999999999999877644

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.39  E-value=6.4e-13  Score=114.96  Aligned_cols=154  Identities=16%  Similarity=0.051  Sum_probs=91.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CCcc----------ccCceeeeeee--------------------EEEECCe
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWD----------YIPTVFDNFSA--------------------NVVAEGT   51 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~----------~~~t~~~~~~~--------------------~~~~~~~   51 (207)
                      ..+|+++|..++| ||||+++|+...  +...          ...+..+.+..                    .......
T Consensus        24 ~~~i~iiGh~~~G-KSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~  102 (632)
T PRK05506         24 LLRFITCGSVDDG-KSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP  102 (632)
T ss_pred             eeEEEEECCCCCC-hHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence            4689999999999 999999998542  1110          00010000110                    0111222


Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  131 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~  131 (207)
                      ...+.++||||++.|.......+..+|++++|+|++....-+..  .....+... ...|++++.||+|+.+....    
T Consensus       103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~~----  175 (632)
T PRK05506        103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQE----  175 (632)
T ss_pred             CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchhH----
Confidence            34678999999988755444457889999999999764332221  112222221 23678999999998642210    


Q ss_pred             CCCcccCHHHHHHHHHHhCC--cEEEEeccCCCCCHHH
Q 028595          132 PGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA  167 (207)
Q Consensus       132 ~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~  167 (207)
                        .......+...+...++.  .+++.+||++|.|+.+
T Consensus       176 --~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 --VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             --HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence              000012334445556664  3589999999999874

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=9.8e-12  Score=102.01  Aligned_cols=148  Identities=16%  Similarity=0.204  Sum_probs=102.5

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCcee---eeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF---DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      |-++|--..| ||||+..|-+..........++   .-|...+. +|  -.+.+.||||+.-|..|+..=..-+|++++|
T Consensus       156 VTiMGHVDHG-KTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV  231 (683)
T KOG1145|consen  156 VTIMGHVDHG-KTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDIVVLV  231 (683)
T ss_pred             EEEeecccCC-hhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence            5577778888 9999999987765443211111   11222232 44  5678999999999999999888899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-H------HHHhCC-cEE
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-L------RKQIGA-SYY  154 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-~------~~~~~~-~~~  154 (207)
                      ....|.---+.+     +.|.+.. .++|++++.||+|.++.+             .+...+ +      .+.+|. .+.
T Consensus       232 VAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKiDkp~a~-------------pekv~~eL~~~gi~~E~~GGdVQv  293 (683)
T KOG1145|consen  232 VAADDGVMPQTL-----EAIKHAKSANVPIVVAINKIDKPGAN-------------PEKVKRELLSQGIVVEDLGGDVQV  293 (683)
T ss_pred             EEccCCccHhHH-----HHHHHHHhcCCCEEEEEeccCCCCCC-------------HHHHHHHHHHcCccHHHcCCceeE
Confidence            999884333322     2332222 599999999999987553             222222 2      233443 478


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 028595          155 IECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +++||++|.|++.+-+.++-..
T Consensus       294 ipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  294 IPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             EEeecccCCChHHHHHHHHHHH
Confidence            9999999999999999877555

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.34  E-value=3.2e-12  Score=106.10  Aligned_cols=153  Identities=13%  Similarity=0.009  Sum_probs=94.6

Q ss_pred             ceeEEEEecccccceeeeeeeccC--CCCCc------------------------cccCc---eeeee-eeEEEECCeEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG--RSSIW------------------------DYIPT---VFDNF-SANVVAEGTTV   53 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~--~~~~~------------------------~~~~t---~~~~~-~~~~~~~~~~~   53 (207)
                      ..+|+++|...+| ||||+.+|+.  +....                        +..+.   -|.+. ...........
T Consensus         7 ~~nv~i~Ghvd~G-KSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~   85 (446)
T PTZ00141          7 HINLVVIGHVDSG-KSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (446)
T ss_pred             eEEEEEEecCCCC-HHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence            4579999999999 9999999864  11110                        00000   01111 11122334457


Q ss_pred             EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh---H---HHHHHHHHHHHhhcCCCCc-EEEEeeCCCccc--C
Q 028595           54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y---ENVLKKWIPELQHYSPGVP-VVLVGTKLDLRE--D  124 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~--~  124 (207)
                      .+.|+||||+++|.......+..+|++++|.|.++..-   +   ... ...+..+...  ++| ++++.||.|...  .
T Consensus        86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT-~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~  162 (446)
T PTZ00141         86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT-REHALLAFTL--GVKQMIVCINKMDDKTVNY  162 (446)
T ss_pred             EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH-HHHHHHHHHc--CCCeEEEEEEccccccchh
Confidence            88999999999987766666788999999999986420   0   111 1222233222  665 679999999532  1


Q ss_pred             c-ccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHH
Q 028595          125 K-HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  167 (207)
Q Consensus       125 ~-~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~  167 (207)
                      . ..       .....++++.+....++    .+++.+|+.+|+|+.+
T Consensus       163 ~~~~-------~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        163 SQER-------YDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hHHH-------HHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            1 10       00133556666666554    4799999999999864

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.34  E-value=3.3e-12  Score=105.86  Aligned_cols=164  Identities=10%  Similarity=0.070  Sum_probs=100.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC---CccccC--ceeeeeeeE-------------E-EEC-C-----------e-
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS---IWDYIP--TVFDNFSAN-------------V-VAE-G-----------T-   51 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~---~~~~~~--t~~~~~~~~-------------~-~~~-~-----------~-   51 (207)
                      ...|.++|.-.+| ||||+..|++-..   .++...  |+..-|...             + ..+ +           . 
T Consensus        34 ~~~ig~~GHVDhG-KTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (460)
T PTZ00327         34 TINIGTIGHVAHG-KSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK  112 (460)
T ss_pred             cEEEEEEccCCCC-HHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence            4679999999999 9999999986432   111100  100000000             0 000 0           0 


Q ss_pred             ---EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595           52 ---TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  127 (207)
Q Consensus        52 ---~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~  127 (207)
                         ...+.++|+||++.|-.....-+..+|++++|.|+.+. ...+..  ..+..+... .-.|++++.||+|+.+....
T Consensus       113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~--ehl~i~~~l-gi~~iIVvlNKiDlv~~~~~  189 (460)
T PTZ00327        113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS--EHLAAVEIM-KLKHIIILQNKIDLVKEAQA  189 (460)
T ss_pred             ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH--HHHHHHHHc-CCCcEEEEEecccccCHHHH
Confidence               23678999999998866555556789999999999874 222221  222222221 13468999999999753221


Q ss_pred             ccCCCCCcccCHHHHHHHHHHh--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          128 LADHPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       128 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                              ....++.+.+....  ...+++.+||++|.|++.+++.|.+.+..+
T Consensus       190 --------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        190 --------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             --------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence                    00223344444332  223899999999999999999998866544

>PRK12739 elongation factor G; Reviewed

Probab=99.34  E-value=9.8e-12  Score=108.57  Aligned_cols=115  Identities=17%  Similarity=0.085  Sum_probs=78.8

Q ss_pred             ccceeEEEEecccccceeeeeeeccCC--CCC-----c------cc-----cCceeeee-eeEEEECCeEEEEEEEeCCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGR--SSI-----W------DY-----IPTVFDNF-SANVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~--~~~-----~------~~-----~~t~~~~~-~~~~~~~~~~~~l~i~D~~G   62 (207)
                      +...+|+++|..++| ||||+++|+..  ...     .      ++     ...+.... ...+..+  ..++.++||||
T Consensus         6 ~~irni~iiGh~~~G-KsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG   82 (691)
T PRK12739          6 EKTRNIGIMAHIDAG-KTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPG   82 (691)
T ss_pred             cCeeEEEEECCCCCC-HHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCC
Confidence            456799999999999 99999999632  100     0      00     00011111 1122333  46789999999


Q ss_pred             CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      +..+...+...+..+|++++|+|.++....+..  ..+..+..  .++|++++.||+|+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~--~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADK--YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCCCC
Confidence            988877788889999999999999886554443  33334433  3789999999999874

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=3.1e-12  Score=103.73  Aligned_cols=161  Identities=19%  Similarity=0.097  Sum_probs=104.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc-cccc--------ccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRL--------RPL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~--------~~~   72 (207)
                      ...|+++|.|||| ||||+|.|.+....  .....|+.+-....+.++|  +.+.|.||+|-.. -...        ...
T Consensus       268 gl~iaIvGrPNvG-KSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  268 GLQIAIVGRPNVG-KSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             CCeEEEEcCCCCC-HHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            4689999999999 99999999987643  3333444455566777777  6678999999544 1111        123


Q ss_pred             eecCCcEEEEEEeCC--ChhhHHHHHHHHHHHHhhcC-------CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH
Q 028595           73 SYRGADVFVLAFSLV--SRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE  143 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~i~~~~-------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~  143 (207)
                      .+..+|++++|+|..  +-++-..+ ...++......       .+.|++++.||+|+...-..          ......
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~----------~~~~~~  413 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE----------MTKIPV  413 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCcccc----------ccCCce
Confidence            466799999999994  33333333 23333333211       24899999999999765211          001011


Q ss_pred             HHHHHh---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          144 ELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       144 ~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      .+....   ....+.++|++++++++++.+.+.+.+..
T Consensus       414 ~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  414 VYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             eccccccCcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence            111111   12246679999999999999999887764

>PRK09866 hypothetical protein; Provisional

Probab=99.33  E-value=1.3e-11  Score=104.09  Aligned_cols=111  Identities=14%  Similarity=0.084  Sum_probs=75.4

Q ss_pred             EEEEEEeCCCCccc--c---ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595           53 VNLGLWDTAGQEDY--N---RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  127 (207)
Q Consensus        53 ~~l~i~D~~G~~~~--~---~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~  127 (207)
                      .++.+.||||-...  +   ......+..+|++++|.|.++..+..+.  .+.+.+.+.....|+++|.||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCcccc
Confidence            35678999996432  1   1223468899999999999885554442  445555544333699999999998643221


Q ss_pred             ccCCCCCcccCHHHHHHHHHHh------CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          128 LADHPGLVPVTTAQGEELRKQI------GASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       128 ~~~~~~~~~v~~~~~~~~~~~~------~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                                ..+....+....      .....|++||++|.|++++.+.+...
T Consensus       308 ----------dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        308 ----------DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             ----------hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence                      234444543321      23468999999999999999999874

>PRK12740 elongation factor G; Reviewed

Probab=99.32  E-value=5e-12  Score=110.27  Aligned_cols=107  Identities=14%  Similarity=0.039  Sum_probs=72.0

Q ss_pred             EecccccceeeeeeeccCCCC--Cc--ccc--Cce----------e--eee-eeEEEECCeEEEEEEEeCCCCccccccc
Q 028595           10 LFATQVTSFLLYVLSVSGRSS--IW--DYI--PTV----------F--DNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR   70 (207)
Q Consensus        10 iG~~~~GgKssli~~l~~~~~--~~--~~~--~t~----------~--~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~   70 (207)
                      +|..++| ||||+++|+...-  ..  ...  .+.          +  ... ...+..+  .+.+.+|||||+..+...+
T Consensus         1 ig~~~~G-KTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~   77 (668)
T PRK12740          1 VGHSGAG-KTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEV   77 (668)
T ss_pred             CCCCCCc-HHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHH
Confidence            5888999 9999999953210  00  000  011          1  111 1122223  4789999999998877777


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      ..++..+|++++|+|.++.......  .++..+..  .++|+++++||+|+..
T Consensus        78 ~~~l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~--~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         78 ERALRVLDGAVVVVCAVGGVEPQTE--TVWRQAEK--YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHHhCeEEEEEeCCCCcCHHHH--HHHHHHHH--cCCCEEEEEECCCCCC
Confidence            8889999999999999987666554  33333333  3789999999999864

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.32  E-value=2.2e-11  Score=90.63  Aligned_cols=163  Identities=19%  Similarity=0.174  Sum_probs=98.7

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCcccc--Cceeee-eeeEEEECCeEEEEEEEeCCCCccccc--------c---c
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYI--PTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNR--------L---R   70 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~--~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~---~   70 (207)
                      .+|+++|.+++| ||||+|.+++........  +..+.. .......++  ..+.++||||-.....        +   .
T Consensus         1 ~~i~lvG~~g~G-KSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~   77 (196)
T cd01852           1 LRLVLVGKTGAG-KSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCL   77 (196)
T ss_pred             CEEEEECCCCCC-HHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence            379999999999 999999999886432211  111111 122333455  4689999999543321        1   1


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      .....+.|++++|.++.+ .+..+  ...++.+.+..   .-.+++++.|+.|....... .+   ...-.....+.+.+
T Consensus        78 ~~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~-~~---~~~~~~~~l~~l~~  150 (196)
T cd01852          78 SLSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTL-ED---YLENSCEALKRLLE  150 (196)
T ss_pred             HhcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcH-HH---HHHhccHHHHHHHH
Confidence            123467899999999887 33332  23344443322   13688999999996543221 00   00001245666666


Q ss_pred             HhCCcEEEEec-----cCCCCCHHHHHHHHHHHHhC
Q 028595          148 QIGASYYIECS-----SKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       148 ~~~~~~~~e~S-----a~~~~~i~~~f~~i~~~~~~  178 (207)
                      ..+. .|+.++     +..+.++.++++.+.+.+.+
T Consensus       151 ~c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         151 KCGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             HhCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            6665 454444     45678899999999888775

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.30  E-value=3.4e-12  Score=96.87  Aligned_cols=172  Identities=16%  Similarity=0.124  Sum_probs=110.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccc-cCceeeee-eeEEEECCeEEEEEEEeCCCCcc-------cccccccee
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDY-IPTVFDNF-SANVVAEGTTVNLGLWDTAGQED-------YNRLRPLSY   74 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~-~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~   74 (207)
                      ..+|+++|..++| ||||||++..+...+.. .+...+.. ......++  -.+.|||+||-+.       ++.+...++
T Consensus        39 pvnvLi~G~TG~G-KSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          39 PVNVLLMGATGAG-KSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             ceeEEEecCCCCc-HHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            4578899999999 99999999977643322 11111111 11233344  4588999999544       667788899


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC-ccccc--C--CCCCcccCHHHHHHHHHHh
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED-KHYLA--D--HPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~-~~~~~--~--~~~~~~v~~~~~~~~~~~~  149 (207)
                      ...|.++.+.+..|+.---+.  .++..+....-+.|++++.|.+|.... ..+..  .  .+.......+.+....+..
T Consensus       116 ~~~DLvL~l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~  193 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF  193 (296)
T ss_pred             hhccEEEEeccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999987655554  333333333345899999999997543 22211  1  1111222222233222222


Q ss_pred             C-CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          150 G-ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       150 ~-~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      . ..|.+..|...+-|++++...++..+....
T Consensus       194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~  225 (296)
T COG3596         194 QEVKPVVAVSGRLPWGLKELVRALITALPVEA  225 (296)
T ss_pred             hhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence            1 236777888999999999999999987543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.28  E-value=3.4e-12  Score=111.79  Aligned_cols=116  Identities=15%  Similarity=0.008  Sum_probs=80.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCC---------------CCCcc---ccCceeeee-eeEEEECCeEEEEEEEeCCCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGR---------------SSIWD---YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ   63 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~---------------~~~~~---~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~   63 (207)
                      ...+|+++|..++| ||||+++|+..               .+...   ...|+.... ......++..+.+.+|||||+
T Consensus        18 ~irnI~ivGh~~~G-KTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        18 FIRNIGIVAHIDHG-KTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             cccEEEEEEeCCCC-HHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            35799999999999 99999999742               11111   112332222 222335667899999999999


Q ss_pred             ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           64 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      .+|.......+..+|++++|+|..+....+.. ..|. .+..  .+.|+++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~-~~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLR-QALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHH-HHHH--cCCCEEEEEEChhccc
Confidence            99888788889999999999999874333332 2222 2222  3678899999999863

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.27  E-value=5.8e-11  Score=95.90  Aligned_cols=166  Identities=14%  Similarity=0.098  Sum_probs=116.4

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCC--CCcc------cc------Cceeeee-eeEEEECCeEEEEEEEeCCCCcc
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRS--SIWD------YI------PTVFDNF-SANVVAEGTTVNLGLWDTAGQED   65 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~--~~~~------~~------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~   65 (207)
                      |+...+|++|.--..| ||||+..++.+.  |...      ..      ..-|.+. .+...+.-+.+.++|.||||+.+
T Consensus         2 ~~~iRNIAIIAHVDHG-KTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD   80 (603)
T COG1217           2 MEDIRNIAIIAHVDHG-KTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD   80 (603)
T ss_pred             CcccceeEEEEEecCC-cchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC
Confidence            4556799999999999 999999998553  2210      00      1112222 44445555568999999999999


Q ss_pred             ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH
Q 028595           66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL  145 (207)
Q Consensus        66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~  145 (207)
                      |..-.+..++-+|+++++.|+.+..--+.- -.+.+.+.   .+.+.|+|.||+|.+..+..         --.++...+
T Consensus        81 FGGEVERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~---~gL~PIVVvNKiDrp~Arp~---------~Vvd~vfDL  147 (603)
T COG1217          81 FGGEVERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALA---LGLKPIVVINKIDRPDARPD---------EVVDEVFDL  147 (603)
T ss_pred             ccchhhhhhhhcceEEEEEEcccCCCCchh-hhHHHHHH---cCCCcEEEEeCCCCCCCCHH---------HHHHHHHHH
Confidence            999999999999999999999885444432 12222332   27888899999999876531         123445555


Q ss_pred             HHHhCC------cEEEEeccCCC----------CCHHHHHHHHHHHHhCCC
Q 028595          146 RKQIGA------SYYIECSSKTQ----------QNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       146 ~~~~~~------~~~~e~Sa~~~----------~~i~~~f~~i~~~~~~~~  180 (207)
                      .-.++.      .|.+..|+..|          .++..+|+.|++.+..+.
T Consensus       148 f~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         148 FVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             HHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            544442      27788888765          579999999999988765

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.27  E-value=4e-12  Score=103.27  Aligned_cols=186  Identities=14%  Similarity=0.049  Sum_probs=118.7

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc---c-cccccc----ee-
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED---Y-NRLRPL----SY-   74 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---~-~~~~~~----~~-   74 (207)
                      ..++++|.++|| ||||+|.++..... +.|.-|.-.-|  .-.++.+...+++.||||--+   . +...++    .+ 
T Consensus       169 rTlllcG~PNVG-KSSf~~~vtradvevqpYaFTTksL~--vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA  245 (620)
T KOG1490|consen  169 RTLLVCGYPNVG-KSSFNNKVTRADDEVQPYAFTTKLLL--VGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA  245 (620)
T ss_pred             CeEEEecCCCCC-cHhhcccccccccccCCcccccchhh--hhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence            467999999999 99999999877643 23332221111  112233456788999999221   1 111111    11 


Q ss_pred             cCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHH---HHHHHHHHh
Q 028595           75 RGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA---QGEELRKQI  149 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~  149 (207)
                      .--.+++++.|++...  |...- -.++..|.....+.|.|+|.||+|+-.....          ..+   ..+.+.. -
T Consensus       246 HLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~edL----------~~~~~~ll~~~~~-~  313 (620)
T KOG1490|consen  246 HLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPEDL----------DQKNQELLQTIID-D  313 (620)
T ss_pred             HhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCcccc----------CHHHHHHHHHHHh-c
Confidence            1135899999998642  33333 2445555554569999999999998765542          332   2333333 3


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccCC-CeEEeeecCCcccc
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQR-GCLLNVFCGRNLVR  205 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~-~c~~~~~~~~~~~~  205 (207)
                      +..+++++|+.+.+|+.++-...++.++..+-..+.+.++.. .-+..+++.+|..|
T Consensus       314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p~~r  370 (620)
T KOG1490|consen  314 GNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIHLAEPAAR  370 (620)
T ss_pred             cCceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcc
Confidence            434899999999999999999999999988766666555554 45555666776655

>PRK00007 elongation factor G; Reviewed

Probab=99.20  E-value=4.7e-11  Score=104.31  Aligned_cols=142  Identities=14%  Similarity=0.118  Sum_probs=89.2

Q ss_pred             ccceeEEEEecccccceeeeeeeccC--CCCC-----c------cccC---ceeeee---eeEEEECCeEEEEEEEeCCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSG--RSSI-----W------DYIP---TVFDNF---SANVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~--~~~~-----~------~~~~---t~~~~~---~~~~~~~~~~~~l~i~D~~G   62 (207)
                      +...+|+++|..++| ||||+++|+.  +...     .      ++.+   .-+.+.   ...+..+  ...+.+.||||
T Consensus         8 ~~Irni~iiG~~~~G-KsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG   84 (693)
T PRK00007          8 ERYRNIGIMAHIDAG-KTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG   84 (693)
T ss_pred             cceeEEEEECCCCCC-HHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence            345699999999999 9999999963  2110     0      0000   001111   1122333  46789999999


Q ss_pred             CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH
Q 028595           63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  142 (207)
Q Consensus        63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~  142 (207)
                      +..+.......+..+|++++|.|....-..+..  ..+..+...  +.|.+++.||+|+.+..            .....
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~~------------~~~~~  148 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGAD------------FYRVV  148 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCCC------------HHHHH
Confidence            987766566678889999999998876555543  333344332  78999999999987543            22334


Q ss_pred             HHHHHHhCC---cEEEEeccCCC
Q 028595          143 EELRKQIGA---SYYIECSSKTQ  162 (207)
Q Consensus       143 ~~~~~~~~~---~~~~e~Sa~~~  162 (207)
                      ..+.+.++.   ...+.+|+.++
T Consensus       149 ~~i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        149 EQIKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHHHHHhCCCeeeEEecCccCCc
Confidence            444444443   23445666554

>cd00066 G-alpha G protein alpha subunit

Probab=99.19  E-value=2.7e-10  Score=90.82  Aligned_cols=147  Identities=19%  Similarity=0.267  Sum_probs=96.3

Q ss_pred             ccccCceeeeeeeEEEE--------CCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh----------hhHH
Q 028595           32 WDYIPTVFDNFSANVVA--------EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYE   93 (207)
Q Consensus        32 ~~~~~t~~~~~~~~~~~--------~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~   93 (207)
                      ++|.||..+.+......        .-..+.+.+||++||...+..|.+++.+++++|+|.|+++.          ..+.
T Consensus       132 ~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~  211 (317)
T cd00066         132 PDYIPTEQDILRARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQ  211 (317)
T ss_pred             CCCCCChhHheeeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHH
Confidence            46667765444332211        12357789999999999999999999999999999999974          4555


Q ss_pred             HHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcc-------cccCCCCCcccCHHHHHHHHHH-----h----CCcEEEE
Q 028595           94 NVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKH-------YLADHPGLVPVTTAQGEELRKQ-----I----GASYYIE  156 (207)
Q Consensus        94 ~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~-----~----~~~~~~e  156 (207)
                      +....|...+.... .+.|+++++||.|+.....       .+.+..+.. -..+.+..|...     .    .....+.
T Consensus       212 esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~-~~~~~~~~~i~~~F~~~~~~~~~~~~~~~  290 (317)
T cd00066         212 ESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPP-NDYEEAAKFIRKKFLDLNRNPNKEIYPHF  290 (317)
T ss_pred             HHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCC-CCHHHHHHHHHHHHHHhhcCCCCeEEEEe
Confidence            55444444444333 5899999999999754221       111111111 133444444332     1    1123456


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028595          157 CSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|.+..++..+|..+...++..
T Consensus       291 t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         291 TCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             ccccchHHHHHHHHHHHHHHHHH
Confidence            89999999999999998887754

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.16  E-value=4.7e-10  Score=88.73  Aligned_cols=87  Identities=20%  Similarity=0.229  Sum_probs=67.8

Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  152 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  152 (207)
                      ...++|++++|+|++++++.......|+..+..  .++|+++|+||+|+.+...           ......++.+.++. 
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-----------~~~~~~~~~~~~g~-  142 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-----------EARELLALYRAIGY-  142 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-----------HHHHHHHHHHHCCC-
Confidence            458999999999999887766655778777654  4799999999999963322           23344455566777 


Q ss_pred             EEEEeccCCCCCHHHHHHHHH
Q 028595          153 YYIECSSKTQQNVKAVFDAAI  173 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~  173 (207)
                      +++.+||+++.|++++++.+.
T Consensus       143 ~v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        143 DVLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             eEEEEeCCCCccHHHHHhhcc
Confidence            899999999999999998774

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.13  E-value=4.4e-10  Score=90.52  Aligned_cols=158  Identities=12%  Similarity=0.079  Sum_probs=100.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCC----CCCc-------------cccC---ceeeeee---eEEE---ECCeEEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR----SSIW-------------DYIP---TVFDNFS---ANVV---AEGTTVNLGL   57 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~----~~~~-------------~~~~---t~~~~~~---~~~~---~~~~~~~l~i   57 (207)
                      .+.|.++|.-++| ||||+|+|.+.    +...             +...   |+++...   ..+.   .++....+.+
T Consensus        17 ~IyIGvvGpvrtG-KSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        17 DIYIGVVGPVRTG-KSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             cEEEEEEcCCCCC-hHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4689999999999 99999999988    4331             1111   1112111   1122   2455678899


Q ss_pred             EeCCCCccccc-------c----------------------ccceec-CCcEEEEEE-eCC----ChhhHHHHHHHHHHH
Q 028595           58 WDTAGQEDYNR-------L----------------------RPLSYR-GADVFVLAF-SLV----SRASYENVLKKWIPE  102 (207)
Q Consensus        58 ~D~~G~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~~  102 (207)
                      .||+|-.....       -                      .+..+. ++|+.|+|. |.+    .++.+.++...+++.
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            99998322111       0                      123344 789999998 654    234555555678888


Q ss_pred             HhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC--CCCCHHHHHHHHHHHHh
Q 028595          103 LQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK--TQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       103 i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~--~~~~i~~~f~~i~~~~~  177 (207)
                      +.+.  ++|++++.|++|-....            +.+.+.++.++++. +++.+|+.  +.++|..+++.++....
T Consensus       176 Lk~~--~kPfiivlN~~dp~~~e------------t~~l~~~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL~EFP  237 (492)
T TIGR02836       176 LKEL--NKPFIILLNSTHPYHPE------------TEALRQELEEKYDV-PVLAMDVESMRESDILSVLEEVLYEFP  237 (492)
T ss_pred             HHhc--CCCEEEEEECcCCCCch------------hHHHHHHHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence            8775  89999999999932111            44556677778886 66665554  45667777766655443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.07  E-value=3e-09  Score=83.71  Aligned_cols=88  Identities=18%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             cceecCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           71 PLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      ...+.++|++++|+|+.++. ++..+ ..|+..+..  .++|+++|+||+|+.+..            .......+....
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~  137 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLDDE------------EEELELVEALAL  137 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCChH------------HHHHHHHHHHhC
Confidence            44588999999999999988 77777 678877765  379999999999996542            112233344556


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHH
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      +. +++.+||+++.|+++++..+..
T Consensus       138 g~-~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         138 GY-PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             CC-eEEEEECCCCccHHHHHhhhcc
Confidence            76 8999999999999999988754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>smart00275 G_alpha G protein alpha subunit

Probab=99.06  E-value=1.5e-09  Score=87.22  Aligned_cols=125  Identities=18%  Similarity=0.275  Sum_probs=85.2

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCc
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLDL  121 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~  121 (207)
                      +.+.+||++|+..++..|.+++.+++++|||.|+++.          ..+.+....|...+.... .+.|++|++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            6688999999999999999999999999999999973          345555444444444322 68999999999997


Q ss_pred             ccCcc-------cccCCCCCcccCHHHHHHHHHH-----hC-----CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          122 REDKH-------YLADHPGLVPVTTAQGEELRKQ-----IG-----ASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       122 ~~~~~-------~~~~~~~~~~v~~~~~~~~~~~-----~~-----~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ....-       .+++..+.  -..+.+..|...     ..     ....+.++|.+..++..+|..+...++..
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~--~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGP--NDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HHHHhCCCchhccCCCCCCC--CCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            54221       11111111  133343333322     11     12445788999999999999988877654

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR00101 ureG urease accessory protein UreG

Probab=99.06  E-value=8.4e-10  Score=82.22  Aligned_cols=102  Identities=20%  Similarity=0.227  Sum_probs=64.2

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE--EEEeeCCCcccCcccccC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV--VLVGTKLDLREDKHYLAD  130 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi--ivv~nK~D~~~~~~~~~~  130 (207)
                      ....+.++.|...-.....   .-+|.+|.|+|+.+.++...   .+.       +++..  ++++||+|+.+....   
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~~---  155 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVGA---  155 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhccccccc---
Confidence            3445667766322111111   12688999999988666432   111       23344  889999999753111   


Q ss_pred             CCCCcccCHHHHHHHHHH-hCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          131 HPGLVPVTTAQGEELRKQ-IGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       131 ~~~~~~v~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                             ..+...+..+. ....+++++||++|+|++++|+++.+.+.
T Consensus       156 -------~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       156 -------DLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             -------cHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence                   34444444444 23358999999999999999999987654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.05  E-value=7.5e-10  Score=86.75  Aligned_cols=116  Identities=13%  Similarity=0.029  Sum_probs=68.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc-------cccee
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-------RPLSY   74 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~~~~   74 (207)
                      ..+|+++|..++| |||++|+|++....  ....++...........+|  ..+.+|||||.......       ...++
T Consensus        38 ~~rIllvGktGVG-KSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        38 SLTILVMGKGGVG-KSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            4689999999999 99999999987642  1222211111112223344  67899999996543211       12222


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCccc
Q 028595           75 --RGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRE  123 (207)
Q Consensus        75 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~  123 (207)
                        ...|++++|..++.. .+.......++.+....   --.+.+|+.|+.|..+
T Consensus       115 ~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence              258999999665432 11111122333333322   1357999999999764

>cd01882 BMS1 Bms1

Probab=99.04  E-value=8.4e-10  Score=83.88  Aligned_cols=142  Identities=16%  Similarity=0.053  Sum_probs=83.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ...|+++|.+++| ||||++.+.+..-........|. +  .+ .......+.++||||.-  ..+ ....+.+|++++|
T Consensus        39 ~~~i~ivG~~~~G-Kstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv  110 (225)
T cd01882          39 PLVVAVVGPPGVG-KTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL  110 (225)
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence            3568999999998 99999999764211111111111 1  11 11234567899999853  222 2335779999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCcccCcccccCCCCCcccCHHHHHH-HHH-HhCCcEEEEeccC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRK-QIGASYYIECSSK  160 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~~~e~Sa~  160 (207)
                      +|.+.......  ..++..+...  +.|. ++|.||.|+.+....      .. ...++++. +.. .....+++.+||+
T Consensus       111 iDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~------~~-~~~~~l~~~~~~~~~~~~ki~~iSa~  179 (225)
T cd01882         111 IDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNKT------LR-KTKKRLKHRFWTEVYQGAKLFYLSGI  179 (225)
T ss_pred             EecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHHH------HH-HHHHHHHHHHHHhhCCCCcEEEEeec
Confidence            99986544433  2445555432  5675 459999998643220      00 01122222 322 2344589999999


Q ss_pred             CCCC
Q 028595          161 TQQN  164 (207)
Q Consensus       161 ~~~~  164 (207)
                      +.-.
T Consensus       180 ~~~~  183 (225)
T cd01882         180 VHGR  183 (225)
T ss_pred             cCCC
Confidence            8743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.03  E-value=6.5e-10  Score=85.50  Aligned_cols=117  Identities=15%  Similarity=0.069  Sum_probs=71.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc--cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc---c-------cc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---L-------RP   71 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~-------~~   71 (207)
                      ..+|+++|..++| ||||+|++++.....  .+.++...........++  ..+.+|||||-.....   .       ..
T Consensus        31 ~~~IllvG~tGvG-KSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I~  107 (249)
T cd01853          31 SLTILVLGKTGVG-KSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSIK  107 (249)
T ss_pred             CeEEEEECCCCCc-HHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence            5799999999999 999999999876432  222222222222333444  5689999999654311   0       12


Q ss_pred             ceec--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC-C--CCcEEEEeeCCCcccCc
Q 028595           72 LSYR--GADVFVLAFSLVSR-ASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLREDK  125 (207)
Q Consensus        72 ~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~-~--~~piivv~nK~D~~~~~  125 (207)
                      .++.  ..|++++|..++.. ....+  ...++.|.... +  -.++++|.||+|.....
T Consensus       108 ~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         108 RYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            2333  46888888766542 22222  23444444322 1  25799999999986543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.02  E-value=5.5e-09  Score=86.78  Aligned_cols=168  Identities=19%  Similarity=0.261  Sum_probs=113.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECC--eEEEEEEEeCCCCccccccccceecC----C
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEG--TTVNLGLWDTAGQEDYNRLRPLSYRG----A   77 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~l~i~D~~G~~~~~~~~~~~~~~----~   77 (207)
                      ..|+|+|+.++| |||||.+|.+.   +++.++.+..|.. .+.-++  ....+.+|-..|...+..+.+..+..    -
T Consensus        26 k~vlvlG~~~~G-Kttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   26 KSVLVLGDKGSG-KTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             ceEEEEeCCCCc-hHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            579999999999 99999998654   3566777877755 332221  23578999998876666665544432    2


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhh--------------------------------c-----------C-------
Q 028595           78 DVFVLAFSLVSRASYENVLKKWIPELQH--------------------------------Y-----------S-------  107 (207)
Q Consensus        78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~--------------------------------~-----------~-------  107 (207)
                      -++++|.|++.|..+.+-+..|+..+++                                .           .       
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            4899999999987665433444433321                                0           0       


Q ss_pred             ---C----------CCcEEEEeeCCCcccC----cccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHH
Q 028595          108 ---P----------GVPVVLVGTKLDLRED----KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD  170 (207)
Q Consensus       108 ---~----------~~piivv~nK~D~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  170 (207)
                         |          ++|++||++|+|....    ..+   ..........-.+.+|-.+|. -.+.||++...+++-+++
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~---~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~  257 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDW---KEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYK  257 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhccc---chhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHH
Confidence               0          2799999999996431    110   000011123447888888998 778899999999999999


Q ss_pred             HHHHHHhCCC
Q 028595          171 AAIKVVIKPP  180 (207)
Q Consensus       171 ~i~~~~~~~~  180 (207)
                      .|...+...+
T Consensus       258 yi~h~l~~~~  267 (472)
T PF05783_consen  258 YILHRLYGFP  267 (472)
T ss_pred             HHHHHhccCC
Confidence            9998887543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd01855 YqeH YqeH

Probab=99.02  E-value=1.1e-09  Score=81.11  Aligned_cols=95  Identities=20%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH
Q 028595           66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL  145 (207)
Q Consensus        66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~  145 (207)
                      ++.++..+++++|++++|+|+++......      ..+.....+.|+++|+||+|+.+...           ..+..+.+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~------~~l~~~~~~~~~ilV~NK~Dl~~~~~-----------~~~~~~~~   86 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSLI------PRLRLFGGNNPVILVGNKIDLLPKDK-----------NLVRIKNW   86 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCccc------hhHHHhcCCCcEEEEEEchhcCCCCC-----------CHHHHHHH
Confidence            46778889999999999999988642221      11211224789999999999865432           33444444


Q ss_pred             H-----HHhCC--cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          146 R-----KQIGA--SYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       146 ~-----~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      .     +..+.  .+++.+||+++.|++++++.+.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3     22332  36899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.01  E-value=2.5e-09  Score=86.78  Aligned_cols=83  Identities=14%  Similarity=0.025  Sum_probs=53.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCe---------------EEEEEEEeCCCCccc-
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDY-   66 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~-   66 (207)
                      -.+|+++|.+|+| ||||+|++++.+... .|..|.-+.....+.+.+.               ..++.+.||||-..- 
T Consensus        21 ~~kvgIVG~PNvG-KSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         21 NLKMGIVGLPNVG-KSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CcEEEEECCCCCC-hHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            3589999999999 999999998776432 3333322222223333322               235899999994321 


Q ss_pred             ---cccccc---eecCCcEEEEEEeCC
Q 028595           67 ---NRLRPL---SYRGADVFVLAFSLV   87 (207)
Q Consensus        67 ---~~~~~~---~~~~~d~~i~v~d~~   87 (207)
                         ..+...   .++++|++++|.|..
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence               122222   356799999999974

>PRK12289 GTPase RsgA; Reviewed

Probab=98.99  E-value=3.4e-09  Score=85.27  Aligned_cols=94  Identities=19%  Similarity=0.214  Sum_probs=69.1

Q ss_pred             cccccccceecCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH
Q 028595           65 DYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE  143 (207)
Q Consensus        65 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~  143 (207)
                      +-..+.+..+.++|.+++|+|+.++. +...+ ..|+..+..  .++|+++|+||+|+.+...            .....
T Consensus        78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~------------~~~~~  142 (352)
T PRK12289         78 RKTELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE------------QQQWQ  142 (352)
T ss_pred             cccceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH------------HHHHH
Confidence            33445566789999999999999876 44444 677766543  4899999999999964321            12223


Q ss_pred             HHHHHhCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595          144 ELRKQIGASYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       144 ~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      ...+.+|+ +++.+||.++.|++++++.+..
T Consensus       143 ~~~~~~g~-~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        143 DRLQQWGY-QPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             HHHHhcCC-eEEEEEcCCCCCHHHHhhhhcc
Confidence            33356787 8899999999999999998854

>cd01859 MJ1464 MJ1464

Probab=98.99  E-value=1.1e-09  Score=78.43  Aligned_cols=94  Identities=15%  Similarity=0.105  Sum_probs=65.6

Q ss_pred             cccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595           67 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR  146 (207)
Q Consensus        67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~  146 (207)
                      +.+.++.++++|++++|+|++++....+.  .+...+..  .+.|+++|+||+|+.+...            ......+.
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~~~~~~~~   66 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV------------LEKWKSIK   66 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH------------HHHHHHHH
Confidence            44567788889999999999886543332  23333322  3689999999999853321            11222344


Q ss_pred             HHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       147 ~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      +..+. +++.+||+++.|++++++.+.+.+.
T Consensus        67 ~~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          67 ESEGI-PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             HhCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence            44555 7899999999999999999988765

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.98  E-value=5.4e-09  Score=81.30  Aligned_cols=166  Identities=16%  Similarity=0.198  Sum_probs=112.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEEC---CeEEEEEEEeCCCCccccccccceecCC----
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAE---GTTVNLGLWDTAGQEDYNRLRPLSYRGA----   77 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~----   77 (207)
                      ..|+++|+.++| |||||.+|-+-.   .+.+.-|..|..--..+   +....+.+|=..|..--.++....+...    
T Consensus        53 k~VlvlGdn~sG-KtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   53 KNVLVLGDNGSG-KTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CeEEEEccCCCc-hhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            578999999999 999999986654   44455555554422222   2245677888877654444444443322    


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhh-------------------------cC-------------------------
Q 028595           78 DVFVLAFSLVSRASYENVLKKWIPELQH-------------------------YS-------------------------  107 (207)
Q Consensus        78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~-------------------------~~-------------------------  107 (207)
                      -.+|++.|++++..+.+-...|...+.+                         +.                         
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            4899999999996655554777665542                         00                         


Q ss_pred             ------------CCCcEEEEeeCCCcc----cCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHH
Q 028595          108 ------------PGVPVVLVGTKLDLR----EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA  171 (207)
Q Consensus       108 ------------~~~piivv~nK~D~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  171 (207)
                                  =++|++||.+|+|..    ...+.   ...-.......++.||-++|. -.+.+|++...|++-++..
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~ey---rDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKY  284 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEY---RDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKY  284 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchh---hHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHH
Confidence                        017999999999973    21110   000111233558889999998 8899999999999999999


Q ss_pred             HHHHHhC
Q 028595          172 AIKVVIK  178 (207)
Q Consensus       172 i~~~~~~  178 (207)
                      |+..++-
T Consensus       285 ivhr~yG  291 (473)
T KOG3905|consen  285 IVHRSYG  291 (473)
T ss_pred             HHHHhcC
Confidence            9998863

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=2.9e-09  Score=90.43  Aligned_cols=169  Identities=13%  Similarity=0.122  Sum_probs=101.0

Q ss_pred             ceeE-EEEecccccceeeeeeeccCCCCCcccc----CceeeeeeeEEEE---------CCe----EEEEEEEeCCCCcc
Q 028595            4 LAKL-ACLFATQVTSFLLYVLSVSGRSSIWDYI----PTVFDNFSANVVA---------EGT----TVNLGLWDTAGQED   65 (207)
Q Consensus         4 ~~ki-~iiG~~~~GgKssli~~l~~~~~~~~~~----~t~~~~~~~~~~~---------~~~----~~~l~i~D~~G~~~   65 (207)
                      +..| ||+|--..| ||-|+..+.+.+......    ..+|.+|...-.+         +++    ---+.++||||++.
T Consensus       474 RSPIcCilGHVDTG-KTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  474 RSPICCILGHVDTG-KTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             CCceEEEeeccccc-chHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            3444 455555566 999999998766543222    2223333111100         111    12368999999999


Q ss_pred             ccccccceecCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC---cc---
Q 028595           66 YNRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL---VP---  136 (207)
Q Consensus        66 ~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~---~~---  136 (207)
                      |..++......||.+|+|.|+...   ++.+.+     ++++.  .+.|+||++||+|..-........+..   .+   
T Consensus       553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k  625 (1064)
T KOG1144|consen  553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK  625 (1064)
T ss_pred             hhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence            999999999999999999999864   444443     33333  389999999999974322110000000   00   


Q ss_pred             -cC------HHH-HHHHHHH-hC------------CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          137 -VT------TAQ-GEELRKQ-IG------------ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       137 -v~------~~~-~~~~~~~-~~------------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                       +.      ... .-+|++. ++            +..++++||.+|+||-+++.+|++......
T Consensus       626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m  690 (1064)
T KOG1144|consen  626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM  690 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence             00      000 1112111 11            124567999999999999999998876543

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.91  E-value=2.8e-08  Score=79.85  Aligned_cols=82  Identities=13%  Similarity=0.030  Sum_probs=53.4

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCe---------------EEEEEEEeCCCCccc--
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDY--   66 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~--   66 (207)
                      .+|+++|.+|+| ||||+|++++.+.. ..|..|+-+.....+.+.+.               ...+.+.|+||-..-  
T Consensus         3 ~~vgIVG~PNvG-KSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVG-KSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCC-HHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            589999999999 99999999987732 23333322222223333331               135899999994321  


Q ss_pred             --cccccc---eecCCcEEEEEEeCC
Q 028595           67 --NRLRPL---SYRGADVFVLAFSLV   87 (207)
Q Consensus        67 --~~~~~~---~~~~~d~~i~v~d~~   87 (207)
                        ..+...   .++.+|++++|+|..
T Consensus        82 ~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         82 KGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              122222   356899999999974

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.91  E-value=5.2e-09  Score=78.86  Aligned_cols=163  Identities=19%  Similarity=0.138  Sum_probs=92.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCcccc--Cceeeee-eeEEEECCeEEEEEEEeCCCCcccccc-------c----
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYI--PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL-------R----   70 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~--~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~----   70 (207)
                      .+|+++|..++| |||++|.+++........  ....... .....++|  ..+.++||||--.....       .    
T Consensus         1 l~IlllG~tGsG-KSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l   77 (212)
T PF04548_consen    1 LRILLLGKTGSG-KSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCL   77 (212)
T ss_dssp             EEEEEECSTTSS-HHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence            379999999999 999999999887533221  1111112 33446677  55789999994322110       0    


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccC---HHHHHHH
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT---TAQGEEL  145 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~---~~~~~~~  145 (207)
                      .....+.+++++|+.+. +-+..+.  ...+...+... --..++|+.|..|....... .+     -+.   ....+.+
T Consensus        78 ~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~-~~-----~l~~~~~~~l~~l  149 (212)
T PF04548_consen   78 SLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSL-ED-----YLKKESNEALQEL  149 (212)
T ss_dssp             HHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTH-HH-----HHHHHHHHHHHHH
T ss_pred             HhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccH-HH-----HHhccCchhHhHH
Confidence            11235689999999988 3332222  12223333211 12468889998886654321 00     001   1235677


Q ss_pred             HHHhCCcEEEEeccC------CCCCHHHHHHHHHHHHhCC
Q 028595          146 RKQIGASYYIECSSK------TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       146 ~~~~~~~~~~e~Sa~------~~~~i~~~f~~i~~~~~~~  179 (207)
                      .+..+. .|+.++..      ....+.+++..+-+.+...
T Consensus       150 i~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  150 IEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             HHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            777887 77877776      2346777777777666544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.91  E-value=5.4e-09  Score=92.09  Aligned_cols=115  Identities=16%  Similarity=0.047  Sum_probs=77.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC--CCc---------cccC-------ceeeee-eeEEEECCeEEEEEEEeCCCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS--SIW---------DYIP-------TVFDNF-SANVVAEGTTVNLGLWDTAGQ   63 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~~~---------~~~~-------t~~~~~-~~~~~~~~~~~~l~i~D~~G~   63 (207)
                      ...+|+++|..++| ||||+.+++...  ...         ++.+       |+.... ......++..+.+.++||||+
T Consensus        19 ~iRni~iigh~d~G-KTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         19 QIRNIGIIAHIDHG-KTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             cccEEEEEEeCCCC-HHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            35689999999999 999999997421  111         0101       000000 011122445788999999999


Q ss_pred             ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           64 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      .+|.......+..+|++++|+|.......+.. ..|. .....  +.|.+++.||+|+.
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~-~~~~~--~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLR-QALRE--RVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHH-HHHHc--CCCeEEEEECchhh
Confidence            99887778888999999999998876444433 3333 22222  56789999999976

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.90  E-value=1.3e-08  Score=79.92  Aligned_cols=154  Identities=17%  Similarity=0.100  Sum_probs=95.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC--c--------cc--cCceeeeeeeEEEEC--------------------Ce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI--W--------DY--IPTVFDNFSANVVAE--------------------GT   51 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~--------~~--~~t~~~~~~~~~~~~--------------------~~   51 (207)
                      ..+.+.+|.-.-| |||||-||+...-.  +        ..  ..|.|+.+...+.+|                    -.
T Consensus         6 lLRfiTcGSVDDG-KSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           6 LLRFITCGSVDDG-KSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             ceeEEEeccccCc-chhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            4678899999999 99999999854311  1        00  122221111111111                    12


Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  131 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~  131 (207)
                      .-++.+-||||++.|...--.=..-||+.|++.|+...-.-+.-.+.++..+-   .=..++++.||+||.+..+.    
T Consensus        85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e~----  157 (431)
T COG2895          85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSEE----  157 (431)
T ss_pred             cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccCHH----
Confidence            34678999999999865333334558999999998653332222222333322   23678999999999886542    


Q ss_pred             CCCcccCHHHHHHHHHHhCC--cEEEEeccCCCCCHHH
Q 028595          132 PGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA  167 (207)
Q Consensus       132 ~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~  167 (207)
                        ...-..++-..|+..++.  ..++++||..|+|+-.
T Consensus       158 --~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         158 --VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             --HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence              000133556678888875  3588999999998753

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.90  E-value=1.1e-09  Score=97.66  Aligned_cols=115  Identities=12%  Similarity=0.074  Sum_probs=78.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCC--Cc---------cccCce---eeeee---eEEE--------------ECCe
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSS--IW---------DYIPTV---FDNFS---ANVV--------------AEGT   51 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~--~~---------~~~~t~---~~~~~---~~~~--------------~~~~   51 (207)
                      ...+|+++|..++| ||||+.+++...-  ..         ++.+.-   +.++.   ..+.              .++.
T Consensus        18 ~Irni~iiGhvd~G-KTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         18 NIRNMSVIAHVDHG-KSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             CccEEEEEcCCCCC-HHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            45699999999999 9999999874321  10         011100   00010   0111              1223


Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      .+.++++||||+.+|-......++.+|++|+|.|+.+.-..... ..|.....   .++|++++.||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH---CCCCEEEEEECCccc
Confidence            67889999999999987777888899999999999987555543 33433332   279999999999987

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=1.2e-08  Score=81.77  Aligned_cols=157  Identities=14%  Similarity=-0.002  Sum_probs=93.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CCcc----------------------ccCce-----eeeeee-EEEECCeEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWD----------------------YIPTV-----FDNFSA-NVVAEGTTV   53 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~----------------------~~~t~-----~~~~~~-~~~~~~~~~   53 (207)
                      ..+++++|.-.+| ||||+-+|+..-  ++..                      .+.|-     |.+... ........+
T Consensus         7 h~nl~~iGHVD~G-KSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~   85 (428)
T COG5256           7 HLNLVFIGHVDAG-KSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY   85 (428)
T ss_pred             ceEEEEEcCCCCC-chhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence            4689999999999 999999987432  2210                      00111     111111 111122346


Q ss_pred             EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHH-----HHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc
Q 028595           54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-----VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL  128 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~  128 (207)
                      .+.|.|+||+..|-...-.-...||+.|+|.|.++.+.-..     ......-+.... .-..++++.||.|+.+-++. 
T Consensus        86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde~-  163 (428)
T COG5256          86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDEE-  163 (428)
T ss_pred             eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccCHH-
Confidence            78999999988776544444566899999999998631111     001111111111 13458999999999864321 


Q ss_pred             cCCCCCcccCHHHHHHHHHHhCCc----EEEEeccCCCCCHHHH
Q 028595          129 ADHPGLVPVTTAQGEELRKQIGAS----YYIECSSKTQQNVKAV  168 (207)
Q Consensus       129 ~~~~~~~~v~~~~~~~~~~~~~~~----~~~e~Sa~~~~~i~~~  168 (207)
                           ....-..+...+.+..|+.    +|+++|+..|.|+.+.
T Consensus       164 -----rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         164 -----RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             -----HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence                 0001223445566666653    5999999999998653

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.90  E-value=1.1e-08  Score=76.86  Aligned_cols=102  Identities=17%  Similarity=0.092  Sum_probs=61.0

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  132 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~  132 (207)
                      ..+.+.++.|.-...   ..+....+..+.|.|+.+.+....   .....+     ..|.++++||+|+.+....     
T Consensus       103 ~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~---~~~~~~-----~~a~iiv~NK~Dl~~~~~~-----  166 (207)
T TIGR00073       103 IDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL---KYPGMF-----KEADLIVINKADLAEAVGF-----  166 (207)
T ss_pred             CCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh---hhHhHH-----hhCCEEEEEHHHccccchh-----
Confidence            355677777721100   111123456667788775433211   111111     4678999999999754221     


Q ss_pred             CCcccCHHHHHHHHHHhC-CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          133 GLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       133 ~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                           ......+..+..+ ..+++++||+++.|++++|+++.+.
T Consensus       167 -----~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       167 -----DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             -----hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence                 2344444444443 3489999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PTZ00416 elongation factor 2; Provisional

Probab=98.90  E-value=2e-09  Score=95.87  Aligned_cols=115  Identities=12%  Similarity=0.048  Sum_probs=77.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC--CCc---------cccCce---eeee---eeEEEEC--------CeEEEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS--SIW---------DYIPTV---FDNF---SANVVAE--------GTTVNLGL   57 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~~~---------~~~~t~---~~~~---~~~~~~~--------~~~~~l~i   57 (207)
                      ...+|+++|..++| ||||+.+|+...  ...         ++.+.-   +.+.   ...+..+        ++.+.+.+
T Consensus        18 ~irni~iiGh~d~G-KTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         18 QIRNMSVIAHVDHG-KSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             CcCEEEEECCCCCC-HHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            45699999999999 999999997531  110         000000   0000   0011111        23577999


Q ss_pred             EeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           58 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        58 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      +||||+.++.......++.+|++|+|.|..+.-..+.. ..| ..+..  .++|++++.||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~-~~~~~--~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVL-RQALQ--ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHH-HHHHH--cCCCEEEEEEChhhh
Confidence            99999998877778888999999999999886554443 333 33333  268999999999986

>PRK12288 GTPase RsgA; Reviewed

Probab=98.88  E-value=1.9e-08  Score=80.99  Aligned_cols=90  Identities=17%  Similarity=0.229  Sum_probs=68.5

Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  152 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  152 (207)
                      ...|+|.+++|++++...++..+ ..|+..+..  .++|+++|+||+|+.+....         ....+.....+.+++ 
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~~---------~~~~~~~~~y~~~g~-  183 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEGR---------AFVNEQLDIYRNIGY-  183 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHHH---------HHHHHHHHHHHhCCC-
Confidence            35789999999999988888887 788776653  47999999999999654310         012233334456777 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHH
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +++++||+++.|++++++.+...
T Consensus       184 ~v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        184 RVLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             eEEEEeCCCCcCHHHHHHHHhhC
Confidence            89999999999999999988653

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.86  E-value=3.2e-09  Score=76.86  Aligned_cols=63  Identities=19%  Similarity=0.151  Sum_probs=45.0

Q ss_pred             EEEEEeCCCCcc----ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCC
Q 028595           54 NLGLWDTAGQED----YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL  119 (207)
Q Consensus        54 ~l~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~  119 (207)
                      .+.|+||||-..    ...++..|+..+|++|+|.+.++..+-.+. ..+.......  ...+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence            467999999532    235677888999999999999997666655 5555555443  33488999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.85  E-value=6.3e-09  Score=83.68  Aligned_cols=167  Identities=16%  Similarity=0.069  Sum_probs=83.4

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCc-cccCcee--eeee-eEEEECCeEEEEEEEeCCCCccccccccc-----e
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVF--DNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPL-----S   73 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~--~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~-----~   73 (207)
                      ...+|+|+|.+++| ||||||.|.+-.-.+ ...+|..  .+.. ..+... ..-.+.+||+||-.....-...     -
T Consensus        34 ~~l~IaV~G~sGsG-KSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   34 APLNIAVTGESGSG-KSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             --EEEEEEESTTSS-HHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             CceEEEEECCCCCC-HHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            36799999999999 999999997643322 2222211  1111 122222 2224789999995432222222     2


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH----HHHHHHHHH-
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT----AQGEELRKQ-  148 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~----~~~~~~~~~-  148 (207)
                      +..-|.+|++.+-.  -+..++  .+...+.+.  +.|+++|-+|+|..-..+.   ...++....    ++.++.+.. 
T Consensus       112 ~~~yD~fiii~s~r--f~~ndv--~La~~i~~~--gK~fyfVRTKvD~Dl~~~~---~~~p~~f~~e~~L~~IR~~c~~~  182 (376)
T PF05049_consen  112 FYRYDFFIIISSER--FTENDV--QLAKEIQRM--GKKFYFVRTKVDSDLYNER---RRKPRTFNEEKLLQEIRENCLEN  182 (376)
T ss_dssp             GGG-SEEEEEESSS----HHHH--HHHHHHHHT--T-EEEEEE--HHHHHHHHH---CC-STT--HHTHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCC--CchhhH--HHHHHHHHc--CCcEEEEEecccccHhhhh---ccCCcccCHHHHHHHHHHHHHHH
Confidence            44579888887742  233332  455666654  8999999999996211100   000111122    223333322 


Q ss_pred             ---hC--CcEEEEeccCC--CCCHHHHHHHHHHHHhCCC
Q 028595          149 ---IG--ASYYIECSSKT--QQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       149 ---~~--~~~~~e~Sa~~--~~~i~~~f~~i~~~~~~~~  180 (207)
                         .|  .++.|-+|+.+  ..++..+.+.+.+.+..++
T Consensus       183 L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  183 LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence               23  24788888886  3568888888888877654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.83  E-value=8.5e-09  Score=83.64  Aligned_cols=96  Identities=24%  Similarity=0.357  Sum_probs=70.3

Q ss_pred             CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH
Q 028595           63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  142 (207)
Q Consensus        63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~  142 (207)
                      ++.|+.+...+..+++++++|+|+.+...      .|.+.+.+...+.|+++|+||+|+.+...           ..+.+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~~-----------~~~~~  112 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKSV-----------NLSKI  112 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCCC-----------CHHHH
Confidence            56778888889999999999999977542      23333333334789999999999965331           33344


Q ss_pred             H----HHHHHhCCc--EEEEeccCCCCCHHHHHHHHHHH
Q 028595          143 E----ELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       143 ~----~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      .    ++++.+++.  .++.+||+++.|++++|+.+.+.
T Consensus       113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            4    346666752  48899999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13768 GTPase; Provisional

Probab=98.83  E-value=2e-08  Score=77.70  Aligned_cols=124  Identities=19%  Similarity=0.163  Sum_probs=71.6

Q ss_pred             EEEEEeCCCCccc---cccccceec---C--CcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           54 NLGLWDTAGQEDY---NRLRPLSYR---G--ADVFVLAFSLVSRASYENVL-KKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        54 ~l~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      .+.+||+||+...   +..++.+++   .  ++++++|+|.+......+.. ..|+........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            5789999997653   333332322   2  89999999996544333321 2333322222248999999999998765


Q ss_pred             ccc--ccCCCCCc-----------ccCHHHHHH---HHHHhCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          125 KHY--LADHPGLV-----------PVTTAQGEE---LRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       125 ~~~--~~~~~~~~-----------~v~~~~~~~---~~~~~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      .+.  ........           .......++   ..+..+. .+++++|+++++|++++.+++.+.+.
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            331  00000000           000000111   1223342 37899999999999999999987764

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=2.1e-08  Score=78.66  Aligned_cols=169  Identities=18%  Similarity=0.170  Sum_probs=100.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCc--cccCce-----eee--eeeEE------EECCeEEEEEEEeCCCCcccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTV-----FDN--FSANV------VAEGTTVNLGLWDTAGQEDYN   67 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~-----~~~--~~~~~------~~~~~~~~l~i~D~~G~~~~~   67 (207)
                      ...++.++|--.+| ||+|.+++..-....  +..|+.     ..+  |+...      -..++..++.+.|+||+...-
T Consensus         6 ~n~N~GiLGHvDSG-KTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    6 SNLNLGILGHVDSG-KTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             ceeeeeeEeeccCc-hHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            46789999999999 999999986433211  111211     111  11111      114677889999999986532


Q ss_pred             ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      ...-.-.+-.|..++|.|+.....-+.+..-.+..+-    ....++|.||+|..++.+..+       ...+.+.+..+
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~s-------ki~k~~kk~~K  153 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRAS-------KIEKSAKKVRK  153 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhh-------HHHHHHHHHHH
Confidence            2111222335788999999864333333112222221    344788889999766543200       12233444444


Q ss_pred             Hh------CCcEEEEeccCCC----CCHHHHHHHHHHHHhCCCcch
Q 028595          148 QI------GASYYIECSSKTQ----QNVKAVFDAAIKVVIKPPQKQ  183 (207)
Q Consensus       148 ~~------~~~~~~e~Sa~~~----~~i~~~f~~i~~~~~~~~~~~  183 (207)
                      .+      |-.|++++||..|    +.+.++.+.+-..+..+..+.
T Consensus       154 tLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~  199 (522)
T KOG0461|consen  154 TLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE  199 (522)
T ss_pred             HHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence            33      2258999999999    778888888877777765543

>cd01858 NGP_1 NGP-1

Probab=98.79  E-value=5.1e-08  Score=69.95  Aligned_cols=90  Identities=14%  Similarity=0.053  Sum_probs=58.3

Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  152 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  152 (207)
                      .+.++|++++|.|++++....+  ..+...+.....+.|+++|.||+|+.+...           .......+.+.+.. 
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~-   70 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT-   70 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence            4678999999999998743322  233333333334689999999999954321           11222233322222 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHH
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      ..+.+||+++.|++++.+.+...+
T Consensus        71 ~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          71 IAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EEEEeeccccccHHHHHHHHHHHH
Confidence            246799999999999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.78  E-value=3.9e-08  Score=78.44  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=67.5

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  131 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~  131 (207)
                      .+.+.+.||+|-..-...   ....+|.++++.+....+..+.. ..  ..+     ...-++|.||+|+.+....    
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~-k~--gi~-----E~aDIiVVNKaDl~~~~~a----  212 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI-KK--GIM-----ELADLIVINKADGDNKTAA----  212 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH-Hh--hhh-----hhhheEEeehhcccchhHH----
Confidence            477889999996532221   45679999999765555555544 11  111     2224899999998754320    


Q ss_pred             CCCcccCHHHHHHHHHHhC-----C-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          132 PGLVPVTTAQGEELRKQIG-----A-SYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       132 ~~~~~v~~~~~~~~~~~~~-----~-~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                          .-...+.+.......     + .+++.+||+++.|++++++.+.+.+.
T Consensus       213 ----~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        213 ----RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             ----HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                002222333322211     1 47899999999999999999998765

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.76  E-value=4e-10  Score=86.15  Aligned_cols=121  Identities=21%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             EEEEEeCCCCcccccccccee--------cCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           54 NLGLWDTAGQEDYNRLRPLSY--------RGADVFVLAFSLV---SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      ...|+|||||-+....+...-        ...-+++++.|..   ++..+-..  .++......+-+.|.+.|.||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHhhCCCCEEEeeeccCcc
Confidence            678999999987644433221        3456888888876   44444433  2222221111389999999999997


Q ss_pred             cCcc--ccc---CCCCC-------cccCHHHHHHHHHHhCCc-EEEEeccCCCCCHHHHHHHHHHHH
Q 028595          123 EDKH--YLA---DHPGL-------VPVTTAQGEELRKQIGAS-YYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       123 ~~~~--~~~---~~~~~-------~~v~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +...  .+.   +....       .....+....+..+++.. .++.+|+.+++++++++..+-+.+
T Consensus       170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            6210  000   00000       000111222222333555 799999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd01900 YchF YchF subfamily

Probab=98.76  E-value=2.6e-08  Score=77.46  Aligned_cols=80  Identities=11%  Similarity=0.006  Sum_probs=51.4

Q ss_pred             EEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCe---------------EEEEEEEeCCCCccc----
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDY----   66 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~----   66 (207)
                      |+++|.+++| ||||+|++++.+... .|..|+-+.....+.+.+.               ...+.++|+||--.-    
T Consensus         1 igivG~PN~G-KSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~   79 (274)
T cd01900           1 IGIVGLPNVG-KSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             CeEeCCCCCc-HHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence            5799999999 999999999887532 2332222222233344332               235899999994321    


Q ss_pred             cccccce---ecCCcEEEEEEeCC
Q 028595           67 NRLRPLS---YRGADVFVLAFSLV   87 (207)
Q Consensus        67 ~~~~~~~---~~~~d~~i~v~d~~   87 (207)
                      ..+...+   ++++|++++|+|..
T Consensus        80 ~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          80 EGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hHHHHHHHHHHHhCCEEEEEEeCc
Confidence            2222233   56799999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.74  E-value=1.1e-07  Score=74.58  Aligned_cols=116  Identities=13%  Similarity=0.141  Sum_probs=67.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccc---c-------Ccee-eeeeeEEEECCeEEEEEEEeCCCCccc-----
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDY---I-------PTVF-DNFSANVVAEGTTVNLGLWDTAGQEDY-----   66 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~---~-------~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~-----   66 (207)
                      ..++|+++|..+.| ||||||.|++.......   .       ++.. ......+.-++..+.+.++||||-...     
T Consensus         3 ~~fnImVvG~sG~G-KTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~   81 (281)
T PF00735_consen    3 FNFNIMVVGESGLG-KTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSD   81 (281)
T ss_dssp             EEEEEEEEECTTSS-HHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCH
T ss_pred             ceEEEEEECCCCCC-HHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchh
Confidence            46899999999999 99999999987654331   1       1111 112234455778899999999992110     


Q ss_pred             --------------------cccc--cceecCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           67 --------------------NRLR--PLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        67 --------------------~~~~--~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                                          ....  ...=...|+++++.+.+.. -+-.++  .++..+.   .-+++|-|..|+|...
T Consensus        82 ~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls---~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   82 CWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI--EFMKRLS---KRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH--HHHHHHT---TTSEEEEEESTGGGS-
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH--HHHHHhc---ccccEEeEEecccccC
Confidence                                0001  1111246888888887642 222232  3444554   3688999999999854


Q ss_pred             C
Q 028595          124 D  124 (207)
Q Consensus       124 ~  124 (207)
                      .
T Consensus       157 ~  157 (281)
T PF00735_consen  157 P  157 (281)
T ss_dssp             H
T ss_pred             H
Confidence            3

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.69  E-value=2.9e-08  Score=75.61  Aligned_cols=115  Identities=18%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             EEEEEEeCCCCcc-cc-----ccccceec--CCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCc
Q 028595           53 VNLGLWDTAGQED-YN-----RLRPLSYR--GADVFVLAFSLV---SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL  121 (207)
Q Consensus        53 ~~l~i~D~~G~~~-~~-----~~~~~~~~--~~d~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~  121 (207)
                      ....|+|||||-. |.     ++....+.  ..-+++++.|..   ++..|-.-+-+-...+.+  -..|++++.||+|+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDV  193 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccc
Confidence            5678999999743 21     11111222  245677777753   455555542222223332  38999999999999


Q ss_pred             ccCcccccCCCCCcccCHHHHHHHHH-----------------------HhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          122 REDKHYLADHPGLVPVTTAQGEELRK-----------------------QIGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       122 ~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------------~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      .++.-..        ....+-+.|.+                       -+.-...+-+||.+|.|.+++|..+-+.+-
T Consensus       194 ~d~~fa~--------eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  194 SDSEFAL--------EWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             cccHHHH--------HHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence            8753210        01112222211                       122235678999999999999999988775

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.67  E-value=1.7e-08  Score=76.90  Aligned_cols=158  Identities=15%  Similarity=0.037  Sum_probs=93.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcccc-CceeeeeeeEEEECCeEEEEEEEeCCC----------Cccccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYI-PTVFDNFSANVVAEGTTVNLGLWDTAG----------QEDYNRLRPL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~~   72 (207)
                      +..++++|.+||| ||+|||.+...+...... ++.|.+...+...-|  -.+.+.|.||          .+.+..+...
T Consensus       136 ~pe~~~~g~SNVG-KSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~--~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~  212 (320)
T KOG2486|consen  136 RPELAFYGRSNVG-KSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG--KSWYEVDLPGYGRAGYGFELPADWDKFTKS  212 (320)
T ss_pred             CceeeeecCCccc-HHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc--ceEEEEecCCcccccCCccCcchHhHhHHH
Confidence            5678999999999 999999998776543333 355655555544434  3456899999          2234455566


Q ss_pred             eecCCc---EEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           73 SYRGAD---VFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        73 ~~~~~d---~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                      |+.+.+   -+.++.|.+-+ .-.+.....|+.   +  .++|+.+|.||+|....-...++.      ....++...+.
T Consensus       213 Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g---e--~~VP~t~vfTK~DK~k~~~~~~kK------p~~~i~~~f~~  281 (320)
T KOG2486|consen  213 YLLERENLVRVFLLVDASVPIQPTDNPEIAWLG---E--NNVPMTSVFTKCDKQKKVKRTGKK------PGLNIKINFQG  281 (320)
T ss_pred             HHHhhhhhheeeeeeeccCCCCCCChHHHHHHh---h--cCCCeEEeeehhhhhhhccccccC------ccccceeehhh
Confidence            665533   33344444432 222221124443   3  389999999999976433211111      11122221222


Q ss_pred             hC------CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          149 IG------ASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       149 ~~------~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +.      ..|++.+|+.++.|++.+.-.+.+.
T Consensus       282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ccccceeccCCceeeecccccCceeeeeehhhh
Confidence            11      1367789999999999887766543

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.65  E-value=1.1e-06  Score=66.37  Aligned_cols=152  Identities=16%  Similarity=0.194  Sum_probs=96.7

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCC------ccccc-cccceecC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ------EDYNR-LRPLSYRG   76 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~------~~~~~-~~~~~~~~   76 (207)
                      .+|+++|.|.|| ||||+..++..... ..|.-|.-.-..-.+..+|  -.+++.|.||-      -+-+. ..-...+.
T Consensus        63 aRValIGfPSVG-KStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   63 ARVALIGFPSVG-KSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             eEEEEecCCCcc-HHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence            579999999999 99999999876532 2343333222233444555  45789999982      12111 12234567


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHh-hcC---CC-------------------------------------------
Q 028595           77 ADVFVLAFSLVSRASYENVLKKWIPELQ-HYS---PG-------------------------------------------  109 (207)
Q Consensus        77 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~-~~~---~~-------------------------------------------  109 (207)
                      ||.++.|.|.+..+.-..+...=++... +.+   |+                                           
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            9999999999987666644332222221 111   11                                           


Q ss_pred             -------------------CcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHH
Q 028595          110 -------------------VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD  170 (207)
Q Consensus       110 -------------------~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  170 (207)
                                         +|++-|-||+|.               ++.++...+++..+-   +-+|+..+-|++.+++
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~lle  281 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDRLLE  281 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHHHHH
Confidence                               233344444443               577888888877654   6788888999999999


Q ss_pred             HHHHHHh
Q 028595          171 AAIKVVI  177 (207)
Q Consensus       171 ~i~~~~~  177 (207)
                      .+-+.+.
T Consensus       282 ~iWe~l~  288 (364)
T KOG1486|consen  282 RIWEELN  288 (364)
T ss_pred             HHHHHhc
Confidence            9888775

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=3e-07  Score=74.42  Aligned_cols=151  Identities=13%  Similarity=0.080  Sum_probs=98.4

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCce---eeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTV---FDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~---~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      |+..|.-..| ||||+..+.+..-..  .|..   |.+... -...+-....+.+.|.||++++-+..-.-+...|.+++
T Consensus         3 i~t~GhidHg-kT~L~~altg~~~d~--l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           3 IGTAGHIDHG-KTTLLKALTGGVTDR--LPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             EEEeeeeecc-chhhhhhhccccccc--chhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            5667888889 999999998775321  1111   111111 11222233478999999999875544444557899999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH--hCCcEEEEe
Q 028595           83 AFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIEC  157 (207)
Q Consensus        83 v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~e~  157 (207)
                      |.+.++   .++.+.+  ..+.++    .-...++|.||+|..+...           ..+..++....  +...+++.+
T Consensus        80 vV~~deGl~~qtgEhL--~iLdll----gi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~  142 (447)
T COG3276          80 VVAADEGLMAQTGEHL--LILDLL----GIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKT  142 (447)
T ss_pred             EEeCccCcchhhHHHH--HHHHhc----CCCceEEEEeccccccHHH-----------HHHHHHHHHhhccccccccccc
Confidence            999964   4555554  233443    1344699999999976542           22222333222  334578999


Q ss_pred             ccCCCCCHHHHHHHHHHHHh
Q 028595          158 SSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      |+++|+||+++-..|....-
T Consensus       143 s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         143 SAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             ccccCCCHHHHHHHHHHhhh
Confidence            99999999999999998874

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.63  E-value=2.1e-07  Score=66.61  Aligned_cols=83  Identities=17%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595           78 DVFVLAFSLVSRASYENVLKKWI-PELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  156 (207)
Q Consensus        78 d~~i~v~d~~~~~s~~~~~~~~~-~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  156 (207)
                      |++++|+|++++.+....  .+. ..+..  .+.|+++|.||+|+.+..+           ..+....+.+..+ ...+.
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii~   64 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPFK   64 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEEE
Confidence            789999999988666543  222 22222  4799999999999854321           1111122333333 36789


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +||.++.|++++.+.+.+..
T Consensus        65 vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          65 ISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             EeccCCcChhhHHHHHHHHh
Confidence            99999999999999987764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.61  E-value=1.1e-07  Score=75.43  Aligned_cols=105  Identities=17%  Similarity=0.114  Sum_probs=64.5

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  131 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~  131 (207)
                      .+.+.|.||+|.-...   ...+..+|.++++-+..   +-+++ ..+...+    .+.|.+++.||+|+.+....    
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l----~~~~~ivv~NK~Dl~~~~~~----  190 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGL----MEIADIYVVNKADGEGATNV----  190 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHH----hhhccEEEEEcccccchhHH----
Confidence            4788899999843211   22456678888885433   33443 2233323    25778999999998754321    


Q ss_pred             CCCcccCH--H----HHHHHHHH-hCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          132 PGLVPVTT--A----QGEELRKQ-IGA-SYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       132 ~~~~~v~~--~----~~~~~~~~-~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                            ..  .    ....+.+. .++ .+++.+||+++.|++++++++.+...
T Consensus       191 ------~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       191 ------TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             ------HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                  10  0    01111111 122 26899999999999999999988643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01856 YlqF YlqF

Probab=98.61  E-value=2.8e-07  Score=67.06  Aligned_cols=89  Identities=20%  Similarity=0.126  Sum_probs=60.8

Q ss_pred             ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      ....++++|++++|+|++++....+.  .+...+    .+.|.++|.||+|+.+..            ......++.+..
T Consensus        13 ~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~------------~~~~~~~~~~~~   74 (171)
T cd01856          13 IKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPK------------KTKKWLKYFESK   74 (171)
T ss_pred             HHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChH------------HHHHHHHHHHhc
Confidence            35567889999999999876554332  222222    357999999999985332            111222222333


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      +. .++.+||+++.|++++...+...+.
T Consensus        75 ~~-~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          75 GE-KVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CC-eEEEEECCCcccHHHHHHHHHHHHH
Confidence            33 6789999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.60  E-value=7.3e-08  Score=82.09  Aligned_cols=117  Identities=12%  Similarity=0.070  Sum_probs=71.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCC-cc-ccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc-------c---c
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSI-WD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-------L---R   70 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~---~   70 (207)
                      ...+|+++|.+++| |||++|+|++.... .. ..+.+..........+|  ..+.++||||-.....       +   .
T Consensus       117 fslrIvLVGKTGVG-KSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       117 FSLNILVLGKSGVG-KSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             cceEEEEECCCCCC-HHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            34689999999999 99999999988632 22 12222222222333455  5689999999554211       1   1


Q ss_pred             cceec--CCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcC-C--CCcEEEEeeCCCcccC
Q 028595           71 PLSYR--GADVFVLAFSLVSRAS-YENVLKKWIPELQHYS-P--GVPVVLVGTKLDLRED  124 (207)
Q Consensus        71 ~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~-~--~~piivv~nK~D~~~~  124 (207)
                      ..++.  ..|++|+|..++.... .++  ..++..|.+.. +  -..+||+.|+.|..+.
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD--~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSND--LPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHH--HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            22333  4799999998763322 122  23444444333 1  2568999999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.60  E-value=1.2e-07  Score=66.82  Aligned_cols=78  Identities=14%  Similarity=0.092  Sum_probs=53.9

Q ss_pred             ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595           72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  151 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  151 (207)
                      ..+.++|++++|+|++++.+..+.  .+...+....++.|+++|+||+|+.+..            ......++.+..+.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~   72 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI   72 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC
Confidence            456789999999999988765531  3333333222578999999999985432            22344555666665


Q ss_pred             cEEEEeccCCCCC
Q 028595          152 SYYIECSSKTQQN  164 (207)
Q Consensus       152 ~~~~e~Sa~~~~~  164 (207)
                       .++.+||.++.+
T Consensus        73 -~ii~iSa~~~~~   84 (141)
T cd01857          73 -VVVFFSALKENA   84 (141)
T ss_pred             -eEEEEEecCCCc
Confidence             889999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=2.4e-07  Score=72.23  Aligned_cols=166  Identities=15%  Similarity=0.138  Sum_probs=102.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC---cc----------ccCce-------e--eeeee--EEEECC----eEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI---WD----------YIPTV-------F--DNFSA--NVVAEG----TTVNL   55 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~---~~----------~~~t~-------~--~~~~~--~~~~~~----~~~~l   55 (207)
                      ..+|.++|--..| ||||...|.+---.   ++          |..+.       .  ..|..  .....|    ---.+
T Consensus        10 ~vNIG~vGHVdHG-KtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257          10 EVNIGMVGHVDHG-KTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             ceEeeeeeecccc-hhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            5689999999999 99999998753211   10          11000       0  00100  001011    12357


Q ss_pred             EEEeCCCCccccccccceecCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595           56 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  131 (207)
Q Consensus        56 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~  131 (207)
                      .+.|.||+|-.-..--.=..-.|+.++|.+.+.+    ++-+++.  -++.+    .-..++++-||+|+...+..+   
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~--AleIi----gik~iiIvQNKIDlV~~E~Al---  159 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM--ALEII----GIKNIIIVQNKIDLVSRERAL---  159 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH--HHhhh----ccceEEEEecccceecHHHHH---
Confidence            8999999986432111112235999999999864    4445441  12222    135699999999997654310   


Q ss_pred             CCCcccCHHHHHHHHHHh--CCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchh
Q 028595          132 PGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK  184 (207)
Q Consensus       132 ~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~  184 (207)
                           ...+++++|.+.-  ...|.+.+||..+.||+-+++.|.+.+..+..+..
T Consensus       160 -----E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~  209 (415)
T COG5257         160 -----ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLD  209 (415)
T ss_pred             -----HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCC
Confidence                 1344555555532  12489999999999999999999999988766543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.57  E-value=4e-07  Score=71.37  Aligned_cols=91  Identities=20%  Similarity=0.114  Sum_probs=62.7

Q ss_pred             ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      ....+..+|++++|.|+.++.+..+.  .+...+    .+.|+++|.||+|+.+..            ......++.+..
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~------------~~~~~~~~~~~~   76 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA------------VTKQWLKYFEEK   76 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH------------HHHHHHHHHHHc
Confidence            34567789999999999887555432  233333    368999999999985332            112222222334


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +. +.+.+||.++.|++++.+.+.+.+...
T Consensus        77 ~~-~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        77 GI-KALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CC-eEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            54 788999999999999999988877543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=8.2e-08  Score=81.03  Aligned_cols=114  Identities=17%  Similarity=0.153  Sum_probs=81.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCcc---------ccCce------eeee-ee--EEEE---CCeEEEEEEEeCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWD---------YIPTV------FDNF-SA--NVVA---EGTTVNLGLWDTA   61 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~---------~~~t~------~~~~-~~--~~~~---~~~~~~l~i~D~~   61 (207)
                      ...+|.++|.-..| ||+|+..|.......-         |..+.      |... ..  .+..   .++.+-+++.|||
T Consensus       127 ~irnV~l~GhLhhG-KT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  127 RIRNVGLVGHLHHG-KTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             eEEEEEEeeccccC-hhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            45789999999999 9999999987654321         11111      1111 01  1111   4678999999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCc
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL  121 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~  121 (207)
                      |+-.+-.-....++-+|++++++|+.+.-.++.-  ..+...-+  ...|+++|.||.|.
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~ikhaiq--~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RIIKHAIQ--NRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHH--HHHHHHHh--ccCcEEEEEehhHH
Confidence            9998877777778889999999999988777753  34333332  37999999999995

>smart00053 DYNc Dynamin, GTPase

Probab=98.56  E-value=1.5e-07  Score=71.92  Aligned_cols=69  Identities=20%  Similarity=0.171  Sum_probs=45.0

Q ss_pred             EEEEEEeCCCCcc-------------ccccccceecC-CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeC
Q 028595           53 VNLGLWDTAGQED-------------YNRLRPLSYRG-ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK  118 (207)
Q Consensus        53 ~~l~i~D~~G~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK  118 (207)
                      ..+.++||||-..             ...+...|+++ .+++++|.|.+..-.-.+. ..+...+..  ...|.++|.||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEEC
Confidence            5678999999632             12345677774 5699999987653222222 233334433  37899999999


Q ss_pred             CCcccC
Q 028595          119 LDLRED  124 (207)
Q Consensus       119 ~D~~~~  124 (207)
                      .|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998654

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.56  E-value=4.9e-07  Score=72.06  Aligned_cols=132  Identities=18%  Similarity=0.267  Sum_probs=86.8

Q ss_pred             EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHH------HHHHHHHHhhcC-----CCCcEE
Q 028595           45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV------LKKWIPELQHYS-----PGVPVV  113 (207)
Q Consensus        45 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~------~~~~~~~i~~~~-----~~~pii  113 (207)
                      .+.+.+  ..+.++|+|||...+..|-+++.+++++|||.++++.+....-      +.+-+.++...+     .+.+++
T Consensus       189 ~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsii  266 (354)
T KOG0082|consen  189 EFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSII  266 (354)
T ss_pred             EEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEE
Confidence            344444  7788999999999999999999999999999999864332111      122233332222     579999


Q ss_pred             EEeeCCCcccCcc-------cccCCCCCcccCHHHHHHHHHH-----hC----CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          114 LVGTKLDLREDKH-------YLADHPGLVPVTTAQGEELRKQ-----IG----ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       114 vv~nK~D~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~-----~~----~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      +++||.|+-++.-       .+.+-.+.  -..+++..+.+.     +.    -..++.+.|.+..+|+.+|..+...+.
T Consensus       267 LFLNK~DLFeEKi~~~~~~~~Fpdy~G~--~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii  344 (354)
T KOG0082|consen  267 LFLNKKDLFEEKIKKVPLTDCFPDYKGV--NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTII  344 (354)
T ss_pred             EEeecHHHHHHHhccCchhhhCcCCCCC--CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHH
Confidence            9999999864322       12222222  133444443332     11    113556899999999999999999887


Q ss_pred             CCC
Q 028595          178 KPP  180 (207)
Q Consensus       178 ~~~  180 (207)
                      ...
T Consensus       345 ~~n  347 (354)
T KOG0082|consen  345 QNN  347 (354)
T ss_pred             HHH
Confidence            654

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=7.3e-07  Score=66.93  Aligned_cols=166  Identities=14%  Similarity=0.192  Sum_probs=97.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEEC---CeEEEEEEEeCCCCcccc-c--cccceecCCc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAE---GTTVNLGLWDTAGQEDYN-R--LRPLSYRGAD   78 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~i~D~~G~~~~~-~--~~~~~~~~~d   78 (207)
                      ..|+++|-..+| ||++-.-...+- .+  ..|...+.+..+..+   +.-+.+.+||.|||-.+- .  -....++++-
T Consensus        28 p~ilLMG~rRsG-KsSI~KVVFhkM-sP--neTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g  103 (347)
T KOG3887|consen   28 PRILLMGLRRSG-KSSIQKVVFHKM-SP--NETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG  103 (347)
T ss_pred             ceEEEEeecccC-cchhhheeeecc-CC--CceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence            459999999999 999876554321 11  112211111122222   234778999999986542 2  2356788999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHH---hhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC----
Q 028595           79 VFVLAFSLVSRASYENVLKKWIPEL---QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA----  151 (207)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~~i---~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----  151 (207)
                      +.|+|.|..+  .+.+++..+...+   .+.+|++.+=+..+|.|-..+...+.   ..+.+...-...++ ..|.    
T Consensus       104 ALifvIDaQd--dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie---tqrdI~qr~~d~l~-d~gle~v~  177 (347)
T KOG3887|consen  104 ALIFVIDAQD--DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE---TQRDIHQRTNDELA-DAGLEKVQ  177 (347)
T ss_pred             eEEEEEechH--HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhh---hHHHHHHHhhHHHH-hhhhccce
Confidence            9999999765  3333324443333   33447888989999999543322100   01111111112222 2222    


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          152 SYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       152 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ..|+.+|..+ ++|-|+|..+++.++++-+
T Consensus       178 vsf~LTSIyD-HSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  178 VSFYLTSIYD-HSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             EEEEEeeecc-hHHHHHHHHHHHHHhhhch
Confidence            2566777765 8999999999999987754

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=5.7e-07  Score=78.16  Aligned_cols=118  Identities=17%  Similarity=0.083  Sum_probs=83.6

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCC--CCc--cc------cCce------eeee-eeEEEECCe-EEEEEEEeCCCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRS--SIW--DY------IPTV------FDNF-SANVVAEGT-TVNLGLWDTAGQ   63 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~--~~~--~~------~~t~------~~~~-~~~~~~~~~-~~~l~i~D~~G~   63 (207)
                      +...+|.+++.-.+| ||||..+++...  +..  +.      ....      |.+. +..+...-+ .+.++++||||+
T Consensus         8 ~~~RNigI~aHidaG-KTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           8 ERIRNIGIVAHIDAG-KTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             ccceEEEEEeccCCC-hHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            346799999999999 999999986321  111  00      0000      1111 111222222 588999999999


Q ss_pred             ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           64 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      -+|.......++-.|++++|+|....-..+.- ..|.+....   ++|.+++.||.|....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~---~vp~i~fiNKmDR~~a  143 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKY---GVPRILFVNKMDRLGA  143 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhc---CCCeEEEEECcccccc
Confidence            99999999999999999999999987666654 456555433   8999999999997654

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.47  E-value=1.1e-06  Score=66.00  Aligned_cols=162  Identities=12%  Similarity=0.009  Sum_probs=88.2

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCc---------cccCceeeee-eeEEEECCeEEEEEEEeCCCCccc-----
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIW---------DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY-----   66 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~---------~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~-----   66 (207)
                      .+.++|+++|.++.| ||||+|.+.......         .+..|+.... ...+.-+|...++.++||||.-+.     
T Consensus        44 GF~FNIMVVgqSglg-kstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLG-KSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             cCceEEEEEecCCCC-chhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            457899999999999 999999987554332         1222222111 223444677889999999992211     


Q ss_pred             ---------------------cccccceecCC--cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           67 ---------------------NRLRPLSYRGA--DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        67 ---------------------~~~~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                                           ...++..+.+.  +++++....+- .++.-+...+++.+.+   -+.++-|..|+|...
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~---vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE---VVNVVPVIAKADTLT  198 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh---hheeeeeEeeccccc
Confidence                                 11223444444  45555544432 3333332344444433   455676778999642


Q ss_pred             CcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          124 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      -++.        ..-.+.+++-...+++ .++.--+.+-..=+..+..-++..+
T Consensus       199 leEr--------~~FkqrI~~el~~~~i-~vYPq~~fded~ed~~lN~kvR~~i  243 (336)
T KOG1547|consen  199 LEER--------SAFKQRIRKELEKHGI-DVYPQDSFDEDLEDKTLNDKVRESI  243 (336)
T ss_pred             HHHH--------HHHHHHHHHHHHhcCc-ccccccccccchhHHHHHHHHHhhC
Confidence            2110        0133445555566676 6666555443333444444444443

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=5.1e-06  Score=66.25  Aligned_cols=188  Identities=13%  Similarity=0.080  Sum_probs=108.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcccc-----------------------Cceeee-eeeEEEE----------C
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYI-----------------------PTVFDN-FSANVVA----------E   49 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~-----------------------~t~~~~-~~~~~~~----------~   49 (207)
                      ..+++++|+..+| ||||+--|+.+..+...-                       .+.|-+ ..+.+..          +
T Consensus       167 evRvAVlGg~D~G-KSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  167 EVRVAVLGGCDVG-KSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             EEEEEEecCcccC-cceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            5689999999999 999999998776543100                       001100 0001111          1


Q ss_pred             CeEEEEEEEeCCCCccccccccceecC--CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595           50 GTTVNLGLWDTAGQEDYNRLRPLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  127 (207)
Q Consensus        50 ~~~~~l~i~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~  127 (207)
                      ...--+.++|.+|+.+|....-+-+.+  .|..++|.++...-....  .+.+..+...  ++|+.++.+|.|+......
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhH
Confidence            223467899999999986654444432  578888888776444332  3444454443  8999999999999865321


Q ss_pred             ---------ccCCCC----Ccc-cCHHHHHHHHHH---hCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccC
Q 028595          128 ---------LADHPG----LVP-VTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQ  190 (207)
Q Consensus       128 ---------~~~~~~----~~~-v~~~~~~~~~~~---~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~  190 (207)
                               +-..++    +.- -+..++-..++.   -++.|.|-+|+.+|+++.-+- .++..+...-..++..+--+
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~-~fLn~Lsp~~~~~e~~~L~q  400 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR-TFLNCLSPAGTAEERIQLVQ  400 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH-HHHhhcCCcCChHHHHHHhc
Confidence                     001111    111 122333333333   245688999999999986443 33344433333333334445


Q ss_pred             CCeEEee
Q 028595          191 RGCLLNV  197 (207)
Q Consensus       191 ~~c~~~~  197 (207)
                      ..|.+.+
T Consensus       401 ~~~eFqv  407 (591)
T KOG1143|consen  401 LPAEFQV  407 (591)
T ss_pred             CcceeeH
Confidence            5565543

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.46  E-value=1.1e-07  Score=66.90  Aligned_cols=53  Identities=11%  Similarity=0.049  Sum_probs=37.3

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCcee-eeeeeEEEECCeEEEEEEEeCCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQ   63 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~   63 (207)
                      +++++|.+++| ||||+|++.+...... ..+.+ ......+.+++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vG-Kstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVG-KSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            78999999999 9999999998875422 22222 22233455554   4689999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.45  E-value=1e-06  Score=69.51  Aligned_cols=90  Identities=22%  Similarity=0.170  Sum_probs=62.5

Q ss_pred             ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      ....+..+|++++|.|..++.+....  .+...+    .+.|+++|.||+|+.+..            ..+...++.+..
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~------------~~~~~~~~~~~~   79 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPE------------VTKKWIEYFEEQ   79 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHH------------HHHHHHHHHHHc
Confidence            34567789999999999887654432  233333    268999999999985321            112222333344


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +. +++.+||.++.|++++.+.+...+..
T Consensus        80 ~~-~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         80 GI-KALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             CC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            54 78899999999999999998877644

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.45  E-value=2.9e-07  Score=71.81  Aligned_cols=57  Identities=9%  Similarity=0.032  Sum_probs=40.7

Q ss_pred             CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH-hCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-IGASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       109 ~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      ..+-++|.||+|+.+....          ..+...+..+. ....+.+++||++|+|++++.++|..+
T Consensus       230 ~~ADIVVLNKiDLl~~~~~----------dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNF----------DVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHH----------HHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999753211          33334444443 334589999999999999999999764

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.40  E-value=5.4e-06  Score=68.18  Aligned_cols=124  Identities=19%  Similarity=0.270  Sum_probs=80.6

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCc
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLDL  121 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~  121 (207)
                      ..+.++|++|+...+..|.+++.+++++|||.++++-          ..+.+.+..|-....... .+.|++|++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            5679999999999999999999999999999998742          223343333333333322 58999999999997


Q ss_pred             ccCcc--------cccCCCCCcccCHHHHHHHHHHh-----------CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595          122 REDKH--------YLADHPGLVPVTTAQGEELRKQI-----------GASYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       122 ~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      -...-        .+.+..+..+-..+.+..|....           ....++.++|.+..++..+|..+.+.+
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            43211        11111122112445555544432           111455799999999999999887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=1.8e-06  Score=70.00  Aligned_cols=132  Identities=14%  Similarity=0.084  Sum_probs=90.3

Q ss_pred             cceeEEEEecccccceeeeeeecc--CCCCCc--------cccCc----------eeeee-eeEEEECCeEEEEEEEeCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVS--GRSSIW--------DYIPT----------VFDNF-SANVVAEGTTVNLGLWDTA   61 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~--~~~~~~--------~~~~t----------~~~~~-~~~~~~~~~~~~l~i~D~~   61 (207)
                      .+...+||--+.+| ||||-..++  ++-+..        ....+          -|... +..+..+.....++|.|||
T Consensus        11 rRRTFAIISHPDAG-KTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          11 RRRTFAIISHPDAG-KTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhcceeEEecCCCC-cccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            45678899999999 999988875  222110        00011          12223 3344556667889999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ  141 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~  141 (207)
                      |+++|..-....+..+|.++.|.|+...-.-+.+  ++.+..+-  .++|++-+.||.|.....            ..+.
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrl--R~iPI~TFiNKlDR~~rd------------P~EL  153 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRL--RDIPIFTFINKLDREGRD------------PLEL  153 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhh--cCCceEEEeeccccccCC------------hHHH
Confidence            9999987777778889999999998875544443  33333322  489999999999976543            5566


Q ss_pred             HHHHHHHhCC
Q 028595          142 GEELRKQIGA  151 (207)
Q Consensus       142 ~~~~~~~~~~  151 (207)
                      ..+..+.+++
T Consensus       154 LdEiE~~L~i  163 (528)
T COG4108         154 LDEIEEELGI  163 (528)
T ss_pred             HHHHHHHhCc
Confidence            6666666664

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=1e-05  Score=64.66  Aligned_cols=83  Identities=12%  Similarity=0.018  Sum_probs=54.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEE------------C----CeEEEEEEEeCCC----
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVA------------E----GTTVNLGLWDTAG----   62 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~------------~----~~~~~l~i~D~~G----   62 (207)
                      ..++.++|-|||| ||||.|.++...-. ..|+-++-+.-.-.+.+            .    -....+.++|++|    
T Consensus         2 ~l~~GIVGlPNVG-KSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           2 SLKIGIVGLPNVG-KSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             CceeEEecCCCCc-HHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            4689999999999 99999999977632 23332221111111111            1    1246789999876    


Q ss_pred             Ccccccccccee---cCCcEEEEEEeCC
Q 028595           63 QEDYNRLRPLSY---RGADVFVLAFSLV   87 (207)
Q Consensus        63 ~~~~~~~~~~~~---~~~d~~i~v~d~~   87 (207)
                      ...-+.+-+.|+   +.+|+++.|.+..
T Consensus        81 As~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          81 ASKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             cccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            445566666665   5699999999876

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.34  E-value=2.3e-05  Score=62.82  Aligned_cols=163  Identities=17%  Similarity=0.038  Sum_probs=95.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCc----------e--ee--eeeeE-EEE-CC------------------
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPT----------V--FD--NFSAN-VVA-EG------------------   50 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t----------~--~~--~~~~~-~~~-~~------------------   50 (207)
                      ..|...|.-..| ||||+-.|..++.++..-.|          +  |.  ..+.. +-. +|                  
T Consensus       118 v~Vg~aGhVdhG-KSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv  196 (527)
T COG5258         118 VLVGVAGHVDHG-KSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV  196 (527)
T ss_pred             EEEEEeccccCC-cceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence            467889999999 99999999977755421111          1  10  11111 000 11                  


Q ss_pred             --eEEEEEEEeCCCCccccc--cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595           51 --TTVNLGLWDTAGQEDYNR--LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH  126 (207)
Q Consensus        51 --~~~~l~i~D~~G~~~~~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~  126 (207)
                        ..--+.+.||.|+|.|..  +....-+..|-.+++..+++.-+-..  ++.+.....  -+.|++++.||+|+.++..
T Consensus       197 ~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a--~~lPviVvvTK~D~~~ddr  272 (527)
T COG5258         197 KRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALA--MELPVIVVVTKIDMVPDDR  272 (527)
T ss_pred             hhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhh--hcCCEEEEEEecccCcHHH
Confidence              123467999999998854  34455667899999999888554433  233333222  1899999999999976543


Q ss_pred             ccc----------C-CCCCccc-CHHHHH--HHHHHh--CCcEEEEeccCCCCCHHHHHHHH
Q 028595          127 YLA----------D-HPGLVPV-TTAQGE--ELRKQI--GASYYIECSSKTQQNVKAVFDAA  172 (207)
Q Consensus       127 ~~~----------~-~~~~~~v-~~~~~~--~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i  172 (207)
                      .-+          - ...+..+ +..++.  ..+-+.  +..|.|.+|+.+|+|++-+.+.+
T Consensus       273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            100          0 0000000 111111  111111  24689999999999987655444

>cd01859 MJ1464 MJ1464

Probab=98.29  E-value=6.2e-07  Score=64.20  Aligned_cols=54  Identities=17%  Similarity=0.078  Sum_probs=39.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEE-EECCeEEEEEEEeCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANV-VAEGTTVNLGLWDTAG   62 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~i~D~~G   62 (207)
                      ..+++++|.+++| ||||+|++.+.. ...+.++.+.+...++ ..++   .+.+|||||
T Consensus       101 ~~~~~~ig~~~~G-kssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         101 EGKVGVVGYPNVG-KSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            4689999999999 999999999765 3445566665544332 2332   588999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.28  E-value=7.4e-06  Score=65.15  Aligned_cols=119  Identities=15%  Similarity=0.191  Sum_probs=70.8

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCcc----------ccCceeeee-eeEEEECCeEEEEEEEeCCCCccc----
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWD----------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY----   66 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~----------~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~----   66 (207)
                      ...+.|+++|.++.| ||||+|.|++......          ..|++.... ...+.-+|..+.+.++||||.-.+    
T Consensus        21 Gi~f~im~~G~sG~G-KttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs   99 (373)
T COG5019          21 GIDFTIMVVGESGLG-KTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS   99 (373)
T ss_pred             CCceEEEEecCCCCc-hhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence            457899999999999 9999999998754332          223333222 223444678899999999992111    


Q ss_pred             ---------------------cccccc-eecC--CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           67 ---------------------NRLRPL-SYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        67 ---------------------~~~~~~-~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                                           ....+. -+.+  ++++++....+. ..+..+.-.....+.+   -+.+|-|..|+|.-
T Consensus       100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~l  175 (373)
T COG5019         100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK---RVNLIPVIAKADTL  175 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc---ccCeeeeeeccccC
Confidence                                 011111 2443  456666555432 2333332244444443   56677777999975


Q ss_pred             cCc
Q 028595          123 EDK  125 (207)
Q Consensus       123 ~~~  125 (207)
                      ..+
T Consensus       176 T~~  178 (373)
T COG5019         176 TDD  178 (373)
T ss_pred             CHH
Confidence            443

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.28  E-value=1e-06  Score=68.83  Aligned_cols=147  Identities=15%  Similarity=0.064  Sum_probs=90.9

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccc--cCceeeeeeeEEEECCeEEEEEEEeCCCCccc--cccc------cceec
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLR------PLSYR   75 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~------~~~~~   75 (207)
                      -|.++|-.|+| |||||+.|++..+.+..  -.|...+ ........ .-.+.+.||.|.-.-  -.+.      -....
T Consensus       180 viavVGYTNaG-KsTLikaLT~Aal~p~drLFATLDpT-~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLeeVa  256 (410)
T KOG0410|consen  180 VIAVVGYTNAG-KSTLIKALTKAALYPNDRLFATLDPT-LHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLEEVA  256 (410)
T ss_pred             eEEEEeecCcc-HHHHHHHHHhhhcCccchhheeccch-hhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHHHHh
Confidence            47899999999 99999999965543321  1111111 11122222 234678999883221  1111      12345


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC----CcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-PG----VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~----~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      .+|.++-|.|+++|+.-+.. ..-+..+.... +.    ..++=|-||+|..+....                  .+.++
T Consensus       257 eadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e------------------~E~n~  317 (410)
T KOG0410|consen  257 EADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE------------------EEKNL  317 (410)
T ss_pred             hcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc------------------cccCC
Confidence            68999999999998766655 34444554432 22    234667888887554321                  12232


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                         -+.+||++|+|++++...+-....
T Consensus       318 ---~v~isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  318 ---DVGISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             ---ccccccccCccHHHHHHHHHHHhh
Confidence               478999999999999988876665

>PRK13796 GTPase YqeH; Provisional

Probab=98.27  E-value=5.6e-06  Score=67.43  Aligned_cols=84  Identities=23%  Similarity=0.383  Sum_probs=57.9

Q ss_pred             cCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH----HHHHHh
Q 028595           75 RGAD-VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE----ELRKQI  149 (207)
Q Consensus        75 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~  149 (207)
                      ..++ .+++|.|+.+...      .|...+.+...+.|+++|+||+|+.+...           ..+.+.    .+++.+
T Consensus        67 ~~~~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~~-----------~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         67 GDSDALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKSV-----------KKNKVKNWLRQEAKEL  129 (365)
T ss_pred             cccCcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCcc-----------CHHHHHHHHHHHHHhc
Confidence            3344 9999999987431      23334444334789999999999965321           333333    345556


Q ss_pred             CCc--EEEEeccCCCCCHHHHHHHHHHH
Q 028595          150 GAS--YYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       150 ~~~--~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      |+.  .++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            652  57899999999999999999764

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=2.2e-05  Score=65.74  Aligned_cols=155  Identities=14%  Similarity=0.030  Sum_probs=91.7

Q ss_pred             eeEEEEecccccceeeeeeeccCC--CCCc----------------------cccCce-----eeee-eeEEEECCeEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR--SSIW----------------------DYIPTV-----FDNF-SANVVAEGTTVN   54 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~--~~~~----------------------~~~~t~-----~~~~-~~~~~~~~~~~~   54 (207)
                      ...+++|.-.+| ||||+-+++..  .+..                      ....|-     |.+. .....++.....
T Consensus       178 l~lvv~GhVdaG-KSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~  256 (603)
T KOG0458|consen  178 LNLVVLGHVDAG-KSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKI  256 (603)
T ss_pred             eEEEEEeccccc-hhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCcee
Confidence            467899999999 99999987622  1111                      011111     1112 223344455678


Q ss_pred             EEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHH-H-----HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc
Q 028595           55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-V-----LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL  128 (207)
Q Consensus        55 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~-----~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~  128 (207)
                      +.|.|.||+..|....-.-...+|+.++|.|++-.+ |+. +     .......++... --.++|+.||.|+.+-.+- 
T Consensus       257 ~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~-  333 (603)
T KOG0458|consen  257 VTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQD-  333 (603)
T ss_pred             EEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHH-
Confidence            899999998887664444455689999999987421 110 0     122222333221 3458999999999764321 


Q ss_pred             cCCCCCcccCHHHHHHHH-HHhCC----cEEEEeccCCCCCHHHH
Q 028595          129 ADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVKAV  168 (207)
Q Consensus       129 ~~~~~~~~v~~~~~~~~~-~~~~~----~~~~e~Sa~~~~~i~~~  168 (207)
                           ...........|. +..|+    ..|+++|+.+|+|+...
T Consensus       334 -----RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  334 -----RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             -----HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence                 0001222344455 44443    26999999999998765

>PRK01889 GTPase RsgA; Reviewed

Probab=98.22  E-value=8.8e-06  Score=66.04  Aligned_cols=85  Identities=20%  Similarity=0.181  Sum_probs=60.1

Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  152 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  152 (207)
                      ...++|.+++|.++...-+..-+ ..++..+...  ++|.+||+||+|+.+....          ..+....+  ..++ 
T Consensus       109 iaANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~~~----------~~~~~~~~--~~g~-  172 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDAEE----------KIAEVEAL--APGV-  172 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCHHH----------HHHHHHHh--CCCC-
Confidence            46899999999999754444444 6777666653  7888999999999654210          11222222  3455 


Q ss_pred             EEEEeccCCCCCHHHHHHHHH
Q 028595          153 YYIECSSKTQQNVKAVFDAAI  173 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~  173 (207)
                      +.+.+|+.++.|++++..++-
T Consensus       173 ~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        173 PVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             cEEEEECCCCccHHHHHHHhh
Confidence            889999999999999888874

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.17  E-value=1.7e-06  Score=63.00  Aligned_cols=54  Identities=15%  Similarity=-0.024  Sum_probs=36.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G   62 (207)
                      ..+++++|.+++| ||||+|++.+..... ..+..|.+.. ..+.++.   .+.++||||
T Consensus       117 ~~~~~~vG~pnvG-KSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVG-KSSLINSLKRSRACN-VGATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCC-HHHHHHHHhCcccce-ecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            3689999999999 999999999876422 1222333332 2333332   478999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=7e-06  Score=63.48  Aligned_cols=167  Identities=16%  Similarity=0.165  Sum_probs=97.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCC---CC---Cccc-----cCc---eeeeeee-EEEECCeEEEEEEEeCCCCccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR---SS---IWDY-----IPT---VFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~---~~---~~~~-----~~t---~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      ..+|..+|--..| ||||-..++.-   ..   ...|     .|.   -|.+... -+...-.+-..--.|+||+.+|-.
T Consensus        12 hVNigtiGHvdHG-KTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK   90 (394)
T COG0050          12 HVNVGTIGHVDHG-KTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK   90 (394)
T ss_pred             eeEEEEeccccCc-hhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence            3689999999999 99998776511   10   0011     111   1111111 111111223345789999998743


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      .--.-....|+.|+|.++++...-+.....++  .++.  ++| ++++.||+|+.++++.+.       .-..+.+.+..
T Consensus        91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiLl--arqv--Gvp~ivvflnK~Dmvdd~elle-------lVemEvreLLs  159 (394)
T COG0050          91 NMITGAAQMDGAILVVAATDGPMPQTREHILL--ARQV--GVPYIVVFLNKVDMVDDEELLE-------LVEMEVRELLS  159 (394)
T ss_pred             HHhhhHHhcCccEEEEEcCCCCCCcchhhhhh--hhhc--CCcEEEEEEecccccCcHHHHH-------HHHHHHHHHHH
Confidence            22222334799999999998654444311122  2221  554 578899999988665311       13356788888


Q ss_pred             HhCCc----EEEEeccCCC--------CCHHHHHHHHHHHHhCCCcc
Q 028595          148 QIGAS----YYIECSSKTQ--------QNVKAVFDAAIKVVIKPPQK  182 (207)
Q Consensus       148 ~~~~~----~~~e~Sa~~~--------~~i~~~f~~i~~~~~~~~~~  182 (207)
                      .|++.    |.+.-||+.-        ..|.++++.+-..+..++..
T Consensus       160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~  206 (394)
T COG0050         160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD  206 (394)
T ss_pred             HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence            88863    5666676632        23567777776666666543

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=2.4e-06  Score=67.95  Aligned_cols=116  Identities=16%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCcc---ccCceeeeeeeEEE------ECCeE------------------------
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWD---YIPTVFDNFSANVV------AEGTT------------------------   52 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~---~~~t~~~~~~~~~~------~~~~~------------------------   52 (207)
                      -|+++|.-..| |||+|+-|+...+...   ..||. +.|...+.      ++|..                        
T Consensus        60 mill~GqyStG-KTtfi~yLle~dypg~riGpEPTt-d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   60 MILLVGQYSTG-KTTFIRYLLEQDYPGLRIGPEPTT-DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             eEEEEeccccc-hhHHHHHHHhCCCCccccCCCCCc-ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            35566655555 9999999998887632   22332 22222111      11111                        


Q ss_pred             ---------EEEEEEeCCCCc-----------cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE
Q 028595           53 ---------VNLGLWDTAGQE-----------DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV  112 (207)
Q Consensus        53 ---------~~l~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi  112 (207)
                               -.+.|.||||--           .|.....=|...+|.+|++||.-..+-..+. ...+..+...  +-.+
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki  214 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI  214 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence                     356799999921           1223334456789999999998877666666 4555555443  4558


Q ss_pred             EEEeeCCCcccCcc
Q 028595          113 VLVGTKLDLREDKH  126 (207)
Q Consensus       113 ivv~nK~D~~~~~~  126 (207)
                      -||+||+|..+.++
T Consensus       215 RVVLNKADqVdtqq  228 (532)
T KOG1954|consen  215 RVVLNKADQVDTQQ  228 (532)
T ss_pred             EEEeccccccCHHH
Confidence            89999999876544

>cd01858 NGP_1 NGP-1

Probab=98.14  E-value=2.3e-06  Score=61.38  Aligned_cols=54  Identities=9%  Similarity=-0.037  Sum_probs=34.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G   62 (207)
                      ...|+++|.+|+| ||||+|++.+..... ..++.|.+... .+..++   .+.+.||||
T Consensus       102 ~~~v~~~G~~nvG-KStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         102 QISVGFIGYPNVG-KSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             ceEEEEEeCCCCC-hHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            3568899999999 999999999875422 12222322222 222222   257999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.14  E-value=1.7e-06  Score=62.98  Aligned_cols=54  Identities=11%  Similarity=-0.044  Sum_probs=37.7

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ   63 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~   63 (207)
                      .+++++|.+++| ||||+|++.+..+. ...+..+.+... .+.++   ..+.+|||||-
T Consensus       116 ~~~~~~G~~~vG-Kstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         116 IRAMVVGIPNVG-KSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             eEEEEECCCCCC-HHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            589999999999 99999999987753 222333333322 34443   34789999993

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.08  E-value=4.2e-05  Score=59.84  Aligned_cols=98  Identities=19%  Similarity=0.184  Sum_probs=74.5

Q ss_pred             cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH
Q 028595           65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  144 (207)
Q Consensus        65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~  144 (207)
                      +...+.+--..+.|-.++|+++.+|+--..++..++-..+..  ++..+|+.||+|+.++...          ..++...
T Consensus        68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~----------~~~~~~~  135 (301)
T COG1162          68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEA----------AVKELLR  135 (301)
T ss_pred             ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHH----------HHHHHHH
Confidence            444555566667888888898888876666667887777664  7888889999999877642          2245666


Q ss_pred             HHHHhCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          145 LRKQIGASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       145 ~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      ....+|+ +.+.+|++++.+++++...+...
T Consensus       136 ~y~~~gy-~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         136 EYEDIGY-PVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             HHHhCCe-eEEEecCcCcccHHHHHHHhcCC
Confidence            7777888 89999999999999998877544

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=4.8e-05  Score=60.94  Aligned_cols=143  Identities=13%  Similarity=0.060  Sum_probs=82.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcc---------ccCceeeee-eeEEEECCeEEEEEEEeCCCCccc-------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD---------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY-------   66 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~---------~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~-------   66 (207)
                      .+.++++|.++.| ||||+|+|+...+...         ...|..... ...+.-+|..+.|++.||||.-+.       
T Consensus        21 ~ftlmvvG~sGlG-KsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   21 DFTLMVVGESGLG-KSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             ceEEEEecCCCcc-HHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            4789999999999 9999999987754322         111222222 123333678899999999992110       


Q ss_pred             ------------------cccccceec--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595           67 ------------------NRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH  126 (207)
Q Consensus        67 ------------------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~  126 (207)
                                        ..+.+..+.  .++++++....+.. .+..+.-.+...+.   ..+++|-|..|+|.....+
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh---ccccccceeeccccCCHHH
Confidence                              112233444  45677776665542 12222123344443   3677777789999765443


Q ss_pred             cccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595          127 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus       127 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      .        ......+.+-...+++ +.|.....
T Consensus       176 l--------~~~K~~I~~~i~~~nI-~vf~fp~~  200 (366)
T KOG2655|consen  176 L--------NQFKKRIRQDIEEHNI-KVFDFPTD  200 (366)
T ss_pred             H--------HHHHHHHHHHHHHcCc-ceecCCCC
Confidence            1        0133445556666676 55544433

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.04  E-value=0.00015  Score=58.16  Aligned_cols=154  Identities=18%  Similarity=0.081  Sum_probs=86.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc------------------cccCceeeee-------------------eeEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW------------------DYIPTVFDNF-------------------SANV   46 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~------------------~~~~t~~~~~-------------------~~~~   46 (207)
                      ..+|+++|+-.+| ||||+--|+.+.++.                  .-.+.+|.+.                   ...+
T Consensus       133 E~RVAVVGNVDAG-KSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  133 EARVAVVGNVDAG-KSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eEEEEEEecccCC-cceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            5689999999999 999999887665432                  0111122111                   0011


Q ss_pred             EE-CCeEEEEEEEeCCCCcccccccc--ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           47 VA-EGTTVNLGLWDTAGQEDYNRLRP--LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        47 ~~-~~~~~~l~i~D~~G~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      .+ .+..-.+.++|.+|+|+|....-  +.-.-.|...++.-.+-.- .-.. ++.+.+.-..  .+|+.+|.+|+|.++
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmT-KEHLgLALaL--~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMT-KEHLGLALAL--HVPVFVVVTKIDMCP  287 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eecc-HHhhhhhhhh--cCcEEEEEEeeccCc
Confidence            11 11234578999999999865332  2222356666666543211 1111 2222222211  799999999999987


Q ss_pred             CcccccCCCCCcccCHHHHHHHHHHhCC-------------------------cEEEEeccCCCCCHHHHHH
Q 028595          124 DKHYLADHPGLVPVTTAQGEELRKQIGA-------------------------SYYIECSSKTQQNVKAVFD  170 (207)
Q Consensus       124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~e~Sa~~~~~i~~~f~  170 (207)
                      .+..        +.+......+.+..|+                         .|+|.+|..+|.|++-+-.
T Consensus       288 ANiL--------qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm  351 (641)
T KOG0463|consen  288 ANIL--------QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM  351 (641)
T ss_pred             HHHH--------HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence            6531        0022233333333222                         3688999999999875433

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.01  E-value=4.8e-06  Score=65.29  Aligned_cols=55  Identities=13%  Similarity=-0.055  Sum_probs=37.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ   63 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~   63 (207)
                      ..+++++|.+++| ||||+|++.+.+.... .+..|.+. ...+.++.   .+.++||||-
T Consensus       118 ~~~~~~vG~~nvG-KSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       118 PIRAMIVGIPNVG-KSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CeEEEEECCCCCC-HHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            3679999999999 9999999997764322 22223222 22333332   4689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=2.6e-05  Score=66.53  Aligned_cols=118  Identities=14%  Similarity=0.060  Sum_probs=74.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcc-ccCceeee-----------------------------------------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD-YIPTVFDN-----------------------------------------   41 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~-~~~t~~~~-----------------------------------------   41 (207)
                      ..||++.|+.+.| |||++|..+-.++.++ .-|++...                                         
T Consensus       109 ~mKV~ifGrts~G-KSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  109 HMKVAIFGRTSAG-KSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             ccEEEEeCCCCCc-HHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            3599999999999 9999999886665432 11221100                                         


Q ss_pred             --eeeEEEECCe-----EEEEEEEeCCCCc---cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc
Q 028595           42 --FSANVVAEGT-----TVNLGLWDTAGQE---DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP  111 (207)
Q Consensus        42 --~~~~~~~~~~-----~~~l~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p  111 (207)
                        -...+..+..     .-.+.+.|.||-+   ...+-...+..++|++|+|.+..+.....+-  .++....+.  ++.
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CCc
Confidence              0001111111     0134577888843   3344556677889999999999997777764  555454443  455


Q ss_pred             EEEEeeCCCcccCcc
Q 028595          112 VVLVGTKLDLREDKH  126 (207)
Q Consensus       112 iivv~nK~D~~~~~~  126 (207)
                      +.|+-||+|...+..
T Consensus       264 iFIlnnkwDasase~  278 (749)
T KOG0448|consen  264 IFILNNKWDASASEP  278 (749)
T ss_pred             EEEEechhhhhcccH
Confidence            778888989876543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.97  E-value=7.6e-06  Score=64.53  Aligned_cols=56  Identities=13%  Similarity=-0.064  Sum_probs=38.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE   64 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~   64 (207)
                      ..+++++|.++|| ||||+|++.+.+... ..+..|.+... .+.+++   .+.++||||--
T Consensus       121 ~~~~~~~G~pnvG-KSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        121 AIRAMIIGIPNVG-KSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            3589999999999 999999999876422 12233333322 333333   36799999963

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.94  E-value=5.8e-06  Score=66.16  Aligned_cols=55  Identities=11%  Similarity=-0.008  Sum_probs=39.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ   63 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~   63 (207)
                      ..++.++|-+||| ||||||+|.+.+.. ...+..|.+... .+.++..   +.|+||||-
T Consensus       132 ~~~v~vvG~PNVG-KSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         132 KIRVGVVGYPNVG-KSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             ceEEEEEcCCCCc-HHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            3679999999999 99999999998853 333333555533 4444442   789999994

>cd01855 YqeH YqeH

Probab=97.91  E-value=4.7e-06  Score=61.66  Aligned_cols=54  Identities=15%  Similarity=0.065  Sum_probs=34.7

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCc-------cccCceeeee-eeEEEECCeEEEEEEEeCCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIW-------DYIPTVFDNF-SANVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~-------~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G   62 (207)
                      ..++++|.+|+| ||||+|++.+.....       ...+..|.+. ...+.++.   .+.++||||
T Consensus       128 ~~~~~~G~~nvG-KStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVG-KSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCC-HHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            578999999999 999999999754311       1111112222 22333332   468999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=2.3e-05  Score=67.52  Aligned_cols=113  Identities=13%  Similarity=0.071  Sum_probs=78.2

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC--CCcc------cc------Cceeeee-eeEEEECCeEEEEEEEeCCCCcccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS--SIWD------YI------PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN   67 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~~~~------~~------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~   67 (207)
                      ...++|++.--..| ||||+.+|...+  +...      +.      .+-|.+. +..+..-.+.+.++++|.||+-+|.
T Consensus         8 ~irn~~~vahvdhg-ktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    8 GIRNICLVAHVDHG-KTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             ceeEEEEEEEecCC-ccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            45689999999999 999999987433  1111      11      1112222 1123333356889999999999999


Q ss_pred             ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCC
Q 028595           68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD  120 (207)
Q Consensus        68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D  120 (207)
                      +.......-+|+++.+.|+...-..+.. ..+.+...   .+...++|.||+|
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~---~~~~~~lvinkid  135 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI---EGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH---ccCceEEEEehhh
Confidence            9999999999999999999876555544 22222221   3677899999999

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.84  E-value=5.8e-05  Score=58.73  Aligned_cols=103  Identities=15%  Similarity=0.148  Sum_probs=64.9

Q ss_pred             EEEEEEEeCCC--CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc
Q 028595           52 TVNLGLWDTAG--QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA  129 (207)
Q Consensus        52 ~~~l~i~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~  129 (207)
                      .+.+.|..|.|  |..     -....-+|.+++|.-..-.+..+-+..-.+ +       +-=++|.||.|....+..  
T Consensus       143 G~DvIIVETVGvGQse-----v~I~~~aDt~~~v~~pg~GD~~Q~iK~Gim-E-------iaDi~vINKaD~~~A~~a--  207 (323)
T COG1703         143 GYDVIIVETVGVGQSE-----VDIANMADTFLVVMIPGAGDDLQGIKAGIM-E-------IADIIVINKADRKGAEKA--  207 (323)
T ss_pred             CCCEEEEEecCCCcch-----hHHhhhcceEEEEecCCCCcHHHHHHhhhh-h-------hhheeeEeccChhhHHHH--
Confidence            37778888866  433     223445899999988777777776632222 2       223788999996554321  


Q ss_pred             CCCCCcccCHHH--HHHHH----HHhCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          130 DHPGLVPVTTAQ--GEELR----KQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       130 ~~~~~~~v~~~~--~~~~~----~~~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                              ..+.  +..+.    ...++ ++.+.+||.+|+|++++++.+.+...
T Consensus       208 --------~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         208 --------ARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             --------HHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence                    1111  11111    11121 47889999999999999999987664

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.82  E-value=0.00098  Score=54.55  Aligned_cols=156  Identities=13%  Similarity=0.167  Sum_probs=95.4

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCc---------------------cccCceeeee----eeEEEE-CCeEEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIW---------------------DYIPTVFDNF----SANVVA-EGTTVNLGLW   58 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~---------------------~~~~t~~~~~----~~~~~~-~~~~~~l~i~   58 (207)
                      ++|.++|+-..| |||||.||...-..+                     ...-|...-|    ...+.+ ++-.+.+.+.
T Consensus        18 IYiGVVGPVRTG-KSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   18 IYIGVVGPVRTG-KSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             eEEEeecCcccC-chhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            689999999999 999999997432211                     0111111111    113344 4668999999


Q ss_pred             eCCC--------C-----------cccccc----------ccceecC-C-cEEEEEEeCC----ChhhHHHHHHHHHHHH
Q 028595           59 DTAG--------Q-----------EDYNRL----------RPLSYRG-A-DVFVLAFSLV----SRASYENVLKKWIPEL  103 (207)
Q Consensus        59 D~~G--------~-----------~~~~~~----------~~~~~~~-~-d~~i~v~d~~----~~~s~~~~~~~~~~~i  103 (207)
                      |+.|        .           ++|..-          .+..++. + =++++.-|-+    .++++.++.....+++
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            9876        1           111110          0111222 1 2333333332    4788888877778888


Q ss_pred             hhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC--CCCCHHHHHHHHHHHH
Q 028595          104 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK--TQQNVKAVFDAAIKVV  176 (207)
Q Consensus       104 ~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~--~~~~i~~~f~~i~~~~  176 (207)
                      ...  ++|+++++|-.+= ...+           +.+.+.++.++|+. +.+.+++.  +.++|..+++.++...
T Consensus       177 k~i--gKPFvillNs~~P-~s~e-----------t~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vLyEF  236 (492)
T PF09547_consen  177 KEI--GKPFVILLNSTKP-YSEE-----------TQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVLYEF  236 (492)
T ss_pred             HHh--CCCEEEEEeCCCC-CCHH-----------HHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHHhcC
Confidence            775  8999999998763 2222           67788899999998 77776654  4455666666555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.80  E-value=1.1e-05  Score=61.62  Aligned_cols=101  Identities=14%  Similarity=0.105  Sum_probs=62.5

Q ss_pred             EEEEEEeCCC--CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC
Q 028595           53 VNLGLWDTAG--QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  130 (207)
Q Consensus        53 ~~l~i~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~  130 (207)
                      +.+.|.+|.|  |...     ....-+|.+++|....-.+..+-+..-.+ +       +.=++|.||.|....+.    
T Consensus       122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGim-E-------iaDi~vVNKaD~~gA~~----  184 (266)
T PF03308_consen  122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIM-E-------IADIFVVNKADRPGADR----  184 (266)
T ss_dssp             -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHH-H-------H-SEEEEE--SHHHHHH----
T ss_pred             CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhh-h-------hccEEEEeCCChHHHHH----
Confidence            6677888855  5442     23445899999998877666665522222 2       23378889999765543    


Q ss_pred             CCCCcccCHHHHHHHHHHhC------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          131 HPGLVPVTTAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       131 ~~~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                             ...+.+.......      .+|.+.+||.++.|++++++.+.+...
T Consensus       185 -------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  185 -------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             -------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence                   3344444433221      148999999999999999999886543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.79  E-value=9.1e-05  Score=56.49  Aligned_cols=84  Identities=15%  Similarity=0.175  Sum_probs=53.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECC----eEEEEEEEeCCCCc----ccccc---ccc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEG----TTVNLGLWDTAGQE----DYNRL---RPL   72 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~~~l~i~D~~G~~----~~~~~---~~~   72 (207)
                      .++.++|.+.+| |||++..+.+... .+.|.      ++..+.+.|    +.-++++.|.||--    +-+.-   .-.
T Consensus        60 a~vg~vgFPSvG-ksTl~~~l~g~~s~vasye------fttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia  132 (358)
T KOG1487|consen   60 ARVGFVGFPSVG-KSTLLSKLTGTFSEVAAYE------FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA  132 (358)
T ss_pred             eeeeEEecCccc-hhhhhhhhcCCCCcccccc------ceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE
Confidence            478999999999 9999999987642 12222      233333333    23578999999821    11111   222


Q ss_pred             eecCCcEEEEEEeCCChhhHHHH
Q 028595           73 SYRGADVFVLAFSLVSRASYENV   95 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~   95 (207)
                      ..+-+..+++|.|+..+-+-..+
T Consensus       133 vartcnli~~vld~~kp~~hk~~  155 (358)
T KOG1487|consen  133 VARTCNLIFIVLDVLKPLSHKKI  155 (358)
T ss_pred             EeecccEEEEEeeccCcccHHHH
Confidence            34568899999998775544433

>TIGR00092 GTP-binding protein YchF

Probab=97.76  E-value=4e-05  Score=62.00  Aligned_cols=82  Identities=11%  Similarity=-0.053  Sum_probs=55.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCC-C-ccccCceeeeeeeEEEECCe---------------EEEEEEEeCCCCcc--
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSS-I-WDYIPTVFDNFSANVVAEGT---------------TVNLGLWDTAGQED--   65 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~--   65 (207)
                      .|+.++|.+++| ||||.|.+++... . ..|..|+.......+.+.+.               ...+.+.|+||--.  
T Consensus         3 lk~GivGlPn~G-KSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVG-KSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCC-hHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            689999999999 9999999998875 3 23443333333333444331               24678999998433  


Q ss_pred             --cccccc---ceecCCcEEEEEEeCC
Q 028595           66 --YNRLRP---LSYRGADVFVLAFSLV   87 (207)
Q Consensus        66 --~~~~~~---~~~~~~d~~i~v~d~~   87 (207)
                        -..+..   ..++++|+++.|.+..
T Consensus        82 s~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence              222323   3467899999999975

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.73  E-value=2.8e-05  Score=55.60  Aligned_cols=53  Identities=13%  Similarity=0.066  Sum_probs=34.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc--cccCceeeeeeeEEEECCeEEEEEEEeCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTVFDNFSANVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G   62 (207)
                      ...++++|.+++| ||||+|.+.+.....  ....|...  ...+..+   ..+.++||||
T Consensus       100 ~~~~~~~G~~~~G-Kstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG  154 (155)
T cd01849         100 SITVGVIGYPNVG-KSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             CcEEEEEccCCCC-HHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence            3568999999999 999999999865321  11222211  1222222   3478999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=0.00058  Score=57.88  Aligned_cols=116  Identities=15%  Similarity=0.045  Sum_probs=77.5

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCC--CC--cc--ccCce----------eeee-eeEEEECCeEEEEEEEeCCCCc
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRS--SI--WD--YIPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQE   64 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~--~~--~~--~~~t~----------~~~~-~~~~~~~~~~~~l~i~D~~G~~   64 (207)
                      +...+|.++.--.+| |||+-.+.+...  ..  .+  ...++          |.+. +......-..+.++|+||||+-
T Consensus        37 ~k~RNIgi~Ahidsg-KTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv  115 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAG-KTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV  115 (721)
T ss_pred             hhhcccceEEEEecC-CceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence            345677888888889 999998876332  11  00  00111          1111 1111122236889999999999


Q ss_pred             cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      +|.--.+..++--|++++|.+....-..+.. ..|.++- ++  ++|.+...||.|.-
T Consensus       116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~-ry--~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  116 DFTFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMK-RY--NVPRICFINKMDRM  169 (721)
T ss_pred             eEEEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHH-hc--CCCeEEEEehhhhc
Confidence            9988889999999999999998766555544 5666553 33  89999999999964

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.65  E-value=0.00011  Score=57.30  Aligned_cols=115  Identities=15%  Similarity=0.145  Sum_probs=72.8

Q ss_pred             EEEEEeCCCCccccccccceecCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc
Q 028595           54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA  129 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~  129 (207)
                      .+.+.|+||++..-+.--.-..-.|+++++...+.    +++.+++ .  .-++.+   =..++++-||+|+..+.+.. 
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL-a--aveiM~---LkhiiilQNKiDli~e~~A~-  198 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL-A--AVEIMK---LKHIIILQNKIDLIKESQAL-  198 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH-H--HHHHhh---hceEEEEechhhhhhHHHHH-
Confidence            45788999987643211111222477777776553    4555544 1  112222   36799999999997665410 


Q ss_pred             CCCCCcccCHHHHHHHHHHhC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 028595          130 DHPGLVPVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK  182 (207)
Q Consensus       130 ~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~  182 (207)
                             ...++++.|.+.-.  ..|.+.+||.-+.||+-+.+.++.++.-+..+
T Consensus       199 -------eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd  246 (466)
T KOG0466|consen  199 -------EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD  246 (466)
T ss_pred             -------HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence                   02344555554321  24899999999999999999999999876543

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.00074  Score=51.37  Aligned_cols=170  Identities=14%  Similarity=0.131  Sum_probs=98.6

Q ss_pred             CccceeEEEEecccc--cceeeeeeeccCCCCCccccCceeeeeeeEEEECCeE----EEEEEEeCCCCcccccccccee
Q 028595            1 MELLAKLACLFATQV--TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTT----VNLGLWDTAGQEDYNRLRPLSY   74 (207)
Q Consensus         1 m~~~~ki~iiG~~~~--GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~l~i~D~~G~~~~~~~~~~~~   74 (207)
                      |+-+-=+++.|.++|  | |.+|++++....+..+....-...+. --.++.+.    +.+.|.-. ..+.+... ....
T Consensus         1 ~~~rp~~lv~g~sgvfsg-~~~ll~rl~s~dfed~ses~~~te~h-gwtid~kyysadi~lcishi-cde~~lpn-~~~a   76 (418)
T KOG4273|consen    1 AAGRPCALVTGCSGVFSG-DQLLLHRLGSEDFEDESESNDATEFH-GWTIDNKYYSADINLCISHI-CDEKFLPN-AEIA   76 (418)
T ss_pred             CCCCceEEEecccccccc-hHHHHHHhcchhheeeccccCceeee-ceEecceeeecceeEEeecc-cchhccCC-cccc
Confidence            444556788999998  8 99999999877765543333222221 11223322    22332221 11222111 1122


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc-------c-------------------c
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-------Y-------------------L  128 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~-------~-------------------~  128 (207)
                      .-..+++.|||++....+..+ ..|+.--.-+.-+ -.+.+|||.|..+..-       .                   +
T Consensus        77 ~pl~a~vmvfdlse~s~l~al-qdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgi  154 (418)
T KOG4273|consen   77 EPLQAFVMVFDLSEKSGLDAL-QDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGI  154 (418)
T ss_pred             cceeeEEEEEeccchhhhHHH-Hhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccc
Confidence            335799999999999999888 7887532211112 2467899999764211       0                   0


Q ss_pred             cCCC--------CCcccCHHHHHHHHHHhCCcEEEEeccCC------------CCCHHHHHHHHHHHHh
Q 028595          129 ADHP--------GLVPVTTAQGEELRKQIGASYYIECSSKT------------QQNVKAVFDAAIKVVI  177 (207)
Q Consensus       129 ~~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~------------~~~i~~~f~~i~~~~~  177 (207)
                      .+..        ...-.....+.+||.++|+ .|++.+|.+            .+|++.+|..+-...-
T Consensus       155 setegssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  155 SETEGSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             cccccccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence            0000        0111234568899999998 999988853            3688999988866543

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.63  E-value=7.2e-05  Score=56.87  Aligned_cols=88  Identities=13%  Similarity=-0.056  Sum_probs=51.7

Q ss_pred             eeEEEEecccccceeeeeeeccCC--CCCcc--ccCc-eeeeeeeEEEECCeEEEEEEEeCCCCccccc------cccce
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR--SSIWD--YIPT-VFDNFSANVVAEGTTVNLGLWDTAGQEDYNR------LRPLS   73 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~--~~~~~--~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~   73 (207)
                      .-|+++|.+++| ||+|+|++.+.  .+...  ..++ .|..........+....+.+.||+|......      .....
T Consensus         8 ~vvsv~G~~~sG-KS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~   86 (224)
T cd01851           8 AVVSVFGPQSSG-KSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA   86 (224)
T ss_pred             EEEEEECCCCCC-HHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence            357899999999 99999999988  55322  1122 2322222111123457899999999654322      11122


Q ss_pred             ecC--CcEEEEEEeCCChhhHH
Q 028595           74 YRG--ADVFVLAFSLVSRASYE   93 (207)
Q Consensus        74 ~~~--~d~~i~v~d~~~~~s~~   93 (207)
                      +..  ++.+|+..+....+...
T Consensus        87 l~~llss~~i~n~~~~~~~~~~  108 (224)
T cd01851          87 LATLLSSVLIYNSWETILGDDL  108 (224)
T ss_pred             HHHHHhCEEEEeccCcccHHHH
Confidence            223  67787777766544333

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK12289 GTPase RsgA; Reviewed

Probab=97.53  E-value=5.5e-05  Score=61.19  Aligned_cols=55  Identities=9%  Similarity=-0.099  Sum_probs=33.5

Q ss_pred             EEEEecccccceeeeeeeccCCCCCc-cccCce------eeeeeeEEEECCeEEEEEEEeCCCCcc
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIW-DYIPTV------FDNFSANVVAEGTTVNLGLWDTAGQED   65 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~~   65 (207)
                      ++++|.++|| ||||||+|.+..-.. ...+..      +.+....+.+++..   .|+||||-..
T Consensus       175 ~v~iG~SgVG-KSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVG-KSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCC-HHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            6999999999 999999999764221 111110      11122333343222   5899999754

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.50  E-value=0.0012  Score=46.89  Aligned_cols=146  Identities=16%  Similarity=0.190  Sum_probs=83.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCC-CCccccc-------------
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTA-GQEDYNR-------------   68 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~-G~~~~~~-------------   68 (207)
                      ...||.+-|.+++| |||++.++.+.-  ...--+++-.+...+.-+|+.+-+.+.|+. |.+-+.+             
T Consensus         4 ~~mki~ITG~PGvG-KtTl~~ki~e~L--~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVG-KTTLVLKIAEKL--REKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCcc-HHHHHHHHHHHH--HhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            36799999999999 999999986332  111134555667777788888889999987 3221100             


Q ss_pred             ------------cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCc
Q 028595           69 ------------LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLV  135 (207)
Q Consensus        69 ------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~  135 (207)
                                  ..+..++.||++|+  |=--+-.+.  ...+...++... .+.|++.+.++.+..+-           
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElk--s~~f~~~ve~vl~~~kpliatlHrrsr~P~-----------  145 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVIII--DEIGPMELK--SKKFREAVEEVLKSGKPLIATLHRRSRHPL-----------  145 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhc--cHHHHHHHHHHhcCCCcEEEEEecccCChH-----------
Confidence                        11233344565543  322121111  234444444433 47888888776654211           


Q ss_pred             ccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       136 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                            .+++ +..+. -++.   .+.+|-+.++..++..+-
T Consensus       146 ------v~~i-k~~~~-v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         146 ------VQRI-KKLGG-VYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             ------HHHh-hhcCC-EEEE---EccchhhHHHHHHHHHhc
Confidence                  1222 33333 2222   566777788888887664

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.46  E-value=0.00052  Score=63.99  Aligned_cols=112  Identities=18%  Similarity=0.058  Sum_probs=63.0

Q ss_pred             EEEEecccccceeeeeeeccCCCCCcc------ccCceeeeeeeEEEECCeEEEEEEEeCCCCc--------cccccccc
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWD------YIPTVFDNFSANVVAEGTTVNLGLWDTAGQE--------DYNRLRPL   72 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~   72 (207)
                      .++||.+++| |||+|++- +-.+.-.      ....++.+..-...+.++.   .++||+|..        .....|..
T Consensus       114 YlviG~~gsG-Ktt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSG-KTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCc-hhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCE---EEEcCCCccccCCCcccccHHHHHH
Confidence            4799999999 99999886 3333211      0111121211122223323   489999822        12223443


Q ss_pred             ee---------cCCcEEEEEEeCCChh-----hHHHH---HHHHHHHHhhcC-CCCcEEEEeeCCCccc
Q 028595           73 SY---------RGADVFVLAFSLVSRA-----SYENV---LKKWIPELQHYS-PGVPVVLVGTKLDLRE  123 (207)
Q Consensus        73 ~~---------~~~d~~i~v~d~~~~~-----s~~~~---~~~~~~~i~~~~-~~~piivv~nK~D~~~  123 (207)
                      ++         +-.+++|+++|+.+.-     .....   ....+.++.+.. -..|+.|+.||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            33         3479999999987532     11111   123333443332 5899999999999753

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK12288 GTPase RsgA; Reviewed

Probab=97.44  E-value=9.5e-05  Score=59.76  Aligned_cols=56  Identities=9%  Similarity=-0.015  Sum_probs=34.3

Q ss_pred             EEEEecccccceeeeeeeccCCCCCc-cccCce------eeeeeeEEEECCeEEEEEEEeCCCCccc
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIW-DYIPTV------FDNFSANVVAEGTTVNLGLWDTAGQEDY   66 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~~~   66 (207)
                      ++++|.++|| ||||||+|.+..... ...+..      +.+....+.+++..   .|+||||-..+
T Consensus       208 ~~~vG~sgVG-KSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~  270 (347)
T PRK12288        208 SIFVGQSGVG-KSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF  270 (347)
T ss_pred             EEEECCCCCC-HHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence            6899999999 999999999775321 111110      11122233443222   48999997664

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.41  E-value=0.00066  Score=39.49  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=27.4

Q ss_pred             CcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEeeCCC
Q 028595           77 ADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLD  120 (207)
Q Consensus        77 ~d~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piivv~nK~D  120 (207)
                      .++++|++|.+...  +.++- ..++..++...++.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence            58999999999753  34443 355667776667999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.38  E-value=0.0001  Score=58.19  Aligned_cols=83  Identities=16%  Similarity=0.074  Sum_probs=53.9

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCce-eeeeeeEEEEC---------------CeEEEEEEEeCCCCc----
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTV-FDNFSANVVAE---------------GTTVNLGLWDTAGQE----   64 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~-~~~~~~~~~~~---------------~~~~~l~i~D~~G~~----   64 (207)
                      .|+.++|-++|| ||||.|.+++.......-|-. -+.-..++.+.               -....++++|++|.-    
T Consensus        21 lkiGIVGlPNvG-KST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs   99 (391)
T KOG1491|consen   21 LKIGIVGLPNVG-KSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS   99 (391)
T ss_pred             ceeeEeeCCCCc-hHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence            489999999999 999999999887543322222 12222233331               135789999998732    


Q ss_pred             cccccccce---ecCCcEEEEEEeCCC
Q 028595           65 DYNRLRPLS---YRGADVFVLAFSLVS   88 (207)
Q Consensus        65 ~~~~~~~~~---~~~~d~~i~v~d~~~   88 (207)
                      .-..+-+.|   ++.+|+++-|.+...
T Consensus       100 ~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen  100 AGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cCcCchHHHHHhhhhccceeEEEEecC
Confidence            333444433   567999999887553

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.35  E-value=0.00012  Score=59.64  Aligned_cols=56  Identities=13%  Similarity=0.031  Sum_probs=34.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC----ccccCceeeee-eeEEEECCeEEEEEEEeCCCCc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI----WDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE   64 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~----~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~   64 (207)
                      .++.++|.+||| ||||+|++++....    ....+..|.+. ...+.+++   .+.++||||-.
T Consensus       155 ~~v~~vG~~nvG-KStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVG-KSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCC-HHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence            379999999999 99999999875321    11111122222 22333322   24699999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.35  E-value=6.6e-05  Score=53.76  Aligned_cols=57  Identities=9%  Similarity=-0.078  Sum_probs=32.7

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCc--cc-----cCceeeeeeeEEEECCeEEEEEEEeCCCCccc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIW--DY-----IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY   66 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~--~~-----~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~   66 (207)
                      -++++|.++|| ||||+|.|.+.....  ..     ....+.+....+.+++..   .|+||||-..+
T Consensus        37 ~~vl~G~SGvG-KSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~  100 (161)
T PF03193_consen   37 TSVLLGQSGVG-KSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF  100 (161)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred             EEEEECCCCCC-HHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence            47899999999 999999999874211  00     001112233344443322   58999996554

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.34  E-value=0.0001  Score=56.83  Aligned_cols=23  Identities=4%  Similarity=-0.221  Sum_probs=20.6

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .++++|.++|| ||||||++.+..
T Consensus       122 ~~~~~G~sgvG-KStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVG-KSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCC-HHHHHHHHhhhh
Confidence            57899999999 999999999764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=97.34  E-value=0.00053  Score=52.49  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh-------HHHHHHHHHHHHhh-----cCCCCcEEEEeeCCC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-------YENVLKKWIPELQH-----YSPGVPVVLVGTKLD  120 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~i~~-----~~~~~piivv~nK~D  120 (207)
                      +.++.+|++||...+..|-+.+.++.++|||.+.++..-       -+-+ ..-++++..     +...+.+|+.+||.|
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL-~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRL-QEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHH-HHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            668999999999999999999999999999998775211       1111 122222221     114688999999999


Q ss_pred             ccc
Q 028595          121 LRE  123 (207)
Q Consensus       121 ~~~  123 (207)
                      +..
T Consensus       281 lla  283 (379)
T KOG0099|consen  281 LLA  283 (379)
T ss_pred             HHH
Confidence            743

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.33  E-value=0.00016  Score=58.67  Aligned_cols=117  Identities=16%  Similarity=0.046  Sum_probs=85.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC--C--Cc--cccCce----------eeee-eeEEEECCeEEEEEEEeCCCCcc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS--S--IW--DYIPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQED   65 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~--~~--~~~~t~----------~~~~-~~~~~~~~~~~~l~i~D~~G~~~   65 (207)
                      +..+|.++.--.+| |||.-.|++.-.  .  ..  +.-.|+          |.+. +..+..|=+.+.++++||||+-.
T Consensus        36 kirnigiiahidag-ktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd  114 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAG-KTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhcceeEEEecCC-CchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence            45688999999999 999988875221  0  00  111122          2222 33566676778999999999999


Q ss_pred             ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      |+-..+.+++--|+++.|||.+-.-..+.+ ..|.+.-.   -++|-..+.||.|....
T Consensus       115 f~leverclrvldgavav~dasagve~qtl-tvwrqadk---~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADK---FKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCccccee-eeehhccc---cCCchhhhhhhhhhhhh
Confidence            999899999999999999999987777777 67765432   27899999999997544

>PRK13796 GTPase YqeH; Provisional

Probab=97.31  E-value=0.00013  Score=59.53  Aligned_cols=56  Identities=11%  Similarity=-0.072  Sum_probs=34.4

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCc----cccCceeeee-eeEEEECCeEEEEEEEeCCCCc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIW----DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE   64 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~----~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~   64 (207)
                      .++.++|.+||| ||||+|+|.......    ...+..|.+. ...+.+++.   ..++||||-.
T Consensus       161 ~~v~vvG~~NvG-KSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVG-KSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCc-HHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            368999999999 999999998543111    0111112222 223444332   3699999964

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.00014  Score=55.41  Aligned_cols=86  Identities=13%  Similarity=0.086  Sum_probs=55.4

Q ss_pred             EEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCe--EEEEEEEeCCCCcccccccccee--cC--CcEEEE
Q 028595            9 CLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGT--TVNLGLWDTAGQEDYNRLRPLSY--RG--ADVFVL   82 (207)
Q Consensus         9 iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~--~~--~d~~i~   82 (207)
                      .||..+.||+|++|++...+. .....||...+|+.-....|.  .-..++|+.+|......+...-+  .+  .-.+|+
T Consensus        47 ~I~~~Gn~~~tt~I~~~FdR~-e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~slIL  125 (363)
T KOG3929|consen   47 FIGSKGNGGKTTIILRCFDRD-EPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTFSLIL  125 (363)
T ss_pred             EEEEecCCceeEeehhhcCcc-cCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhhhhee
Confidence            455555666999999998775 445667777777663333332  33457999999776554433222  22  347899


Q ss_pred             EEeCCChhhHHHH
Q 028595           83 AFSLVSRASYENV   95 (207)
Q Consensus        83 v~d~~~~~s~~~~   95 (207)
                      +.|+++++.+...
T Consensus       126 ~LDls~p~~~W~t  138 (363)
T KOG3929|consen  126 VLDLSKPNDLWPT  138 (363)
T ss_pred             eeecCChHHHHHH
Confidence            9999998766433

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.28  E-value=0.00058  Score=57.36  Aligned_cols=70  Identities=19%  Similarity=0.239  Sum_probs=46.0

Q ss_pred             EEEEEeCCCC-------------ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCC
Q 028595           54 NLGLWDTAGQ-------------EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKL  119 (207)
Q Consensus        54 ~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~  119 (207)
                      .+.+.|.||-             +..-++...|+.+..++|+|.--.+.+.-......+..   +.. .+.--|+|++|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVs---q~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVS---QMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHH---hcCCCCCeeEEEEeec
Confidence            3458899881             22345667899999999999865544444333233332   222 367789999999


Q ss_pred             CcccCcc
Q 028595          120 DLREDKH  126 (207)
Q Consensus       120 D~~~~~~  126 (207)
                      |+.+.+-
T Consensus       490 DlAEknl  496 (980)
T KOG0447|consen  490 DLAEKNV  496 (980)
T ss_pred             chhhhcc
Confidence            9987643

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.25  E-value=0.00015  Score=60.16  Aligned_cols=55  Identities=13%  Similarity=0.048  Sum_probs=40.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE   64 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~   64 (207)
                      ..|.+||-+||| |||+||.|.+.+-. +...|.|.+... ++.+..   .+.|.|+||.-
T Consensus       315 vtVG~VGYPNVG-KSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  315 VTVGFVGYPNVG-KSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eEEEeecCCCCc-hhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            578999999999 99999999999854 334566655433 344433   46899999953

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=97.22  E-value=0.0002  Score=53.78  Aligned_cols=128  Identities=17%  Similarity=0.250  Sum_probs=82.6

Q ss_pred             eEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh----------HHHHHHHHHHHHhhcC--CCCcEEEEeeC
Q 028595           51 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS----------YENVLKKWIPELQHYS--PGVPVVLVGTK  118 (207)
Q Consensus        51 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~i~~~~--~~~piivv~nK  118 (207)
                      .++.+.+.|++||...+..|-+++.++-.++++..++..+.          .++- ..+...|-.+.  .+.++++++||
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNK  275 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNK  275 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEech
Confidence            45778899999999999999999999988888877664322          2222 23333333332  47899999999


Q ss_pred             CCcccCccc-------ccCCCCCcccCHHHHHHHHHH----hCC-----cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          119 LDLREDKHY-------LADHPGLVPVTTAQGEELRKQ----IGA-----SYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       119 ~D~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~----~~~-----~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      .|+.++...       +.+-.++.. +.+.+++|.-+    ++.     ..-..++|.+.+||.-+|..+-..+++..
T Consensus       276 kDlLEekI~ySHl~~YFPe~~GP~q-Da~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  276 KDLLEEKILYSHLADYFPEFDGPKQ-DAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhhhHHHHHHhCcccCCCcc-cHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            998765431       112222222 33344444332    221     12235788888999999999988887653

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.0011  Score=56.10  Aligned_cols=111  Identities=17%  Similarity=0.068  Sum_probs=70.7

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +=++++|.++.| |||||+++...- .   ..|+....-....+.|+.-.+.+..+|.  ...+++. ..+-||.++++.
T Consensus        70 fIvavvGPpGtG-KsTLirSlVrr~-t---k~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDLVlLlI  141 (1077)
T COG5192          70 FIVAVVGPPGTG-KSTLIRSLVRRF-T---KQTIDEIRGPITVVSGKTRRITFLECPS--DLHQMID-VAKIADLVLLLI  141 (1077)
T ss_pred             eEEEeecCCCCC-hhHHHHHHHHHH-H---HhhhhccCCceEEeecceeEEEEEeChH--HHHHHHh-HHHhhheeEEEe
Confidence            346799999999 999999986442 1   1122111122334567788889999983  3333332 345689999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595           85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH  126 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~  126 (207)
                      |.+=.-..+.  -.+++.+... .-+-++-|++..|+.....
T Consensus       142 dgnfGfEMET--mEFLnil~~H-GmPrvlgV~ThlDlfk~~s  180 (1077)
T COG5192         142 DGNFGFEMET--MEFLNILISH-GMPRVLGVVTHLDLFKNPS  180 (1077)
T ss_pred             ccccCceehH--HHHHHHHhhc-CCCceEEEEeecccccChH
Confidence            9765433333  3566666543 1344678899999977654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.11  E-value=0.0014  Score=47.64  Aligned_cols=45  Identities=18%  Similarity=0.128  Sum_probs=29.8

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           78 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      |++++|.|+.++.+..+  ..+.+.+.-...+.|+++|.||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence            78999999988644432  2333332111136899999999999643

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.10  E-value=0.0018  Score=51.53  Aligned_cols=164  Identities=15%  Similarity=0.112  Sum_probs=89.6

Q ss_pred             eeEEEEecccccceeeeeeeccC----C---CC---Cc-cccCce---eeeeee-EEEECCeEEEEEEEeCCCCccccc-
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG----R---SS---IW-DYIPTV---FDNFSA-NVVAEGTTVNLGLWDTAGQEDYNR-   68 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~----~---~~---~~-~~~~t~---~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~-   68 (207)
                      .+|.-||--..| ||||-..++.    .   ++   .+ +..|..   |.+... -+...-..-..-=.|+||+.+|-. 
T Consensus        55 vNVGTIGHVDHG-KTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKN  133 (449)
T KOG0460|consen   55 VNVGTIGHVDHG-KTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKN  133 (449)
T ss_pred             ccccccccccCC-chhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHH
Confidence            467888999999 9999877651    1   11   10 011110   111100 011111111223579999988743 


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                      +... ....|+.|+|.+.+|..--+.-  +.+-+.++. -=..+++..||.|+.++.+.+.       .-.-+++++..+
T Consensus       134 MItG-aaqMDGaILVVaatDG~MPQTr--EHlLLArQV-GV~~ivvfiNKvD~V~d~e~le-------LVEmE~RElLse  202 (449)
T KOG0460|consen  134 MITG-AAQMDGAILVVAATDGPMPQTR--EHLLLARQV-GVKHIVVFINKVDLVDDPEMLE-------LVEMEIRELLSE  202 (449)
T ss_pred             hhcC-ccccCceEEEEEcCCCCCcchH--HHHHHHHHc-CCceEEEEEecccccCCHHHHH-------HHHHHHHHHHHH
Confidence            3322 3346999999999996544443  222222221 1245789999999986655311       123468888888


Q ss_pred             hCC----cEEEEec---cCCCC-------CHHHHHHHHHHHHhCCC
Q 028595          149 IGA----SYYIECS---SKTQQ-------NVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       149 ~~~----~~~~e~S---a~~~~-------~i~~~f~~i~~~~~~~~  180 (207)
                      +|+    .|.+.=|   |+.|.       .|.++++.+-..+..+.
T Consensus       203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~  248 (449)
T KOG0460|consen  203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE  248 (449)
T ss_pred             cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc
Confidence            875    3667644   44552       25555555555555443

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.04  E-value=0.0014  Score=50.68  Aligned_cols=59  Identities=12%  Similarity=0.043  Sum_probs=42.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccC----ceeeee-eeEEEECCeEEEEEEEeCCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIP----TVFDNF-SANVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~----t~~~~~-~~~~~~~~~~~~l~i~D~~G   62 (207)
                      +.++|+++|..+.| ||||+..|.+.++.....+    ++.... +..+.-.+....+.|.||.|
T Consensus        41 F~FNilCvGETg~G-KsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLG-KSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCcc-HHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            46899999999999 9999999999987654332    222111 22233345678889999988

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.03  E-value=0.00026  Score=55.87  Aligned_cols=58  Identities=12%  Similarity=-0.043  Sum_probs=35.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCcc-ccCc---ee---eeeeeEEEECCeEEEEEEEeCCCCccc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWD-YIPT---VF---DNFSANVVAEGTTVNLGLWDTAGQEDY   66 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~-~~~t---~~---~~~~~~~~~~~~~~~l~i~D~~G~~~~   66 (207)
                      ..++++|.+++| ||||+|.+.+...... ..+.   -|   ......+.+++.   ..++||||...+
T Consensus       162 k~~~~~G~sg~G-KSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVG-KSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCC-HHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            358999999999 9999999987653221 1110   01   111223333321   258999998664

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=96.97  E-value=0.0005  Score=54.58  Aligned_cols=23  Identities=4%  Similarity=-0.230  Sum_probs=20.4

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||+|.+.+..
T Consensus       166 ~~~~~G~sgvG-KStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVG-KSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCC-HHHHHHHHhCCc
Confidence            47899999999 999999998764

>PRK13695 putative NTPase; Provisional

Probab=96.94  E-value=0.0075  Score=43.83  Aligned_cols=21  Identities=19%  Similarity=0.091  Sum_probs=18.8

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ||++.|.+++| ||||+..+.+
T Consensus         2 ~i~ltG~~G~G-KTTll~~i~~   22 (174)
T PRK13695          2 KIGITGPPGVG-KTTLVLKIAE   22 (174)
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            78999999999 9999998653

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.90  E-value=0.00066  Score=53.24  Aligned_cols=56  Identities=11%  Similarity=-0.092  Sum_probs=33.7

Q ss_pred             EEEEecccccceeeeeeeccCCCCCc------cc-cCceeeeeeeEEEECCeEEEEEEEeCCCCccc
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIW------DY-IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY   66 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~------~~-~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~   66 (207)
                      .+++|.++|| ||||+|+|.......      .. .--.+.+...-+.+++..   .|.||||-..+
T Consensus       167 svl~GqSGVG-KSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~  229 (301)
T COG1162         167 TVLLGQSGVG-KSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL  229 (301)
T ss_pred             EEEECCCCCc-HHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence            5788999999 999999998643111      11 111122334444553222   58999997654

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.90  E-value=0.0056  Score=44.66  Aligned_cols=85  Identities=20%  Similarity=0.271  Sum_probs=59.3

Q ss_pred             eEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC
Q 028595           51 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  130 (207)
Q Consensus        51 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~  130 (207)
                      ..+.+.++|+|+....  .....+..+|.++++...+. .+...+ ..+++.+.+.  +.|+.+|.|+.|....      
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------  158 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------  158 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence            4678899999875432  23345678999999998774 455555 5666666554  5778999999986432      


Q ss_pred             CCCCcccCHHHHHHHHHHhCCcEEE
Q 028595          131 HPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus       131 ~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                             ...+++++++.+|. +++
T Consensus       159 -------~~~~~~~~~~~~~~-~vl  175 (179)
T cd03110         159 -------IAEEIEDYCEEEGI-PIL  175 (179)
T ss_pred             -------hHHHHHHHHHHcCC-CeE
Confidence                   34567788888887 543

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.77  E-value=0.0032  Score=50.44  Aligned_cols=95  Identities=11%  Similarity=0.068  Sum_probs=55.0

Q ss_pred             EEEEEEEeCCCCcccccc--------cc----ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCC
Q 028595           52 TVNLGLWDTAGQEDYNRL--------RP----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL  119 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~--------~~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~  119 (207)
                      .+.+.|+||||.......        ..    ..-...+..++|.|++...  +.+ .+ ...+.+.  -.+--+|.||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~-~~-a~~f~~~--~~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NAL-SQ-AKAFHEA--VGLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHH-HH-HHHHHhh--CCCCEEEEECC
Confidence            467899999996542211        10    1112367788999988532  222 11 1122111  13447899999


Q ss_pred             CcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHH
Q 028595          120 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF  169 (207)
Q Consensus       120 D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  169 (207)
                      |...              .-..+..++...+. |+..++  +|++++++-
T Consensus       270 D~t~--------------~~G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        270 DGTA--------------KGGVVFAIADELGI-PIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCC--------------CccHHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence            9532              23445666677787 777776  777776653

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.68  E-value=0.0045  Score=45.46  Aligned_cols=81  Identities=15%  Similarity=0.010  Sum_probs=53.8

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-CcEEEE
Q 028595           78 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIE  156 (207)
Q Consensus        78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e  156 (207)
                      +.-|+|.|++..+..-.   +-.+.+     ...=++|.||.|+.+.-..          +.+...+-+++.+ -.++++
T Consensus       119 ~~~v~VidvteGe~~P~---K~gP~i-----~~aDllVInK~DLa~~v~~----------dlevm~~da~~~np~~~ii~  180 (202)
T COG0378         119 HLRVVVIDVTEGEDIPR---KGGPGI-----FKADLLVINKTDLAPYVGA----------DLEVMARDAKEVNPEAPIIF  180 (202)
T ss_pred             ceEEEEEECCCCCCCcc---cCCCce-----eEeeEEEEehHHhHHHhCc----------cHHHHHHHHHHhCCCCCEEE
Confidence            47788888876443211   000000     0122789999999876553          5566666666553 358999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +|+++|+|+++++.++....
T Consensus       181 ~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         181 TNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EeCCCCcCHHHHHHHHHhhc
Confidence            99999999999999987654

>cd03112 CobW_like The function of this protein family is unkown

Probab=96.67  E-value=0.0019  Score=46.28  Aligned_cols=65  Identities=11%  Similarity=-0.004  Sum_probs=36.8

Q ss_pred             EEEEEEEeCCCCccccccccc--------eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCc
Q 028595           52 TVNLGLWDTAGQEDYNRLRPL--------SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL  121 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~  121 (207)
                      .....+.|++|-.........        ..-..|.++++.|..+-.........+..++..    . =+++.||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----a-d~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----A-DRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----C-CEEEEecccC
Confidence            356678999996533222211        223478999999976543322111333444432    1 2568899995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.65  E-value=0.0018  Score=50.71  Aligned_cols=95  Identities=12%  Similarity=0.046  Sum_probs=55.9

Q ss_pred             EEEEEEEeCCCCccccccc-----------c-ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCC
Q 028595           52 TVNLGLWDTAGQEDYNRLR-----------P-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL  119 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~-----------~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~  119 (207)
                      .+.+.|+||+|....+...           . ..-...|..++|.|.+..  .+.+ .. ...+.+.  -.+--+|.||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~-~~~f~~~--~~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQ-AKVFNEA--VGLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HH-HHHHHhh--CCCCEEEEEcc
Confidence            4788999999965432211           0 111237899999999753  2222 11 1222221  12457899999


Q ss_pred             CcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHH
Q 028595          120 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF  169 (207)
Q Consensus       120 D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  169 (207)
                      |....              ...+..+....+. |...++  +|++++++-
T Consensus       228 De~~~--------------~G~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAK--------------GGIILSIAYELKL-PIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCC--------------ccHHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence            97433              3345556667777 766666  777776653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14974 cell division protein FtsY; Provisional

Probab=96.54  E-value=0.0012  Score=53.10  Aligned_cols=95  Identities=14%  Similarity=0.084  Sum_probs=55.3

Q ss_pred             EEEEEEeCCCCccccc-cc---cce--ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595           53 VNLGLWDTAGQEDYNR-LR---PLS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH  126 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~  126 (207)
                      +.+.|+||+|...... +.   ...  ..+.|.+++|.|.+...........+...      -.+--+|.||.|....- 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~------~~~~giIlTKlD~~~~~-  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA------VGIDGVILTKVDADAKG-  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc------CCCCEEEEeeecCCCCc-
Confidence            5689999999654221 11   111  12468899999987644322221222221      12346889999975432 


Q ss_pred             cccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHH
Q 028595          127 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD  170 (207)
Q Consensus       127 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  170 (207)
                                   ..+-..+...+. |+..++  +|++++++..
T Consensus       296 -------------G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        296 -------------GAALSIAYVIGK-PILFLG--VGQGYDDLIP  323 (336)
T ss_pred             -------------cHHHHHHHHHCc-CEEEEe--CCCChhhccc
Confidence                         334555556676 666666  7888877643

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.54  E-value=0.0022  Score=53.22  Aligned_cols=65  Identities=14%  Similarity=0.040  Sum_probs=37.4

Q ss_pred             EEEEEEEeCCCCcccccc-cc---c--eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           52 TVNLGLWDTAGQEDYNRL-RP---L--SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~-~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      .+.+.|+||+|....+.. ..   .  ...+.+-+++|.|.+-.....+.    ...+.+.  -.+--+|.||.|..
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~  252 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGH  252 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCC
Confidence            478899999995543211 11   1  12246889999998765333322    2222221  23456788888864

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=96.47  E-value=0.0073  Score=42.26  Aligned_cols=65  Identities=12%  Similarity=0.011  Sum_probs=44.8

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCc
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL  121 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~  121 (207)
                      +.+.++|+|+...  ......+..+|.++++.+.+ ..++..+ ...++.+.+.....++.++.|+.+.
T Consensus        45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDA-YALIKKLAKQLRVLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            7789999987532  23356788899999999975 4455544 3445555443345678899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.16  E-value=0.0062  Score=48.88  Aligned_cols=94  Identities=24%  Similarity=0.173  Sum_probs=60.0

Q ss_pred             eCCCC-ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCccc
Q 028595           59 DTAGQ-EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV  137 (207)
Q Consensus        59 D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v  137 (207)
                      +.+|+ ..+.......+..+|+++-|.|+.++.+...-      .+.+...+.|.++|+||+|+.+...           
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~~-----------   78 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKEV-----------   78 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHHH-----------
Confidence            33554 34555667778889999999999999877664      2233333566799999999975531           


Q ss_pred             CHHHHHHHHHHh-CCcEEEEeccCCCCCHHHHHHH
Q 028595          138 TTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDA  171 (207)
Q Consensus       138 ~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~  171 (207)
                       .++..++.... +. ..+.+++..+.+...+...
T Consensus        79 -~~~W~~~~~~~~~~-~~~~v~~~~~~~~~~i~~~  111 (322)
T COG1161          79 -TKKWKKYFKKEEGI-KPIFVSAKSRQGGKKIRKA  111 (322)
T ss_pred             -HHHHHHHHHhcCCC-ccEEEEeecccCccchHHH
Confidence             22222222222 33 4567777777666666543

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=96.06  E-value=0.0081  Score=50.29  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=55.4

Q ss_pred             CCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           49 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        49 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      ++..+-++++|.||+-.|.+.....++-.|+.+.|.|.-+.-+.+.- ..+.+.+.+   .+.-+++.||.|..
T Consensus        94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDRA  163 (842)
T ss_pred             CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhHH
Confidence            45678999999999999999999999999999999999887776654 445555543   34456788999953

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=95.96  E-value=0.016  Score=48.58  Aligned_cols=80  Identities=15%  Similarity=0.106  Sum_probs=55.2

Q ss_pred             ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH
Q 028595           66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL  145 (207)
Q Consensus        66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~  145 (207)
                      ++++|+ .+..+|+++.+.|+.|+--|...  .+...+....+....+++.||.||.+..            ......+|
T Consensus       165 WRQLWR-VlErSDivvqIVDARnPllfr~~--dLe~Yvke~d~~K~~~LLvNKaDLl~~~------------qr~aWa~Y  229 (562)
T KOG1424|consen  165 WRQLWR-VLERSDIVVQIVDARNPLLFRSP--DLEDYVKEVDPSKANVLLVNKADLLPPE------------QRVAWAEY  229 (562)
T ss_pred             HHHHHH-HHhhcceEEEEeecCCccccCCh--hHHHHHhccccccceEEEEehhhcCCHH------------HHHHHHHH
Confidence            344444 35678999999999998766553  3333444333457789999999997655            33445556


Q ss_pred             HHHhCCcEEEEeccCC
Q 028595          146 RKQIGASYYIECSSKT  161 (207)
Q Consensus       146 ~~~~~~~~~~e~Sa~~  161 (207)
                      .+..++ +++..||..
T Consensus       230 F~~~ni-~~vf~SA~~  244 (562)
T KOG1424|consen  230 FRQNNI-PVVFFSALA  244 (562)
T ss_pred             HHhcCc-eEEEEeccc
Confidence            666676 888888876

>KOG2484 consensus GTPase [General function prediction only]

Probab=95.92  E-value=0.0023  Score=51.77  Aligned_cols=54  Identities=15%  Similarity=-0.014  Sum_probs=37.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G   62 (207)
                      .+.+.|+|-++|| |||+||+|...+.... -++.|.+-+. .+.++   -.+.|.|.||
T Consensus       252 sIrvGViG~PNVG-KSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ld---k~i~llDsPg  306 (435)
T KOG2484|consen  252 SIRVGIIGYPNVG-KSSVINSLKRRKACNV-GNVPGVTRSMQEVKLD---KKIRLLDSPG  306 (435)
T ss_pred             ceEeeeecCCCCC-hhHHHHHHHHhccccC-CCCccchhhhhheecc---CCceeccCCc
Confidence            4679999999999 9999999998875322 2233333322 33333   2468999998

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=95.61  E-value=0.0073  Score=47.49  Aligned_cols=59  Identities=14%  Similarity=0.039  Sum_probs=0.0

Q ss_pred             ccceeEEEEecccccceeeeeeecc------CCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVS------GRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G   62 (207)
                      +....+.++|-|++| ||+|||.+.      .+.......|.++......+.+.+... +.+.||||
T Consensus       141 ~~~~~vmVvGvPNVG-KSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~-vy~iDTPG  205 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVG-KSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPP-VYLIDTPG  205 (335)
T ss_pred             CCceeEEEEcCCCCC-hHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCc-eEEecCCC

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.61  E-value=0.0019  Score=46.40  Aligned_cols=22  Identities=5%  Similarity=0.022  Sum_probs=17.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ||+|.|++++| ||||++.|...
T Consensus         1 rI~i~G~~stG-KTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTG-KTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSH-HHHHHHHHHHH
T ss_pred             CEEEECCCCCC-HHHHHHHHHHc
Confidence            79999999999 99999999755

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=95.44  E-value=0.12  Score=42.34  Aligned_cols=161  Identities=12%  Similarity=0.015  Sum_probs=89.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC------CCcc-----------------ccCceeeeee--eEEEE-----CCeEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS------SIWD-----------------YIPTVFDNFS--ANVVA-----EGTTV   53 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~------~~~~-----------------~~~t~~~~~~--~~~~~-----~~~~~   53 (207)
                      ..+++++|--.+| |||+-..+....      ....                 +..|..++-.  +.+.+     .-..-
T Consensus        79 hvn~vfighVdag-kstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~  157 (501)
T KOG0459|consen   79 HVNAVFIGHVDAG-KSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK  157 (501)
T ss_pred             CceEEEEEEEecc-ccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence            4689999999999 999888765221      0000                 1111111111  11111     11234


Q ss_pred             EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHH-----HHHHHHHhhcCCCCcEEEEeeCCCcccCcccc
Q 028595           54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL-----KKWIPELQHYSPGVPVVLVGTKLDLREDKHYL  128 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-----~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~  128 (207)
                      .+.+.|.||+..|-..--.-...||..++|.++.-.+--....     .. ..++.+-..-...|++.||.|-+..+=. 
T Consensus       158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTRE-ha~Lakt~gv~~lVv~vNKMddPtvnWs-  235 (501)
T KOG0459|consen  158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKTAGVKHLIVLINKMDDPTVNWS-  235 (501)
T ss_pred             eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhH-HHHHHHhhccceEEEEEEeccCCccCcc-
Confidence            6789999999888654444455689999998874321110000     00 0112111134678999999997643210 


Q ss_pred             cCCCCCcccCHHHHHHHHHHhCC-----cEEEEeccCCCCCHHHHHH
Q 028595          129 ADHPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQNVKAVFD  170 (207)
Q Consensus       129 ~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~  170 (207)
                         .+-.....+....+.+.+|+     ..|+++|..+|.++.+.-.
T Consensus       236 ---~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  236 ---NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             ---hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence               00000133456667776664     2588999999999887653

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.32  E-value=0.051  Score=50.51  Aligned_cols=111  Identities=18%  Similarity=0.027  Sum_probs=58.5

Q ss_pred             EEEEecccccceeeeeeeccCCCCC--cccc----CceeeeeeeEEEECCeEEEEEEEeCCCCcc--------ccccccc
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSI--WDYI----PTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPL   72 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~--~~~~----~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~   72 (207)
                      .++||.+++| |||++..- +.+|.  ....    ...+..+.. -.+.+   .-.++||+|...        -...|..
T Consensus       128 y~viG~pgsG-KTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSG-KTTALLNS-GLQFPLAEQMGALGLAGPGTRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCC-cchHHhcc-cccCcchhhhccccccCCCCcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence            4799999999 99998653 22221  1111    111111111 11122   235789888321        1222332


Q ss_pred             e---------ecCCcEEEEEEeCCChhhHH-----HHHHHH---HHHHhh-cCCCCcEEEEeeCCCccc
Q 028595           73 S---------YRGADVFVLAFSLVSRASYE-----NVLKKW---IPELQH-YSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        73 ~---------~~~~d~~i~v~d~~~~~s~~-----~~~~~~---~~~i~~-~~~~~piivv~nK~D~~~  123 (207)
                      +         .+--+++|+..|+.+.-+..     .....+   +.++.. ..-..|+++++||.|+.+
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence            2         34478999999987531111     111222   233322 224799999999999864

>KOG2484 consensus GTPase [General function prediction only]

Probab=95.27  E-value=0.014  Score=47.38  Aligned_cols=56  Identities=13%  Similarity=0.040  Sum_probs=38.5

Q ss_pred             ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595           68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~  125 (207)
                      ......+..+|++|-|.|+.||.+-..-  ..-..+.....+...|+|+||+|+.+..
T Consensus       138 ke~rkvve~sDVVleVlDARDPlgtR~~--~vE~~V~~~~gnKkLILVLNK~DLVPrE  193 (435)
T KOG2484|consen  138 KEFRKVVEASDVVLEVLDARDPLGTRCP--EVEEAVLQAHGNKKLILVLNKIDLVPRE  193 (435)
T ss_pred             HHHHHHHhhhheEEEeeeccCCCCCCCh--hHHHHHHhccCCceEEEEeehhccCCHH
Confidence            3344456679999999999999776553  2333333222458899999999996543

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=95.14  E-value=0.022  Score=37.82  Aligned_cols=103  Identities=13%  Similarity=-0.022  Sum_probs=57.4

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   86 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   86 (207)
                      |+++|..+..|||++...+...--......+...+    ..... ...+.+.|+|+....  .....+..+|.++++.+.
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d----~d~~~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~   74 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVD----LDLQF-GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ   74 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE----CCCCC-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC
Confidence            56777777777999776653211000011111100    00000 016789999886532  234467789999998875


Q ss_pred             CChhhHHHHHHHHHHHHhhcC-C-CCcEEEEeeC
Q 028595           87 VSRASYENVLKKWIPELQHYS-P-GVPVVLVGTK  118 (207)
Q Consensus        87 ~~~~s~~~~~~~~~~~i~~~~-~-~~piivv~nK  118 (207)
                      + ..+...+ ..+++.+++.. + ...+.+|.|+
T Consensus        75 ~-~~s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          75 D-LPSIRNA-KRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             C-hHHHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence            4 4556556 56777666544 2 3456677764

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.12  E-value=0.087  Score=45.00  Aligned_cols=89  Identities=20%  Similarity=0.156  Sum_probs=48.6

Q ss_pred             EEEEEEEeCCCCcccccc-------ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           52 TVNLGLWDTAGQEDYNRL-------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      .+.+.|+||+|.......       ... .. ....++|.+.+.  +..++ ...+..+..   ..+.-+|.||.|... 
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~-~~a~lLVLpAts--s~~Dl-~eii~~f~~---~~~~gvILTKlDEt~-  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRA-AR-QVTSLLVLPANA--HFSDL-DEVVRRFAH---AKPQGVVLTKLDETG-  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHH-hh-cCCcEEEEECCC--ChhHH-HHHHHHHHh---hCCeEEEEecCcCcc-
Confidence            478899999995432211       011 11 234566666654  23333 233333332   346779999999732 


Q ss_pred             cccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCH
Q 028595          125 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV  165 (207)
Q Consensus       125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i  165 (207)
                                   ....+.......+. ++..++  +|++|
T Consensus       499 -------------~lG~aLsv~~~~~L-PI~yvt--~GQ~V  523 (559)
T PRK12727        499 -------------RFGSALSVVVDHQM-PITWVT--DGQRV  523 (559)
T ss_pred             -------------chhHHHHHHHHhCC-CEEEEe--CCCCc
Confidence                         34566677777777 544443  34444

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=94.98  E-value=0.044  Score=36.00  Aligned_cols=83  Identities=8%  Similarity=0.030  Sum_probs=48.0

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   86 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   86 (207)
                      |++.|..+..||||+...+...- ...-.++..      +..| ..+.+.++|+|+.....  ....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~------~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLL------IDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEE------EeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence            56777665555999877654221 001011111      1111 12678899998865332  23567779999999986


Q ss_pred             CChhhHHHHHHHHHH
Q 028595           87 VSRASYENVLKKWIP  101 (207)
Q Consensus        87 ~~~~s~~~~~~~~~~  101 (207)
                       +..++..+ ..+++
T Consensus        72 -~~~s~~~~-~~~~~   84 (104)
T cd02042          72 -SPLDLDGL-EKLLE   84 (104)
T ss_pred             -CHHHHHHH-HHHHH
Confidence             45566666 45544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=94.98  E-value=0.13  Score=41.38  Aligned_cols=75  Identities=16%  Similarity=0.088  Sum_probs=43.7

Q ss_pred             CcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-CcEE
Q 028595           77 ADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYY  154 (207)
Q Consensus        77 ~d~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~  154 (207)
                      -|+++-|.|..+-..... ....+..++..     -=+|+.||.|+.+..            ..+..+...++++ ..++
T Consensus       117 ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~~~------------~l~~l~~~l~~lnp~A~i  179 (323)
T COG0523         117 LDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVDAE------------ELEALEARLRKLNPRARI  179 (323)
T ss_pred             eceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCCHH------------HHHHHHHHHHHhCCCCeE
Confidence            588999999876544332 21233333322     137889999997664            2344555666654 3477


Q ss_pred             EEeccCCCCCHHHHH
Q 028595          155 IECSSKTQQNVKAVF  169 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f  169 (207)
                      +.+|.. +....+++
T Consensus       180 ~~~~~~-~~~~~~ll  193 (323)
T COG0523         180 IETSYG-DVDLAELL  193 (323)
T ss_pred             EEcccc-CCCHHHhh
Confidence            777773 34443333

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=94.80  E-value=0.53  Score=34.11  Aligned_cols=137  Identities=9%  Similarity=0.024  Sum_probs=84.4

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      ..|.++|..+.+ +..|...+....                     +.+.+++.-...-... ......=...|.++|++
T Consensus        16 atiLLVg~e~~~-~~~LA~a~l~~~---------------------~~~~l~Vh~a~sLPLp-~e~~~lRprIDlIVFvi   72 (176)
T PF11111_consen   16 ATILLVGTEEAL-LQQLAEAMLEED---------------------KEFKLKVHLAKSLPLP-SENNNLRPRIDLIVFVI   72 (176)
T ss_pred             eEEEEecccHHH-HHHHHHHHHhhc---------------------cceeEEEEEeccCCCc-ccccCCCceeEEEEEEE
Confidence            457888888888 887777765321                     0112222222111000 00011112469999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  164 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  164 (207)
                      |....-|++.+ +.-+..+....---.+.++++-..-.+...          +...+..+++..|++ |++.+.-.+.++
T Consensus        73 nl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~~~le~~~~  140 (176)
T PF11111_consen   73 NLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PLLFADLENEEG  140 (176)
T ss_pred             ecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEEeecccchH
Confidence            99999999998 444444422221123556666555444333          488999999999998 888888777777


Q ss_pred             HHHHHHHHHHHH
Q 028595          165 VKAVFDAAIKVV  176 (207)
Q Consensus       165 i~~~f~~i~~~~  176 (207)
                      ...+=+.+++.+
T Consensus       141 ~~~lAqRLL~~l  152 (176)
T PF11111_consen  141 RTSLAQRLLRML  152 (176)
T ss_pred             HHHHHHHHHHHH
Confidence            777777776655

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=94.74  E-value=0.013  Score=42.49  Aligned_cols=52  Identities=12%  Similarity=-0.015  Sum_probs=33.2

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDT   60 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~   60 (207)
                      +|.+-|.+++| ||||+++++..- .... -.++-.++..+.-+|..+-+.+.|.
T Consensus         1 ~i~iTG~pG~G-KTTll~k~i~~l-~~~~-~~v~Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVG-KTTLLKKVIEEL-KKKG-LPVGGFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSS-HHHHHHHHHHHH-HHTC-GGEEEEEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCC-HHHHHHHHHHHh-hccC-CccceEEeecccCCCceEEEEEEEC
Confidence            68899999999 999999987332 1111 1233344555555666777777777

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=94.66  E-value=0.25  Score=40.52  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=69.2

Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      +-.+|++|-|.|+.|+-.-..  ......+.+..|..+++.|+||+||.+..           ++..=...+++++.- -
T Consensus       211 iDSSDVvvqVlDARDPmGTrc--~~ve~ylkke~phKHli~vLNKvDLVPtw-----------vt~~Wv~~lSkeyPT-i  276 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIYVLNKVDLVPTW-----------VTAKWVRHLSKEYPT-I  276 (572)
T ss_pred             hcccceeEEeeeccCCccccc--HHHHHHHhhcCCcceeEEEeeccccccHH-----------HHHHHHHHHhhhCcc-e
Confidence            346899999999999855433  33444555556789999999999997654           244445555555543 3


Q ss_pred             EEEeccCCCCC---HHHHHHHHHHHHhCCCc--------------chhhhcccCCCeEEeeecCCc
Q 028595          154 YIECSSKTQQN---VKAVFDAAIKVVIKPPQ--------------KQKEKKKKQRGCLLNVFCGRN  202 (207)
Q Consensus       154 ~~e~Sa~~~~~---i~~~f~~i~~~~~~~~~--------------~~~~~~~~~~~c~~~~~~~~~  202 (207)
                      -|..|..+..|   +..++..+.+...+.++              ..-+.-++++-|..--+.|-+
T Consensus       277 AfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET  342 (572)
T KOG2423|consen  277 AFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET  342 (572)
T ss_pred             eeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc
Confidence            34555554444   45555555555443322              333445566666665555543

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.60  E-value=0.09  Score=43.06  Aligned_cols=133  Identities=14%  Similarity=0.081  Sum_probs=68.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc-cc--cCc-eeeee---------------eeEEE-E-CC----------eE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DY--IPT-VFDNF---------------SANVV-A-EG----------TT   52 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~--~~t-~~~~~---------------~~~~~-~-~~----------~~   52 (207)
                      ...++++|..++| |||++.+|...-... ..  .-- ..+.|               ...+. + ++          ..
T Consensus       137 g~ii~lvGptGvG-KTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        137 GGVFALMGPTGVG-KTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CcEEEEECCCCCC-HHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            3468899999999 999999986431100 00  000 00111               00010 1 10          23


Q ss_pred             EEEEEEeCCCCccccccc----cc--eecCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCC-C-cEEEEeeCCCccc
Q 028595           53 VNLGLWDTAGQEDYNRLR----PL--SYRGADVFVLAFSLVS-RASYENVLKKWIPELQHYSPG-V-PVVLVGTKLDLRE  123 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~-~-piivv~nK~D~~~  123 (207)
                      ..+.++||+|....+...    ..  ......-.++|.+.+. .+...++...|.......... . +-=+|.||.|...
T Consensus       216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~  295 (374)
T PRK14722        216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS  295 (374)
T ss_pred             CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence            578899999965433211    11  1122345678888775 455555434443332211111 1 2357789999643


Q ss_pred             CcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595          124 DKHYLADHPGLVPVTTAQGEELRKQIGA  151 (207)
Q Consensus       124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~  151 (207)
                                    ....+..++...+.
T Consensus       296 --------------~~G~~l~~~~~~~l  309 (374)
T PRK14722        296 --------------NLGGVLDTVIRYKL  309 (374)
T ss_pred             --------------CccHHHHHHHHHCc
Confidence                          33456667777776

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.54  E-value=0.035  Score=38.17  Aligned_cols=24  Identities=4%  Similarity=-0.125  Sum_probs=20.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .-+++.|.+++| ||+|++.+...-
T Consensus        20 ~~v~i~G~~G~G-KT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTG-KTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCC-HHHHHHHHHHHh
Confidence            458999999999 999999987653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK08118 topology modulation protein; Reviewed

Probab=94.47  E-value=0.0089  Score=43.28  Aligned_cols=23  Identities=4%  Similarity=-0.094  Sum_probs=20.4

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .+|+|+|.+++| ||||...+...
T Consensus         2 ~rI~I~G~~GsG-KSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSG-KSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCC-HHHHHHHHHHH
Confidence            589999999999 99999998744

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=94.46  E-value=0.097  Score=42.98  Aligned_cols=125  Identities=19%  Similarity=0.147  Sum_probs=67.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCcee----eeeee-----------------EEEEC----------CeE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF----DNFSA-----------------NVVAE----------GTT   52 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~----~~~~~-----------------~~~~~----------~~~   52 (207)
                      ...|+++|+.+|| |||-+-.|...-....-.+.++    ++|.+                 .+..+          =..
T Consensus       203 ~~vi~LVGPTGVG-KTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         203 KRVIALVGPTGVG-KTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             CcEEEEECCCCCc-HHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            4578999999999 9998877653322111111111    11110                 00111          134


Q ss_pred             EEEEEEeCCCCccccccc----cceec--CCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCcccC
Q 028595           53 VNLGLWDTAGQEDYNRLR----PLSYR--GADVFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLRED  124 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~~~~  124 (207)
                      +.+.|.||.|...++...    ..++.  ...-+.+|.+++. .+...++    +..+.    .+|+ -++.||.|... 
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei----~~~f~----~~~i~~~I~TKlDET~-  352 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI----IKQFS----LFPIDGLIFTKLDETT-  352 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH----HHHhc----cCCcceeEEEcccccC-
Confidence            678899999977664432    12221  2334556666654 3333333    33332    3455 57889999643 


Q ss_pred             cccccCCCCCcccCHHHHHHHHHHhCC
Q 028595          125 KHYLADHPGLVPVTTAQGEELRKQIGA  151 (207)
Q Consensus       125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~  151 (207)
                                   .......+..+.+.
T Consensus       353 -------------s~G~~~s~~~e~~~  366 (407)
T COG1419         353 -------------SLGNLFSLMYETRL  366 (407)
T ss_pred             -------------chhHHHHHHHHhCC
Confidence                         44556666666665

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=94.40  E-value=0.78  Score=39.35  Aligned_cols=88  Identities=18%  Similarity=0.302  Sum_probs=60.3

Q ss_pred             cCCcEEEEEEeCC----------------Ch----hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC
Q 028595           75 RGADVFVLAFSLV----------------SR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL  134 (207)
Q Consensus        75 ~~~d~~i~v~d~~----------------~~----~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~  134 (207)
                      -..|++++|-.+.                |.    ..+.++ .+.++.++++  ++|++|+.||.|...+.         
T Consensus       321 l~P~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~NL-~RHIenvr~F--GvPvVVAINKFd~DTe~---------  388 (557)
T PRK13505        321 LKPDAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFANL-ERHIENIRKF--GVPVVVAINKFVTDTDA---------  388 (557)
T ss_pred             CCCCEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCCHH---------
Confidence            3468888888543                11    233444 5556666665  89999999999986553         


Q ss_pred             cccCHHHHHHHHHHhCCcEEEEec--cCCCCCHHHHHHHHHHHHhC
Q 028595          135 VPVTTAQGEELRKQIGASYYIECS--SKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       135 ~~v~~~~~~~~~~~~~~~~~~e~S--a~~~~~i~~~f~~i~~~~~~  178 (207)
                         ..+.++++|++.|. ++..+.  +.=|+|-.++-+.+++.+.+
T Consensus       389 ---Ei~~I~~~c~e~Gv-~va~~~~~~~Gg~Gai~LA~aVveA~~~  430 (557)
T PRK13505        389 ---EIAALKELCEELGV-EVALSEVWAKGGEGGVELAEKVVELIEE  430 (557)
T ss_pred             ---HHHHHHHHHHHcCC-CEEEecccccCCcchHHHHHHHHHHHhc
Confidence               44678999999998 666433  33467777877777777663

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=94.36  E-value=0.059  Score=45.12  Aligned_cols=83  Identities=17%  Similarity=0.094  Sum_probs=46.7

Q ss_pred             EEEEEEeCCCCcccccc-----c-cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCcccCc
Q 028595           53 VNLGLWDTAGQEDYNRL-----R-PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDK  125 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~-----~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~~~~~  125 (207)
                      ..+.|+||+|.......     . -.....+|.+++|.|.+...   ++ ......+.   +..++ -+|.||.|...  
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a-v~~a~~F~---~~l~i~gvIlTKlD~~a--  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA-KNQAKAFH---EAVGIGGIIITKLDGTA--  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH-HHHHHHHH---hcCCCCEEEEecccCCC--
Confidence            47899999996543211     0 01133578999999987743   22 12222232   23433 57889999632  


Q ss_pred             ccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595          126 HYLADHPGLVPVTTAQGEELRKQIGASYYIEC  157 (207)
Q Consensus       126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (207)
                                  .-..+...+...+. |...+
T Consensus       247 ------------~~G~~ls~~~~~~~-Pi~fi  265 (437)
T PRK00771        247 ------------KGGGALSAVAETGA-PIKFI  265 (437)
T ss_pred             ------------cccHHHHHHHHHCc-CEEEE
Confidence                        22445566666666 44433

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.33  E-value=0.0093  Score=44.67  Aligned_cols=24  Identities=17%  Similarity=0.109  Sum_probs=20.3

Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      .|||++.+-+.++++-+.+...+.
T Consensus       163 PTSALDPElv~EVL~vm~~LA~eG  186 (240)
T COG1126         163 PTSALDPELVGEVLDVMKDLAEEG  186 (240)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcC
Confidence            399999999999999888777654

>PRK14738 gmk guanylate kinase; Provisional

Probab=94.31  E-value=0.012  Score=44.17  Aligned_cols=23  Identities=9%  Similarity=-0.151  Sum_probs=19.7

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .-|+++|++++| ||||++.+...
T Consensus        14 ~~ivi~GpsG~G-K~tl~~~L~~~   36 (206)
T PRK14738         14 LLVVISGPSGVG-KDAVLARMRER   36 (206)
T ss_pred             eEEEEECcCCCC-HHHHHHHHHhc
Confidence            457889999999 99999999754

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=94.23  E-value=0.064  Score=34.18  Aligned_cols=69  Identities=12%  Similarity=0.009  Sum_probs=41.8

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc-ccceecCCcEEEEEEe
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-RPLSYRGADVFVLAFS   85 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   85 (207)
                      +++.|..++| ||++...+...--...         .....++    .+.+.|+++....... .......+|.++++.+
T Consensus         2 ~~~~g~~G~G-ktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVG-KTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCC-HHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            5677778888 9999988753310001         1112222    5789999876543221 1345567899999988


Q ss_pred             CCCh
Q 028595           86 LVSR   89 (207)
Q Consensus        86 ~~~~   89 (207)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            6543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.20  E-value=0.01  Score=45.37  Aligned_cols=22  Identities=14%  Similarity=0.021  Sum_probs=19.6

Q ss_pred             EEEEecccccceeeeeeeccCCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~   29 (207)
                      |+++|.++|| ||||+|.+.+-.
T Consensus        32 vsilGpSGcG-KSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCG-KSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCC-HHHHHHHHhCCC
Confidence            7899999999 999999987654

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=94.00  E-value=0.011  Score=48.17  Aligned_cols=83  Identities=8%  Similarity=-0.041  Sum_probs=49.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc--cccccceecCCcEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLRPLSYRGADVFV   81 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~~~~~~~~d~~i   81 (207)
                      .+-|.+||-+|+| |||+||.|-..+.. ...|..|.+..=++..  -.-.+-|+|+||---.  .+.....+   .+++
T Consensus       307 qISVGfiGYPNvG-KSSiINTLR~KkVC-kvAPIpGETKVWQYIt--LmkrIfLIDcPGvVyps~dset~ivL---kGvV  379 (572)
T KOG2423|consen  307 QISVGFIGYPNVG-KSSIINTLRKKKVC-KVAPIPGETKVWQYIT--LMKRIFLIDCPGVVYPSSDSETDIVL---KGVV  379 (572)
T ss_pred             ceeeeeecCCCCc-hHHHHHHHhhcccc-cccCCCCcchHHHHHH--HHhceeEecCCCccCCCCCchHHHHh---hcee
Confidence            4678999999999 99999999888754 3334444332100000  0123568999993211  12222222   3677


Q ss_pred             EEEeCCChhhHH
Q 028595           82 LAFSLVSRASYE   93 (207)
Q Consensus        82 ~v~d~~~~~s~~   93 (207)
                      -|=.+++++.+-
T Consensus       380 RVenv~~pe~yi  391 (572)
T KOG2423|consen  380 RVENVKNPEDYI  391 (572)
T ss_pred             eeeecCCHHHHH
Confidence            788888876654

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.98  E-value=0.026  Score=42.34  Aligned_cols=41  Identities=12%  Similarity=0.057  Sum_probs=26.8

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEE
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTV   53 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~   53 (207)
                      .+++|++++| ||||++.|..=+  +. .|  +....-.+.++|+++
T Consensus        36 TAlIGPSGcG-KST~LR~lNRmn--dl-~~--~~r~~G~v~~~g~ni   76 (253)
T COG1117          36 TALIGPSGCG-KSTLLRCLNRMN--DL-IP--GARVEGEVLLDGKNI   76 (253)
T ss_pred             EEEECCCCcC-HHHHHHHHHhhc--cc-Cc--CceEEEEEEECCeec
Confidence            4789999999 999999984221  11 12  334455677777654

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=93.94  E-value=0.012  Score=39.71  Aligned_cols=22  Identities=5%  Similarity=-0.186  Sum_probs=19.3

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .|+|.|.+++| |||+.+.|...
T Consensus         1 vI~I~G~~gsG-KST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSG-KSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHHH
T ss_pred             CEEEECCCCCC-HHHHHHHHHHH
Confidence            48899999999 99999999654

...

>PRK14737 gmk guanylate kinase; Provisional

Probab=93.84  E-value=0.017  Score=42.54  Aligned_cols=24  Identities=0%  Similarity=-0.242  Sum_probs=20.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .=|+++|.+++| ||||+++++...
T Consensus         5 ~~ivl~GpsG~G-K~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGG-KSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCC-HHHHHHHHHhcC
Confidence            347889999999 999999998653

>PRK06217 hypothetical protein; Validated

Probab=93.79  E-value=0.015  Score=42.68  Aligned_cols=23  Identities=9%  Similarity=-0.058  Sum_probs=20.4

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .+|+|+|.+++| ||||..+|...
T Consensus         2 ~~I~i~G~~GsG-KSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSG-TTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCC-HHHHHHHHHHH
Confidence            579999999999 99999998744

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=93.77  E-value=0.015  Score=42.43  Aligned_cols=25  Identities=8%  Similarity=-0.206  Sum_probs=20.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -.=+++.|++++| ||||+++|....
T Consensus         4 G~l~vlsgPSG~G-KsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVG-KSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHhhc
Confidence            3457888999999 999999998765

>PRK07261 topology modulation protein; Provisional

Probab=93.75  E-value=0.015  Score=42.30  Aligned_cols=22  Identities=14%  Similarity=-0.058  Sum_probs=19.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      +|+++|.+++| ||||...+...
T Consensus         2 ri~i~G~~GsG-KSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSG-KSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCC-HHHHHHHHHHH
Confidence            79999999999 99999998643

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=93.70  E-value=0.016  Score=40.07  Aligned_cols=24  Identities=8%  Similarity=-0.072  Sum_probs=20.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -.++++|..++| ||||++.+.+..
T Consensus        12 ~~~~i~G~nGsG-KStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSG-KSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSS-HHHHHHHHTTSS
T ss_pred             CEEEEEccCCCc-cccceeeecccc
Confidence            367999999999 999999887653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10867 signal recognition particle protein; Provisional

Probab=93.61  E-value=0.15  Score=42.60  Aligned_cols=85  Identities=15%  Similarity=0.102  Sum_probs=46.5

Q ss_pred             EEEEEEEeCCCCccccc-ccc---c--eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccC
Q 028595           52 TVNLGLWDTAGQEDYNR-LRP---L--SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLRED  124 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~  124 (207)
                      .+.+.|+||+|...... +..   .  .....+.+++|.|.+..+...    .....+.+   .++ --+|.||.|... 
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av----~~a~~F~~---~~~i~giIlTKlD~~~-  254 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAV----NTAKAFNE---ALGLTGVILTKLDGDA-  254 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHH----HHHHHHHh---hCCCCEEEEeCccCcc-
Confidence            36789999999543211 110   0  012467789999987543222    22233332   232 357779999532 


Q ss_pred             cccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595          125 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus       125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                                   ....+...+...+. |+..++
T Consensus       255 -------------rgG~alsi~~~~~~-PI~fig  274 (433)
T PRK10867        255 -------------RGGAALSIRAVTGK-PIKFIG  274 (433)
T ss_pred             -------------cccHHHHHHHHHCc-CEEEEe
Confidence                         22346667777776 544443

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=93.52  E-value=0.017  Score=42.30  Aligned_cols=22  Identities=5%  Similarity=-0.053  Sum_probs=20.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      +|+++|.+++| |||+...|...
T Consensus         2 riiilG~pGaG-K~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAG-KSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCC-HHHHHHHHHHH
Confidence            79999999999 99999999866

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=93.48  E-value=0.2  Score=44.73  Aligned_cols=92  Identities=20%  Similarity=0.060  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCCcccccc-c---cce--ecCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595           53 VNLGLWDTAGQEDYNRL-R---PLS--YRGADVFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~-~---~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~  125 (207)
                      +.+.|+||+|....+.. .   ...  ....+-.++|.|.+. .+.+.++    ...+.....--+-=+|.||.|...  
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i----~~~f~~~~~~~i~glIlTKLDEt~--  337 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV----VHAYRHGAGEDVDGCIITKLDEAT--  337 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH----HHHHhhcccCCCCEEEEeccCCCC--
Confidence            56889999994332111 0   000  123456788888874 3444444    222222110013357899999643  


Q ss_pred             ccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCH
Q 028595          126 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV  165 (207)
Q Consensus       126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i  165 (207)
                                  ....+..+....+. |+..++  +|++|
T Consensus       338 ------------~~G~iL~i~~~~~l-PI~yit--~GQ~V  362 (767)
T PRK14723        338 ------------HLGPALDTVIRHRL-PVHYVS--TGQKV  362 (767)
T ss_pred             ------------CccHHHHHHHHHCC-CeEEEe--cCCCC
Confidence                        33456667777777 544443  34455

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=93.36  E-value=0.81  Score=34.96  Aligned_cols=63  Identities=19%  Similarity=0.249  Sum_probs=40.2

Q ss_pred             EEEEEEeC-CCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC-CcEEEEeeCCCcc
Q 028595           53 VNLGLWDT-AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGTKLDLR  122 (207)
Q Consensus        53 ~~l~i~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~-~piivv~nK~D~~  122 (207)
                      +.+.+.|| +|-|.+   -+....++|.+|.|.|.+- .|+..+ .+..++.++.  + .++.+|.||.|-.
T Consensus       134 ~e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~-~sl~ta-eri~~L~~el--g~k~i~~V~NKv~e~  198 (255)
T COG3640         134 YEVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTA-ERIKELAEEL--GIKRIFVVLNKVDEE  198 (255)
T ss_pred             CcEEEEecccchhhh---ccccccCCCEEEEEeCCcH-HHHHHH-HHHHHHHHHh--CCceEEEEEeeccch
Confidence            44556666 444443   2445678999999999764 444444 3444333332  5 7899999999953

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=93.23  E-value=0.014  Score=40.90  Aligned_cols=22  Identities=0%  Similarity=-0.127  Sum_probs=19.2

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -|+++|..++| ||||+..|++.
T Consensus         2 vv~VvG~~~sG-KTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSG-KTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHHH
Confidence            37899999999 99999998754

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=93.19  E-value=0.022  Score=43.61  Aligned_cols=26  Identities=4%  Similarity=-0.203  Sum_probs=22.2

Q ss_pred             ccceeEEEEecccccceeeeeeeccCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      +..++++++|.+++| ||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSG-KT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSG-KTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCC-HHHHHHHHHHh
Confidence            456899999999999 99998888744

This is thought to be an ATPase involved in viral DNA packaging [].

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.14  E-value=0.019  Score=43.47  Aligned_cols=22  Identities=9%  Similarity=-0.123  Sum_probs=18.9

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||+|.+-+-
T Consensus        33 ~vaI~GpSGSG-KSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSG-KSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCC-HHHHHHHHhcc
Confidence            47899999999 99999998543

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=93.12  E-value=0.02  Score=39.92  Aligned_cols=19  Identities=0%  Similarity=-0.258  Sum_probs=17.5

Q ss_pred             EEEEecccccceeeeeeecc
Q 028595            7 LACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~   26 (207)
                      |+++|.+++| ||||+..+.
T Consensus         2 ii~~G~pgsG-KSt~a~~l~   20 (143)
T PF13671_consen    2 IILCGPPGSG-KSTLAKRLA   20 (143)
T ss_dssp             EEEEESTTSS-HHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHH
Confidence            6899999999 999999986

...

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=93.05  E-value=0.019  Score=34.93  Aligned_cols=21  Identities=5%  Similarity=-0.149  Sum_probs=18.3

Q ss_pred             EEEEecccccceeeeeeeccCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~   28 (207)
                      |++.|.+++| |||+.+.+...
T Consensus         2 i~i~G~~gsG-Kst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSG-KSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCC-HHHHHHHHHHH
Confidence            6889999999 99999998644

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=93.00  E-value=0.022  Score=45.80  Aligned_cols=22  Identities=9%  Similarity=-0.010  Sum_probs=19.7

Q ss_pred             EEEEecccccceeeeeeeccCCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~   29 (207)
                      ++++|++++| ||||++.+.+-.
T Consensus        32 ~vllGPSGcG-KSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCG-KSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCC-HHHHHHHHhCCC
Confidence            7899999999 999999997654

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=92.99  E-value=0.041  Score=42.84  Aligned_cols=59  Identities=17%  Similarity=0.035  Sum_probs=39.6

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCc-----cccCceeeeeeeEEEECCeEEEEEEEeCCCCcc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIW-----DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED   65 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~   65 (207)
                      =|.|+|....| ||.|+|+|.+..-..     ....|.|..........+..+.+.+.||.|...
T Consensus        23 vvsi~G~~rtG-KSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~   86 (260)
T PF02263_consen   23 VVSIVGPYRTG-KSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD   86 (260)
T ss_dssp             EEEEEEETTSS-HHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred             EEEeecCCccc-hHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence            36788888999 999999998653211     223455554444334456678999999988755

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=92.71  E-value=0.027  Score=46.58  Aligned_cols=24  Identities=13%  Similarity=-0.047  Sum_probs=21.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..+|+|+|++++| ||||++.|...
T Consensus       219 ~~~IvI~G~~gsG-KTTL~~~La~~  242 (399)
T PRK08099        219 VRTVAILGGESSG-KSTLVNKLANI  242 (399)
T ss_pred             CcEEEEEcCCCCC-HHHHHHHHHHH
Confidence            5689999999999 99999998754

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=92.66  E-value=0.026  Score=42.88  Aligned_cols=21  Identities=14%  Similarity=0.058  Sum_probs=19.1

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -|+++|.+++| ||||++++.+
T Consensus        32 ~VaiIG~SGaG-KSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAG-KSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCc-HHHHHHHHhc
Confidence            47999999999 9999999865

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.65  E-value=0.081  Score=38.77  Aligned_cols=24  Identities=13%  Similarity=0.054  Sum_probs=19.0

Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++||++.+-+.+++.-+-+.+-+.
T Consensus       179 PTSALDPElVgEVLkv~~~LAeEg  202 (256)
T COG4598         179 PTSALDPELVGEVLKVMQDLAEEG  202 (256)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhC
Confidence            399999999999988776666544

>PHA02518 ParA-like protein; Provisional

Probab=92.61  E-value=0.54  Score=34.89  Aligned_cols=67  Identities=16%  Similarity=0.157  Sum_probs=41.7

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCc
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPV-VLVGTKLDL  121 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~  121 (207)
                      .+.+.|+|+||..  .......+..+|.+|++...+..  .....+ ..++..+....+..|. .++.|+.+.
T Consensus        76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iv~n~~~~  145 (211)
T PHA02518         76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDL-VELIKARQEVTDGLPKFAFIISRAIK  145 (211)
T ss_pred             cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHH-HHHHHHHHhhCCCCceEEEEEeccCC
Confidence            4788999999873  34456678889999999987642  233333 2334443333344544 567777653

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=92.53  E-value=0.027  Score=43.52  Aligned_cols=20  Identities=10%  Similarity=-0.044  Sum_probs=17.3

Q ss_pred             EEEEecccccceeeeeeeccC
Q 028595            7 LACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~   27 (207)
                      ++++|..++| ||||++.+.+
T Consensus        31 ~~iiGpNG~G-KSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSG-KSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCC-HHHHHHHHhc
Confidence            5788888888 9999999875

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=92.48  E-value=0.027  Score=41.41  Aligned_cols=22  Identities=5%  Similarity=-0.156  Sum_probs=19.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|.+++| ||||++.+.+.
T Consensus         4 ~i~l~G~sGsG-KsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSG-KDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCC-HHHHHHHHhcc
Confidence            58999999999 99999999654

>TIGR03263 guanyl_kin guanylate kinase

Probab=92.42  E-value=0.051  Score=39.54  Aligned_cols=22  Identities=9%  Similarity=-0.141  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .|+++|.+++| ||||++.+...
T Consensus         3 ii~l~G~~GsG-KsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVG-KSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCC-HHHHHHHHHcc
Confidence            57899999999 99999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=92.34  E-value=0.092  Score=42.40  Aligned_cols=25  Identities=4%  Similarity=-0.172  Sum_probs=21.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      ...|++.|+.++| ||||++.++..-
T Consensus       160 ~~nili~G~tgSG-KTTll~aL~~~i  184 (332)
T PRK13900        160 KKNIIISGGTSTG-KTTFTNAALREI  184 (332)
T ss_pred             CCcEEEECCCCCC-HHHHHHHHHhhC
Confidence            5689999999999 999999987543

>PRK14530 adenylate kinase; Provisional

Probab=92.28  E-value=0.036  Score=41.78  Aligned_cols=24  Identities=13%  Similarity=-0.099  Sum_probs=20.4

Q ss_pred             CccceeEEEEecccccceeeeeeecc
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      |... +|+++|.+++| |||+.+.|.
T Consensus         1 ~~~~-~I~i~G~pGsG-KsT~~~~La   24 (215)
T PRK14530          1 MSQP-RILLLGAPGAG-KGTQSSNLA   24 (215)
T ss_pred             CCCC-EEEEECCCCCC-HHHHHHHHH
Confidence            3344 79999999999 999999885

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.24  E-value=0.12  Score=42.15  Aligned_cols=52  Identities=12%  Similarity=0.118  Sum_probs=33.2

Q ss_pred             eEEEEEEEeCCCCcccc-cccc-----ceecCCcEEEEEEeCCChhhHHHHHHHHHHH
Q 028595           51 TTVNLGLWDTAGQEDYN-RLRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPE  102 (207)
Q Consensus        51 ~~~~l~i~D~~G~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  102 (207)
                      +++.+.|.||+|....+ ++..     .-.-+.|-+|+|.|.+-....+.....|...
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~  239 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET  239 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence            46889999999954332 2211     1123479999999998776665553445443

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=92.14  E-value=0.032  Score=39.85  Aligned_cols=21  Identities=14%  Similarity=-0.048  Sum_probs=17.4

Q ss_pred             eeEEEEecccccceeeeeeecc
Q 028595            5 AKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~   26 (207)
                      .-|+++|+..+| ||+|+|++.
T Consensus         9 K~VailG~ESsG-KStLv~kLA   29 (187)
T COG3172           9 KTVAILGGESSG-KSTLVNKLA   29 (187)
T ss_pred             eeeeeecCcccC-hHHHHHHHH
Confidence            356788888888 999999985

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=92.09  E-value=0.04  Score=40.03  Aligned_cols=27  Identities=4%  Similarity=-0.199  Sum_probs=23.1

Q ss_pred             CccceeEEEEecccccceeeeeeeccCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      |....+|+++|.+++| ||||.+.+...
T Consensus         1 ~~~~~~I~liG~~GaG-KStl~~~La~~   27 (172)
T PRK05057          1 MAEKRNIFLVGPMGAG-KSTIGRQLAQQ   27 (172)
T ss_pred             CCCCCEEEEECCCCcC-HHHHHHHHHHH
Confidence            5566789999999999 99999998743

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=92.00  E-value=0.032  Score=38.96  Aligned_cols=21  Identities=5%  Similarity=-0.167  Sum_probs=18.8

Q ss_pred             EEEEecccccceeeeeeeccCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~   28 (207)
                      |+++|.+++| ||||++.+...
T Consensus         2 i~i~GpsGsG-Kstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVG-KSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCC-HHHHHHHHHhc
Confidence            6899999999 99999999754

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=91.97  E-value=0.034  Score=37.75  Aligned_cols=21  Identities=5%  Similarity=-0.164  Sum_probs=18.5

Q ss_pred             EEEEecccccceeeeeeeccCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~   28 (207)
                      |++.|.+++| |||+++.|...
T Consensus         1 I~i~G~~GsG-KtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSG-KTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSS-HHHHHHHHHHH
T ss_pred             CEEECCCCCC-HHHHHHHHHHH
Confidence            6899999999 99999998654

...

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=91.91  E-value=0.03  Score=40.74  Aligned_cols=22  Identities=5%  Similarity=-0.189  Sum_probs=19.1

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+...
T Consensus         3 ~~~i~G~sGsG-Kttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAG-KDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCC-HHHHHHHHHHH
Confidence            47899999999 99999998654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=91.90  E-value=0.12  Score=39.44  Aligned_cols=22  Identities=5%  Similarity=-0.115  Sum_probs=18.9

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -+.+||+.++| ||||+|.+++-
T Consensus        32 i~~LIGPNGAG-KTTlfNlitG~   53 (250)
T COG0411          32 IVGLIGPNGAG-KTTLFNLITGF   53 (250)
T ss_pred             EEEEECCCCCC-ceeeeeeeccc
Confidence            35789999999 99999999754

>PRK00300 gmk guanylate kinase; Provisional

Probab=91.87  E-value=0.042  Score=40.93  Aligned_cols=27  Identities=11%  Similarity=-0.145  Sum_probs=22.3

Q ss_pred             CccceeEEEEecccccceeeeeeeccCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      |....-|+++|.+++| ||||++.+.+.
T Consensus         2 ~~~g~~i~i~G~sGsG-Kstl~~~l~~~   28 (205)
T PRK00300          2 MRRGLLIVLSGPSGAG-KSTLVKALLER   28 (205)
T ss_pred             CCCCCEEEEECCCCCC-HHHHHHHHHhh
Confidence            4445678999999999 99999998765

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=91.87  E-value=0.034  Score=40.69  Aligned_cols=23  Identities=9%  Similarity=-0.054  Sum_probs=20.0

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .++++|..++| ||||++.+.+-.
T Consensus        27 ~~~l~G~nGsG-KSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTG-KTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCCh-HHHHHHHHHcCC
Confidence            57899999999 999999987653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=91.83  E-value=0.041  Score=41.42  Aligned_cols=22  Identities=9%  Similarity=-0.118  Sum_probs=19.8

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        32 ~~~l~G~nGsG-KSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSG-KSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCC-HHHHHHHHhCC
Confidence            57899999999 99999999865

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=91.82  E-value=0.036  Score=40.52  Aligned_cols=21  Identities=0%  Similarity=-0.319  Sum_probs=18.8

Q ss_pred             eeEEEEecccccceeeeeeecc
Q 028595            5 AKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~   26 (207)
                      .-|+++|.+++| |||+++.+.
T Consensus         4 ~ii~i~G~~GsG-KsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSG-KGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCC-HHHHHHHHH
Confidence            468899999999 999999987

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=91.81  E-value=0.21  Score=41.67  Aligned_cols=98  Identities=14%  Similarity=0.211  Sum_probs=56.6

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeee---------------------------e-eeEEEEC----
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDN---------------------------F-SANVVAE----   49 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~---------------------------~-~~~~~~~----   49 (207)
                      +...+|+|+|+.+|| ||||+.-|++.--     |+.|..                           | ...+.++    
T Consensus       611 DmdSRiaIVGPNGVG-KSTlLkLL~Gkl~-----P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~A  684 (807)
T KOG0066|consen  611 DMDSRIAIVGPNGVG-KSTLLKLLIGKLD-----PNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEA  684 (807)
T ss_pred             cccceeEEECCCCcc-HHHHHHHHhcCCC-----CCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHH
Confidence            345689999999999 9999988875421     111111                           1 1111111    


Q ss_pred             ----------CeEEEEEEEeCCCCcc-ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q 028595           50 ----------GTTVNLGLWDTAGQED-YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS  107 (207)
Q Consensus        50 ----------~~~~~l~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~  107 (207)
                                ....++.+-|..|... .-.+....+...|++|+==. +|.-.++++ ..+...|..+.
T Consensus       685 RK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP-TNNLDIESI-DALaEAIney~  751 (807)
T KOG0066|consen  685 RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP-TNNLDIESI-DALAEAINEYN  751 (807)
T ss_pred             HHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC-CCCcchhhH-HHHHHHHHhcc
Confidence                      1225678899866443 34566677777787766443 433334444 45556666653

>PRK05480 uridine/cytidine kinase; Provisional

Probab=91.79  E-value=0.046  Score=40.91  Aligned_cols=26  Identities=0%  Similarity=-0.229  Sum_probs=20.9

Q ss_pred             ccceeEEEEecccccceeeeeeeccCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ....-|++.|.+++| ||||.+.+...
T Consensus         4 ~~~~iI~I~G~sGsG-KTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSG-KTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCC-HHHHHHHHHHH
Confidence            345678888989998 99999998653

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.78  E-value=0.04  Score=40.88  Aligned_cols=22  Identities=9%  Similarity=-0.047  Sum_probs=18.9

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||+|-+.+-
T Consensus        33 ~vv~lGpSGcG-KTTLLnl~AGf   54 (259)
T COG4525          33 LVVVLGPSGCG-KTTLLNLIAGF   54 (259)
T ss_pred             EEEEEcCCCcc-HHHHHHHHhcC
Confidence            37899999999 99999987643

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.72  E-value=0.14  Score=39.91  Aligned_cols=92  Identities=13%  Similarity=-0.001  Sum_probs=54.6

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCCCCcccc--CceeeeeeeEEEECCeEEEEEEEeCCC-CccccccccceecCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYI--PTVFDNFSANVVAEGTTVNLGLWDTAG-QEDYNRLRPLSYRGA   77 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~l~i~D~~G-~~~~~~~~~~~~~~~   77 (207)
                      |+.+.=|+++|..++| |||-+-..++.+....+.  -|+.+..  .+....+..-+.-.+++- -+.|....+..++.+
T Consensus       124 ~~kRGLviiVGaTGSG-KSTtmAaMi~yRN~~s~gHIiTIEDPI--Efih~h~~CIvTQREvGvDTesw~~AlkNtlRQa  200 (375)
T COG5008         124 LAKRGLVIIVGATGSG-KSTTMAAMIGYRNKNSTGHIITIEDPI--EFIHKHKRCIVTQREVGVDTESWEVALKNTLRQA  200 (375)
T ss_pred             cccCceEEEECCCCCC-chhhHHHHhcccccCCCCceEEecChH--HHHhcccceeEEeeeeccchHHHHHHHHHHHhcC
Confidence            5667779999999999 999888887766433322  2222221  111122222222222211 234444455566667


Q ss_pred             cEEEEEEeCCChhhHHHH
Q 028595           78 DVFVLAFSLVSRASYENV   95 (207)
Q Consensus        78 d~~i~v~d~~~~~s~~~~   95 (207)
                      -=+|+.-.+.++++.+++
T Consensus       201 pDvI~IGEvRsretMeyA  218 (375)
T COG5008         201 PDVILIGEVRSRETMEYA  218 (375)
T ss_pred             CCeEEEeecccHhHHHHH
Confidence            777888888888888887

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=91.67  E-value=0.04  Score=41.27  Aligned_cols=22  Identities=5%  Similarity=-0.173  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        29 ~~~l~G~nGsG-KSTLl~~l~G~   50 (211)
T cd03225          29 FVLIVGPNGSG-KSTLLRLLNGL   50 (211)
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            47899999999 99999999865

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=91.63  E-value=0.044  Score=36.49  Aligned_cols=20  Identities=5%  Similarity=-0.147  Sum_probs=18.1

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      -++++|.+++| ||||++.+.
T Consensus        17 ~v~I~GpSGsG-KSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIG-KTELALELI   36 (107)
T ss_pred             EEEEEcCCCCC-HHHHHHHhh
Confidence            58999999999 999999975

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=91.61  E-value=0.042  Score=41.56  Aligned_cols=22  Identities=14%  Similarity=-0.001  Sum_probs=19.5

Q ss_pred             EEEEecccccceeeeeeeccCCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~   29 (207)
                      ++++|..++| ||||++.+++--
T Consensus        32 v~llG~NGaG-KTTlLkti~Gl~   53 (237)
T COG0410          32 VALLGRNGAG-KTTLLKTIMGLV   53 (237)
T ss_pred             EEEECCCCCC-HHHHHHHHhCCC
Confidence            6899999999 999999998664

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.58  E-value=0.042  Score=44.49  Aligned_cols=22  Identities=9%  Similarity=-0.005  Sum_probs=19.7

Q ss_pred             EEEEecccccceeeeeeeccCCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~   29 (207)
                      ++++|+++|| |||+++.+.+-.
T Consensus        34 ~~lLGPSGcG-KTTlLR~IAGfe   55 (352)
T COG3842          34 VTLLGPSGCG-KTTLLRMIAGFE   55 (352)
T ss_pred             EEEECCCCCC-HHHHHHHHhCCC
Confidence            6799999999 999999998665

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=91.56  E-value=0.046  Score=41.08  Aligned_cols=22  Identities=5%  Similarity=-0.102  Sum_probs=19.8

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|.+++| ||||++.+.+-
T Consensus        31 ~~~i~G~nGsG-KSTLl~~l~Gl   52 (216)
T TIGR00960        31 MVFLVGHSGAG-KSTFLKLILGI   52 (216)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            57899999999 99999999865

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=91.56  E-value=0.042  Score=40.47  Aligned_cols=22  Identities=27%  Similarity=0.137  Sum_probs=19.3

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+.+-
T Consensus        20 ~~~i~G~nGsG-KSTLl~~i~G~   41 (190)
T TIGR01166        20 VLALLGANGAG-KSTLLLHLNGL   41 (190)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            47899999999 99999998765

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=91.47  E-value=0.037  Score=32.94  Aligned_cols=20  Identities=0%  Similarity=-0.306  Sum_probs=16.5

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      -.++.|..++| ||||+..+.
T Consensus        25 ~tli~G~nGsG-KSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSG-KSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCC-HHHHHHHHH
Confidence            36788888998 999998764

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=91.45  E-value=0.22  Score=40.46  Aligned_cols=25  Identities=4%  Similarity=-0.262  Sum_probs=21.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      ..+|++.|+.++| ||||++.+++.-
T Consensus       162 ~~nilI~G~tGSG-KTTll~aLl~~i  186 (344)
T PRK13851        162 RLTMLLCGPTGSG-KTTMSKTLISAI  186 (344)
T ss_pred             CCeEEEECCCCcc-HHHHHHHHHccc
Confidence            4689999999999 999999998653

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=91.42  E-value=0.048  Score=41.16  Aligned_cols=22  Identities=5%  Similarity=-0.174  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        28 ~~~i~G~nGsG-KSTLl~~i~G~   49 (220)
T cd03265          28 IFGLLGPNGAG-KTTTIKMLTTL   49 (220)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            57899999999 99999998865

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=91.31  E-value=0.047  Score=38.42  Aligned_cols=23  Identities=4%  Similarity=-0.012  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+..
T Consensus        28 ~~~i~G~nGsG-KStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAG-KSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCC-HHHHHHHHcCCC
Confidence            46899999999 999999997663

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=91.30  E-value=0.046  Score=41.69  Aligned_cols=22  Identities=14%  Similarity=-0.046  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        28 ~~~l~G~nGsG-KSTLl~~l~G~   49 (235)
T cd03261          28 ILAIIGPSGSG-KSTLLRLIVGL   49 (235)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            57899999999 99999999865

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=91.28  E-value=0.046  Score=40.93  Aligned_cols=22  Identities=5%  Similarity=-0.201  Sum_probs=19.8

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|.+++| ||||++.+.+-
T Consensus        27 ~~~i~G~nGsG-KSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAG-KTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCC-HHHHHHHHhCC
Confidence            67899999999 99999999765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=91.25  E-value=0.052  Score=40.49  Aligned_cols=22  Identities=9%  Similarity=-0.136  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        28 ~~~i~G~nGsG-KSTLl~~l~Gl   49 (205)
T cd03226          28 IIALTGKNGAG-KTTLAKILAGL   49 (205)
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            57899999999 99999999765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=91.23  E-value=0.05  Score=39.74  Aligned_cols=21  Identities=5%  Similarity=-0.308  Sum_probs=18.4

Q ss_pred             eeEEEEecccccceeeeeeecc
Q 028595            5 AKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~   26 (207)
                      -.++++|.+++| ||||++.+.
T Consensus        22 ~~~~l~G~nG~G-KSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSG-KSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCC-HHHHHHHHh
Confidence            368999999999 999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=91.21  E-value=0.047  Score=40.85  Aligned_cols=22  Identities=9%  Similarity=-0.097  Sum_probs=19.8

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        28 ~~~i~G~nGsG-KSTLl~~l~G~   49 (210)
T cd03269          28 IFGLLGPNGAG-KTTTIRMILGI   49 (210)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            47899999999 99999999875

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=91.20  E-value=0.1  Score=38.84  Aligned_cols=23  Identities=4%  Similarity=-0.270  Sum_probs=19.1

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -|++.|+.++| |||+++.+...-
T Consensus         3 lilI~GptGSG-KTTll~~ll~~~   25 (198)
T cd01131           3 LVLVTGPTGSG-KSTTLAAMIDYI   25 (198)
T ss_pred             EEEEECCCCCC-HHHHHHHHHHHh
Confidence            37899999999 999999876543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=91.19  E-value=0.038  Score=40.96  Aligned_cols=21  Identities=0%  Similarity=-0.200  Sum_probs=18.2

Q ss_pred             EEEEecccccceeeeeeeccCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~   28 (207)
                      |++.|++++| ||||.+.+.+.
T Consensus         2 igi~G~~GsG-KSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSG-KTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCC-HHHHHHHHHHH
Confidence            6889999999 99999998653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=91.16  E-value=0.047  Score=43.93  Aligned_cols=24  Identities=13%  Similarity=-0.024  Sum_probs=21.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..+|+++|.+++| ||||++.+...
T Consensus       162 ~~~~~~~G~~~~g-kstl~~~l~~~  185 (325)
T TIGR01526       162 VKTVAILGGESTG-KSTLVNKLAAV  185 (325)
T ss_pred             CcEEEEECCCCCC-HHHHHHHHHHh
Confidence            3589999999999 99999998754

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=91.15  E-value=0.049  Score=41.71  Aligned_cols=22  Identities=5%  Similarity=-0.133  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|.+++| ||||++.+.+-
T Consensus        30 ~~~l~G~nGsG-KSTLl~~l~Gl   51 (243)
T TIGR02315        30 FVAIIGPSGAG-KSTLLRCINRL   51 (243)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            57899999999 99999998765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=91.15  E-value=0.053  Score=40.67  Aligned_cols=22  Identities=0%  Similarity=-0.262  Sum_probs=19.8

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|.+++| ||||++.+.+-
T Consensus        29 ~~~i~G~nGsG-KSTLl~~l~G~   50 (214)
T cd03292          29 FVFLVGPSGAG-KSTLLKLIYKE   50 (214)
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            57899999999 99999999865

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=91.08  E-value=0.053  Score=39.76  Aligned_cols=23  Identities=13%  Similarity=-0.035  Sum_probs=20.4

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .+.++|.+++| ||||+|-+.+-.
T Consensus        27 ~vAi~GpSGaG-KSTLLnLIAGF~   49 (231)
T COG3840          27 IVAILGPSGAG-KSTLLNLIAGFE   49 (231)
T ss_pred             EEEEECCCCcc-HHHHHHHHHhcc
Confidence            68999999999 999999987654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=91.08  E-value=0.052  Score=36.92  Aligned_cols=24  Identities=0%  Similarity=-0.191  Sum_probs=20.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      ..++++|++++| ||+++..+...-
T Consensus         3 ~~~~l~G~~G~G-KTtl~~~l~~~~   26 (148)
T smart00382        3 EVILIVGPPGSG-KTTLARALAREL   26 (148)
T ss_pred             CEEEEECCCCCc-HHHHHHHHHhcc
Confidence            468999999999 999999987654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=91.07  E-value=0.043  Score=39.89  Aligned_cols=22  Identities=9%  Similarity=-0.191  Sum_probs=18.7

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -+.++|.+++| ||||+.++...
T Consensus         8 ii~ivG~sgsG-KTTLi~~li~~   29 (173)
T PRK10751          8 LLAIAAWSGTG-KTTLLKKLIPA   29 (173)
T ss_pred             EEEEECCCCCh-HHHHHHHHHHH
Confidence            46889999999 99999998744

>PRK13949 shikimate kinase; Provisional

Probab=91.07  E-value=0.052  Score=39.33  Aligned_cols=22  Identities=5%  Similarity=-0.185  Sum_probs=19.6

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .+|+++|.+++| |||+.+.+..
T Consensus         2 ~~I~liG~~GsG-Kstl~~~La~   23 (169)
T PRK13949          2 ARIFLVGYMGAG-KTTLGKALAR   23 (169)
T ss_pred             cEEEEECCCCCC-HHHHHHHHHH
Confidence            489999999999 9999998764

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=91.05  E-value=0.05  Score=41.47  Aligned_cols=22  Identities=9%  Similarity=-0.050  Sum_probs=19.9

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        37 ~~~l~G~nGsG-KSTLl~~l~Gl   58 (233)
T PRK11629         37 MMAIVGSSGSG-KSTLLHLLGGL   58 (233)
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            57899999999 99999999865

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.04  E-value=0.054  Score=40.09  Aligned_cols=23  Identities=9%  Similarity=-0.221  Sum_probs=20.4

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .++++|..++| ||||++.+.+-.
T Consensus        28 ~~~l~G~nGsG-KSTLl~~l~G~~   50 (195)
T PRK13541         28 ITYIKGANGCG-KSSLLRMIAGIM   50 (195)
T ss_pred             EEEEECCCCCC-HHHHHHHHhcCC
Confidence            57899999999 999999998764

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=91.02  E-value=0.052  Score=40.93  Aligned_cols=23  Identities=13%  Similarity=-0.047  Sum_probs=19.8

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .++++|.+++| ||||++.+.+-.
T Consensus        28 ~~~i~G~nGsG-KSTLl~~l~Gl~   50 (222)
T cd03224          28 IVALLGRNGAG-KTTLLKTIMGLL   50 (222)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCCC
Confidence            57899999999 999999887653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=91.00  E-value=0.052  Score=41.08  Aligned_cols=22  Identities=9%  Similarity=-0.061  Sum_probs=19.8

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        33 ~~~i~G~nGsG-KSTLl~~l~G~   54 (228)
T cd03257          33 TLGLVGESGSG-KSTLARAILGL   54 (228)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            58999999999 99999999865

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins

Probab=90.99  E-value=0.11  Score=46.47  Aligned_cols=53  Identities=11%  Similarity=-0.108  Sum_probs=31.4

Q ss_pred             EecccccceeeeeeeccCCCCCccc-----cCceeeeeeeEEEECCeEEEEEEEeCCCC
Q 028595           10 LFATQVTSFLLYVLSVSGRSSIWDY-----IPTVFDNFSANVVAEGTTVNLGLWDTAGQ   63 (207)
Q Consensus        10 iG~~~~GgKssli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   63 (207)
                      +|..++| ||||+|.+.+..|..-.     .-|.|.............-.+.++|+-|.
T Consensus         1 ~g~qssg-kstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~   58 (742)
T PF05879_consen    1 FGSQSSG-KSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGT   58 (742)
T ss_pred             CCCCCCc-HHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCC
Confidence            4777777 99999999999875421     12333333222221122235678999763

It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=90.98  E-value=0.058  Score=40.60  Aligned_cols=22  Identities=9%  Similarity=-0.129  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        33 ~~~i~G~nGsG-KSTLl~~l~Gl   54 (218)
T cd03266          33 VTGLLGPNGAG-KTTTLRMLAGL   54 (218)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            57899999999 99999999764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=90.98  E-value=0.051  Score=40.94  Aligned_cols=23  Identities=9%  Similarity=-0.083  Sum_probs=20.2

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .++++|.+++| ||||++.+.+-.
T Consensus        30 ~~~i~G~nGsG-KSTLl~~l~Gl~   52 (220)
T cd03263          30 IFGLLGHNGAG-KTTTLKMLTGEL   52 (220)
T ss_pred             EEEEECCCCCC-HHHHHHHHhCCC
Confidence            57899999999 999999998753

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		9e-69
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-68
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-67
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-63
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-46
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-46
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-46
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-46
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-46
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-46
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-46
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		4e-46
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		4e-46
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		4e-46
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-46
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-45
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-45
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-45
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-45
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-45
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		3e-45
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-45
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-45
1mh1_A	186	Small G-Protein Length = 186		4e-45
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		5e-45
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		6e-45
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		7e-45
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		9e-45
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		9e-45
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-44
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-44
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		5e-44
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-43
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		7e-39
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-37
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-37
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-37
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-37
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-37
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-37
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-37
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-37
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-37
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		4e-37
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-37
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-37
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-37
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		4e-37
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		5e-37
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-37
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		5e-37
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-36
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-36
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-36
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-36
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-36
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-36
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-36
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-36
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-36
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-36
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-36
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-36
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-36
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-36
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-36
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		3e-36
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		3e-36
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-36
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-36
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		4e-36
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		5e-36
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		5e-36
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-36
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		7e-36
2kb0_A	178	Cdc42(T35a) Length = 178		8e-36
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-35
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-35
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-33
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-27
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		3e-27
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-25
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-25
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-25
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		3e-23
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-23
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		4e-23
2efc_B	181	Ara7-GdpATVPS9A Length = 181		7e-16
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-14
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-14
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-13
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-13
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-13
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-13
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-13
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-13
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		3e-13
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-13
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-13
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-13
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-13
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		4e-13
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		4e-13
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-13
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		4e-13
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		4e-13
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-13
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-13
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-13
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-13
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-13
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		5e-13
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		5e-13
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		6e-13
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-13
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-13
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-13
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		8e-13
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		8e-13
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		8e-13
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		8e-13
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		8e-13
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-13
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		9e-13
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-13
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-13
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-12
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-12
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-12
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-12
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-12
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-12
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-12
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-12
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-12
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-12
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-12
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-12
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-12
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-12
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-12
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-12
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		3e-12
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-12
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-12
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-12
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-12
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-12
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-12
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		4e-12
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-12
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-12
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-12
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		5e-12
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-12
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		5e-12
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-12
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		5e-12
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-12
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		6e-12
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		6e-12
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		6e-12
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		6e-12
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		6e-12
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		6e-12
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		7e-12
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		8e-12
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		8e-12
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-11
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-11
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-11
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-11
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-11
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-11
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-11
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-11
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-11
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-11
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-11
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-11
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-11
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-11
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-11
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-11
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		5e-11
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		6e-11
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		6e-11
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		7e-11
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		9e-11
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-10
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-10
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-10
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-10
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-10
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-10
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-10
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-10
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-10
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-10
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-10
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-10
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-10
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-10
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-10
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-10
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		4e-10
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		4e-10
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		5e-10
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-10
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		6e-10
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		6e-10
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-10
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		7e-10
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		7e-10
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		7e-10
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-09
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-09
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-09
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-09
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-09
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-09
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-09
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		5e-09
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		6e-09
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		6e-09
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		8e-09
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-08
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-08
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-08
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-08
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-08
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-08
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-08
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-08
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-08
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-08
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-08
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		4e-08
2bku_A	177	Kap95p:rangtp Complex Length = 177		4e-08
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		4e-08
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		4e-08
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		4e-08
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		4e-08
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		4e-08
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		4e-08
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		5e-08
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		5e-08
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		5e-08
1byu_A	216	Canine Gdp-Ran Length = 216		5e-08
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		5e-08
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		6e-08
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		8e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		9e-08
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-07
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-07
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-07
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-07
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-07
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-07
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-07
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		3e-07
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		3e-07
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-07
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		6e-07
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		7e-07
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		8e-07
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-06
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-06
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-06
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-06
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-06
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		8e-06
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-05
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-05
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-05
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		6e-05
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-04
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-04
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-04
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		7e-04

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  255 bits (652), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 115/140 (82%), Positives = 129/140 (92%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 34  DYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENV KKWIPEL+HY+PGVP++LVGTKLDLR+DK +  DHPG VP+TT QGEEL+K IG+ 
Sbjct: 94  ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSP 153
Query: 153 YYIECSSKTQQNVKAVFDAA 172
            YIECSSKTQQNVKAVFDAA
Sbjct: 154 IYIECSSKTQQNVKAVFDAA 173

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  254 bits (650), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 135/151 (89%)
Query: 22  VLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81
           ++S +G +   DY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+
Sbjct: 23  LISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82
Query: 82  LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141
           LAFSL+S+ASYEN+ KKW+PEL+HY+PG+P+VLVGTKLDLR+DK +L DHPG   +TTAQ
Sbjct: 83  LAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQ 142
Query: 142 GEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
           GEELRK IGA  Y+ECSSKTQQNVKAVFD A
Sbjct: 143 GEELRKMIGAVRYLECSSKTQQNVKAVFDTA 173

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  252 bits (643), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 114/140 (81%), Positives = 127/140 (90%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV  G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 36  DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 95
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENV KKWIPEL+HY+PGVP+VLVGTKLDLR+DK +  DHPG VP+TT QGEEL+K IGA 
Sbjct: 96  ENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155
Query: 153 YYIECSSKTQQNVKAVFDAA 172
            YIECSSK+Q+NVK VFDAA
Sbjct: 156 AYIECSSKSQENVKGVFDAA 175

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/140 (79%), Positives = 126/140 (90%), Gaps = 2/140 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANV  +G  VNLGLWDTAGQEDY+RLRPLSYRGAD+FVLAFSL+S+ASY
Sbjct: 37  DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASY 96
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKW+PEL+ ++P VP+VLVGTKLDLR+DK YLADH  +  +T+ QGEELRKQIGA+
Sbjct: 97  ENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNV--ITSTQGEELRKQIGAA 154
Query: 153 YYIECSSKTQQNVKAVFDAA 172
            YIECSSKTQQNVKAVFD A
Sbjct: 155 AYIECSSKTQQNVKAVFDTA 174

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 91  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 50  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 109
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 110 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 169
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 170 AVKYLECSALTQRGLKTVFDEA 191

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 91  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 91  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 91  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 91  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 38  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 97
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 98  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 157
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 158 AVKYLECSALTQRGLKTVFDEA 179

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 91  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 41  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 100
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 101 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 160
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 161 AVKYLECSALTQRGLKTVFDEA 182

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 58  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 118 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 178 AVKYLECSALTQRGLKTVFDEA 199

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  180 bits (456), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 58  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 118 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 178 AVKYLECSALTQRGLKTVFDEA 199

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAG EDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 91  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAG EDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 91  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DV ++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 91  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS ASY
Sbjct: 31  EYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  L K+I 
Sbjct: 91  ENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEID 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           +  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 SVKYLECSALTQRGLKTVFDEA 172

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DV ++ FSLVS AS+
Sbjct: 35  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 94
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 95  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 154
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 155 AVKYLECSALTQRGLKTVFDEA 176

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DV ++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 91  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  177 bits (449), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAG EDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 34  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 93
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 94  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 153
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 154 AVKYLECSALTQRGLKTVFDEA 175

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAG EDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 58  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 118 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 178 AVKYLECSALTQRGLKTVFDEA 199

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DV ++ FSLVS AS+
Sbjct: 33  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 92
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 93  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 153 AVKYLECSALTQRGLKTVFDEA 174

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  176 bits (447), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS ASY
Sbjct: 38  EYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 97
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  L K+I 
Sbjct: 98  ENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEID 157
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           +  Y+ECS+ TQ+ +K VFD A
Sbjct: 158 SVKYLECSALTQRGLKTVFDEA 179

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  176 bits (447), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS ASY
Sbjct: 37  EYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 96
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  L K+I 
Sbjct: 97  ENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEID 156
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           +  Y+ECS+ TQ+ +K VFD A
Sbjct: 157 SVKYLECSALTQRGLKTVFDEA 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  176 bits (447), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 31  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + ++IG
Sbjct: 91  ENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           +  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 SVKYLECSALTQRGLKTVFDEA 172

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 32  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 91
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + ++IG
Sbjct: 92  ENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIG 151
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           +  Y+ECS+ TQ+ +K VFD A
Sbjct: 152 SVKYLECSALTQRGLKTVFDEA 173

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  176 bits (445), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 32  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 91
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + ++IG
Sbjct: 92  ENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIG 151
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           +  Y+ECS+ TQ+ +K VFD A
Sbjct: 152 SVKYLECSALTQRGLKTVFDEA 173

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAG EDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
            +V  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 243 HHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 303 AVKYLECSALTQRGLKTVFDEA 324

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAG EDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
            +V  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 243 HHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 303 AVKYLECSALTQRGLKTVFDEA 324

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAG EDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
            +V  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 243 HHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 303 AVKYLECSALTQRGLKTVFDEA 324

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 110/161 (68%), Gaps = 21/161 (13%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY--------------RG-- 76
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY              RG  
Sbjct: 33  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKD 92
Query: 77  ---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DH 131
              ADVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +     
Sbjct: 93  KPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 152
Query: 132 PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
             L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 153 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 193

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFD+++ +V   G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+V+ AS+
Sbjct: 46  EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASF 105
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQIG 150
           +NV ++W+PEL+ Y+P VP +L+GT++DLR+D   LA    +   P+   QG++L K+IG
Sbjct: 106 QNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 166 ACCYVECSALTQKGLKTVFDEA 187

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 34  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 94  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 154 FGYMECSAKTKDGVREVFEMA 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 34  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 94  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 154 FGYMECSAKTKDGVREVFEMA 174

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 34  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 94  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 154 FGYMECSAKTKDGVREVFEMA 174

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 35  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 95  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 154
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 155 FGYMECSAKTKDGVREVFEMA 175

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+R RPLSY   DV ++ FS+ S  S E
Sbjct: 34  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV  A+G ++  +IGA
Sbjct: 94  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 154 FGYMECSAKTKDGVREVFEMA 174

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 34  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 94  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 154 FGYMECSAKTKDGVREVFEMA 174

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 32  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 92  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 151
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 152 FGYMECSAKTKDGVREVFEMA 172

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 37  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 96
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 97  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 157 FGYMECSAKTKDGVREVFEMA 177

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 36  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 96  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 155
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 156 FGYMECSAKTKDGVREVFEMA 176

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 99/141 (70%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 34  YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR+D+H   +   +   PV + +G ++  +I A
Sbjct: 94  NIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT++ V+ VF+ A
Sbjct: 154 FGYLECSAKTKEGVREVFEMA 174

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 36  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 96  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 155
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 156 FGYMECSAKTKDGVREVFEMA 176

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 36  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 96  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 155
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 156 FGYMECSAKTKDGVREVFEMA 176

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 35  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 95  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 154
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 155 FGYMECSAKTKDGVREVFEMA 175

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 32  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 92  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 151
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 152 FGYMECSAKTKDGVREVFEMA 172

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 38  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 97
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 98  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 157
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 158 FGYMECSAKTKDGVREVFEMA 178

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 99/141 (70%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 54  YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR+D+H   +   +   PV + +G ++  +I A
Sbjct: 114 NIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT++ V+ VF+ A
Sbjct: 174 FGYLECSAKTKEGVREVFEMA 194

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 99/141 (70%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 54  YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR+D+H   +   +   PV + +G ++  +I A
Sbjct: 114 NIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT++ V+ VF+ A
Sbjct: 174 FGYLECSAKTKEGVREVFEMA 194

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 32  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 91
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 92  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 150
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 KAVKYVECSALTQKGLKNVFDEA 173

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 41  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 100
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 101 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 159
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 160 KAVKYVECSALTQKGLKNVFDEA 182

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 38  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 97
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 98  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 156
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 157 KAVKYVECSALTQKGLKNVFDEA 179

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 33  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 92
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 93  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 151
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 152 KAVKYVECSALTQKGLKNVFDEA 174

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 34  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 93
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 94  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 152
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 153 KAVKYVECSALTQKGLKNVFDEA 175

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T    E+L + + 
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQKGLKNVFDEA 172

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T    E+L + + 
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQKGLKNVFDEA 172

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 33  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 92
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T    E+L + + 
Sbjct: 93  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 152
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 153 AVKYVECSALTQKGLKNVFDEA 174

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T    E+L + + 
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQKGLKNVFDEA 172

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 34  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 93
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 94  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 152
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 153 KAVKYVECSALTQKGLKNVFDEA 175

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T    E+L + + 
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQRGLKNVFDEA 172

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 38  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 97
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 98  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 156
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 157 KAVKYVECSALTQKGLKNVFDEA 179

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T    E+L + + 
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQRGLKNVFDEA 172

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 35  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 94
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T    E+L + + 
Sbjct: 95  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 154
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 155 AVKYVECSALTQKGLKNVFDEA 176

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 99/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V   G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 96/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAG EDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 37  YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 96
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW PE++H+ P VP++LVG K DLR D+H   +   +   PV   +G ++  +IGA
Sbjct: 97  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT+  V+ VF+ A
Sbjct: 157 FGYMECSAKTKDGVREVFEMA 177

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 97/142 (68%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T    E+L + + 
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQKGLKNVFDEA 172

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/142 (50%), Positives = 99/142 (69%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPT FDNFSA V  +G  V L L DTAGQ+++++LRPL Y   D+F+L FS+VS +S+
Sbjct: 48  EYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSF 107
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           +NV +KW+PE++ + P  P++LVGT+ DLRED   L   D     PV     + L ++I 
Sbjct: 108 QNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A+ YIECS+ TQ+N+K VFDAA
Sbjct: 168 AASYIECSALTQKNLKEVFDAA 189

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A+V  +G  V L LWDTAGQEDY+RLRPLSY  ++V ++ FS+    S E
Sbjct: 39  YVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLE 98
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
           NV +KWI E+ H+  GVP++LVG K+DLR D   +      G  PVT+ +G+ +  QIGA
Sbjct: 99  NVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGA 158
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
           + Y ECS+KT   V+ VF+AA
Sbjct: 159 TGYYECSAKTGYGVREVFEAA 179

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 96/141 (68%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S E
Sbjct: 54  YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLE 113
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
           N+ +KW+PE++H+ P VP++LV  K DLR D+H   +   +   PV T  G  +  +I A
Sbjct: 114 NIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQA 173
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS+KT++ V+ VF+ A
Sbjct: 174 YDYLECSAKTKEGVREVFETA 194

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  146 bits (368), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 97/142 (68%), Gaps = 2/142 (1%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+P VFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T    E+L + + 
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
           A  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQKGLKNVFDEA 172

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 99/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAG EDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 99/143 (69%), Gaps = 4/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAG EDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 35  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 94
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D      LA +    P+T    E+L + +
Sbjct: 95  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 153
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
            A  Y+ECS+ TQ+ +K VFD A
Sbjct: 154 KAVKYVECSALTQKGLKNVFDEA 176

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 92/141 (65%), Gaps = 2/141 (1%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y PTVF+ +  N+  +G  V+L +WDTAGQ+DY+RLRPL Y  A V +L F + S  S++
Sbjct: 63  YTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD 122
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
           N+  +W PE+ H+   VP+++VG K DLR+DK  +      GL PVT  +G+E+ + +GA
Sbjct: 123 NIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA 182
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
             Y+ECS++   NV AVF  A
Sbjct: 183 VAYLECSARLHDNVHAVFQEA 203

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 8/139 (5%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+NFS  +  +     L LWDTAGQE+Y+RLRPLSY  +DV +L F++ +R S++
Sbjct: 51  YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 110
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
           N+  KW PE++HY      VLVG K+DLR+D        G   VT  +G++L +++G   
Sbjct: 111 NISTKWEPEIKHYIDTAKTVLVGLKVDLRKD--------GSDDVTKQEGDDLCQKLGCVA 162
Query: 154 YIECSSKTQQNVKAVFDAA 172
           YIE SS  +  +  VF+ +
Sbjct: 163 YIEASSVAKIGLNEVFEKS 181

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 8/139 (5%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+NFS  +  +     L LWDTAGQE+Y+RLRPLSY  +DV +L F++ +R S++
Sbjct: 52  YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 111
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
           N+  KW PE++HY      VLVG K+DLR+D        G   VT  +G++L +++G   
Sbjct: 112 NISTKWEPEIKHYIDTAKTVLVGLKVDLRKD--------GSDDVTKQEGDDLCQKLGCVA 163
Query: 154 YIECSSKTQQNVKAVFDAA 172
           YIE SS  +  +  VF+ +
Sbjct: 164 YIEASSVAKIGLNEVFEKS 182

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + 
Sbjct: 51  NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 110
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ++VLKKW  E+Q + P   ++LVG K DLR D   L +  +    PV+  QG  + KQIG
Sbjct: 111 DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 170
Query: 151 ASYYIECSS-KTQQNVKAVFDAA 172
           A+ YIECS+ +++ +V+ +F  A
Sbjct: 171 AATYIECSALQSENSVRDIFHVA 193

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + 
Sbjct: 35  NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 94
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ++VLKKW  E+Q + P   ++LVG K DLR D   L +  +    PV+  QG  + KQIG
Sbjct: 95  DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154
Query: 151 ASYYIECSS-KTQQNVKAVFDAA 172
           A+ YIECS+ +++ +V+ +F  A
Sbjct: 155 AATYIECSALQSENSVRDIFHVA 177

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + 
Sbjct: 56  NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 115
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ++VLKKW  E+Q + P   ++LVG K DLR D   L +  +    PV+  QG  + KQIG
Sbjct: 116 DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175
Query: 151 ASYYIECSS-KTQQNVKAVFDAA 172
           A+ YIECS+ +++ +V+ +F  A
Sbjct: 176 AATYIECSALQSENSVRDIFHVA 198

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N++A +  E   V L LWDT+G   Y+ +RPL Y  +D  +L F +    + +
Sbjct: 40  YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 99
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
           + LKKW  E+  Y P   V+L+G K DLR D   L +  H    P++  QG  + KQ+GA
Sbjct: 100 SALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 159
Query: 152 SYYIECSSKT-QQNVKAVFDAA 172
             Y+E S+ T ++++ ++F  A
Sbjct: 160 EIYLEGSAFTSEKSIHSIFRTA 181

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N++A +  E   V L LWDT+G   Y+ +RPL Y  +D  +L F +    + +
Sbjct: 56  YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 115
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
           + LKKW  E+  Y P   V+L+G K DLR D   L +  H    P++  QG  + KQ+GA
Sbjct: 116 SALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175
Query: 152 SYYIECSSKT-QQNVKAVFDAA 172
             Y+E S+ T ++++ ++F  A
Sbjct: 176 EIYLEGSAFTSEKSIHSIFRTA 197

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y+PTVF+N++A +  E   V L LWDT+G   Y+ +RPL Y  +D  +L F +    + +
Sbjct: 39  YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 98
Query: 94  NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
           + LKKW  E+  Y P   V+L+G K DLR D   L +  H    P++  QG  + KQ+GA
Sbjct: 99  SALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 158
Query: 152 SYYIECSSKT-QQNVKAVFDAA 172
             Y+E S+ T ++++ ++F  A
Sbjct: 159 EIYLEGSAFTSEKSIHSIFRTA 180

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Query: 42  FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP 101
           FS  +     TV   +WDTAGQE Y+ L P+ YRGA   ++ F + ++AS+E   KKW+ 
Sbjct: 50  FSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQ 108
Query: 102 ELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160
           ELQ   +P + + L G K DL + +             TA+  +   Q    +++E S+K
Sbjct: 109 ELQAQGNPNMVMALAGNKSDLLDARK-----------VTAEDAQTYAQENGLFFMETSAK 157
Query: 161 TQQNVKAVF 169
           T  NVK +F
Sbjct: 158 TATNVKEIF 166

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 14/141 (9%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT+ D+++   V +     L + DTAGQE++  +R    R  + F+L FS+  R 
Sbjct: 31  VTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRG 90
Query: 91  SYENVLK--KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E + K  + I  ++      P++L+G K DL        DH     VT  +G++L +Q
Sbjct: 91  SFEEIYKFQRQILRVKDRDE-FPMILIGNKADL--------DHQR--QVTQEEGQQLARQ 139
Query: 149 IGASYYIECSSKTQQNVKAVF 169
           +  + Y+E S+K + NV   F
Sbjct: 140 LKVT-YMEASAKIRMNVDQAF 159

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    ++ E  TV L +WDTAGQE +  +    YRGA   ++ + +  R S+
Sbjct: 38  YISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSF 97
Query: 93  ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           +NV K+WI E+  Y+   V  +LVG K DL   +           VT+ +G EL    G 
Sbjct: 98  DNV-KQWIQEIDRYAMENVNKLLVGNKCDLVSKR----------VVTSDEGRELADSHGI 146
Query: 152 SYYIECSSKTQQNVKAVF 169
             +IE S+K   NV+  F
Sbjct: 147 K-FIETSAKNAYNVEQAF 163

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 28/162 (17%)
Query: 27  GRSSIWD-YIPTVFDNFSANVVA----------EGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           G+SS+ + Y+   FD+ + + +           +G  V L +WDTAGQE +  LR   YR
Sbjct: 19  GKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYR 78
Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLAD 130
           GAD  +L FS+  R S+EN L  W  E  +Y+        P V++G K+D +ED+     
Sbjct: 79  GADCCLLTFSVDDRQSFEN-LGNWQKEFIYYADVKDPEHFPFVVLGNKVD-KEDRQ---- 132
Query: 131 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
                 VTT + +    + G   Y+E S+K   NV   F+ A
Sbjct: 133 ------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEA 168

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           +  Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 34  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 93
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 94  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 141
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 142 YGIP-YIETSAKTRQGVEDAF 161

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 34  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 93
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 94  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 141
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 142 YGIP-YIETSAKTRQGVEDAF 161

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 13/141 (9%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAG EDY  +R   +R  + F+L FS+    
Sbjct: 29  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHE 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+      ++ I  ++     +P+++VG K DL E +         VPV  A+    + +
Sbjct: 89  SFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQ--------VPVEEARS---KAE 137
Query: 149 IGASYYIECSSKTQQNVKAVF 169
                Y+E S+KT+ NV  VF
Sbjct: 138 EWGVQYVETSAKTRANVDKVF 158

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 36  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 95
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 96  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 143
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 144 YGIP-YIETSAKTRQGVEDAF 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 15/138 (10%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  S+E
Sbjct: 32  YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFE 91
Query: 94  NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           ++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L +  G 
Sbjct: 92  DIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYGI 139
Query: 152 SYYIECSSKTQQNVKAVF 169
             YIE S+KT+Q V+  F
Sbjct: 140 P-YIETSAKTRQGVEDAF 156

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 13/141 (9%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAG EDY  +R   +R  + F+L FS+    
Sbjct: 33  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHE 92
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+      ++ I  ++     +P+++VG K DL E +         VPV  A+    + +
Sbjct: 93  SFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQ--------VPVEEARS---KAE 141
Query: 149 IGASYYIECSSKTQQNVKAVF 169
                Y+E S+KT+ NV  VF
Sbjct: 142 EWGVQYVETSAKTRANVDKVF 162

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 47  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK 106
Query: 91  SYE--NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+   N+ ++ I  ++  S  VP+VLVG K DL          P    V T Q  EL K 
Sbjct: 107 SFADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT-VDTKQAHELAKS 154
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   +IE S+KT+Q V+  F
Sbjct: 155 YGIP-FIETSAKTRQGVEDAF 174

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG + DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 30  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 89
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL          P    V T Q ++L + 
Sbjct: 90  SFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT-VDTKQAQDLARS 137
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   +IE S+KT+Q V   F
Sbjct: 138 YGIP-FIETSAKTRQGVDDAF 157

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y P++ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 30  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 89
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL          P    V T Q ++L + 
Sbjct: 90  SFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT-VDTKQAQDLARS 137
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   +IE S+KT+Q V   F
Sbjct: 138 YGIP-FIETSAKTRQGVDDAF 157

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 30  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 89
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL          P    V T Q ++L + 
Sbjct: 90  SFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT-VDTKQAQDLARS 137
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   +IE S+KT+Q V   F
Sbjct: 138 YGIP-FIETSAKTRQGVDDAF 157

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + ++ PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAG+E+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DT GQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y P++ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 35  VDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 94
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 95  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 142
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 143 YGIP-YIETSAKTRQGVEDAF 162

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AGRTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 28/162 (17%)
Query: 27  GRSSIWD-YIPTVFDN----------FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           G+SS+ + Y+   FD+           + ++  +G  V + +WDTAGQE +  LR   YR
Sbjct: 23  GKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 82
Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLAD 130
           G+D  +L FS+    S++N L  W  E  +Y+        P V++G K D++E +     
Sbjct: 83  GSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQ----- 136
Query: 131 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
                 V+T + +   K  G   Y E S+K   NV A F+ A
Sbjct: 137 ------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEA 172

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DT GQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
           G  + L +WDTAGQE +N +    YR A   +L + +  + ++++ L KW+  +  Y S 
Sbjct: 72  GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASE 130
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
              ++LVG KLD   D+           +T  QGE+  +QI    + E S+K   NV  +
Sbjct: 131 DAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180
Query: 169 F 169
           F
Sbjct: 181 F 181

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ +++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 30  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 89
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL          P    V T Q ++L + 
Sbjct: 90  SFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT-VDTKQAQDLARS 137
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   +IE S+KT+Q V   F
Sbjct: 138 YGIP-FIETSAKTRQGVDDAF 157

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G    L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTA QE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTA QE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Query: 36  PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV 95
           PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  S+E++
Sbjct: 34  PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI 93
Query: 96  --LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
              ++ I  ++  S  VP+VLVG K DL               V + Q ++L +  G   
Sbjct: 94  HQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AARTVESRQAQDLARSYGIP- 140
Query: 154 YIECSSKTQQNVKAVF 169
           YIE S+KT+Q V+  F
Sbjct: 141 YIETSAKTRQGVEDAF 156

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  + F+  F++ +  
Sbjct: 47  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTK 106
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL          P    V T Q ++L + 
Sbjct: 107 SFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT-VDTKQAQDLARS 154
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   +IE S+KT+Q V   F
Sbjct: 155 YGIP-FIETSAKTRQGVDDAF 174

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + SY
Sbjct: 38  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESY 97
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            NV K+W+ E+  Y S  V  +LVG K DL   K        +V  TTA+  E    +G 
Sbjct: 98  ANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK--------VVDNTTAK--EFADSLGI 146
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 147 P-FLETSAKNATNVEQAF 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 42/181 (23%)
Query: 13  TQVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
            ++  F L +L  S+ G+SS +  ++   F  F  + +           + TTV   +WD
Sbjct: 2   NKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
           TAGQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
            DL        +E + Y  D+  L                   ++E S+KT  NV  +F 
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
           A
Sbjct: 162 A 162

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 27  GRSSIWD-YIPTVFDN----------FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           G+SS+ + Y+   FD            + ++  +G  V + +WDTAGQE +  LR   YR
Sbjct: 19  GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 78
Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLAD 130
           G+D  +L FS+    S++N L  W  E  +Y+        P V++G K+D+ E +     
Sbjct: 79  GSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ----- 132
Query: 131 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
                 V+T + +   +  G   Y E S+K   NV A F+ A
Sbjct: 133 ------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + SY
Sbjct: 38  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESY 97
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            NV K+W+ E+  Y S  V  +LVG K DL   K        +V  TTA+  E    +G 
Sbjct: 98  ANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK--------VVDNTTAK--EFADSLGI 146
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 147 P-FLETSAKNATNVEQAF 163

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 27  GRSSIWD-YIPTVFDN----------FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           G+SS+ + Y+   FD            + ++  +G  V + +WDTAGQE +  LR   YR
Sbjct: 21  GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 80
Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLAD 130
           G+D  +L FS+    S++N L  W  E  +Y+        P V++G K+D+ E +     
Sbjct: 81  GSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ----- 134
Query: 131 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
                 V+T + +   +  G   Y E S+K   NV A F+ A
Sbjct: 135 ------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 170

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13  TQVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
            ++  F L +L  S  G+SS +  ++   F  F  + +           + TTV   +WD
Sbjct: 3   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 60  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
           TAGQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K
Sbjct: 63  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 121
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
            DL        +E + Y  D+  L                   ++E S+KT  NV  +F 
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 162
Query: 171 A 171
           A
Sbjct: 163 A 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+ + +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13  TQVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
            ++  F L +L  S  G+SS +  ++   F  F  + +           + TTV   +WD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
           TAGQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
            DL        +E + Y  D+  L                   ++E S+KT  NV  +F 
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
           A
Sbjct: 162 A 162

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  + F+  F++ +  
Sbjct: 34  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTK 93
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   ++ I  ++  S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 94  SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 141
Query: 149 IGASYYIECSSKTQQNVKAVF 169
            G   YIE S+KT+Q V+  F
Sbjct: 142 YGIP-YIETSAKTRQGVEDAF 161

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13  TQVTSFLLYVLSVS--GRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
            ++  F L +L  S  G+SS +  ++   F  F  + +           + TTV   +WD
Sbjct: 2   NKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
           TAGQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
            DL        +E + Y  D+  L                   ++E S+KT  NV  +F 
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
           A
Sbjct: 162 A 162

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13  TQVTSFLLYVLSVS--GRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
            ++  F L +L  S  G+SS +  ++   F  F  + +           + TTV   +WD
Sbjct: 2   NKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
           TAGQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
            DL        +E + Y  D+  L                   ++E S+KT  NV  +F 
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
           A
Sbjct: 162 A 162

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13  TQVTSFLLYVLSVS--GRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
            ++  F L +L  S  G+SS +  ++   F  F  + +           + TTV   +WD
Sbjct: 2   NKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
           TAGQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
            DL        +E + Y  D+  L                   ++E S+KT  NV  +F 
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
           A
Sbjct: 162 A 162

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S+
Sbjct: 28  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 87
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            NV K+W+ E+  Y S  V  +LVG K DL   K        +V  TTA+  E    +G 
Sbjct: 88  NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 136
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 137 P-FLETSAKNATNVEQSF 153

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13  TQVTSFLLYVLSVS--GRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
            ++  F L +L  S  G+SS +  ++   F  F  + +           + TTV   +WD
Sbjct: 2   NKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
           TAGQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
            DL        +E + Y  D+  L                   ++E S+KT  NV  +F 
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
           A
Sbjct: 162 A 162

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 14/139 (10%)
Query: 34  YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           ++ TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + +  S+
Sbjct: 52  FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 111
Query: 93  ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            N ++ W  +++ YS     V+LVG K D+ E++        +VP  T +G+ L +Q+G 
Sbjct: 112 -NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER--------VVP--TEKGQLLAEQLGF 160
Query: 152 SYYIECSSKTQQNVKAVFD 170
            ++ E S+K   +V+  F+
Sbjct: 161 DFF-EASAKENISVRQAFE 178

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S+
Sbjct: 35  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 94
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            NV K+W+ E+  Y S  V  +LVG K DL   K        +V  TTA+  E    +G 
Sbjct: 95  NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 143
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 144 P-FLETSAKNATNVEQSF 160

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S+
Sbjct: 35  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 94
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            NV K+W+ E+  Y S  V  +LVG K DL   K        +V  TTA+  E    +G 
Sbjct: 95  NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 143
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 144 P-FLETSAKNATNVEQSF 160

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Query: 12  ATQVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLW 58
           A+++  F L +L  S  G+SS +  ++   F  +  + +           + TTV   +W
Sbjct: 3   ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 59  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 117
           DTAGQE Y+ L P+ YRGA   ++ + + ++ ++    K W+ ELQ   SP + + L G 
Sbjct: 63  DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAGN 121
Query: 118 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
           K DL   +        +V    AQ       +    ++E S+KT  NV  +F
Sbjct: 122 KADLANKR--------MVEYEEAQAYADDNSL---LFMETSAKTAMNVNDLF 162

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 13/121 (10%)
Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
           G  VNL +WDTAGQE ++ L P+ YR ++  +L + +    S++ V K W+ EL+     
Sbjct: 52  GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGN 110
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
            + + +VG K+DL +++H          V+  + E   + +GA +Y   S+K  + ++ +
Sbjct: 111 EICLCIVGNKIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEEL 159
Query: 169 F 169
           F
Sbjct: 160 F 160

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 14/140 (10%)
Query: 34  YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I TV  +F   V+  +G  V L +WDTAGQE +  +    YR A   +L + + ++AS+
Sbjct: 40  FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF 99
Query: 93  ENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           +N+ + W+ E+  Y+   V ++L+G K+D   ++           V    GE+L K+ G 
Sbjct: 100 DNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHER----------VVKREDGEKLAKEYGL 148
Query: 152 SYYIECSSKTQQNVKAVFDA 171
             ++E S+KT  NV   F A
Sbjct: 149 P-FMETSAKTGLNVDLAFTA 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS+    
Sbjct: 40  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 99
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+      ++ I  ++     VP +LVG K DL EDK         V V  A+    R +
Sbjct: 100 SFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQ-------VSVEEAKN---RAE 147
Query: 149 IGASYYIECSSKTQQNVKAVF 169
                Y+E S+KT+ NV  VF
Sbjct: 148 QWNVNYVETSAKTRANVDKVF 168

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S+
Sbjct: 45  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 104
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            NV K+W+ E+  Y S  V  +LVG K DL   K        +V  TTA+  E    +G 
Sbjct: 105 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 153
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 154 P-FLETSAKNATNVEQSF 170

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 13/121 (10%)
Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
           G  VNL +WDTAGQE ++ L P+ YR ++  +L + +    S++ V K W+ EL+     
Sbjct: 52  GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGN 110
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
            + + +VG K+DL +++H          V+  + E   + +GA +Y   S+K  + ++ +
Sbjct: 111 EICLCIVGNKIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEEL 159
Query: 169 F 169
           F
Sbjct: 160 F 160

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 49  EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYS 107
           +G T+   +WDTAGQE Y R+    YRGA   +L + +    +YENV ++W+ EL+ H  
Sbjct: 50  DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHAD 108
Query: 108 PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167
             + ++LVG K DLR        H   VP   A+    +  +    +IE S+    NV+ 
Sbjct: 109 SNIVIMLVGNKSDLR--------HLRAVPTDEARAFAEKNNLS---FIETSALDSTNVEE 157
Query: 168 VF 169
            F
Sbjct: 158 AF 159

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S+
Sbjct: 54  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 113
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            NV K+W+ E+  Y S  V  +LVG K DL   K        +V  TTA+  E    +G 
Sbjct: 114 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 162
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 163 P-FLETSAKNATNVEQSF 179

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 13/121 (10%)
Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
           G  VNL +WDTAGQE ++ L P+ YR ++  +L + +    S++ V K W+ EL+     
Sbjct: 66  GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGN 124
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
            + + +VG K+DL +++H          V+  + E   + +GA +Y   S+K  + ++ +
Sbjct: 125 EICLCIVGNKIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEEL 173
Query: 169 F 169
           F
Sbjct: 174 F 174

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS+    
Sbjct: 44  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 103
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+      ++ I  ++     VP +LVG K DL EDK         V V  A+    R +
Sbjct: 104 SFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQ-------VSVEEAKN---RAE 151
Query: 149 IGASYYIECSSKTQQNVKAVF 169
                Y+E S+KT+ NV  VF
Sbjct: 152 QWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS+    
Sbjct: 32  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 91
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+      ++ I  ++     VP +LVG K DL EDK         V V  A+    R +
Sbjct: 92  SFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQ-------VSVEEAKN---RAE 139
Query: 149 IGASYYIECSSKTQQNVKAVF 169
                Y+E S+KT+ NV  VF
Sbjct: 140 QWNVNYVETSAKTRANVDKVF 160

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S+
Sbjct: 45  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 104
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            NV K+W+ E+  Y S  V  +LVG K DL   K        +V  TTA+  E    +G 
Sbjct: 105 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 153
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 154 P-FLETSAKNATNVEQSF 170

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S+
Sbjct: 37  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 96
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            NV K+W+ E+  Y S  V  +LVG K DL   K        +V  TTA+  E    +G 
Sbjct: 97  NNV-KQWLQEIDRYASENVNKLLVGIKCDLTTKK--------VVDYTTAK--EFADSLGI 145
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 146 P-FLETSAKNATNVEQSF 162

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S+
Sbjct: 62  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 121
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            NV K+W+ E+  Y S  V  +LVG K DL   K        +V  TTA+  E    +G 
Sbjct: 122 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 170
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 171 P-FLETSAKNATNVEQSF 187

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 29/135 (21%)
Query: 46  VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ- 104
           V  + TTV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++    K W+ ELQ 
Sbjct: 45  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQR 103
Query: 105 HYSPGVPVVLVGTKLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156
             SP + + L G K DL        +E + Y  D+  L                   ++E
Sbjct: 104 QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL-------------------FME 144
Query: 157 CSSKTQQNVKAVFDA 171
            S+KT  NV  +F A
Sbjct: 145 TSAKTAMNVNEIFMA 159

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 45  NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
           ++  +G T+   +WDTAGQE Y  +    YRGA   +L + +    +YENV ++W+ EL+
Sbjct: 61  SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 119
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
            H    + ++LVG K DLR        H   VP  T +     ++ G S +IE S+    
Sbjct: 120 DHADSNIVIMLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 168
Query: 164 NVKAVF 169
           NV+A F
Sbjct: 169 NVEAAF 174

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 29/135 (21%)
Query: 46  VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ- 104
           V  + TTV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++    K W+ ELQ 
Sbjct: 47  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQR 105
Query: 105 HYSPGVPVVLVGTKLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156
             SP + + L G K DL        +E + Y  D+  L                   ++E
Sbjct: 106 QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL-------------------FME 146
Query: 157 CSSKTQQNVKAVFDA 171
            S+KT  NV  +F A
Sbjct: 147 TSAKTAMNVNEIFMA 161

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS+    
Sbjct: 30  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 89
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+      ++ I  ++     VP +LVG K DL EDK         V V  A+    +  
Sbjct: 90  SFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQ-------VSVEEAKNRADQWN 140
Query: 149 IGASYYIECSSKTQQNVKAVF 169
           +    Y+E S+KT+ NV  VF
Sbjct: 141 VN---YVETSAKTRANVDKVF 158

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 42/181 (23%)
Query: 13  TQVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
            ++  F L +L  S  G+SS +  ++   F  F  + +           + TTV   +WD
Sbjct: 3   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 60  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
           TAGQE Y+ L P  YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K
Sbjct: 63  TAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 121
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
            DL        +E + Y  D+  L                   + E S+KT  NV  +F 
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLL-------------------FXETSAKTSXNVNEIFX 162
Query: 171 A 171
           A
Sbjct: 163 A 163

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 45  NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
           ++  +G T+   +WDTAGQE Y  +    YRGA   +L + +    +YENV ++W+ EL+
Sbjct: 70  SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 128
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
            H    + ++LVG K DLR        H   VP  T +     ++ G S +IE S+    
Sbjct: 129 DHADSNIVIMLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 177
Query: 164 NVKAVF 169
           NV+A F
Sbjct: 178 NVEAAF 183

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 34  YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I T+  +F    V   G  V L LWDTAGQE +  +    YRGA   +L + +    ++
Sbjct: 49  FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTF 108
Query: 93  ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            N+ K+W   + +H +    ++LVG K D+               VT  QGE L K++G 
Sbjct: 109 TNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-----------VVTADQGEALAKELGI 156
Query: 152 SYYIECSSKTQQNVKAVF 169
             +IE S+K   NV  +F
Sbjct: 157 P-FIESSAKNDDNVNEIF 173

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 34  YIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           ++ TV  +F    +      + L +WDTAGQE Y  +    YRGA  F+L + + +  S+
Sbjct: 34  FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 93
Query: 93  ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            N ++ W  +++ YS     V+LVG K D+ +++           V++ +G +L   +G 
Sbjct: 94  -NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER----------VVSSERGRQLADHLGF 142
Query: 152 SYYIECSSKTQQNVKAVFD 170
            ++ E S+K   NVK  F+
Sbjct: 143 EFF-EASAKDNINVKQTFE 160

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 34  YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I T+  +F    V   G  V L LWDTAGQE +  +    YRGA   +L + +    ++
Sbjct: 36  FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTF 95
Query: 93  ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            N+ K+W   + +H +    ++LVG K D+               VT  QGE L K++G 
Sbjct: 96  TNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-----------VVTADQGEALAKELGI 143
Query: 152 SYYIECSSKTQQNVKAVF 169
             +IE S+K   NV  +F
Sbjct: 144 P-FIESSAKNDDNVNEIF 160

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 34  YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I T+  +F    V   G  V L +WDTAGQE +  +    YRGA   +L + +    ++
Sbjct: 32  FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTF 91
Query: 93  ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            N+ K+W   + +H +    ++LVG K D+               VT  QGE L K++G 
Sbjct: 92  TNI-KQWFKTVNEHANDEAQLLLVGNKSDME-----------TRVVTADQGEALAKELGI 139
Query: 152 SYYIECSSKTQQNVKAVF 169
             +IE S+K   NV  +F
Sbjct: 140 P-FIESSAKNDDNVNEIF 156

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 13/121 (10%)
Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
           G  V L +WDTAGQE +  +    YR A+  +L + +    S+   L +W+ E++ Y S 
Sbjct: 72  GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASN 130
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
            V  VLVG K+DL E +           V+  + EE   +    YY+E S+K   NV+ +
Sbjct: 131 KVITVLVGNKIDLAERRE----------VSQQRAEEF-SEAQDMYYLETSAKESDNVEKL 179
Query: 169 F 169
           F
Sbjct: 180 F 180

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 40  DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
           D  S  +  E  TV L LWDTAGQE +  L P   R + V V+ + + +  S++    KW
Sbjct: 38  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKW 96
Query: 100 IPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158
           I +++      V ++LVG K DL + +           +T  +GE+  K++    +IE S
Sbjct: 97  IDDVRTERGSDVIIMLVGNKTDLADKRQ----------ITIEEGEQRAKELSV-MFIETS 145
Query: 159 SKTQQNVKAVF 169
           +KT  NVK +F
Sbjct: 146 AKTGYNVKQLF 156

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 16/142 (11%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           IW+Y PT+   +      +   V++ + DTAGQED  + R    R  + FVL + +  R 
Sbjct: 54  IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRG 112
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E V  LK  + E++     V ++LVG K DL        DH     V+T +GE+L  +
Sbjct: 113 SFEEVLPLKNILDEIKK-PKNVTLILVGNKADL--------DHSR--QVSTEEGEKLATE 161
Query: 149 IGASYYIECSSKT-QQNVKAVF 169
           +  ++Y ECS+ T + N+  +F
Sbjct: 162 LACAFY-ECSACTGEGNITEIF 182

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 34  YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I T+  +F    V   G  V L LWDTAGQE +  +    YRGA   +L + +    ++
Sbjct: 32  FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTF 91
Query: 93  ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            N+ K+W   + +H +    ++LVG K D                VT  QGE L K++G 
Sbjct: 92  TNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-----------TRVVTADQGEALAKELGI 139
Query: 152 SYYIECSSKTQQNVKAVF 169
             +IE S+K   NV  +F
Sbjct: 140 P-FIESSAKNDDNVNEIF 156

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 42/180 (23%)
Query: 14  QVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWDT 60
           ++  F L +L  S  G+SS +  ++   F  F  + +           + TTV   +WDT
Sbjct: 2   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 61
Query: 61  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKL 119
           AG E Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K 
Sbjct: 62  AGLERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKA 120
Query: 120 DL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 171
           DL        +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFMA 161

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 34  YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I T+  +F    V   G  V L +WDTAGQE +  +    YRGA   +L + +    ++
Sbjct: 32  FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTF 91
Query: 93  ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            N+ K+W   + +H +    ++LVG K D                VT  QGE L K++G 
Sbjct: 92  TNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-----------TRVVTADQGEALAKELGI 139
Query: 152 SYYIECSSKTQQNVKAVF 169
             +IE S+K   NV  +F
Sbjct: 140 P-FIESSAKNDDNVNEIF 156

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 14/136 (10%)
Query: 36  PTVFDNFSANVVAEGTTVNLGL-WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN 94
           PT+  +F    V  G  ++  L WDTAGQE ++ L P+ YRG+   V+ + +  + S+  
Sbjct: 54  PTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF-Y 112
Query: 95  VLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
            LKKW+ EL+ + P  + + + G K DL + +         VP+  A+  E  + IGA  
Sbjct: 113 TLKKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDAK--EYAESIGA-I 161
Query: 154 YIECSSKTQQNVKAVF 169
            +E S+K   N++ +F
Sbjct: 162 VVETSAKNAINIEELF 177

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 45  NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
           ++  +G T+   +WDTAG E Y  +    YRGA   +L + +    +YENV ++W+ EL+
Sbjct: 49  SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 107
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
            H    + ++LVG K DLR        H   VP  T +     ++ G S +IE S+    
Sbjct: 108 DHADSNIVIMLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 156
Query: 164 NVKAVF 169
           NV+A F
Sbjct: 157 NVEAAF 162

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAG EDY  +R   +R  + F+  FS+    
Sbjct: 32  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEME 91
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+      ++ I  ++     VP +LVG K DL EDK         V V  A+    R +
Sbjct: 92  SFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQ-------VSVEEAKN---RAE 139
Query: 149 IGASYYIECSSKTQQNVKAVF 169
                Y+E S+KT+ NV  VF
Sbjct: 140 QWNVNYVETSAKTRANVDKVF 160

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 34  YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           ++ TV  +F    V      + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+
Sbjct: 51  FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESF 110
Query: 93  ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
             V + W  +++ YS     V+LVG K DL +++        +VP     G  L   +G 
Sbjct: 111 AAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER--------VVP--AEDGRRLADDLGF 159
Query: 152 SYYIECSSKTQQNVKAVFD 170
            ++ E S+K   NVK VF+
Sbjct: 160 EFF-EASAKENINVKQVFE 177

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGV 110
           V+L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV + W+ +LQ   Y    
Sbjct: 84  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENP 142
Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV-KAV 168
            +VL+G K DL          P    V   Q  EL  + G  Y+ E S+ T QNV KAV
Sbjct: 143 DIVLIGNKADL----------PDQREVNERQARELADKYGIPYF-ETSAATGQNVEKAV 190

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 45  NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
           ++  +G T+   +WDTAG E Y  +    YRGA   +L + +    +YENV ++W+ EL+
Sbjct: 46  SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 104
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
            H    + + LVG K DLR        H   VP  T +     ++ G S +IE S+    
Sbjct: 105 DHADSNIVIXLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 153
Query: 164 NVKAVF 169
           NV+A F
Sbjct: 154 NVEAAF 159

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 45  NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
           ++  +G T+   +WDTAG E Y  +    YRGA   +L + +    +YENV ++W+ EL+
Sbjct: 52  SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 110
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
            H    + + LVG K DLR        H   VP  T +     ++ G S +IE S+    
Sbjct: 111 DHADSNIVIXLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 159
Query: 164 NVKAVF 169
           NV+A F
Sbjct: 160 NVEAAF 165

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 29/139 (20%)
Query: 42  FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP 101
            +  V  + TTV   +WDTAG E Y+ L P+ YRGA   ++ + + +  ++    K W+ 
Sbjct: 43  LTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVK 101
Query: 102 ELQ-HYSPGVPVVLVGTKLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ELQ   SP + + L G K DL        +E + Y  D+  L                  
Sbjct: 102 ELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL------------------ 143
Query: 153 YYIECSSKTQQNVKAVFDA 171
            ++E S+KT  NV  +F A
Sbjct: 144 -FMETSAKTAMNVNEIFMA 161

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 45  NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
           ++  +G T+   +WDTAG E Y  +    YRGA   +L + +    +YENV ++W+ EL+
Sbjct: 70  SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 128
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
            H    + ++LVG K DLR        H   VP  T +     ++ G S +IE S+    
Sbjct: 129 DHADSNIVIMLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 177
Query: 164 NVKAVF 169
           NV+A F
Sbjct: 178 NVEAAF 183

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 40  DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
           D  S  +  E  TV L LWDTAGQE +  L P   R + V V+ + + +  S+     KW
Sbjct: 50  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKW 108
Query: 100 IPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158
           I +++      V ++LVG K DL + +           V+T +GE   K++    +IE S
Sbjct: 109 IDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETS 157
Query: 159 SKTQQNVKAVF 169
           +K   NVK +F
Sbjct: 158 AKAGYNVKQLF 168

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 6   KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 65
           KL  L +  V    L V  V G   +  Y PT+ D++   V  +     L + DTAG E 
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQG-IFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQ 65
Query: 66  YNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRE 123
           +  +R L  +    F L +S+ +++++ ++  L++ I  ++  +  VP++LVG K DL +
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLED 124
Query: 124 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
           ++           V   QG+ L +Q     ++E S+K++ NV  +F
Sbjct: 125 ER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I T+  +F    +  +G  + L +WDTAGQE +  +    YRGA   +L + + +  S+
Sbjct: 35  FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 94
Query: 93  ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           +N+ + WI  + +H S  V  +++G K D+ + +           V+  +GE+L    G 
Sbjct: 95  DNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI 143
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 144 K-FMETSAKANINVENAF 160

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 13/138 (9%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y PT+ D++   V  +     L + DTAG E +  +R L  +    F L +S+ +++++ 
Sbjct: 32  YDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFN 91
Query: 94  NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           ++  L++ I  ++  +  VP++LVG K DL +++           V   QG+ L +Q   
Sbjct: 92  DLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNN 140
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K++ NV  +F
Sbjct: 141 CAFLESSAKSKINVNEIF 158

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I T+  +F    +  +G  + L +WDTAGQE +  +    YRGA   +L + + +  S+
Sbjct: 37  FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 96
Query: 93  ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           +N+ + WI  + +H S  V  +++G K D+ + +           V+  +GE+L    G 
Sbjct: 97  DNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI 145
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K   NV+  F
Sbjct: 146 K-FMETSAKANINVENAF 162

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT+ D+++     +G    L + DTAGQE++  +R    R    F+L F++  R 
Sbjct: 35  VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ 94
Query: 91  SYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           S+  V K +   L+       PVVLVG K DL   +         VP + A         
Sbjct: 95  SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VPRSEASA------F 140
Query: 150 GASY---YIECSSKTQQNVKAVFD 170
           GAS+   Y E S+K + NV   F+
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFE 164

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S+
Sbjct: 27  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 86
Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDL 121
            NV K+W+ E+  Y S  V  +LVG K DL
Sbjct: 87  NNV-KQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 33  DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           DYI T+  +F    V  +G TV L +WDTAGQE +  +    YRG+   ++ + +  + S
Sbjct: 36  DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 95
Query: 92  YENVLKKWIPELQHYSPG-VPVVLVGTKLDLREDK 125
           + N +K W+ E+  Y+   V  +LVG K DL++ +
Sbjct: 96  F-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y PT+ D++   V  +     L + DTAG E +  +R L  +    F L +S+ +++++
Sbjct: 31  EYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF 90
Query: 93  ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
            ++  L++ I  ++  +  VP++LVG K DL +++           V   QG+ L +Q  
Sbjct: 91  NDLQDLREQILRVKD-TEDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWC 139
Query: 151 ASYYIECSSKTQQNVKAVF 169
              ++E S+K++ NV  +F
Sbjct: 140 NCAFLESSAKSKINVNEIF 158

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 33  DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           DYI T+  +F    V  +G TV L +WDTAGQE +  +    YRG+   ++ + +  + S
Sbjct: 36  DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 95
Query: 92  YENVLKKWIPELQHYSPG-VPVVLVGTKLDLREDK 125
           + N +K W+ E+  Y+   V  +LVG K DL++ +
Sbjct: 96  F-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGV 110
           V+L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W+ +LQ   Y    
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENP 128
Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 166
            +VL+G K DL          P    V   Q  EL ++ G  Y+ E S+ T QNV+
Sbjct: 129 DIVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 13/138 (9%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           Y PT+ D++   V  +     L + DTAG E +  +R L  +    F L +S+ +++++ 
Sbjct: 32  YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFN 91
Query: 94  NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           ++  L++ I  ++  +  VP++LVG K DL +++           V   QG+ L +Q   
Sbjct: 92  DLQDLREQILRVKD-TEDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWCN 140
Query: 152 SYYIECSSKTQQNVKAVF 169
             ++E S+K++ NV  +F
Sbjct: 141 CAFLESSAKSKINVNEIF 158

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGV 110
           V+L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +LQ   Y    
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENP 128
Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 166
            +VL+G K DL          P    V   Q  EL ++ G  Y+ E S+ T QNV+
Sbjct: 129 DIVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 33  DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           DYI T+  +F    V  +G TV L +WDTAGQE +  +    YRG+   ++ + +  + S
Sbjct: 49  DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 108
Query: 92  YENVLKKWIPELQHYSPG-VPVVLVGTKLDLREDK 125
           + N +K W+ E+  Y+   V  +LVG K DL++ +
Sbjct: 109 F-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 142

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 40  DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
           D  S  +  E  TV L LWDTAGQE +  L P   R + V V+ + + +  S++    KW
Sbjct: 37  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKW 95
Query: 100 IPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158
           I +++      V ++LVG K DL + +           V+  +GE   K++    +IE S
Sbjct: 96  IDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETS 144
Query: 159 SKTQQNVKAVF 169
           +K   NVK +F
Sbjct: 145 AKAGYNVKQLF 155

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGV 110
           V+L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W+ +LQ   Y    
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENP 128
Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 166
            +VL+G K DL          P    V   Q  EL ++ G  Y+ E S+ T QNV+
Sbjct: 129 DIVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 37  TVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV 95
           T+   F A +V  +G  + L +WDTAGQE +  +    YRGA   +L + +  R ++ N 
Sbjct: 53  TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NH 111
Query: 96  LKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154
           L  W+ +  QH S  + ++L+G K DL   +           V   +GE   ++ G   +
Sbjct: 112 LTSWLEDARQHSSSNMVIMLIGNKSDLESRR----------DVKREEGEAFAREHGL-IF 160
Query: 155 IECSSKTQQNVKAVF 169
           +E S+KT  NV+  F
Sbjct: 161 METSAKTACNVEEAF 175

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGV 110
           V+L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +LQ   Y    
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENP 128
Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 166
            +VL+G K DL          P    V   Q  EL ++ G  Y+ E S+ T QNV+
Sbjct: 129 DIVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           DY  T+  D     +      V L LWDTAGQE+++ +    YRGA   VL FS   R S
Sbjct: 33  DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES 92
Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           +E  +  W  ++      +P  LV  K+DL +D            +   + E L K++  
Sbjct: 93  FE-AISSWREKVVAEVGDIPTALVQNKIDLLDDS----------CIKNEEAEGLAKRLKL 141
Query: 152 SYYIECSSKTQQNVKAVF 169
            +Y   S K   NV  VF
Sbjct: 142 RFY-RTSVKEDLNVSEVF 158

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 34  YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           YI T+  +F    V   G  V L +WDTAGQE +  +    YRG    ++ + + S  S+
Sbjct: 38  YITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESF 97
Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
            NV K+W+ E+      V  +LVG K           D P    V T    +   Q+G  
Sbjct: 98  VNV-KRWLHEINQNCDDVCRILVGNK----------NDDPERKVVETEDAYKFAGQMGIQ 146
Query: 153 YYIECSSKTQQNVKAVFD 170
            + E S+K   NV+ +F+
Sbjct: 147 LF-ETSAKENVNVEEMFN 163

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 34  YIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           ++ TV  +F    +      + L +WDTAG E Y  +    YRGA  F+L + + +  S+
Sbjct: 37  FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESF 96
Query: 93  ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            N ++ W  +++ YS     V+LVG K D  +++           V++ +G +L   +G 
Sbjct: 97  -NAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER----------VVSSERGRQLADHLGF 145
Query: 152 SYYIECSSKTQQNVKAVFD 170
            ++ E S+K   NVK  F+
Sbjct: 146 EFF-EASAKDNINVKQTFE 163

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 37  TVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV 95
           T+   F A ++  +G  + L +WDTAGQE +  +    YRGA   +L + +  R ++ N 
Sbjct: 42  TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NH 100
Query: 96  LKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154
           L  W+ +  QH +  + ++L+G K DL   +           V   +GE   ++ G   +
Sbjct: 101 LTTWLEDARQHSNSNMVIMLIGNKSDLESRR----------EVKKEEGEAFAREHGL-IF 149
Query: 155 IECSSKTQQNVKAVF 169
           +E S+KT  NV+  F
Sbjct: 150 METSAKTASNVEEAF 164

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 11/136 (8%)
Query: 36  PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN 94
           PT+   F +  V     TV   +WDTAGQE +  L P  YR A   ++ + +    S+  
Sbjct: 34  PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIK 93
Query: 95  VLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
             + W+ EL +  S  + + LVG K+D  ++        G   V   +GE+L ++ G  +
Sbjct: 94  A-RHWVKELHEQASKDIIIALVGNKIDXLQE-------GGERKVAREEGEKLAEEKGLLF 145
Query: 154 YIECSSKTQQNVKAVF 169
           + E S+KT +NV  VF
Sbjct: 146 F-ETSAKTGENVNDVF 160

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 27  GRSSI-WDYIPTVFD-NFSANVVAEGTTVNLG---------LWDTAGQEDYNRLRPLSYR 75
           G+SSI W ++   FD N +  + A   T  +          +WDTAGQE +  L P+ YR
Sbjct: 17  GKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYR 76
Query: 76  GADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134
           G+   ++ + +    ++ + LK W+ EL QH  P + V + G K DL + +         
Sbjct: 77  GSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE-------- 127
Query: 135 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
             V     ++    I A  ++E S+K   N+  +F
Sbjct: 128 --VMERDAKDYADSIHA-IFVETSAKNAININELF 159

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 17/144 (11%)
Query: 34  YIPTVFDNF-SANVVAEGTTV-NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           Y  T+  +F +  V  +G  V  + +WDTAGQE +  L    YRGAD  VL + + + +S
Sbjct: 37  YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS 96
Query: 92  YENVLKKWIPE-LQHY---SPGV-PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           +EN+ K W  E L H    SP   P V++G K+D  E K  +++            +EL 
Sbjct: 97  FENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS---------AQELA 146
Query: 147 KQIGASYYIECSSKTQQNVKAVFD 170
           K +G       S+K   NV   F+
Sbjct: 147 KSLGDIPLFLTSAKNAINVDTAFE 170

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 33  DYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           D   T+   F + VV   G TV L +WDTAGQE +  +    YRGA   +L + + SR +
Sbjct: 53  DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET 112
Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           Y N L  W+ + +   SP + V+L G K DL  ++        L     AQ  EL     
Sbjct: 113 Y-NSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF----LEASRFAQENEL----- 162
Query: 151 ASYYIECSSKTQQNVKAVF 169
              ++E S+ T +NV+  F
Sbjct: 163 --MFLETSALTGENVEEAF 179

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 40  DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
           D  S  +  E  T+ L LWDTAGQE +  L P   R +   V+ + + +  S++    KW
Sbjct: 42  DFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKW 100
Query: 100 IPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158
           I +++      V ++LVG K DL + +           V+  +GE   K++    +IE S
Sbjct: 101 IDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETS 149
Query: 159 SKTQQNVKAVF 169
           +K   NVK +F
Sbjct: 150 AKAGYNVKQLF 160

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 49  EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS- 107
           +G  V L +WDTAGQE +  +    YR A+  +LA+ +  R+S+ +V   WI +++ Y+ 
Sbjct: 74  QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAG 132
Query: 108 PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167
             +  +L+G K DL E          L  V+ A+ + L +       IE S+K   NV+ 
Sbjct: 133 SNIVQLLIGNKSDLSE----------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182
Query: 168 VF 169
            F
Sbjct: 183 AF 184

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSPGVP 111
           V L LWDTAGQE +  L P   R +   ++ + + +R S+EN   KWI + L      V 
Sbjct: 50  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVI 108
Query: 112 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
           + LVG K DL +          L  VT  +G +  ++    ++ E S+K   N+K +F
Sbjct: 109 IALVGNKTDLGD----------LRKVTYEEGXQKAQEYNTXFH-ETSAKAGHNIKVLF 155

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 46  VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH 105
            V  G  ++L LWDTAG E +  L    +R A  F+L F L +  S+ NV + WI +LQ 
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQM 121
Query: 106 --YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
             YS    +VL G K DL + +           V   +  EL ++ G  Y+ E S+    
Sbjct: 122 HAYSENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIPYF-ETSAANGT 170
Query: 164 NV 165
           N+
Sbjct: 171 NI 172

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-P 108
           G  + L +WDTAGQE +  +    YRGA   ++ + +  R++Y N L  W+ + ++ + P
Sbjct: 61  GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNP 119
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
              ++L+G K DL   +           VT  + ++  ++ G   ++E S+KT +NV+  
Sbjct: 120 NTVIILIGNKADLEAQR----------DVTYEEAKQFAEENGL-LFLEASAKTGENVEDA 168
Query: 169 F 169
           F
Sbjct: 169 F 169

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 39  FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKK 98
            D  S  +  E  TV L LWDTAG E +  L P   R + V V+ + + +  S++    K
Sbjct: 41  IDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-K 99
Query: 99  WIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157
           WI +++      V ++LVG K DL + +           V+  +GE   K++    +IE 
Sbjct: 100 WIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIET 148
Query: 158 SSKTQQNVKAVF 169
           S+K   NVK +F
Sbjct: 149 SAKAGYNVKQLF 160

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 11  FATQVTSFLLYVL---SVSGRSSIWDYIPTVFDN----------FSANVVAEGTTVNLGL 57
           F   +  F L  L   SV   S I  ++   FDN           S  +  E  TV L L
Sbjct: 10  FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 69
Query: 58  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVG 116
           WDTAG E +  L P   R + V V+ + + +  S++    KWI +++      V ++LVG
Sbjct: 70  WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVG 128
Query: 117 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
            K DL + +           V+  +GE   K++    +IE S+K   NVK +F
Sbjct: 129 NKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 170

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 27  GRSSI-WDYIPTVFD-NFSANVVAEGTTVNLG---------LWDTAGQEDYNRLRPLSYR 75
           G+SSI W ++   FD N +  + A   T  +          +WDTAG E +  L P+ YR
Sbjct: 18  GKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR 77
Query: 76  GADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134
           G+   ++ + +    ++ + LK W+ EL QH  P + V + G K DL + +         
Sbjct: 78  GSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE-------- 128
Query: 135 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
             V     ++    I A  ++E S+K   N+  +F
Sbjct: 129 --VMERDAKDYADSIHA-IFVETSAKNAININELF 160

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           YIPTV D +   +  + +   L + DT G   +  ++ LS      F+L +S+ SR S E
Sbjct: 32  YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLE 91
Query: 94  NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            +  + + I E++     +P++LVG K D    +           V +++ E L +    
Sbjct: 92  ELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC 141
Query: 152 SYYIECSSKTQQNVKAVF 169
           + ++E S+K   NVK +F
Sbjct: 142 A-FMETSAKLNHNVKELF 158

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 46  VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH 105
           +  +G    L +WDTAGQE +  L P  YRGA   +L + +  R ++   L  W+ EL+ 
Sbjct: 57  ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK-LDNWLNELET 115
Query: 106 YSPGVPVV--LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
           Y     +V  LVG K+D +E++           V   +G +  ++  +  +IE S+KT  
Sbjct: 116 YCTRNDIVNXLVGNKID-KENRE----------VDRNEGLKFARK-HSXLFIEASAKTCD 163
Query: 164 NVKAVFD 170
            V+  F+
Sbjct: 164 GVQCAFE 170

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           I  Y PT+ D +   +  + +   L + DTAG E +  +R L  +    F+L +SLV++ 
Sbjct: 29  IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ 88
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 121
           S++++  ++  I  ++ Y   VPV+LVG K+DL
Sbjct: 89  SFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDL 120

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 9/160 (5%)
Query: 7   LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 66
           LA   A   +SFL+ +     R +I   +   F      ++ +G    L LWDTAGQE +
Sbjct: 33  LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ--MKTLIVDGERTVLQLWDTAGQERF 90
Query: 67  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDK 125
             +    +R AD  +L + +    S+ N+ ++W+  ++  +   VP++LVG K D+R+  
Sbjct: 91  RSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRD-- 147
Query: 126 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 165
              A   G   V    GE+L    GA  + E S+K   N+
Sbjct: 148 --TAATEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNI 184

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE Y  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 59  IKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY PT+ D++  +   +     L + DTAGQE+++ +R    R  D F++ +S+  +AS+
Sbjct: 41  DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 100
Query: 93  ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           E+V    + I  ++      P++LV  K+DL            L  VT  QG+E+  +  
Sbjct: 101 EHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LRKVTRDQGKEMATKYN 149
Query: 151 ASYYIECSSK 160
              YIE S+K
Sbjct: 150 IP-YIETSAK 158

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY PT+ D++  +   +     L + DTAGQE+++ +R    R  D F++ +S+  +AS+
Sbjct: 46  DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 105
Query: 93  ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           E+V    + I  ++      P++LV  K+DL            L  VT  QG+E+  +  
Sbjct: 106 EHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LRKVTRDQGKEMATKYN 154
Query: 151 ASYYIECSSK 160
              YIE S+K
Sbjct: 155 IP-YIETSAK 163

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
           G  V L +WDTAGQE +  +    YRGA   +L + + SR +Y N L  W+ + +   S 
Sbjct: 56  GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQ 114
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
            + ++L G K DL  D+        L     AQ  EL        ++E S+ T +NV+  
Sbjct: 115 NIVIILCGNKKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGENVEEA 163
Query: 169 F 169
           F
Sbjct: 164 F 164

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 33  DYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           D   T+   FS   V  GT  V   +WDTAG E Y  +    YRGA   +L F L    +
Sbjct: 38  DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT 97
Query: 92  YENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR-------EDKHYLADHPGLVPVTTA 140
           Y  V+++W+ EL  H    + V+LVG K DL        E+    A++ GL+ + T+
Sbjct: 98  YA-VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETS 153

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 11  FATQVTSFLLYVL---SVSGRSSIWDYIPTVFDN----------FSANVVAEGTTVNLGL 57
           F   +  F L  L   SV   S I  ++   FDN           S  +  E  T+ L L
Sbjct: 7   FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQL 66
Query: 58  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVG 116
           WDTAG E +  L P   R +   V+ + + +  S++    KWI +++      V ++LVG
Sbjct: 67  WDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVG 125
Query: 117 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
            K DL + +           V+  +GE   K++    +IE S+K   NVK +F
Sbjct: 126 NKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 167

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 33  DYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           D   T+   FS   V  GT  V   +WDTAG E Y  +    YRGA   +L F L    +
Sbjct: 53  DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT 112
Query: 92  YENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR-------EDKHYLADHPGLVPVTTA 140
           Y  V+++W+ EL  H    + V+LVG K DL        E+    A++ GL+ + T+
Sbjct: 113 YA-VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETS 168

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y PT+ D++  +   +     L + DTAGQE+++ +R    R  D F++ +S+  +AS+
Sbjct: 46  EYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 105
Query: 93  ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           E+V    + I  ++      P++LV  K+DL            L  VT  QG+E+  +  
Sbjct: 106 EHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LRKVTRDQGKEMATKYN 154
Query: 151 ASYYIECSSK 160
              YIE S+K
Sbjct: 155 IP-YIETSAK 163

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-P 108
           G  + L +WDTAGQ  +  +    YRGA   ++ + +  R++Y N L  W+ + ++ + P
Sbjct: 76  GQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNP 134
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
              ++L+G K DL   +           VT  + ++  ++ G   ++E S+KT +NV+  
Sbjct: 135 NTVIILIGNKADLEAQR----------DVTYEEAKQFAEENGL-LFLEASAKTGENVEDA 183
Query: 169 F 169
           F
Sbjct: 184 F 184

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 52  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 110
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 111 VLCGNKVDIKDRK 123

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 57  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLV 115
           +WDTAGQE Y  +    YRGA   +L + +  + S+EN+ +KW+ EL+ +    + ++LV
Sbjct: 61  IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLV 119
Query: 116 GTKLDLR 122
           G K DL+
Sbjct: 120 GNKSDLK 126

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 122
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 123 VLCGNKVDIKDRK 135

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 122
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 123 VLCGNKVDIKDRK 135

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY-RGADVFVLAFSLVSRASY 92
           Y PTV + +S  V       +L L DTAGQ++Y+ L P S+  G   +VL +S+ S  S+
Sbjct: 53  YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSF 111
Query: 93  ENVLKKWIPELQ--HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           + V++    +L   H    VPVVLVG K DL  ++           V   +G++L +  G
Sbjct: 112 Q-VIESLYQKLHEGHGKTRVPVVLVGNKADLSPER----------EVQAVEGKKLAESWG 160
Query: 151 ASYYIECSSKTQQNVKAVF 169
           A+ ++E S++  Q  + +F
Sbjct: 161 AT-FMESSARENQLTQGIF 178

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++  +   +     L + DTAGQE+++ +R    R  D F++ +S+  +A
Sbjct: 44  VPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA 103
Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E+V    + I  ++      P++LV  K+DL            L  VT  QG+E+  +
Sbjct: 104 SFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LRKVTRDQGKEMATK 152
Query: 149 IGASYYIECSSK 160
                YIE S+K
Sbjct: 153 YNIP-YIETSAK 163

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
           YIPT+ D +   +  + +   L + DT G   +  ++ LS      F+L FS+ S+ S E
Sbjct: 37  YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLE 96
Query: 94  NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
            +  + K I +++     +PV+LVG K D  + +           V T + + + ++   
Sbjct: 97  ELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC 145
Query: 152 SYYIECSSKTQQNVKAVF 169
           + ++E S+K   NVK +F
Sbjct: 146 A-FMETSAKMNYNVKELF 162

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
           G  V L +WDTAGQE +  +    YRGA   +L + + SR +Y N L  W+ + +   S 
Sbjct: 57  GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQ 115
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
            + ++L G K DL  D+        L     AQ  EL        ++E S+ T ++V+  
Sbjct: 116 NIVIILCGNKKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGEDVEEA 164
Query: 169 F 169
           F
Sbjct: 165 F 165

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 49  EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYS 107
           EG  +   +WDTAGQE Y  +    YRGA   ++ + +   +SYEN    W+ EL ++  
Sbjct: 58  EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENAD 116
Query: 108 PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167
             V V L+G K DL     +L   P     T AQ  +L        + E S+   +NV  
Sbjct: 117 DNVAVGLIGNKSDLA----HLRAVPTEESKTFAQENQL-------LFTETSALNSENVDK 165
Query: 168 VFD 170
            F+
Sbjct: 166 AFE 168

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAG E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 53  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPI 111
Query: 113 VLVGTKLDLREDK 125
           VL G K+D++E K
Sbjct: 112 VLCGNKVDVKERK 124

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAG E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 54  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPI 112
Query: 113 VLVGTKLDLREDK 125
           VL G K+D++E K
Sbjct: 113 VLCGNKVDVKERK 125

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 32/142 (22%)
Query: 35  IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN 94
           I    +N++ N+      +   +WDTAGQE Y  + PL YRGA   ++ F  +S ++  +
Sbjct: 79  ITNQHNNYNENLC----NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLD 133
Query: 95  VLKKWIPELQHYSPGVPVVLVGTKL-------DLREDKHYLADHPGLVPVTTAQGEELRK 147
             K W+ +L+  S    ++LV  K+       D+ E + Y  D+  L             
Sbjct: 134 RAKTWVNQLK-ISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL------------- 179
Query: 148 QIGASYYIECSSKTQQNVKAVF 169
                 +I+ S+KT  N+K +F
Sbjct: 180 ------FIQTSAKTGTNIKNIF 195

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAG E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 61  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPI 119
Query: 113 VLVGTKLDLREDK 125
           VL G K+D++E K
Sbjct: 120 VLCGNKVDVKERK 132

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAGQE +  L    Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 59  IKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAG E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 61  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 119
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 120 VLCGNKVDIKDRK 132

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAG E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 55  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 113
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 114 VLCGNKVDIKDRK 126

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
           +   +WDTAG E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 59  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
           VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 49  EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYS 107
           E   +   +WDTAG E Y  +    YRGA   ++ + +   +SYEN    W+ EL ++  
Sbjct: 55  ENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLTELRENAD 113
Query: 108 PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167
             V V L+G K DL         H   VP   A+   +  Q+    + E S+    NV  
Sbjct: 114 DNVAVGLIGNKSDLA--------HLRAVPTDEAKNFAMENQM---LFTETSALNSDNVDK 162
Query: 168 VF 169
            F
Sbjct: 163 AF 164

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
           G  V L +WDTAG E +  +    YRGA   +L + + SR +Y N L  W+ + +   S 
Sbjct: 54  GKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQ 112
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
            + ++L G K DL  D+        L     AQ  EL        ++E S+ T ++V+  
Sbjct: 113 NIVIILCGNKKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGEDVEEA 161
Query: 169 F 169
           F
Sbjct: 162 F 162

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 40  DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
           D  +  V+ +   V + +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W
Sbjct: 44  DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSW 102
Query: 100 IPE-LQHYSP----GVPVVLVGTKLDL 121
             E L   SP      P V++G K+DL
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDL 129

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 40  DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
           D  +  V+ +   V + +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W
Sbjct: 44  DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSW 102
Query: 100 IPE-LQHYSP----GVPVVLVGTKLDL 121
             E L   SP      P V++G K+DL
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDL 129

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 49  EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YS 107
           +G  +   +WDTAGQE    L+ + Y GA   +L F + SR + +N L +W+ E Q    
Sbjct: 57  QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQN-LARWVKEFQAVVG 115
Query: 108 PGVPVVLVGTKLDLR 122
              P+V+   K+D++
Sbjct: 116 NEAPIVVCANKIDIK 130

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 49  EGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY- 106
           +G  + + LWDTAGQE + + +    YR     V  + + + AS+ + L  WI E + + 
Sbjct: 65  DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS-LPAWIEECKQHL 123
Query: 107 -SPGVPVVLVGTKLDLR 122
            +  +P +LVG K DLR
Sbjct: 124 LANDIPRILVGNKCDLR 140

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 40  DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
           D  +  V+ +   V + +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W
Sbjct: 44  DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSW 102
Query: 100 IPE-LQHYSP----GVPVVLVGTKLDL 121
             E L   SP      P V++G K+D 
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDF 129

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 49  EGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY- 106
           +G  + + LWDTAGQE + + +    YR     V  +   + AS+ + L  WI E + + 
Sbjct: 74  DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHS-LPAWIEECKQHL 132
Query: 107 -SPGVPVVLVGTKLDLR 122
            +  +P +LVG K DLR
Sbjct: 133 LANDIPRILVGNKCDLR 149

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 40  DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
           D  +  V+ +   V + +WDTAG E +  L    YRGAD  VL F + +  +++  L  W
Sbjct: 44  DFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSW 102
Query: 100 IPE-LQHYSP----GVPVVLVGTKLDL 121
             E L   SP      P V++G K+DL
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDL 129

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 26/144 (18%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV--FVLAFSLVSRAS 91
           Y PT+ + F+  +   G   +L L DTAGQ++Y+ + P +Y   D+  ++L +S+ S  S
Sbjct: 30  YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKS 87
Query: 92  YENV------LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145
           +E +      L   + ++Q     +P++LVG K DL  ++           ++  +G+ L
Sbjct: 88  FEVIKVIHGKLLDMVGKVQ-----IPIMLVGNKKDLHMER----------VISYEEGKAL 132
Query: 146 RKQIGASYYIECSSKTQQNVKAVF 169
            +   A+ ++E S+K  Q    VF
Sbjct: 133 AESWNAA-FLESSAKENQTAVDVF 155

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 26/144 (18%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV--FVLAFSLVSRAS 91
           Y PT+ + F+  +   G   +L L DTAGQ++Y+ + P +Y   D+  ++L +S+ S  S
Sbjct: 35  YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKS 92
Query: 92  YENV------LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145
           +E +      L   + ++Q     +P++LVG K DL  ++           ++  +G+ L
Sbjct: 93  FEVIKVIHGKLLDMVGKVQ-----IPIMLVGNKKDLHMER----------VISYEEGKAL 137
Query: 146 RKQIGASYYIECSSKTQQNVKAVF 169
            +   A+ ++E S+K  Q    VF
Sbjct: 138 AESWNAA-FLESSAKENQTAVDVF 160

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 24/143 (16%)
Query: 34  YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR-GADVFVLAFSLVSRASY 92
           Y PT+ + F+  +   G   +L L DTAGQ++Y+ + P +Y    + ++L +S+ S  S+
Sbjct: 35  YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSF 93
Query: 93  ENV------LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           E +      L   + ++Q     +P++LVG K DL  ++           ++  +G+ L 
Sbjct: 94  EVIKVIHGKLLDMVGKVQ-----IPIMLVGNKKDLHMER----------VISYEEGKALA 138
Query: 147 KQIGASYYIECSSKTQQNVKAVF 169
           +   A+ ++E S+K  Q    VF
Sbjct: 139 ESWNAA-FLESSAKENQTAVDVF 160

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 26/142 (18%)
Query: 36  PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYE 93
           PT+ + F+  +   G   +L L DTAGQ++Y+ + P +Y   D+  ++L +S+ S  S+E
Sbjct: 35  PTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE 92
Query: 94  NV------LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147
            +      L   + ++Q     +P++LVG K DL  ++           ++  +G+ L +
Sbjct: 93  VIKVIHGKLLDMVGKVQ-----IPIMLVGNKKDLHMER----------VISYEEGKALAE 137
Query: 148 QIGASYYIECSSKTQQNVKAVF 169
              A+ ++E S+K  Q    VF
Sbjct: 138 SWNAA-FLESSAKENQTAVDVF 158

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 40  DNFSANVVAEG---TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL 96
           D +   ++ +G   T + L +W+  G+ ++  L     +  D +++ +S+  RAS+E   
Sbjct: 43  DTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKAS 100
Query: 97  KKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155
           +  I       +  +P++LVG K DL   +         V V+  +   +   +    +I
Sbjct: 101 ELRIQLRRARQTEDIPIILVGNKSDLVRXRE--------VSVSEGRAXAV---VFDXKFI 149
Query: 156 ECSSKTQQNVKAVFDA 171
           E S+  Q NVK +F+ 
Sbjct: 150 ETSAAVQHNVKELFEG 165

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 40  DNFSANVVAEG---TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL 96
           D +   ++ +G   T + L +W+  G+ ++  L     +  D +++ +S+  RAS+E   
Sbjct: 43  DTYERTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKAS 100
Query: 97  KKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155
           +  I       +  +P++LVG K DL   +         V V+  +   +   +    +I
Sbjct: 101 ELRIQLRRARQTEDIPIILVGNKSDLVRXRE--------VSVSEGRAXAV---VFDCKFI 149
Query: 156 ECSSKTQQNVKAVFDA 171
           E S+  Q NVK +F+ 
Sbjct: 150 ETSAAVQHNVKELFEG 165

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           D IPTV   F+   V +G  V + +WD  GQ  +  +     RG +  V       R   
Sbjct: 50  DMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKI 106
Query: 93  E-------NVLKKWIPELQHYSPGVPVVLVGTKLDL 121
           E       N+L K  P+LQ    G+PV+++G K DL
Sbjct: 107 EASRNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 40  DNFSANVVAEG---TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL 96
           D +   ++ +G   T + L +W+  G+ ++  L     +  D +++ +S+  RAS+E   
Sbjct: 43  DTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKAS 100
Query: 97  KKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155
           +  I       +  +P++LVG K DL   +           V+ ++G      +    +I
Sbjct: 101 ELRIQLRRARQTEDIPIILVGNKSDLVRCR----------EVSVSEGRAC-AVVFDCKFI 149
Query: 156 ECSSKTQQNVKAVFDA 171
           E S+  Q NVK +F+ 
Sbjct: 150 ETSAAVQHNVKELFEG 165

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 40  DNFSANVVAEG---TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL 96
           D +   ++ +G   T + L +W+  G+ ++  L     +  D +++ +S+  RAS+E   
Sbjct: 74  DTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKAS 131
Query: 97  KKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155
           +  I       +  +P++LVG K DL   +           V+ ++G      +    +I
Sbjct: 132 ELRIQLRRARQTEDIPIILVGNKSDLVRCR----------EVSVSEGRAC-AVVFDCKFI 180
Query: 156 ECSSKTQQNVKAVFDA 171
           E S+  Q NVK +F+ 
Sbjct: 181 ETSAAVQHNVKELFEG 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-90
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-85
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-85
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	3e-84
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-83
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-83
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-81
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	4e-81
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	9e-79
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-78
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-78
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	9e-78
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-76
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-76
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-38
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-37
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	4e-37
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	7e-37
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-36
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-35
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-34
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-34
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-34
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-34
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	4e-34
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-34
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-33
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-33
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-32
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-32
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	7e-31
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-30
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	6e-30
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	7e-30
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-29
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-29
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-29
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	4e-29
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-29
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	8e-29
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	9e-29
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-28
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-28
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	5e-28
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	6e-28
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-28
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-27
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-27
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-27
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	4e-27
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-27
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	8e-27
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-26
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-26
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-26
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-26
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-26
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-26
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	4e-26
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	4e-26
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	5e-26
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	6e-26
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	6e-26
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	6e-26
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-26
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	7e-26
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	7e-26
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	8e-26
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-25
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-25
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-25
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-25
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-25
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	5e-25
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	7e-25
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	8e-25
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	9e-25
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-24
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-24
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	5e-24
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	7e-24
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	7e-24
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-21
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-21
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-12
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-09
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	3e-05
3llu_A	196	RAS-related GTP-binding protein C; structural geno	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  263 bits (675), Expect = 1e-90
 Identities = 122/173 (70%), Positives = 147/173 (84%), Gaps = 7/173 (4%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DYIPTVFDNFSANV  +G  VNLGLWDTAGQEDY+RLRPLSYRGAD+FVLAFSL+S+ASY
Sbjct: 37  DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASY 96

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENVLKKW+PEL+ ++P VP+VLVGTKLDLR+DK YLADH     +T+ QGEELRKQIGA+
Sbjct: 97  ENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTN--VITSTQGEELRKQIGAA 154

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ----KEKKKKQRGCLL-NVFCG 200
            YIECSSKTQQNVKAVFD AIKVV++PP+++    + K  ++ GC + ++ CG
Sbjct: 155 AYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIASIVCG 207

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  250 bits (640), Expect = 1e-85
 Identities = 118/147 (80%), Positives = 134/147 (91%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           DY+PTVFDNFSANVV  G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 36  DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 95

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           ENV KKWIPEL+HY+PGVP+VLVGTKLDLR+DK +  DHPG VP+TT QGEEL+K IGA 
Sbjct: 96  ENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKP 179
            YIECSSK+Q+NVK VFDAAI+VV++P
Sbjct: 156 AYIECSSKSQENVKGVFDAAIRVVLQP 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  248 bits (636), Expect = 6e-85
 Identities = 60/152 (39%), Positives = 90/152 (59%), Gaps = 8/152 (5%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
            Y+PTVF+NFS  +  +     L LWDTAGQE+Y+RLRPLSY  +DV +L F++ +R S+
Sbjct: 51  AYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSF 110

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
           +N+  KW PE++HY      VLVG K+DLR+D            VT  +G++L +++G  
Sbjct: 111 DNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS--------DDVTKQEGDDLCQKLGCV 162

Query: 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
            YIE SS  +  +  VF+ ++  +       K
Sbjct: 163 AYIEASSVAKIGLNEVFEKSVDCIFSNKPVPK 194

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  247 bits (633), Expect = 3e-84
 Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 2/153 (1%)

Query: 32  WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
             Y PTVF+ +  N+  +G  V+L +WDTAGQ+DY+RLRPL Y  A V +L F + S  S
Sbjct: 61  ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS 120

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQI 149
           ++N+  +W PE+ H+   VP+++VG K DLR+DK  +      GL PVT  +G+E+ + +
Sbjct: 121 FDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 182
           GA  Y+ECS++   NV AVF  A +V +    +
Sbjct: 181 GAVAYLECSARLHDNVHAVFQEAAEVALSSRGR 213

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  245 bits (628), Expect = 1e-83
 Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
              Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  
Sbjct: 51  PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD 110

Query: 91  SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP--GLVPVTTAQGEELRKQ 148
           S EN+ +KW+PE++H+ P VP++LV  K DLR D+H   +       PV T  G  +  +
Sbjct: 111 SLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVR 170

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
           I A  Y+ECS+KT++ V+ VF+ A +  ++     +
Sbjct: 171 IQAYDYLECSAKTKEGVREVFETATRAALQKRYGSQ 206

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  244 bits (624), Expect = 4e-83
 Identities = 74/154 (48%), Positives = 104/154 (67%), Gaps = 2/154 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPT FDNFSA V  +G  V L L DTAGQ+++++LRPL Y   D+F+L FS+VS +S+
Sbjct: 48  EYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSF 107

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           +NV +KW+PE++ + P  P++LVGT+ DLRED   L   D     PV     + L ++I 
Sbjct: 108 QNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
           A+ YIECS+ TQ+N+K VFDAAI   I+    Q+
Sbjct: 168 AASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQ 201

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  240 bits (613), Expect = 2e-81
 Identities = 87/147 (59%), Positives = 111/147 (75%), Gaps = 2/147 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 58  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 118 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVI 177
           A  Y+ECS+ TQ+ +K VFD AI+ V+
Sbjct: 178 AVKYLECSALTQRGLKTVFDEAIRAVL 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  239 bits (611), Expect = 4e-81
 Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 2/149 (1%)

Query: 32  WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
             Y+PTVF+N+ A++  +G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S
Sbjct: 52  EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS 111

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQI 149
            EN+ +KW PE++H+ P VP++LVG K DLR+D+H   +       PV + +G ++  +I
Sbjct: 112 LENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIK 178
            A  Y+ECS+KT++ V+ VF+ A +  ++
Sbjct: 172 SAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  233 bits (596), Expect = 9e-79
 Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 3/149 (2%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + 
Sbjct: 56  NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 115

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ++VLKKW  E+Q + P   ++LVG K DLR D   L +  +    PV+  QG  + KQIG
Sbjct: 116 DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175

Query: 151 ASYYIECSSKTQQN-VKAVFDAAIKVVIK 178
           A+ YIECS+   +N V+ +F  A    + 
Sbjct: 176 AATYIECSALQSENSVRDIFHVATLACVN 204

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  231 bits (592), Expect = 2e-78
 Identities = 89/154 (57%), Positives = 114/154 (74%), Gaps = 2/154 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DV ++ FSLVS AS+
Sbjct: 33  EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 92

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 93  ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
           A  Y+ECS+ TQ+ +K VFD AI+ V+ PP  +K
Sbjct: 153 AVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 186

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  236 bits (604), Expect = 2e-78
 Identities = 86/150 (57%), Positives = 111/150 (74%), Gaps = 2/150 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +YIPTVFDN+SANV+ +G  VNLGLWDTAG EDY+RLRPLSY   DVF++ FSLVS AS+
Sbjct: 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
            +V  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IG
Sbjct: 243 HHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180
           A  Y+ECS+ TQ+ +K VFD AI+ V+ PP
Sbjct: 303 AVKYLECSALTQRGLKTVFDEAIRAVLCPP 332

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  230 bits (588), Expect = 9e-78
 Identities = 74/149 (49%), Positives = 109/149 (73%), Gaps = 2/149 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFD+++ +V   G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+V+ AS+
Sbjct: 46  EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASF 105

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
           +NV ++W+PEL+ Y+P VP +L+GT++DLR+D   LA  +     P+   QG++L K+IG
Sbjct: 106 QNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKP 179
           A  Y+ECS+ TQ+ +K VFD AI  ++ P
Sbjct: 166 ACCYVECSALTQKGLKTVFDEAIIAILTP 194

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  227 bits (580), Expect = 1e-76
 Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 3/149 (2%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + 
Sbjct: 35  NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 94

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ++VLKKW  E+Q + P   ++LVG K DLR D   L +  +    PV+  QG  + KQIG
Sbjct: 95  DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154

Query: 151 ASYYIECSSKTQQN-VKAVFDAAIKVVIK 178
           A+ YIECS+   +N V+ +F  A    + 
Sbjct: 155 AATYIECSALQSENSVRDIFHVATLACVN 183

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  227 bits (581), Expect = 2e-76
 Identities = 55/158 (34%), Positives = 87/158 (55%), Gaps = 3/158 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
            Y+PTVF+N++A +  E   V L LWDT+G   Y+ +RPL Y  +D  +L F +    + 
Sbjct: 55  TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETV 114

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
           ++ LKKW  E+  Y P   V+L+G K DLR D   L +  H    P++  QG  + KQ+G
Sbjct: 115 DSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174

Query: 151 ASYYIECSSKTQQ-NVKAVFDAAIKVVIKPPQKQKEKK 187
           A  Y+E S+ T + ++ ++F  A  + +  P    +K 
Sbjct: 175 AEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPLPQKS 212

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  130 bits (328), Expect = 3e-38
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 18/167 (10%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
              Y PTV + +S  V       +L L DTAGQ++Y+ L      G   +VL +S+ S  
Sbjct: 50  SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH 109

Query: 91  SYENVLKKWIPEL--QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S++ + +    +L   H    VPVVLVG K DL  ++           V   +G++L + 
Sbjct: 110 SFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAES 158

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLL 195
            GA+ ++E S++  Q  + +F   I+ +     + +    ++R C L
Sbjct: 159 WGAT-FMESSARENQLTQGIFTKVIQEI----ARVENSYGQERRCHL 200

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  128 bits (323), Expect = 2e-37
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 28/179 (15%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
              YIPT+ D +   +  + +   L + DT G   +  ++ LS      F+L FS+ S+ 
Sbjct: 34  RDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQ 93

Query: 91  SYENV--LKKWIPELQHYSPGVPVVLVGTKLDL--REDKHYLADHPGLVPVTTAQGEELR 146
           S E +  + K I +++     +PV+LVG K D   RE             V T + + + 
Sbjct: 94  SLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-------------VDTREAQAVA 140

Query: 147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVI----------KPPQKQKEKKKKQRGCLL 195
           ++   + ++E S+K   NVK +F   + +            K   KQK   + +  C L
Sbjct: 141 QEWKCA-FMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCTL 198

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  126 bits (319), Expect = 4e-37
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 20/172 (11%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 30  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 89

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++   +  +++    S  VP+VLVG K DL               V T Q ++L + 
Sbjct: 90  SFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARS 137

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK-----PPQKQKEKKKKQRGCLL 195
            G   +IE S+KT+Q V   F   ++ + K         +K+KKK +  C++
Sbjct: 138 YGIP-FIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVI 188

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  125 bits (317), Expect = 7e-37
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 14/160 (8%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           +  Y PT+ + F+  +   G   +L L DTAGQ++Y+          + ++L +S+ S  
Sbjct: 32  VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK 91

Query: 91  SYENVLKKWIPEL--QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E + K    +L        +P++LVG K DL  ++           ++  +G+ L + 
Sbjct: 92  SFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAES 140

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKK 188
             A+ ++E S+K  Q    VF   I    K      + K 
Sbjct: 141 WNAA-FLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  124 bits (314), Expect = 5e-36
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 26/179 (14%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS+    
Sbjct: 40  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 99

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+      +  ++        VP +LVG K DL + +           V+  + +   +Q
Sbjct: 100 SFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQ 148

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK------------PPQKQKEKKKKQRGCLL 195
              + Y+E S+KT+ NV  VF   ++ +                +K   K+ ++R C+L
Sbjct: 149 WNVN-YVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCCIL 206

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  121 bits (307), Expect = 2e-35
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 15/151 (9%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
              YIPTV D +   +  + +   L + DT G   +  ++ LS      F+L +S+ SR 
Sbjct: 29  RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQ 88

Query: 91  SYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147
           S E + K    ++         +P++LVG K D    +           V +++ E L +
Sbjct: 89  SLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALAR 137

Query: 148 QIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
               + ++E S+K   NVK +F   + +  +
Sbjct: 138 TWKCA-FMETSAKLNHNVKELFQELLNLEKR 167

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  119 bits (300), Expect = 2e-34
 Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 14/150 (9%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           I  Y PT+ D +   +  + +   L + DTAG E +  +R L  +    F+L +SLV++ 
Sbjct: 29  IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ 88

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S++++ K    ++        VPV+LVG K+DL  ++           V++++G  L ++
Sbjct: 89  SFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEE 137

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
            G   ++E S+K++  V  +F   ++ +  
Sbjct: 138 WGCP-FMETSAKSKTMVDELFAEIVRQMNY 166

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  119 bits (301), Expect = 2e-34
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS+    
Sbjct: 44  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 103

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+      +  ++        VP +LVG K DL + +           V+  + +   +Q
Sbjct: 104 SFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQ 152

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              + Y+E S+KT+ NV  VF   ++ +  
Sbjct: 153 WNVN-YVETSAKTRANVDKVFFDLMREIRA 181

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  118 bits (299), Expect = 3e-34
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 15/150 (10%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +  PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++  ++  +++    S  VP+VLVG K DL               V + Q ++L + 
Sbjct: 89  SFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARS 136

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
            G   YIE S+KT+Q V+  F   ++ + +
Sbjct: 137 YGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  119 bits (300), Expect = 3e-34
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 14/156 (8%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT+ D+++     +G    L + DTAGQE++  +R    R    F+L F++  R 
Sbjct: 35  VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ 94

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+  V  K   ++         PVVLVG K DL   +           V  ++       
Sbjct: 95  SFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGAS 143

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
              + Y E S+K + NV   F+  ++ V K  +++ 
Sbjct: 144 HHVA-YFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  119 bits (300), Expect = 4e-34
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 47  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK 106

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+ ++   +  +++    S  VP+VLVG K DL               V T Q  EL K 
Sbjct: 107 SFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKS 154

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 183
            G   +IE S+KT+Q V+  F   ++ + +   K+
Sbjct: 155 YGIP-FIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  118 bits (298), Expect = 5e-34
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS+    
Sbjct: 30  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 89

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+      +  ++        VP +LVG K DL + +           V+  + +    Q
Sbjct: 90  SFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQ 138

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              + Y+E S+KT+ NV  VF   ++ +  
Sbjct: 139 WNVN-YVETSAKTRANVDKVFFDLMREIRA 167

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  116 bits (293), Expect = 2e-33
 Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 14/150 (9%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
                      +  ++V +G   +L ++D   Q+    L        D +V+ +S+  + 
Sbjct: 27  DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG 86

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E    +   +L+    +  VP++LVG K DL   +           V+  +G      
Sbjct: 87  SFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVV 135

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
                +IE S+    NV+A+F+  ++ +  
Sbjct: 136 FDCK-FIETSAALHHNVQALFEGVVRQIRL 164

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  116 bits (292), Expect = 3e-33
 Identities = 35/150 (23%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           +  Y PT+ D++   V  +     L + DTAG E +  +R L  +    F L +S+ +++
Sbjct: 29  VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS 88

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           ++ ++ +    ++     +  VP++LVG K DL +++           V   QG+ L +Q
Sbjct: 89  TFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQ 137

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
                ++E S+K++ NV  +F   ++ + +
Sbjct: 138 WCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  114 bits (289), Expect = 1e-32
 Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 15/151 (9%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT+ D++  +   +     L + DTAGQE+++ +R    R  D F++ +S+  +A
Sbjct: 44  VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA 103

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E+V  ++   +         P++LV  K+DL   +           VT  QG+E+  +
Sbjct: 104 SFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATK 152

Query: 149 IGASYYIECSSKT-QQNVKAVFDAAIKVVIK 178
                YIE S+K    NV   F   ++V+ +
Sbjct: 153 YNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  114 bits (288), Expect = 2e-32
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 16/156 (10%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           IW+Y PT+   +      +   V++ + DTAGQED    R    R  + FVL + +  R 
Sbjct: 54  IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRG 112

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E V       L        V ++LVG K DL   +           V+T +GE+L  +
Sbjct: 113 SFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATE 161

Query: 149 IGASYYIECSSKTQQ-NVKAVFDAAIKVVIKPPQKQ 183
           +  + + ECS+ T + N+  +F    + V +    Q
Sbjct: 162 LACA-FYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  110 bits (278), Expect = 7e-31
 Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 18/153 (11%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           I +Y P + D +S+    +   V+L + DTA  +   R        A  F++ +S+ SR 
Sbjct: 47  ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP-RNCERYLNWAHAFLVVYSVDSRQ 105

Query: 91  SYENVLKKWIPELQHY----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           S+++    ++  L  +       +P +L+G KLD+ + +           VT A+G  L 
Sbjct: 106 SFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALA 154

Query: 147 KQIGASYYIECSSKTQ-QNVKAVFDAAIKVVIK 178
            + G  ++ E S+    ++V+ VF  A++   +
Sbjct: 155 GRFGCLFF-EVSACLDFEHVQHVFHEAVREARR 186

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  108 bits (273), Expect = 5e-30
 Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 20/159 (12%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGL---WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR 89
           D      D +   ++ +G +  + L   W+  G+ ++  L     +  D +++ +S+  R
Sbjct: 67  DCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDR 124

Query: 90  ASYENVLKKWIPELQ--HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147
           AS+E    +   +L+    +  +P++LVG K DL   +           V+ ++G     
Sbjct: 125 ASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAV 173

Query: 148 QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEK 186
                 +IE S+  Q NVK +F+  ++  ++  +  KEK
Sbjct: 174 VFDCK-FIETSAAVQHNVKELFEGIVR-QVRLRRDSKEK 210

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  108 bits (272), Expect = 6e-30
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 16/143 (11%)

Query: 31  IWDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDY-NRLRPLSYRGADVFVLAFSLVS 88
              + P    D +   ++ +   V L ++D   Q D    LR    +  D F++ FS+  
Sbjct: 49  DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTD 108

Query: 89  RASYENVLKKWIPELQ--HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           R S+  V  + +  L+       +PV+LVG K DL   +           V+  +G  L 
Sbjct: 109 RRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLA 157

Query: 147 KQIGASYYIECSSKTQQNVKAVF 169
             +    +IE S+    N + +F
Sbjct: 158 GTLSCK-HIETSAALHHNTRELF 179

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  108 bits (271), Expect = 7e-30
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 17/150 (11%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +  P     F   +V +G +  L + D  G  +            D  V  FSL    
Sbjct: 46  VQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI 99

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S++ V   +   L  +  +  VP+VLVGT+  +               +  ++  +L   
Sbjct: 100 SFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAANP--------RVIDDSRARKLSTD 150

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
           +    Y E  +    NV+ VF    + V+ 
Sbjct: 151 LKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  107 bits (269), Expect = 1e-29
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 24/166 (14%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE--DYNRLRPLSYRGADVFVLAFSLVS 88
              +     D +   +  +G    L + DT   E  D +  +    +G   +V+ +S+  
Sbjct: 30  RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIAD 89

Query: 89  RASYENVLKKWIPEL--QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           R S+E+   +   +L   H +  VP++LVG K DL   +           V+  +G    
Sbjct: 90  RGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACA 138

Query: 147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRG 192
                  +IE S+  Q NV  +F+  ++ +          +++   
Sbjct: 139 VVFDCK-FIETSATLQHNVAELFEGVVRQL--------RLRRRDSA 175

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  106 bits (268), Expect = 1e-29
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 13/147 (8%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           DY  T+  D     +      V L LWDTAGQE+++ +    YRGA   VL FS   R S
Sbjct: 33  DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES 92

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           +E +   W  ++      +P  LV  K+DL +D            +   + E L K++  
Sbjct: 93  FEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL 141

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVIK 178
             +   S K   NV  VF    +  ++
Sbjct: 142 R-FYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  106 bits (267), Expect = 2e-29
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 16/143 (11%)

Query: 31  IWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFVLAFSLVS 88
              +     ++     ++ +   V L ++D   Q D    L+    +  D F++ FS+  
Sbjct: 28  DHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTD 87

Query: 89  RASYENVLKKWIPELQ--HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           R S+  V  + +  L+       +PV+LVG K DL   +           V+  +G  L 
Sbjct: 88  RRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLA 136

Query: 147 KQIGASYYIECSSKTQQNVKAVF 169
             +    +IE S+    N + +F
Sbjct: 137 GTLSCK-HIETSAALHHNTRELF 158

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  106 bits (266), Expect = 4e-29
 Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 19/165 (11%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGL---WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR 89
           D      D +   ++ +G +  + L   W+  G+ ++  L     +  D +++ +S+  R
Sbjct: 36  DXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDR 93

Query: 90  ASYENVLKKWIPELQ--HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147
           AS+E    +   +L+    +  +P++LVG K DL   +           V+ ++G     
Sbjct: 94  ASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAV 142

Query: 148 QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRG 192
                 +IE S+  Q NVK +F+  ++ V      +++ +++   
Sbjct: 143 VFDXK-FIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAY 186

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  105 bits (264), Expect = 5e-29
 Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 22/158 (13%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
               T  + +   ++ +G T  + + + AG  D           AD  +  FSL    S+
Sbjct: 34  VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSF 88

Query: 93  ENVLKKWIPELQHY----SPGVPVVLVGT--KLDLREDKHYLADHPGLVPVTTAQGEELR 146
           +  + +   +L         G+ + LVGT  ++     +           V  A+   L 
Sbjct: 89  QA-VSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPR----------VVGDARARALX 137

Query: 147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
             +    Y E  +    NV  VF    + V+   ++Q+
Sbjct: 138 ADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQ 175

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  105 bits (264), Expect = 8e-29
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 13/157 (8%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            YI T+  D     V   G  V L +WDTAGQE +  +    YRG    ++ + + S  S
Sbjct: 37  SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES 96

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           + NV K+W+ E+      V  +LVG K D  E K           V T    +   Q+G 
Sbjct: 97  FVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI 145

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKK 188
               E S+K   NV+ +F+   ++V++  +    K++
Sbjct: 146 Q-LFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 181

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  105 bits (265), Expect = 9e-29
 Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 35/183 (19%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            Y  T+  D  S  +  E  TV L LWDTAG E +  L P   R + V V+ + + +  S
Sbjct: 44  TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNS 103

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           ++    KWI +++      V ++LVG K DL + +           V+  +GE   K++ 
Sbjct: 104 FQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELN 152

Query: 151 ASYYIECSSKTQQNVKAVF------------------DAAIKVVIKPPQKQKEKKKKQRG 192
              +IE S+K   NVK +F                  +  I + ++ PQ+Q   +    G
Sbjct: 153 VM-FIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEG---G 208

Query: 193 CLL 195
           CLL
Sbjct: 209 CLL 211

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  105 bits (263), Expect = 3e-28
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 15/152 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            Y+ T+  +            +   +WDTAGQE +  LR   Y  A   ++ F + SR +
Sbjct: 43  KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT 102

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           Y+NV   W  +L      +P+VL G K+D+++ K              A+     ++   
Sbjct: 103 YKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK------------VKAKSIVFHRKKNL 149

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 183
            YY + S+K+  N +  F    + +I  P  +
Sbjct: 150 QYY-DISAKSNYNFEKPFLWLARKLIGDPNLE 180

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  103 bits (260), Expect = 4e-28
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
               T+  D     +  +G  V L +WDTAGQE +  +    YR A+  +LA+ +  R+S
Sbjct: 57  RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS 116

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           + +V   WI +++ Y    +  +L+G K DL E +           V+ A+ + L +   
Sbjct: 117 FLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYD 165

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
               IE S+K   NV+  F      +I 
Sbjct: 166 ILCAIETSAKDSSNVEEAFLRVATELIM 193

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  102 bits (257), Expect = 5e-28
 Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 14/148 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            +I T+     +  +   G  VNL +WDTAGQE ++ L P+ YR ++  +L + +    S
Sbjct: 34  KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS 93

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           ++ V K W+ EL+      + + +VG K+DL +++H          V+  + E   + +G
Sbjct: 94  FQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVG 142

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
           A  +   S+K  + ++ +F    K +I+
Sbjct: 143 A-KHYHTSAKQNKGIEELFLDLCKRMIE 169

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  102 bits (258), Expect = 6e-28
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
               T+    FS  +     TV   +WDTAGQE Y+ L P+ YRGA   ++ F + ++AS
Sbjct: 40  FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS 99

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +E   KKW+ ELQ   +P + + L G K DL + +           VT    +   ++ G
Sbjct: 100 FERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENG 148

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 183
             +++E S+KT  NVK +F    + + +    +
Sbjct: 149 L-FFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  103 bits (260), Expect = 6e-28
 Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 15/162 (9%)

Query: 33  DYIPT--VFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           +Y  T    ++    +  +G  +   +WDTAGQE    L+ + Y GA   +L F + SR 
Sbjct: 39  NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRI 98

Query: 91  SYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           + +N+  +W+ E Q       P+V+   K+D++  +           ++     E+ K  
Sbjct: 99  TCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGK 147

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQR 191
              Y+ E S+KT  N    F    ++    P           
Sbjct: 148 NYEYF-EISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLE 188

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  101 bits (255), Expect = 1e-27
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 14/139 (10%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            Y  T+  D  S  +  E  TV L LWDTAGQE +  L P   R + V V+ + + +  S
Sbjct: 42  TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS 101

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +     KWI +++      V ++LVG K DL + +           V+T +GE   K++ 
Sbjct: 102 FHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELN 150

Query: 151 ASYYIECSSKTQQNVKAVF 169
              +IE S+K   NVK +F
Sbjct: 151 V-MFIETSAKAGYNVKQLF 168

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  101 bits (253), Expect = 3e-27
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
               T+     +  V  + TTV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  S
Sbjct: 34  FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +    K W+ ELQ   SP + + L G K DL   +           V   + +       
Sbjct: 94  FARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNS 142

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              ++E S+KT  NV  +F A  K + K
Sbjct: 143 L-LFMETSAKTSMNVNEIFMAIAKKLPK 169

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  101 bits (254), Expect = 3e-27
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +   T+  D     ++ +G    L LWDTAGQE +  +    +R AD  +L + +    S
Sbjct: 56  NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS 115

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           + N+ ++W+  ++      VP++LVG K D+R+             V    GE+L    G
Sbjct: 116 FLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQK----CVPGHFGEKLAMTYG 170

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
           A  + E S+K   N+        + V K
Sbjct: 171 AL-FCETSAKDGSNIVEAVLHLAREVKK 197

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  101 bits (253), Expect = 4e-27
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 15/154 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +  PT+     +  V          +WDTAGQE ++ L P+ YRG+   V+ + +  + S
Sbjct: 51  NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS 110

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +  + KKW+ EL+ +    + + + G K DL + +           V     +E  + IG
Sbjct: 111 FYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIG 159

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
           A   +E S+K   N++ +F    +  I P    +
Sbjct: 160 A-IVVETSAKNAINIEELFQGISR-QIPPLDPHE 191

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  100 bits (252), Expect = 4e-27
 Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 15/168 (8%)

Query: 19  LLYVLSVSGRSSIWDYIPTVFDNFSANVV----AEGTTVNLGLWDTAGQEDYNRLRPLSY 74
           LL  L  + +S +     TV  +     +         + L +WD AG+E++    P   
Sbjct: 18  LLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 77

Query: 75  RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134
               +++  + L    +  + +K W+  ++  +   PV+LVGT LD+ ++K         
Sbjct: 78  TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQ-------R 130

Query: 135 VPVTTAQGEELRKQIG----ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
               +   +EL  + G      Y+   +++    +  +    I   + 
Sbjct: 131 KACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  100 bits (251), Expect = 8e-27
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 14/153 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           D   T+  +  +  V+     V   +WDTAG E Y  +    YRGA   +L F L    +
Sbjct: 53  DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT 112

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           Y  V ++W+ EL  +    + V+LVG K DL + +           V T +     +  G
Sbjct: 113 YAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNG 161

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 183
              ++E S+    NV+  F+  +K +     KQ
Sbjct: 162 L-LFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 99.1 bits (248), Expect = 1e-26
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 14/148 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +  PT+     +  V  +       +WDTAG E +  L P+ YRG+   ++ + +    +
Sbjct: 34  NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET 93

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +  + K W+ EL+ +  P + V + G K DL + +           V     ++    I 
Sbjct: 94  FSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIH 142

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
           A  ++E S+K   N+  +F    + +  
Sbjct: 143 A-IFVETSAKNAININELFIEISRRIPS 169

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 99.6 bits (249), Expect = 1e-26
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 17/153 (11%)

Query: 33  DYIPTV-FDNFSANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
            Y  T+  D  +  V  +G     + +WDTAGQE +  L    YRGAD  VL + + + +
Sbjct: 36  QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNAS 95

Query: 91  SYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145
           S+EN+ K W  E   ++        P V++G K+D  E K           V+    +EL
Sbjct: 96  SFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQEL 145

Query: 146 RKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
            K +G       S+K   NV   F+   +  ++
Sbjct: 146 AKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 98.7 bits (247), Expect = 2e-26
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
               T+  +  + ++  +G  V + +WDTAGQE +  LR   YRG+D  +L FS+    S
Sbjct: 35  QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS 94

Query: 92  YENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           ++N+   W  E  +Y+        P V++G K+D+ E +           V+T + +   
Sbjct: 95  FQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWC 142

Query: 147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
           +  G   Y E S+K   NV A F+ A++ V+ 
Sbjct: 143 RDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 99.7 bits (249), Expect = 2e-26
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 14/154 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
               T+  D     V   G  V L +WDTAGQE +  +    YR A+  +L + +    S
Sbjct: 54  GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES 113

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +  +  +W+ E++ Y S  V  VLVG K+DL E +           V+  + EE  +   
Sbjct: 114 FRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQD 162

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
             YY+E S+K   NV+ +F      +I   ++  
Sbjct: 163 M-YYLETSAKESDNVEKLFLDLACRLISEARQNT 195

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 99.6 bits (249), Expect = 2e-26
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 14/160 (8%)

Query: 33  DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            ++ TV  +F    +      + L +WDTAG E Y  +    YRGA  F+L + + +  S
Sbjct: 36  AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES 95

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +  V + W  +++ Y      V+LVG K D+ +++           V++ +G +L   +G
Sbjct: 96  FNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLG 144

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQ 190
              + E S+K   NVK  F+  + V+ +   +  +     
Sbjct: 145 FE-FFEASAKDNINVKQTFERLVDVICEKMSESLDTADPA 183

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 98.8 bits (247), Expect = 3e-26
 Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 33  DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
               TV  +F    V   G  + L +WDTAGQE +N +    YR A   +L + +  + +
Sbjct: 54  ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET 113

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           ++++  KW+  +  Y S    ++LVG KLD   D+           +T  QGE+  +QI 
Sbjct: 114 FDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQIT 162

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              + E S+K   NV  +F   +  ++K
Sbjct: 163 GMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 98.4 bits (246), Expect = 4e-26
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 14/148 (9%)

Query: 33  DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            ++ TV  +F    V      + L +WDTAGQE Y  +    YRGA  F+L + + ++ S
Sbjct: 50  AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES 109

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +  V + W  +++ Y      V+LVG K DL +++           V    G  L   +G
Sbjct: 110 FAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLG 158

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              + E S+K   NVK VF+  + V+ +
Sbjct: 159 FE-FFEASAKENINVKQVFERLVDVICE 185

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 98.9 bits (247), Expect = 4e-26
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 14/148 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            YI T+  D     +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S
Sbjct: 61  SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 120

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           + NV K+W+ E+  Y S  V  +LVG K DL   K           V     +E    +G
Sbjct: 121 FNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLG 169

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              ++E S+K   NV+  F      + K
Sbjct: 170 IP-FLETSAKNATNVEQSFMTMAAEIKK 196

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 98.5 bits (246), Expect = 5e-26
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 14/162 (8%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +   T+  +  + ++  +G T+   +WDTAGQE Y R+    YRGA   +L + +    +
Sbjct: 33  ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT 92

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           YENV ++W+ EL+ +    + ++LVG K DLR  +           V T +     ++  
Sbjct: 93  YENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNN 141

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRG 192
            S +IE S+    NV+  F   +  + +   +++   +    
Sbjct: 142 LS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 98.1 bits (245), Expect = 6e-26
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 33  DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            ++ TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + +  S
Sbjct: 51  AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES 110

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +  V + W  +++ Y      V+LVG K D+ E++           V T +G+ L +Q+G
Sbjct: 111 FNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLG 159

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              + E S+K   +V+  F+  +  +  
Sbjct: 160 FD-FFEASAKENISVRQAFERLVDAICD 186

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 98.1 bits (245), Expect = 6e-26
 Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 14/162 (8%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            YI T+  D     +  +G T+ L +WDTAGQE +  +    YRGA   ++ + +  + S
Sbjct: 44  SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 103

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           + NV K+W+ E+  Y S  V  +LVG K DL   K           V     +E    +G
Sbjct: 104 FNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLG 152

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRG 192
              ++E S+K   NV+  F      + K           ++ 
Sbjct: 153 IP-FLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKS 193

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 98.5 bits (246), Expect = 6e-26
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 18/170 (10%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            Y  T+  D  +  V+ +   V + +WDTAGQE +  L    YRGAD  VL F + +  +
Sbjct: 36  QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT 95

Query: 92  YENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           ++ +   W  E    +        P V++G K+DL   +           V T + +   
Sbjct: 96  FKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWC 143

Query: 147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 196
                  Y E S+K   NV+  F    +  +K   + +   +      L+
Sbjct: 144 YSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLD 193

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 98.1 bits (245), Expect = 6e-26
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 14/152 (9%)

Query: 37  TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL 96
               N     V  G  ++L LWDTAG E +  L    +R A  F+L F L +  S+ NV 
Sbjct: 54  VYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV- 112

Query: 97  KKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154
           + WI +LQ +  S    +VL G K DL + +           V   +  EL ++ G   Y
Sbjct: 113 RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKYGIP-Y 161

Query: 155 IECSSKTQQNVKAVFDAAIKVVIKPPQKQKEK 186
            E S+    N+    +  + +++K  ++  +K
Sbjct: 162 FETSAANGTNISHAIEMLLDLIMKRMERSVDK 193

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 98.1 bits (245), Expect = 7e-26
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 14/162 (8%)

Query: 33  DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           DYI T+  +F    V  +G TV L +WDTAGQE +  +    YRG+   ++ + +  + S
Sbjct: 36  DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 95

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +  V K W+ E+  Y +  V  +LVG K DL++ +           V     +E      
Sbjct: 96  FNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANK 144

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRG 192
              ++E S+    NV+  F    + + +   +Q   +  Q+ 
Sbjct: 145 MP-FLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 185

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 97.7 bits (244), Expect = 7e-26
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 14/148 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            +  T+  +  +  V  +G  + L +WDTAGQE +  +    YRGA   +L + +  R +
Sbjct: 49  VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET 108

Query: 92  YENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           + ++   W+ +  QH S  + ++L+G K DL   +           V   +GE   ++ G
Sbjct: 109 FNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHG 157

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              ++E S+KT  NV+  F    K + +
Sbjct: 158 L-IFMETSAKTACNVEEAFINTAKEIYR 184

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 97.3 bits (243), Expect = 8e-26
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 14/156 (8%)

Query: 33  DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            +I T+  +F    +  +G  + L +WDTAGQE +  +    YRGA   +L + + +  S
Sbjct: 36  TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS 95

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           ++N+ + WI  ++ + S  V  +++G K D+ + +           V+  +GE+L    G
Sbjct: 96  FDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYG 144

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEK 186
              ++E S+K   NV+  F    + +     K  + 
Sbjct: 145 IK-FMETSAKANINVENAFFTLARDIKAKMDKNWKA 179

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 96.9 bits (242), Expect = 1e-25
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +   T+  +  + ++  +G T+   +WDTAG E Y  +    YRGA   +L + +    +
Sbjct: 57  ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT 116

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           YENV ++W+ EL+ +    + ++LVG K DLR  +           V T +     ++ G
Sbjct: 117 YENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNG 165

Query: 151 ASYYIECSSKTQQNVKAVFDAAIK 174
              +IE S+    NV+A F   + 
Sbjct: 166 L-SFIETSALDSTNVEAAFQTILT 188

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 96.9 bits (242), Expect = 1e-25
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 14/154 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           D   T+  +  S  +   G  V L +WDTAGQE +  +    YRGA   +L + + SR +
Sbjct: 38  DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET 97

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           Y  +   W+ + +   S  + ++L G K DL  D+           VT  +     ++  
Sbjct: 98  YNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENE 146

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
              ++E S+ T +NV+  F    + ++   +  +
Sbjct: 147 LM-FLETSALTGENVEEAFVQCARKILNKIESGE 179

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 97.3 bits (243), Expect = 1e-25
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 14/148 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           D   T+  +  S  V   G TV L +WDTAGQE +  +    YRGA   +L + + SR +
Sbjct: 53  DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET 112

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           Y ++   W+ + +   SP + V+L G K DL  ++           VT  +     ++  
Sbjct: 113 YNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENE 161

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              ++E S+ T +NV+  F    + ++ 
Sbjct: 162 LM-FLETSALTGENVEEAFLKCARTILN 188

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 97.8 bits (244), Expect = 2e-25
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 14/162 (8%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           D   T+  +  +  +  EG  +   +WDTAGQE Y  +    YRGA   ++ + +   +S
Sbjct: 41  DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS 100

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           YEN    W+ EL+      V V L+G K DL   +           V T + +   ++  
Sbjct: 101 YENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQ 149

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRG 192
              + E S+   +NV   F+  I  + +   K +        
Sbjct: 150 LL-FTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSA 190

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 96.5 bits (241), Expect = 2e-25
 Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 14/148 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           D   T+  +  +  +   G  + L +WDTAGQE +  +    YRGA   ++ + +  R++
Sbjct: 43  DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST 102

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           Y ++   W+ + ++  +P   ++L+G K DL   +           VT  + ++  ++ G
Sbjct: 103 YNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENG 151

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              ++E S+KT +NV+  F  A K + +
Sbjct: 152 L-LFLEASAKTGENVEDAFLEAAKKIYQ 178

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 96.2 bits (240), Expect = 5e-25
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 31/173 (17%)

Query: 33  DYIPTV---F--------DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLS---YRGAD 78
            +I TV   F                 +   V+L LWDTAGQE   R R L+   +R A 
Sbjct: 53  KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE---RFRSLTTAFFRDAM 109

Query: 79  VFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVP 136
            F+L F L S+ S+ NV + W+ +LQ         +VL+G K DL + +           
Sbjct: 110 GFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE---------- 158

Query: 137 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKK 189
           V   Q  EL  + G   Y E S+ T QNV+   +  + +++K  ++  EK + 
Sbjct: 159 VNERQARELADKYGIP-YFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTQI 210

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 94.9 bits (237), Expect = 7e-25
 Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 14/152 (9%)

Query: 34  YIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +I TV  D  +  +  +G  V L +WDTAGQE +  +    YR A   +L + + ++AS+
Sbjct: 40  FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF 99

Query: 93  ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           +N+ + W+ E+  Y    V ++L+G K+D   ++           V    GE+L K+ G 
Sbjct: 100 DNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL 148

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 183
             ++E S+KT  NV   F A  K + +   K 
Sbjct: 149 P-FMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 95.5 bits (238), Expect = 8e-25
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 15/160 (9%)

Query: 33  DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            +I T+  +F    V   G  V L LWDTAGQE +  +    YRGA   +L + +    +
Sbjct: 48  SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT 107

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           + N+ K+W   +  + +    ++LVG K D+ E +           VT  QGE L K++G
Sbjct: 108 FTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-ETRV----------VTADQGEALAKELG 155

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQ 190
              +IE S+K   NV  +F    K++ +     K      
Sbjct: 156 IP-FIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGN 194

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 95.0 bits (237), Expect = 9e-25
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 16/161 (9%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +   T+  D     +  +G    L +WDTAGQE +  L P  YRGA   +L + +  R +
Sbjct: 43  ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT 102

Query: 92  YENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           +  +   W+ EL+ Y     +  +LVG K+D  E++           V   +G +  ++ 
Sbjct: 103 FVKL-DNWLNELETYCTRNDIVNMLVGNKIDK-ENRE----------VDRNEGLKFARKH 150

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQ 190
               +IE S+KT   V+  F+  ++ +I+ P   + + +  
Sbjct: 151 SM-LFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNS 190

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 93.0 bits (232), Expect = 3e-24
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 33  DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            +I T+  +F    V   G  V L +WDTAGQE +  +    YRGA   +L + +    +
Sbjct: 31  SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT 90

Query: 92  YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           + N+ K+W   +  + +    ++LVG K D+ E +           VT  QGE L K++G
Sbjct: 91  FTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-ETRV----------VTADQGEALAKELG 138

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              +IE S+K   NV  +F    K++ +
Sbjct: 139 IP-FIESSAKNDDNVNEIFFTLAKLIQE 165

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 93.7 bits (233), Expect = 4e-24
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 14/153 (9%)

Query: 26  SGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85
           +  +SI D    +  N   N       +   +WDTAGQE Y  + PL YRGA   ++ F 
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125

Query: 86  LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145
           + +  + +   K W+ +L+       ++LV  K+D  + +           V   + ++ 
Sbjct: 126 ISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDKNKFQ-----------VDILEVQKY 172

Query: 146 RKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
            +      +I+ S+KT  N+K +F    + + K
Sbjct: 173 AQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYK 204

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 93.5 bits (233), Expect = 5e-24
 Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 19/154 (12%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLW--DTAGQEDYNRLRPLSYRGADVFVLAFSLVSR 89
           DY  T   +   A V    TTV++ L+  DTAG + Y       + G    +L F + S 
Sbjct: 50  DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSM 109

Query: 90  ASYENVLKKWIPELQ----HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145
            S+E+  K W   L+         +  VLV  K DL   +H          V     ++ 
Sbjct: 110 ESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRH---------QVRLDMAQDW 159

Query: 146 RKQIGASYYIECSSK-TQQNVKAVFDAAIKVVIK 178
                   + + S+    ++  A F +      +
Sbjct: 160 ATTNTLD-FFDVSANPPGKDADAPFLSIATTFYR 192

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 92.2 bits (230), Expect = 7e-24
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 33  DYIPTV-FDNFSANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
            Y  T+  D F   +   G   V L +WD  GQ    ++      GA   +L + + +  
Sbjct: 34  QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ 93

Query: 91  SYENVLKKWIPELQ----HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           S+EN+ + W   ++           V LVG K+DL   +           +   +     
Sbjct: 94  SFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFC 142

Query: 147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 183
           ++ G S     S+KT  +V   F      ++     +
Sbjct: 143 QENGFS-SHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 97.4 bits (242), Expect = 7e-24
 Identities = 23/150 (15%), Positives = 44/150 (29%), Gaps = 15/150 (10%)

Query: 37  TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL 96
              +        E        WD  GQE  +         + V++L        +  N  
Sbjct: 82  QAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSN-K 137

Query: 97  KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156
             W+  ++ Y    PV++V  K+D     +          +   +  E    I    +  
Sbjct: 138 HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIENR-FHR 186

Query: 157 CSSKTQQNVKAVFDAAIKVVIKPPQKQKEK 186
            S K    V+++  +    V+ P       
Sbjct: 187 ISCKNGDGVESIAKSLKSAVLHPDSIYGTP 216

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 86.4 bits (214), Expect = 1e-21
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 11/139 (7%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           +  PT+     +  V     TV   +WDTAGQE +  L P  YR A   ++ + +    S
Sbjct: 31  NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS 90

Query: 92  YENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           +    + W+ EL    S  + + LVG K+D  ++            V   +GE+L ++ G
Sbjct: 91  FIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGGERK-------VAREEGEKLAEEKG 142

Query: 151 ASYYIECSSKTQQNVKAVF 169
              + E S+KT +NV  VF
Sbjct: 143 L-LFFETSAKTGENVNDVF 160

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 85.7 bits (213), Expect = 2e-21
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 25/152 (16%)

Query: 33  DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----PLSYRGADVFVLAFSLV 87
               T+  D     V  +G  + + LWDTAGQE   R R       YR     V  + + 
Sbjct: 48  RTEATIGVDFRERAVDIDGERIKIQLWDTAGQE---RFRKSMVQHYYRNVHAVVFVYDMT 104

Query: 88  SRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145
           + AS+ ++   WI E + +     +P +LVG K DLR              V T   ++ 
Sbjct: 105 NMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKF 153

Query: 146 RKQIGASYYIECSSKTQ---QNVKAVFDAAIK 174
                     E S+K      +V+A+F     
Sbjct: 154 ADTHSMP-LFETSAKNPNDNDHVEAIFMTLAH 184

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 23/156 (14%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGL----WDTAGQEDY--NRLRPLSYRGADVFVLAF-- 84
            +  T    +     A        L     D  G E     +  P      D F+L    
Sbjct: 113 PHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172

Query: 85  SLVSRASYENVLKKWIPE-LQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 142
           S     ++++   K++       +    P+V+V TK D   +++          +  A  
Sbjct: 173 SRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------IRDAHT 221

Query: 143 EELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
             L K+      +E S+++  NV   F   ++++ K
Sbjct: 222 FALSKK-NLQV-VETSARSNVNVDLAFSTLVQLIDK 255

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 27/155 (17%)

Query: 35  IPTVFDNFSANVVA--EGTTVNLGLWDTAGQEDYNRLRPLSYRGAD--VFVL----AFSL 86
             T+F +F    +   +G      L+   GQ  YN  R L  RG D  VFV         
Sbjct: 54  ERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR 113

Query: 87  VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
            +  S  N +++ + E       VP+V+   K DL          P  +PV     E +R
Sbjct: 114 ANAESMRN-MRENLAEYGLTLDDVPIVIQVNKRDL----------PDALPV-----EMVR 157

Query: 147 KQIGAS---YYIECSSKTQQNVKAVFDAAIKVVIK 178
             +        +E  +   + V        ++V+ 
Sbjct: 158 AVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 24/125 (19%)

Query: 23  LSVSGRSSIWDYIPTVFDNFSAN--------------VVAEGTTVNLGLWDTAGQEDY-- 66
            S SG+SS+      +F N+SA                +     + L LWD  GQ+ +  
Sbjct: 11  RSGSGKSSM---RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67

Query: 67  ---NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 121
               + +   ++   V +  F + S    +++    K + +L+ YSP   + ++  K+DL
Sbjct: 68  NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDL 127

Query: 122 REDKH 126
            +   
Sbjct: 128 VQLDK 132

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 23/117 (19%)

Query: 23  LSVSGRSSIWDYIPTVFDNFSANVVA--EGTT----------VNLGLWDTAGQEDYNRLR 70
           +   G+SSI      VF N         E T+          ++L + +  GQ +Y    
Sbjct: 7   VRRCGKSSI---CKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS 63

Query: 71  PLS---YRGADVFVLAFSLVSRASYENV---LKKWIPELQHYSPGVPVVLVGTKLDL 121
             S   ++     V      S+  Y N    L   I      +P + + ++  K+D 
Sbjct: 64  YDSERLFKSVGALVYVID--SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 21/122 (17%)

Query: 23  LSVSGRSSIWDYIPTVFDNFSAN--------------VVAEGTTVNLGLWDTAGQEDYNR 68
           L  SG+SSI      VF   S N               ++  + VN  +WD  GQ D+  
Sbjct: 28  LRRSGKSSI---QKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD 84

Query: 69  L---RPLSYRGADVFVLAFSLVSRASYE-NVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124
                 + +RG    +               L   + +    +P +   +   K+D   D
Sbjct: 85  PTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144

Query: 125 KH 126
            H
Sbjct: 145 DH 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 62/229 (27%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFD---NFSANVVAEGTTVNLGLWDTAGQED-YNRLRP 71
           T  L + L       +  ++  V      F  + +             +     Y   R 
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR------QPSMMTRMYIEQRD 117

Query: 72  LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 131
             Y    VF      VSR      L++ + EL+   P   V++ G    L   K ++A  
Sbjct: 118 RLYNDNQVFAKYN--VSRLQPYLKLRQALLELR---PAKNVLIDG---VLGSGKTWVA-- 167

Query: 132 PGLVPVTTAQGEELRKQI-GASYYI---ECSS-----KTQQNVKAVFD----AAIKVVIK 178
                +      +++ ++    +++    C+S     +  Q +    D    +       
Sbjct: 168 -----LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 179 PPQKQKEKKKKQRG---------CLL---NV--------F---CGRNLV 204
              +    + + R          CLL   NV        F   C + L+
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILL 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.98
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.93
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.92
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.92
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.92
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.9
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.9
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.9
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.89
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.87
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.87
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.87
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.85
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.84
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.84
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.84
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.83
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.83
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.83
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.83
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.82
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.82
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.82
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.82
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.81
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.81
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.81
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.81
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.8
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.8
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.8
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.8
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.79
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.79
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.79
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.79
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.79
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.78
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.78
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.78
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.77
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.77
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.77
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.76
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.76
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.75
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.75
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.74
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.74
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.73
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.72
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.72
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.72
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.7
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.7
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.7
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.69
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.69
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.67
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.67
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.66
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.65
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.65
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.65
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.63
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.62
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.59
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.59
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.59
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.59
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.53
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.52
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.47
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.45
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.43
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.39
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.38
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.37
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.36
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.29
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.28
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.26
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.25
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.21
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.19
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.08
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.06
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.01
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.9
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.88
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.85
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.48
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.39
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.37
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.34
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.29
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.24
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.15
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.1
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.99
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.98
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.94
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.63
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.45
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.33
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.9
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.87
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.82
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.54
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.32
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.03
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	94.39
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.23
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	93.98
1via_A	175	Shikimate kinase; structural genomics, transferase	93.94
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.89
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	93.82
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.56
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.53
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.49
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	93.48
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	93.18
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	93.15
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.11
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	93.08
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.03
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	93.01
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	92.93
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	92.91
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	92.89
2xxa_A	433	Signal recognition particle protein; protein trans	92.88
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	92.84
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	92.8
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	92.67
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	92.66
3cwq_A	209	Para family chromosome partitioning protein; alpha	92.57
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	92.57
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	92.56
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	92.47
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	92.39
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	92.38
1b0u_A	262	Histidine permease; ABC transporter, transport pro	92.37
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	92.37
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	92.34
1sgw_A	214	Putative ABC transporter; structural genomics, P p	92.32
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	92.27
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.26
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	92.25
1g6h_A	257	High-affinity branched-chain amino acid transport	92.18
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	92.16
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	92.15
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	92.14
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	92.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	91.99
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	91.98
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	91.97
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	91.95
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	91.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	91.93
1ji0_A	240	ABC transporter; ATP binding protein, structural g	91.91
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	91.88
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	91.88
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	91.8
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	91.8
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	91.79
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	91.79
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	91.74
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	91.69
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	91.64
2ghi_A	260	Transport protein; multidrug resistance protein, M	91.61
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	91.6
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	91.55
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	91.54
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	91.52
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	91.49
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	91.49
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	91.47
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	91.44
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	91.41
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	91.4
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	91.37
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	91.34
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.24
3end_A	307	Light-independent protochlorophyllide reductase ir	91.2
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	91.19
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	91.05
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	91.05
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	91.02
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	90.92
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	90.9
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	90.89
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	90.82
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	90.8
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	90.74
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	90.74
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	90.63
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	90.52
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	90.51
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	90.45
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	90.42
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	90.38
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	90.21
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	90.17
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	90.17
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	90.16
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	90.13
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	90.11
4a74_A	231	DNA repair and recombination protein RADA; hydrola	90.11
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	90.1
2eyu_A	261	Twitching motility protein PILT; pilus retraction	90.1
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	90.02
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	90.0
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	89.97
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	89.91
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	89.91
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	89.78
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	89.73
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	89.71
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	89.67
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	89.65
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	89.61
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	89.56
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	89.48
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	89.48
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	89.42
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	89.41
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	89.4
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	89.35
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	89.2
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	89.06
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	89.06
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	89.04
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	88.99
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	88.96
2vli_A	183	Antibiotic resistance protein; transferase, tunica	88.89
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	88.89
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	88.79
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	88.75
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	88.75
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	88.64
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	88.63
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	88.52
2chg_A	226	Replication factor C small subunit; DNA-binding pr	88.49
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	88.4
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	88.36
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	88.36
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	88.35
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	88.33
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	88.29
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	88.26
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	87.96
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	87.9
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	87.86
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	87.8
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	87.74
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	87.6
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	87.47
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	87.43
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	87.36
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	87.21
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	87.18
3uc9_A	233	Increased recombination centers protein 6; rossman	87.1
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	87.06
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	86.93
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	86.92
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	86.91
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	86.88
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	86.87
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	86.82
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	86.8
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	86.53
2ewv_A	372	Twitching motility protein PILT; pilus retraction	86.4
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	86.32
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	86.24
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	86.07
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	85.91
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	85.8
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	85.77
3kta_A	182	Chromosome segregation protein SMC; structural mai	85.75
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	85.74
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	85.63
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	85.57
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	85.52
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	85.46
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	85.41
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	85.38
2og2_A	359	Putative signal recognition particle receptor; nuc	85.21
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	85.18
1p9r_A	418	General secretion pathway protein E; bacterial typ	85.12
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	84.91
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	84.9
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	84.88
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	84.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	84.64
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	84.58
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	84.39
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	84.38
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	84.33
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	84.13
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	84.13
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	84.08
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	84.03
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	83.92
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	83.8
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	83.73
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	83.73
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	83.72
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	83.67
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	83.65
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	83.64
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	83.36
2cvh_A	220	DNA repair and recombination protein RADB; filamen	83.34
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	83.13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	83.13
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	82.95
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	82.86
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	82.77
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	82.56
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	82.52
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	82.16
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	82.02
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	81.94
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	81.83
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	81.77
3bos_A	242	Putative DNA replication factor; P-loop containing	81.65
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	81.59
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	81.27
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	81.16
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	80.79
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	80.61
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	80.6
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	80.42
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	80.41

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=4.5e-43  Score=263.63  Aligned_cols=162  Identities=28%  Similarity=0.397  Sum_probs=140.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|+++|| ||||+++|+.+.|...|.||++.++ ...+.+++..+.+.||||+|+++|+++++.|+++++++++
T Consensus        13 ~~KivlvGd~~VG-KTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il   91 (216)
T 4dkx_A           13 KFKLVFLGEQSVG-KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV   91 (216)
T ss_dssp             CEEEEEECSTTSS-HHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEECcCCcC-HHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence            5799999999999 9999999999999999999999776 5678889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||+++++||+.+ ..|+..+.... +++|++|||||+|+.+.+.+          +.++++++++.+++ +|+||||++
T Consensus        92 v~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V----------~~~e~~~~a~~~~~-~~~e~SAkt  159 (216)
T 4dkx_A           92 VYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQV----------SIEEGERKAKELNV-MFIETSAKA  159 (216)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred             EeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCcc----------cHHHHhhHHHHhCC-eeEEEeCCC
Confidence            9999999999999 78888886654 78999999999999887764          99999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      |.||+++|+.|++.+..
T Consensus       160 g~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          160 GYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             TBSHHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.1e-36  Score=228.13  Aligned_cols=191  Identities=63%  Similarity=1.007  Sum_probs=152.2

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|.++.+...+.||+++.+...+.+++..+.+.+|||||++.+..++..+++++|++|+
T Consensus         8 ~~~ki~i~G~~~~G-KTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il   86 (212)
T 2j0v_A            8 KFIKCVTVGDGAVG-KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   86 (212)
T ss_dssp             CEEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCC-HHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence            35899999999999 99999999999988889999998887788889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |||++++++++.+...|+..+....++.|+++|+||+|+.+.+.+..+  ....+..++++.+++.++..+|+++||++|
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999855899999887789999999999999765432111  111347888999999999669999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCcchh----hhcccCCCeEEe
Q 028595          163 QNVKAVFDAAIKVVIKPPQKQK----EKKKKQRGCLLN  196 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~~~~~~----~~~~~~~~c~~~  196 (207)
                      .|++++|+++++.+.+.+...+    ++++++..|.++
T Consensus       165 ~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~  202 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIA  202 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC---------------------
T ss_pred             CCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEe
Confidence            9999999999999988765444    233334567764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.3e-35  Score=223.00  Aligned_cols=179  Identities=32%  Similarity=0.555  Sum_probs=151.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.||++..+...+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus        26 ~~~ki~vvG~~~vG-KSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (214)
T 3q3j_B           26 ARCKLVLVGDVQCG-KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL  104 (214)
T ss_dssp             -CEEEEEECSTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceEEEEEECcCCCC-HHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence            46899999999999 99999999999999999999999988888888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++++..+...|+..+....+++|+++||||+|+.++.....  .....+.+..++++.+++.+++.+|+++||+
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF  184 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence            99999999999954899999988888999999999999976410000  0001122588999999999998799999999


Q ss_pred             CCCC-HHHHHHHHHHHHhCCCcc
Q 028595          161 TQQN-VKAVFDAAIKVVIKPPQK  182 (207)
Q Consensus       161 ~~~~-i~~~f~~i~~~~~~~~~~  182 (207)
                      +|.| ++++|+++++.+..+...
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC----
T ss_pred             CCcccHHHHHHHHHHHHhccCcC
Confidence            9998 999999999999877543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=5.1e-35  Score=216.21  Aligned_cols=169  Identities=37%  Similarity=0.627  Sum_probs=154.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.||.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus        23 ~~ki~~vG~~~~G-KSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  101 (194)
T 3reg_A           23 ALKIVVVGDGAVG-KTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLC  101 (194)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeEEEEECcCCCC-HHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEE
Confidence            5799999999999 999999999999988999999999988888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  163 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  163 (207)
                      ||+++++++..+...|+..+....+++|+++|+||+|+.+...        +.+..++++.+++.+++..++++||++|.
T Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  173 (194)
T 3reg_A          102 FAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS--------DDVTKQEGDDLCQKLGCVAYIEASSVAKI  173 (194)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT--------TCCCHHHHHHHHHHHTCSCEEECBTTTTB
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC--------CcccHHHHHHHHHhcCCCEEEEeecCCCC
Confidence            9999999999976789999988778999999999999975421        12488999999999998459999999999


Q ss_pred             CHHHHHHHHHHHHhCCCc
Q 028595          164 NVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       164 ~i~~~f~~i~~~~~~~~~  181 (207)
                      |++++|+++++.+..++.
T Consensus       174 gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          174 GLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             SHHHHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHHHHHhcCC
Confidence            999999999999987754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=219.81  Aligned_cols=162  Identities=28%  Similarity=0.423  Sum_probs=148.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus        14 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v   92 (206)
T 2bov_A           14 LHKVIMVGSGGVG-KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   92 (206)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eEEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEE
Confidence            5799999999999 999999999999888899999988888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++..+ ..|+..+....  .++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||++
T Consensus        93 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~  160 (206)
T 2bov_A           93 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQV----------SVEEAKNRAEQWNV-NYVETSAKT  160 (206)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEEECTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCccccccc----------cHHHHHHHHHHhCC-eEEEEeCCC
Confidence            999999999998 78888887765  38999999999999876553          78899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      |.|++++|+++++.+..
T Consensus       161 g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          161 RANVDKVFFDLMREIRA  177 (206)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.4e-35  Score=216.51  Aligned_cols=180  Identities=30%  Similarity=0.465  Sum_probs=148.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus         3 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVG-KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSS-HHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46799999999999 99999999999988889999988888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+..           +..++++.+++.+++ +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  148 (189)
T 4dsu_A           82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK  148 (189)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            9999999999998 78887776644  589999999999997543           378899999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCc-----chhhhcccCCCeEEe
Q 028595          161 TQQNVKAVFDAAIKVVIKPPQ-----KQKEKKKKQRGCLLN  196 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~~-----~~~~~~~~~~~c~~~  196 (207)
                      +|.|++++|+++++.+...+.     ....+++++.+|+++
T Consensus       149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~  189 (189)
T 4dsu_A          149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM  189 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence            999999999999999875432     222334445667654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.5e-35  Score=214.92  Aligned_cols=164  Identities=24%  Similarity=0.444  Sum_probs=119.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.||++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus         7 ~~~ki~v~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            7 YLFKLLLIGDSGVG-KTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CceEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            46899999999999 9999999999988888889988777 457788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~  153 (183)
T 2fu5_C           86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQV----------SKERGEKLALDYGI-KFMETSAK  153 (183)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCCS----------CHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCcC----------CHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999998 78988887754 68999999999999776553          78899999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.|++++|+++++.+...
T Consensus       154 ~~~~i~~l~~~l~~~i~~~  172 (183)
T 2fu5_C          154 ANINVENAFFTLARDIKAK  172 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-35  Score=219.00  Aligned_cols=176  Identities=27%  Similarity=0.351  Sum_probs=145.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus        24 ~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  102 (201)
T 3oes_A           24 YRKVVILGYRCVG-KTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLV  102 (201)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEE
T ss_pred             cEEEEEECCCCcC-HHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEE
Confidence            6799999999999 999999999999998999999988877777788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+ ..|+..+....  +++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||++
T Consensus       103 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~~  170 (201)
T 3oes_A          103 YSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPEREV----------QAVEGKKLAESWGA-TFMESSARE  170 (201)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEECCTTC
T ss_pred             EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCcccccc----------CHHHHHHHHHHhCC-eEEEEeCCC
Confidence            999999999999 78888887653  47999999999999876664          88999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEe
Q 028595          162 QQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  196 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~  196 (207)
                      |.|++++|+++++.+...+..    .+++.+|.++
T Consensus       171 ~~~v~~l~~~l~~~i~~~~~~----~~~~~~c~l~  201 (201)
T 3oes_A          171 NQLTQGIFTKVIQEIARVENS----YGQERRCHLM  201 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----------------
T ss_pred             CCCHHHHHHHHHHHHHhhhhh----hccccccccC
Confidence            999999999999999876543    2334456653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.2e-34  Score=211.61  Aligned_cols=166  Identities=25%  Similarity=0.318  Sum_probs=149.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         6 ~~ki~~~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v   84 (181)
T 3t5g_A            6 SRKIAILGYRSVG-KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV   84 (181)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred             eEEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence            6799999999999 999999999998889999999998877888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+ ..|+..+....  +++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||++
T Consensus        85 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~  152 (181)
T 3t5g_A           85 YSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI----------SYEEGKALAESWNA-AFLESSAKE  152 (181)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-EEEECCTTS
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhccee----------cHHHHHHHHHHhCC-cEEEEecCC
Confidence            999999999999 77887775544  48999999999999776654          88999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCcc
Q 028595          162 QQNVKAVFDAAIKVVIKPPQK  182 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~~~  182 (207)
                      |.|++++|+++++.+...+..
T Consensus       153 ~~~v~~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          153 NQTAVDVFRRIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTC---
T ss_pred             CCCHHHHHHHHHHHHHHhcCC
Confidence            999999999999999877643

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-34  Score=213.48  Aligned_cols=176  Identities=44%  Similarity=0.778  Sum_probs=152.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.||++..+...+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus        17 ~~~ki~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   95 (194)
T 2atx_A           17 LMLKCVVVGDGAVG-KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   95 (194)
T ss_dssp             EEEEEEEEECTTSS-HHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             ceEEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence            35799999999999 99999999999988889999998887788888889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++++..+...|+..+....+++|+++|+||+|+.+......  .....+.+..+++..+++.++..+++++||+
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  175 (194)
T 2atx_A           96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  175 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence            99999999999984489999988778999999999999976431100  0011223578999999999997689999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.|++++|+++++.++.+
T Consensus       176 ~g~gi~~l~~~l~~~i~~p  194 (194)
T 2atx_A          176 TQKGLKTVFDEAIIAILTP  194 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999988753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=213.67  Aligned_cols=162  Identities=23%  Similarity=0.346  Sum_probs=144.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.+|++..+...+.+++..+.+.+|||+|++.+..+ ..+++++|++++
T Consensus        20 ~~~ki~vvG~~~vG-KTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il   97 (187)
T 3c5c_A           20 LEVNLAILGRRGAG-KSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV   97 (187)
T ss_dssp             CEEEEEEECCTTSS-HHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCc-HHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence            35799999999999 9999999999999889999999888778888999999999999999998875 679999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      |||++++++++.+ ..|+..+....    +++|+++|+||+|+.+.+.+          ..++++++++.+++ +++++|
T Consensus        98 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~S  165 (187)
T 3c5c_A           98 VYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQV----------TKAEGVALAGRFGC-LFFEVS  165 (187)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS----------CHHHHHHHHHHHTC-EEEECC
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc----------CHHHHHHHHHHcCC-cEEEEe
Confidence            9999999999999 78888887653    58999999999999776653          88999999999998 999999


Q ss_pred             c-CCCCCHHHHHHHHHHHHhC
Q 028595          159 S-KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       159 a-~~~~~i~~~f~~i~~~~~~  178 (207)
                      | ++|.|++++|+.+++.+.+
T Consensus       166 a~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          166 ACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             SSSCSHHHHHHHHHHHHHHHC
T ss_pred             ecCccccHHHHHHHHHHHHhh
Confidence            9 8999999999999988754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.1e-34  Score=212.83  Aligned_cols=175  Identities=33%  Similarity=0.596  Sum_probs=150.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|.++.+...+.||.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus         6 ~~~ki~v~G~~~vG-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   84 (184)
T 1m7b_A            6 VKCKIVVVGDSQCG-KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   84 (184)
T ss_dssp             CEEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eEEEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence            46899999999999 99999999999988889999998887788888889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||++++++++.+...|+..+....++.|+++|+||+|+.+......  .....+.+..++++++++.++..+|+++||+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  164 (184)
T 1m7b_A           85 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  164 (184)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeec
Confidence            99999999999986689888888778999999999999975311000  0011233588899999999985599999999


Q ss_pred             -CCCCHHHHHHHHHHHHhC
Q 028595          161 -TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 -~~~~i~~~f~~i~~~~~~  178 (207)
                       ++.|++++|+.+++.++.
T Consensus       165 ~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          165 QSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TBHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence             689999999999998874

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=214.68  Aligned_cols=176  Identities=44%  Similarity=0.654  Sum_probs=144.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.||+++.+...+.+++..+.+.+|||||++.+..++..++.++|++++
T Consensus        19 ~~~ki~~~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   97 (201)
T 2q3h_A           19 RGVKCVLVGDGAVG-KTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL   97 (201)
T ss_dssp             -CEEEEEECSTTSS-HHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred             cceEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence            46899999999999 99999999999988889999998888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++++..+...|+..+....+++|+++|+||+|+.+......  .....+.+..+++..+++.++..+++++||+
T Consensus        98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  177 (201)
T 2q3h_A           98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL  177 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence            99999999999984479998888778999999999999976321000  0001123578899999999997789999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.|++++|+++++.+..+
T Consensus       178 ~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          178 TQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999988754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=2.4e-34  Score=210.59  Aligned_cols=177  Identities=51%  Similarity=0.829  Sum_probs=153.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         5 ~~~i~~~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   83 (186)
T 1mh1_A            5 AIKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC   83 (186)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             EEEEEEECCCCCC-HHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEE
Confidence            5799999999999 999999999999888899999888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++.++..+...|+..+....++.|+++|+||+|+.+......  .....+.+..+++..+++.++..+++++||++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (186)
T 1mh1_A           84 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  163 (186)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             EECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCC
Confidence            9999999999984479988888777999999999999976421000  00011235788899999999876899999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCc
Q 028595          162 QQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~~  181 (207)
                      |.|++++|+++++.+.+++.
T Consensus       164 g~gi~~l~~~l~~~~~~~~~  183 (186)
T 1mh1_A          164 QRGLKTVFDEAIRAVLCPPP  183 (186)
T ss_dssp             CTTHHHHHHHHHHHHSCCCC
T ss_pred             ccCHHHHHHHHHHHHhcccc
Confidence            99999999999999987754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=2e-35  Score=215.77  Aligned_cols=176  Identities=69%  Similarity=1.094  Sum_probs=136.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|.++.+...+.||+++.+...+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus         7 ~~~ki~v~G~~~~G-Kssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            7 RFIKCVTVGDGAVG-KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             CCCEEEEECSTTSS-HHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            46899999999999 99999999999888888999988877667778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |||++++++++.+...|+..+....++.|+++|+||+|+.+.+......+....+..++++++++.++..+++++||++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ  165 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCC
Confidence            99999999999984479999988777899999999999976554211112223347888999999999669999999999


Q ss_pred             CCHHHHHHHHHHHHhCC
Q 028595          163 QNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~  179 (207)
                      .|++++|+++++.++++
T Consensus       166 ~gi~~l~~~l~~~i~~~  182 (182)
T 3bwd_D          166 ENVKGVFDAAIRVVLQP  182 (182)
T ss_dssp             TTHHHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            99999999999988653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=209.46  Aligned_cols=167  Identities=29%  Similarity=0.442  Sum_probs=149.4

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++++|++
T Consensus         7 ~~~~~i~v~G~~~~G-Kssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVG-KSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CEEEEEEEECCTTSC-HHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             CcceEEEEECCCCCC-HHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            456899999999999 9999999999998888888988776 45778899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      ++|||+++++++..+ ..|+..+....++.|+++|+||+|+.+.+.+          ..+++..++..+++ +++++||+
T Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~  153 (181)
T 3tw8_B           86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKVV----------ETEDAYKFAGQMGI-QLFETSAK  153 (181)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhccc----------CHHHHHHHHHHcCC-eEEEEECC
Confidence            999999999999999 7899999887789999999999999876653          78899999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCc
Q 028595          161 TQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +|.|++++|+++.+.+...+.
T Consensus       154 ~~~gi~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          154 ENVNVEEMFNCITELVLRAKK  174 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999876543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=215.52  Aligned_cols=177  Identities=37%  Similarity=0.688  Sum_probs=132.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.||++..+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus        33 ~~~ki~vvG~~~vG-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           33 RSVKVVLVGDGGCG-KTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CEEEEEEEECTTSS-HHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             ceEEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            35899999999999 99999999999988888999988888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||++++++++.+...|+..+....+++|+++|+||+|+.+......  .....+.+..++++.+++.++..+++++||+
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  191 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR  191 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence            99999999999985579999888778899999999999976532100  0011223578899999999997799999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCC
Q 028595          161 TQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +|.|++++|+++++.+.+.+
T Consensus       192 ~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          192 LHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999987654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=214.86  Aligned_cols=166  Identities=27%  Similarity=0.384  Sum_probs=141.3

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus        27 ~~~~ki~vvG~~~vG-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           27 DFLFKLVLVGDASVG-KTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CEEEEEEEEECTTSS-HHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             ccceEEEEECcCCCC-HHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            457899999999999 9999999999998888889988776 55788899899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..++++++++.+++.+++++||
T Consensus       106 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v----------~~~~~~~~~~~~~~~~~~~~SA  174 (201)
T 2hup_A          106 ILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELREV----------SLAEAQSLAEHYDILCAIETSA  174 (201)
T ss_dssp             EEEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCcccccccc----------CHHHHHHHHHHcCCCEEEEEeC
Confidence            999999999999998 78988887765 68999999999999876553          7889999999999778999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++.|++++|+++++.+...
T Consensus       175 ~~g~gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          175 KDSSNVEEAFLRVATELIMR  194 (201)
T ss_dssp             TTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999988743

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-34  Score=214.13  Aligned_cols=175  Identities=33%  Similarity=0.596  Sum_probs=150.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.||++..+...+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus        27 ~~~ki~vvG~~~vG-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           27 VKCKIVVVGDSQCG-KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             CEEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeeEEEEECCCCCC-HHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            46899999999999 99999999999998889999998887778888889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++++..+...|+..+....++.|+++|+||+|+.+......  .....+.+..++++++++.++..+|+++||+
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  185 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence            99999999999986689888888778999999999999975311000  0011233588899999999985599999999


Q ss_pred             -CCCCHHHHHHHHHHHHhC
Q 028595          161 -TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 -~~~~i~~~f~~i~~~~~~  178 (207)
                       ++.|++++|+.+++.++.
T Consensus       186 ~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          186 QSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhh
Confidence             689999999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.9e-34  Score=213.66  Aligned_cols=164  Identities=27%  Similarity=0.433  Sum_probs=148.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus        25 ~~~ki~lvG~~~vG-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           25 FLFKIVLIGNAGVG-KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             EEEEEEEEESTTSS-HHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             cceEEEEECcCCCC-HHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            46899999999999 9999999999998888889988776 557888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++++++.+ ..|+..+.... .++|+++|+||+|+.+.+.+          ..++++.+++..++ +++++||+
T Consensus       104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~  171 (201)
T 2ew1_A          104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERREV----------SQQRAEEFSEAQDM-YYLETSAK  171 (201)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCSS----------CHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccccc----------CHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78988887765 57999999999999766553          78889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.|++++|+++++.+...
T Consensus       172 ~g~gv~~l~~~l~~~i~~~  190 (201)
T 2ew1_A          172 ESDNVEKLFLDLACRLISE  190 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.1e-33  Score=210.91  Aligned_cols=164  Identities=27%  Similarity=0.451  Sum_probs=148.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|.++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus         7 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVG-KSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             EEEEEEEEESTTSS-HHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             cceEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            46899999999999 9999999999998888889998777 457788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||+
T Consensus        86 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~  153 (206)
T 2bcg_Y           86 IVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRVV----------EYDVAKEFADANKM-PFLETSAL  153 (206)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-CEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccccc----------CHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999999 78988887665 67999999999999876553          78889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.|++++|.++++.+...
T Consensus       154 ~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          154 DSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-34  Score=214.00  Aligned_cols=163  Identities=23%  Similarity=0.337  Sum_probs=144.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|.++.+...+.||.+..+...+..++..+.+.+|||||++.+..++..+++++|++++
T Consensus         7 ~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            7 NDYRVVVFGAGGVG-KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCEEEEEEECTTSS-HHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCc-HHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            35799999999999 99999999999888888899888887778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |||+++++++..+ ..|+..+....   ++.|+++|+||+|+.+..           +..++++.+++.+++ +++++||
T Consensus        86 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa  152 (199)
T 2gf0_A           86 VFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETSA  152 (199)
T ss_dssp             EEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEec
Confidence            9999999999988 66766665432   478999999999997532           377889999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|.|++++|+++++.+..+
T Consensus       153 ~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          153 KMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             TTTBSHHHHHHHHHHHCSSS
T ss_pred             CCCCCHHHHHHHHHHHHhhh
Confidence            99999999999999988755

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.5e-33  Score=209.56  Aligned_cols=175  Identities=40%  Similarity=0.700  Sum_probs=151.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|.++.+...+.||++..+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus        24 ~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           24 IRKKLVIVGDGACG-KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             EEEEEEEEESTTSS-HHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCC-HHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            36799999999999 99999999999988889999998887778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++++..+...|+..+....++.|+++|+||+|+.+......  .....+.+..++++.+++.++..+++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK  182 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence            99999999999986688888888778999999999999976521100  0011123578899999999997789999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      +|.|++++|+++++.+++
T Consensus       183 ~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          183 TKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999988764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=7.3e-34  Score=205.18  Aligned_cols=164  Identities=27%  Similarity=0.430  Sum_probs=140.7

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+.+|.+..+. ..+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus         4 ~~~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            4 AYSFKVVLLGEGCVG-KTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             CEEEEEEEECCTTSC-HHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CcceEEEEECcCCCC-HHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            356899999999999 99999999999888888899887774 5777888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..++++.+++.++. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z08_A           83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERHV----------SIQEAESYAESVGA-KHYHTSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEEEBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECccccccccc----------CHHHHHHHHHHcCC-eEEEecC
Confidence            999999999999998 78888876654 57999999999999876553          78899999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++|.|++++|+++++.+.+
T Consensus       151 ~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          151 KQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             TTTBSHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=5.3e-34  Score=208.61  Aligned_cols=162  Identities=27%  Similarity=0.393  Sum_probs=148.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus        18 ~~ki~v~G~~~~G-KSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (183)
T 3kkq_A           18 TYKLVVVGDGGVG-KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   96 (183)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            5799999999999 999999999999888999999988888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC-
Q 028595           84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK-  160 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~-  160 (207)
                      ||++++++++.+ ..|+..+...  .+++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||+ 
T Consensus        97 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~~  164 (183)
T 3kkq_A           97 YSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRKV----------TRDQGKEMATKYNI-PYIETSAKD  164 (183)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS----------CHHHHHHHHHHHTC-CEEEEBCSS
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccCc----------CHHHHHHHHHHhCC-eEEEeccCC
Confidence            999999999999 7887777553  258999999999999876654          88999999999997 99999999 


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      ++.|++++|+++++.+.+
T Consensus       165 ~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          165 PPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SCBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999988764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=7.3e-34  Score=204.70  Aligned_cols=164  Identities=27%  Similarity=0.400  Sum_probs=147.7

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|.++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus         3 ~~~~~i~v~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVG-KSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             -CEEEEEEECSTTSS-HHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             ceeEEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            567899999999999 9999999999988888889988666 55778888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      ++|||++++++++.+ ..|+..+....++.|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||+
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~  149 (168)
T 1z2a_A           82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSCI----------KNEEAEGLAKRLKL-RFYRTSVK  149 (168)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCSS----------CHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCccccc----------CHHHHHHHHHHcCC-eEEEEecC
Confidence            999999999999998 7788888765578999999999999876553          78889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      ++.|++++|+++.+.+.+
T Consensus       150 ~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          150 EDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             TTBSSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999998864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=2.2e-33  Score=206.55  Aligned_cols=164  Identities=29%  Similarity=0.520  Sum_probs=148.3

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+..++..+.+.+|||||++.+..++..+++++|++
T Consensus        20 ~~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVG-KTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             SEEEEEEEECSTTSS-HHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             CceeEEEEECCCCCC-HHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            457899999999999 9999999999998888889988777 45677888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.+          ..++++++++.+++ +++++||
T Consensus        99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa  166 (189)
T 2gf9_A           99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERVV----------PAEDGRRLADDLGF-EFFEASA  166 (189)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEECBT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccCC----------CHHHHHHHHHHcCC-eEEEEEC
Confidence            999999999999998 78988887765 68999999999999776553          78899999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++|.|++++|+++++.+.+
T Consensus       167 ~~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          167 KENINVKQVFERLVDVICE  185 (189)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-33  Score=209.63  Aligned_cols=177  Identities=40%  Similarity=0.679  Sum_probs=146.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|.+++| ||||+++|+++.+...+.||++..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus        25 ~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  103 (207)
T 2fv8_A           25 RKKLVVVGDGACG-KTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC  103 (207)
T ss_dssp             EEEEEEEECTTSS-HHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred             CcEEEEECcCCCC-HHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence            5799999999999 999999999999888888999888877788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++..+...|+..+....++.|+++|+||+|+.+......  .....+.+..+++..+++.++..+++++||++
T Consensus       104 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~  183 (207)
T 2fv8_A          104 FSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKT  183 (207)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCC
Confidence            9999999999986688888888778999999999999976521100  00011235788899999999877899999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCc
Q 028595          162 QQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~~  181 (207)
                      |.|++++|+++++.++.++.
T Consensus       184 g~gi~el~~~l~~~i~~~~~  203 (207)
T 2fv8_A          184 KEGVREVFETATRAALQKRY  203 (207)
T ss_dssp             CTTHHHHHHHHHHHHHSCCC
T ss_pred             CCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999987643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=9.3e-34  Score=208.09  Aligned_cols=161  Identities=20%  Similarity=0.251  Sum_probs=140.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.|| +..+...+.+++..+.+.+|||+|++.+.     +++++|++++|
T Consensus        20 ~~ki~ivG~~~vG-KSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v   92 (184)
T 3ihw_A           20 ELKVGIVGNLSSG-KSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFV   92 (184)
T ss_dssp             EEEEEEECCTTSC-HHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEE
T ss_pred             eeEEEEECCCCCC-HHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEE
Confidence            5799999999999 99999999999988888888 45667888899999999999999999876     78889999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+ ..|+..+....  +++|+++|+||+|+.+...        +.+..++++++++.++..+|+++||++
T Consensus        93 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------~~v~~~~~~~~~~~~~~~~~~e~Sa~~  163 (184)
T 3ihw_A           93 FSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAANP--------RVIDDSRARKLSTDLKRCTYYETCATY  163 (184)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTBC--------CCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc--------cccCHHHHHHHHHHcCCCeEEEecCCC
Confidence            999999999998 78998887764  5799999999999953211        124889999999999844999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCC
Q 028595          162 QQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~  180 (207)
                      |.|++++|+++++.+...+
T Consensus       164 ~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          164 GLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             TBTHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            9999999999999887543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.5e-33  Score=202.89  Aligned_cols=161  Identities=20%  Similarity=0.297  Sum_probs=122.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|.+.... .+.++.+..+...+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         2 ~~ki~~vG~~~~G-KSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVG-KSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSS-HHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCC-HHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            4799999999999 99999999977643 445677777777888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+ ..|+..+....  +++|+++|+||+|+.+.+.+          ..++++.++..+++ +++++||++
T Consensus        80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~  147 (166)
T 3q72_A           80 YSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSREV----------SVDEGRACAVVFDC-KFIETSAAL  147 (166)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCCS----------CHHHHHHHHHHTTC-EEEECBGGG
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEecccccccccc----------CHHHHHHHHHHhCC-cEEEeccCC
Confidence            999999999999 77877776543  58999999999999877664          88999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      |.|++++|+++++.+..
T Consensus       148 ~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          148 HHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=209.06  Aligned_cols=166  Identities=28%  Similarity=0.469  Sum_probs=149.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus        15 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           15 YLFKLLLIGDSGVG-KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             EEEEEEEECSTTSS-HHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             cceEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            46899999999999 9999999999998888889988777 457888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||+
T Consensus        94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~  161 (196)
T 3tkl_A           94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKVV----------DYTTAKEFADSLGI-PFLETSAK  161 (196)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-CEEEECTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----------CHHHHHHHHHHcCC-cEEEEeCC
Confidence            99999999999999 78988887765 58999999999999877664          78899999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCc
Q 028595          161 TQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +|.|++++|+++++.+.....
T Consensus       162 ~g~gv~~l~~~l~~~i~~~~~  182 (196)
T 3tkl_A          162 NATNVEQSFMTMAAEIKKRMG  182 (196)
T ss_dssp             TCTTHHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999875543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1e-33  Score=203.64  Aligned_cols=162  Identities=28%  Similarity=0.421  Sum_probs=144.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         4 ~~~i~v~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            4 LHKVIMVGSGGVG-KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eEEEEEECCCCCC-HHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            5799999999999 999999999999888889999888887888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++..+ ..|+..+....  .+.|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~  150 (168)
T 1u8z_A           83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQV----------SVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCcc----------CHHHHHHHHHHcCC-eEEEeCCCC
Confidence            999999999998 78888776654  38999999999999876553          78899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      |.|++++|+++++.+.+
T Consensus       151 ~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.1e-33  Score=203.58  Aligned_cols=162  Identities=23%  Similarity=0.393  Sum_probs=145.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         3 ~~ki~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVG-KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            4799999999999 999999999999888899999988887888888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++..+ ..|+..+...  .++.|+++|+||+|+.+.+.+          ..++++.+++.++..+++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~Sa~~  150 (167)
T 1c1y_A           82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERVV----------GKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECccccccccC----------CHHHHHHHHHHccCCcEEEecCCC
Confidence            999999999998 6787777654  258999999999999876653          788999999998434999999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028595          162 QQNVKAVFDAAIKVVI  177 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~  177 (207)
                      |.|++++|+++++.+.
T Consensus       151 ~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998774

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8e-34  Score=209.58  Aligned_cols=166  Identities=25%  Similarity=0.380  Sum_probs=147.5

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus        21 ~~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           21 IRELKVCLLGDTGVG-KSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             CEEEEEEEEECTTSS-HHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCceEEEEECcCCCC-HHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            457899999999999 9999999999998888889998777 44677788899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..++++++++.+++ +++++||
T Consensus       100 ilV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa  167 (192)
T 2fg5_A          100 VIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIREV----------PLKDAKEYAESIGA-IVVETSA  167 (192)
T ss_dssp             EEEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHTTTC-EEEECBT
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999999 78988887765 58999999999999765553          78899999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +++.|++++|+++++.+.+.+
T Consensus       168 ~~~~gi~~l~~~l~~~i~~~~  188 (192)
T 2fg5_A          168 KNAINIEELFQGISRQIPPLD  188 (192)
T ss_dssp             TTTBSHHHHHHHHHHTCC---
T ss_pred             CCCcCHHHHHHHHHHHHHhhC
Confidence            999999999999998876543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2e-33  Score=204.96  Aligned_cols=164  Identities=31%  Similarity=0.479  Sum_probs=146.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|+
T Consensus        12 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   90 (181)
T 2efe_B           12 NAKLVLLGDVGAG-KSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII   90 (181)
T ss_dssp             EEEEEEECCTTSC-HHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceEEEEECcCCCC-HHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence            5799999999999 9999999999998888888888776 4577788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||++
T Consensus        91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~  158 (181)
T 2efe_B           91 VFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARKV----------TAEDAQTYAQENGL-FFMETSAKT  158 (181)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-EEEECCSSS
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccccC----------CHHHHHHHHHHcCC-EEEEEECCC
Confidence            9999999999998 78888887665 68999999999999766553          78899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCC
Q 028595          162 QQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~  180 (207)
                      |.|++++|+++++.+...+
T Consensus       159 g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          159 ATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             CTTHHHHHHHHHHTCC---
T ss_pred             CCCHHHHHHHHHHHHHhcC
Confidence            9999999999998886554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=7.4e-34  Score=208.25  Aligned_cols=165  Identities=23%  Similarity=0.378  Sum_probs=147.9

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus         8 ~~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            8 DFLFKFLVIGNAGTG-KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             SEEEEEEEEESTTSS-HHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            346899999999999 9999999999998888889988666 55778899899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||+++++++..+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..++++.+++..++ +++++||
T Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa  154 (186)
T 2bme_A           87 LLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADREV----------TFLEASRFAQENEL-MFLETSA  154 (186)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEecC
Confidence            999999999999998 78888776654 68999999999999766553          78889999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|.|++++|+++++.+.+.
T Consensus       155 ~~~~gi~~l~~~l~~~~~~~  174 (186)
T 2bme_A          155 LTGENVEEAFVQCARKILNK  174 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=9.3e-34  Score=211.29  Aligned_cols=172  Identities=52%  Similarity=0.835  Sum_probs=148.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|.++.+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus        30 ~~ki~vvG~~~~G-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  108 (204)
T 4gzl_A           30 AIKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  108 (204)
T ss_dssp             CEEEEEEESTTSS-HHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             eEEEEEECcCCCC-HHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            5799999999999 999999999999888899999988888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+...|+..+....++.|+++|+||+|+.+......  .....+.+..+++..+++.++..+++++||++
T Consensus       109 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~  188 (204)
T 4gzl_A          109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  188 (204)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCC
Confidence            9999999999995589999988778999999999999976543100  00112224788999999999987899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKVV  176 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~  176 (207)
                      |.|++++|+++++.+
T Consensus       189 g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          189 QRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-33  Score=212.00  Aligned_cols=166  Identities=25%  Similarity=0.395  Sum_probs=140.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus        12 ~~~ki~v~G~~~vG-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           12 LLFKIVLIGDSGVG-KSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             EEEEEEEESCTTSS-HHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             eeeEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            46899999999999 9999999999998888889988777 447788998999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++.+++.+ ..|+..+.... +++|++||+||+|+.+.+.+          ..++++.+++.+++ +++++||+
T Consensus        91 lV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~  158 (223)
T 3cpj_B           91 IVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRAV----------PTEESKTFAQENQL-LFTETSAL  158 (223)
T ss_dssp             EEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCCC
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78988887664 58999999999999876553          78889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCc
Q 028595          161 TQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ++.|++++|+++++.+.....
T Consensus       159 ~~~gi~~l~~~l~~~i~~~~~  179 (223)
T 3cpj_B          159 NSENVDKAFEELINTIYQKVS  179 (223)
T ss_dssp             -CCCHHHHHHHHHHHHTTCC-
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999986544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.6e-33  Score=204.83  Aligned_cols=164  Identities=23%  Similarity=0.441  Sum_probs=147.2

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|.++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus        13 ~~~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVG-KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             SEEEEEEEECSTTSS-HHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             ccceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            346899999999999 9999999999998888889988776 55677888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.+          ..++++++++.+++ +++++||
T Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa  159 (179)
T 1z0f_A           92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRDV----------TYEEAKQFAEENGL-LFLEASA  159 (179)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888887665 68999999999999766553          78899999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++|.|++++|+++++.+.+
T Consensus       160 ~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          160 KTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999988754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=7.4e-34  Score=206.95  Aligned_cols=158  Identities=20%  Similarity=0.232  Sum_probs=136.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+.. +.||+++.+...+.+++..+.+.+|||+|+++     ..+++++|++|+|
T Consensus         7 ~~ki~~vG~~~vG-KTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv   79 (178)
T 2iwr_A            7 ELRLGVLGDARSG-KSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV   79 (178)
T ss_dssp             EEEEEEECCGGGC-HHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence            5799999999999 999999999998876 78999988888888999999999999999987     4678899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc---C-CCCcEEEEeeCCCccc--CcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595           84 FSLVSRASYENVLKKWIPELQHY---S-PGVPVVLVGTKLDLRE--DKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  157 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~---~-~~~piivv~nK~D~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (207)
                      ||+++++++..+ ..|+..+...   . +++|+++|+||+|+.+  .+.          +..++++++++.++..+++++
T Consensus        80 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~  148 (178)
T 2iwr_A           80 FSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV----------VGDARARALXADMKRCSYYET  148 (178)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCC----------SCHHHHHHHHHHHSSEEEEEE
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccccCc----------CCHHHHHHHHHhhcCCeEEEE
Confidence            999999999999 6765555432   2 5899999999999953  333          488899999998854499999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ||++|.|++++|+++++.+...
T Consensus       149 Sa~~~~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          149 XATYGLNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHH
T ss_pred             eccccCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.7e-33  Score=205.09  Aligned_cols=164  Identities=26%  Similarity=0.399  Sum_probs=147.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         9 ~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v   87 (181)
T 2fn4_A            9 THKLVVVGGGGVG-KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV   87 (181)
T ss_dssp             EEEEEEEECTTSS-HHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEE
Confidence            5799999999999 999999999999888999999988888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHH-hhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i-~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++..+ ..|+..+ .... .+.|+++|+||+|+.+.+.+          ..++++.++...++ +++++||++
T Consensus        88 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~~  155 (181)
T 2fn4_A           88 FAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQV----------PRSEASAFGASHHV-AYFEASAKL  155 (181)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECBTTT
T ss_pred             EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccc----------CHHHHHHHHHHcCC-eEEEecCCC
Confidence            999999999998 6777766 3333 58999999999999876653          78889999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCC
Q 028595          162 QQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~  180 (207)
                      |.|++++|+++++.+.+.+
T Consensus       156 ~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          156 RLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             TBSHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHhh
Confidence            9999999999999987544

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=209.21  Aligned_cols=166  Identities=22%  Similarity=0.299  Sum_probs=141.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCcee-eeeeeEEEECCeEEEEEEEeCCCCccccc-cccceecCCcEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVF   80 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~   80 (207)
                      ..+||+++|.++|| ||||+++|++......+.|+.+ +.+...+.+++..+.+.+|||+|++.+.. ++..+++++|++
T Consensus        22 ~~~ki~vvG~~~vG-KSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           22 GIFKVMLVGESGVG-KSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             CEEEEEEECSTTSS-HHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             cEEEEEEECCCCCC-HHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            35799999999999 9999999986654444445554 34466788899999999999999998765 778889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      |+|||+++++++..+ ..|+..+....  +++|+++||||+|+.+.+.+          ..++++.+++.+++ +++++|
T Consensus       101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~a~~~~~-~~~e~S  168 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSREV----------SLEEGRHLAGTLSC-KHIETS  168 (195)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-EEEEEB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCCc----------CHHHHHHHHHHhCC-EEEEEc
Confidence            999999999999999 78888887654  48999999999999876653          88899999999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCc
Q 028595          159 SKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      |++|.|++++|+++++.+...+.
T Consensus       169 a~~~~~v~~lf~~l~~~i~~~~~  191 (195)
T 3cbq_A          169 AALHHNTRELFEGAVRQIRLRRG  191 (195)
T ss_dssp             TTTTBSHHHHHHHHHHHHHTTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2e-33  Score=207.25  Aligned_cols=163  Identities=25%  Similarity=0.414  Sum_probs=143.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus        20 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           20 YLFKYIIIGDTGVG-KSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             EEEEEEEESSTTSS-HHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             cceEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            46899999999999 9999999999998888888888776 457888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||+
T Consensus        99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~  166 (191)
T 2a5j_A           99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRDV----------KREEGEAFAREHGL-IFMETSAK  166 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCcccc----------CHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888887654 68999999999999766553          78899999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      ++.|++++|+++++.+.+
T Consensus       167 ~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          167 TACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=7.3e-34  Score=206.78  Aligned_cols=166  Identities=20%  Similarity=0.242  Sum_probs=145.5

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECC-eEEEEEEEeCCCCccccccccceecCCcE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADV   79 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~d~   79 (207)
                      ...+||+++|.+++| ||||+++|+++.+...+.||++.++ ...+.+++ ..+.+.+|||||++.+..++..+++++|+
T Consensus         4 ~~~~ki~v~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            4 MRQLKIVVLGDGASG-KTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCEEEEEEECCTTSS-HHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CceEEEEEECcCCCC-HHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            456899999999999 9999999999988888888987555 55777776 68999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYS---PGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                      +++|||++++++++.+ ..|+..+....   +..| +++|+||+|+.+.+.+          ..++++.+++.+++ +++
T Consensus        83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~  150 (178)
T 2hxs_A           83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI----------KPEKHLRFCQENGF-SSH  150 (178)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS----------CHHHHHHHHHHHTC-EEE
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEcccccccccc----------CHHHHHHHHHHcCC-cEE
Confidence            9999999999999988 78888886643   2445 8999999999776553          78899999999998 999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++||++|.|++++|+++++.+...+
T Consensus       151 ~~Sa~~~~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          151 FVSAKTGDSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             EECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=2e-33  Score=202.61  Aligned_cols=162  Identities=29%  Similarity=0.430  Sum_probs=145.2

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus         5 ~~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            5 CQFKLVLLGESAVG-KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             ceEEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            36799999999999 9999999999988888888888777 457778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||+++++++..+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..++++.+++..+. +++++||+
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~  151 (170)
T 1r2q_A           84 VVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRAV----------DFQEAQSYADDNSL-LFMETSAK  151 (170)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCcccccc----------CHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999998 78888776654 68999999999999766553          77889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 028595          161 TQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~  177 (207)
                      +|.|++++|++|++.+.
T Consensus       152 ~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          152 TSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TCTTHHHHHHHHHHTSC
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=3.3e-33  Score=201.63  Aligned_cols=163  Identities=23%  Similarity=0.378  Sum_probs=147.4

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|.++.+...+.|+.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus         4 ~~~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            4 LRELKVCLLGDTGVG-KSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             EEEEEEEEECCTTSS-HHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CcceEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            346899999999999 9999999999998888889998777 45778888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||++++.++..+ ..|+..+.... +..|+++|+||+|+.+.+++          ..++++.+++.++. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z0j_A           83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVREV----------MERDAKDYADSIHA-IFVETSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCcccccccc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78988887764 68999999999999876553          78889999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHh
Q 028595          160 KTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~  177 (207)
                      +++.|++++|+++.+.+.
T Consensus       151 ~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          151 KNAININELFIEISRRIP  168 (170)
T ss_dssp             TTTBSHHHHHHHHHHHCC
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-33  Score=210.57  Aligned_cols=164  Identities=20%  Similarity=0.274  Sum_probs=136.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC--CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc-ccccccceecCCcE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS--SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADV   79 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~d~   79 (207)
                      ..+||+++|.++|| ||||+++|++..  +...+.++..+.+...+.+++..+.+.+|||+|++. +..+...+++.+|+
T Consensus        36 ~~~kVvlvG~~~vG-KSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           36 TYYRVVLIGEQGVG-KSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CEEEEEEECCTTSS-HHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CceEEEEECCCCCC-HHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            35899999999999 999999999654  344444433344566788899999999999999887 56677888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  157 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (207)
                      +|+|||++++++|+.+ ..|...+....  +++|+++||||+|+.+.+.+          ..++++.++..+++ +|+++
T Consensus       115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v----------~~~e~~~~a~~~~~-~~~e~  182 (211)
T 2g3y_A          115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCREV----------SVSEGRACAVVFDC-KFIET  182 (211)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCceE----------eHHHHHHHHHHcCC-EEEEE
Confidence            9999999999999998 67877776532  58999999999999766553          77888999999998 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ||++|.||+++|+++++.+...
T Consensus       183 SAk~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          183 SAAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999988543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.8e-34  Score=210.76  Aligned_cols=165  Identities=25%  Similarity=0.405  Sum_probs=137.6

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus        23 ~~~~ki~v~G~~~~G-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           23 DFLFKFLVIGSAGTG-KSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CEEEEEEEEESTTSS-HHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             CcceEEEEECcCCCC-HHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            456899999999999 9999999999998888889988666 55777889899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..++++.+++..++ +++++||
T Consensus       102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~SA  169 (200)
T 2o52_A          102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPEREV----------TFLEASRFAQENEL-MFLETSA  169 (200)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEEECT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCccccccc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888876654 68999999999999766553          77889999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|.|++++|.++++.+...
T Consensus       170 ~~g~gi~~l~~~l~~~i~~~  189 (200)
T 2o52_A          170 LTGENVEEAFLKCARTILNK  189 (200)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6e-33  Score=202.25  Aligned_cols=166  Identities=27%  Similarity=0.483  Sum_probs=139.1

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   79 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~   79 (207)
                      +..+||+++|.+++| ||||+++|+++.+. ..+.+|.+..+.. .+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus         8 ~~~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVG-KTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             SEEEEEEEECSTTSS-HHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CcceEEEEECcCCCC-HHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            346899999999999 99999999998874 4677888877744 56789999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           80 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      +++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++|
T Consensus        87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~S  154 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERVV----------KREDGEKLAKEYGL-PFMETS  154 (180)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCCS----------CHHHHHHHHHHHTC-CEEECC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCccccc----------CHHHHHHHHHHcCC-eEEEEe
Confidence            9999999999999998 78888887765 58999999999999876653          78889999999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCC
Q 028595          159 SKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      |+++.|++++|+++.+.+....
T Consensus       155 a~~~~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          155 AKTGLNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999987653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.3e-33  Score=202.45  Aligned_cols=163  Identities=21%  Similarity=0.310  Sum_probs=129.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCcee-eeeeeEEEECCeEEEEEEEeCCCCccccc-cccceecCCcEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFV   81 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~i   81 (207)
                      .+||+++|.+++| ||||+++|.+......+.++.+ +.+...+.+++..+.+.+||++|++.+.. ++..+++++|+++
T Consensus         2 ~~ki~ivG~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i   80 (169)
T 3q85_A            2 VFKVMLVGESGVG-KSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL   80 (169)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred             cEEEEEECCCCCC-HHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence            4699999999999 9999999998776555444444 33466788899999999999999999876 7788899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCC--CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +|||++++++++.+ ..|+..+....+  ++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa  148 (169)
T 3q85_A           81 IVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSREV----------SLEEGRHLAGTLSC-KHIETSA  148 (169)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECBT
T ss_pred             EEEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhcccC----------CHHHHHHHHHHcCC-cEEEecC
Confidence            99999999999999 788887776553  8999999999999876654          88999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|.|++++|+++++.+..+
T Consensus       149 ~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          149 ALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TTTBSHHHHHHHHHHHHHHT
T ss_pred             ccCCCHHHHHHHHHHHHHhc
Confidence            99999999999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=4.4e-33  Score=207.13  Aligned_cols=164  Identities=26%  Similarity=0.507  Sum_probs=148.5

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+..++..+.+.+|||||++.+..++..+++++|++
T Consensus         6 ~~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            6 DYMFKILIIGNSSVG-KTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             SEEEEEEEECSTTSS-HHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             ceeeEEEEECCCCCC-HHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            457899999999999 9999999999998888889988777 45777888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||
T Consensus        85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa  152 (203)
T 1zbd_A           85 ILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERVV----------SSERGRQLADHLGF-EFFEASA  152 (203)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCCS----------CHHHHHHHHHHHTC-EEEECBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCccccc----------CHHHHHHHHHHCCC-eEEEEEC
Confidence            999999999999998 78988887765 58999999999999776553          78899999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++|.|++++|+++++.+.+
T Consensus       153 ~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          153 KDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             TTTBSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.8e-33  Score=201.85  Aligned_cols=164  Identities=28%  Similarity=0.422  Sum_probs=144.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||+++|.++.+...+.||.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus         3 ~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            3 SIKLVLLGEAAVG-KSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            4799999999999 9999999999998888889988777 4577888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+...       .+.+..++++.+++.+++ +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~  152 (170)
T 1ek0_A           82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 78888877655 6899999999999976521       122478889999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028595          162 QQNVKAVFDAAIKVVI  177 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~  177 (207)
                      |.|++++|+++++.+.
T Consensus       153 ~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          153 GENVNDVFLGIGEKIP  168 (170)
T ss_dssp             CTTHHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999987664

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=203.27  Aligned_cols=163  Identities=20%  Similarity=0.280  Sum_probs=131.5

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeee-eeeEEEECCeEEEEEEEeCCCCcc--ccccccceecCCc
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQED--YNRLRPLSYRGAD   78 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~--~~~~~~~~~~~~d   78 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+. +.+.+ +...+.+++..+.+.+|||||++.  +..+...+++.+|
T Consensus         2 ~~~~ki~i~G~~~vG-KSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   79 (175)
T 2nzj_A            2 MALYRVVLLGDPGVG-KTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGS   79 (175)
T ss_dssp             CCEEEEEEECCTTSS-HHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCS
T ss_pred             ceEEEEEEECCCCcc-HHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCC
Confidence            346899999999999 999999999988765544 44434 466788899999999999999988  5667788899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595           79 VFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  156 (207)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  156 (207)
                      ++++|||++++++++.+ ..|+..+....  +++|+++|+||+|+.+.+.+          ..++++.++..+++ ++++
T Consensus        80 ~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~  147 (175)
T 2nzj_A           80 AYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCREV----------SVEEGRACAVVFDC-KFIE  147 (175)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCCS----------CHHHHHHHHHHHTS-EEEE
T ss_pred             EEEEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhcccccc----------CHHHHHHHHHHcCC-eEEE
Confidence            99999999999999998 78888777653  58999999999999876653          78889999999998 9999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhC
Q 028595          157 CSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +||++|.|++++|+++++.+..
T Consensus       148 ~Sa~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          148 TSATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.6e-33  Score=202.17  Aligned_cols=163  Identities=28%  Similarity=0.463  Sum_probs=139.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|.++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus         2 ~~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            2 SIMKILLIGDSGVG-KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             CEEEEEEEESTTSS-HHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CceEEEEECcCCCC-HHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            46899999999999 9999999999998888889988776 456777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+ +.          +..++++.+++.+++ +++++||+
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  147 (170)
T 1g16_A           81 LVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-RV----------VTADQGEALAKELGI-PFIESSAK  147 (170)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTT-CC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCc-Cc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999998 78888887765 5899999999999943 33          377889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.|++++|+++.+.+.++
T Consensus       148 ~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          148 NDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TTBSHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.3e-33  Score=206.22  Aligned_cols=164  Identities=25%  Similarity=0.399  Sum_probs=147.3

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus        23 ~~~~ki~v~G~~~~G-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           23 NFVFKVVLIGESGVG-KTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             SEEEEEEEESSTTSS-HHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             CcceEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            346899999999999 9999999999998888889988777 45777888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.+.+          ..++++.+++..++ +++++||
T Consensus       102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa  169 (193)
T 2oil_A          102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQAREV----------PTEEARMFAENNGL-LFLETSA  169 (193)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEEECT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCccccccc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888887654 58999999999999776553          78889999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++|.|++++|+++++.+.+
T Consensus       170 ~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          170 LDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=207.13  Aligned_cols=164  Identities=26%  Similarity=0.444  Sum_probs=139.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus        25 ~~~ki~vvG~~~~G-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           25 FKLQVIIIGSRGVG-KTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             EEEEEEEECSTTSS-HHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CceEEEEECCCCCC-HHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            46899999999999 9999999999998888888887666 557788898999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.+          ..++++.+++.++..+++++||+
T Consensus       104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v----------~~~~~~~~~~~~~~~~~~~~SA~  172 (192)
T 2il1_A          104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDREI----------TRQQGEKFAQQITGMRFCEASAK  172 (192)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHTSTTCEEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccccccc----------CHHHHHHHHHhcCCCeEEEEeCC
Confidence            99999999999998 78988887765 58999999999999776653          78889999988633499999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      +|.|++++|+++++.+.+
T Consensus       173 ~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          173 DNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988763

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=3.5e-33  Score=200.67  Aligned_cols=161  Identities=25%  Similarity=0.424  Sum_probs=145.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||++++.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         3 ~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVG-KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCC-HHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            5799999999999 999999999999888888999888878888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+ ..|...+....  ++.|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T 1kao_A           82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESEREV----------SSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcccccccC----------CHHHHHHHHHHhCC-CEEEecCCC
Confidence            999999999998 67776665543  58999999999999766553          78889999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028595          162 QQNVKAVFDAAIKVVI  177 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~  177 (207)
                      |.|++++|+++++.+.
T Consensus       150 ~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=6.4e-33  Score=203.05  Aligned_cols=162  Identities=28%  Similarity=0.423  Sum_probs=147.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus        18 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (187)
T 2a9k_A           18 LHKVIMVGSGGVG-KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   96 (187)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence            5799999999999 999999999999888899999988888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++..+ ..|+..+....  .++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||++
T Consensus        97 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~  164 (187)
T 2a9k_A           97 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQV----------SVEEAKNRAEQWNV-NYVETSAKT  164 (187)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCcc----------CHHHHHHHHHHcCC-eEEEeCCCC
Confidence            999999999998 78887776654  38999999999999776553          78899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      +.|++++|+++++.+..
T Consensus       165 ~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          165 RANVDKVFFDLMREIRA  181 (187)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.3e-34  Score=211.40  Aligned_cols=165  Identities=27%  Similarity=0.499  Sum_probs=149.3

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus        21 ~~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVG-KTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EECEEEEEEESTTSS-HHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             CeeeEEEEECCCCcC-HHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            357899999999999 9999999999998888888888666 45777788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||
T Consensus       100 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa  167 (191)
T 3dz8_A          100 ILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERVV----------PTEKGQLLAEQLGF-DFFEASA  167 (191)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEECBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccccc----------CHHHHHHHHHHcCC-eEEEEEC
Confidence            999999999999998 78999988766 68999999999999776654          88899999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|.|++++|+++++.+.+.
T Consensus       168 ~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          168 KENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             TTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999988654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.3e-33  Score=206.87  Aligned_cols=161  Identities=29%  Similarity=0.439  Sum_probs=146.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++. ..++..+++++|++++|
T Consensus        28 ~~ki~v~G~~~vG-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv  105 (196)
T 2atv_A           28 EVKLAIFGRAGVG-KSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLV  105 (196)
T ss_dssp             CEEEEEECCTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEE
Confidence            5799999999999 999999999999988899999988887888899999999999999988 77888999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+ ..|+..+....  +++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||++
T Consensus       106 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~~  173 (196)
T 2atv_A          106 YDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQV----------STEEGEKLATELAC-AFYECSACT  173 (196)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTS-EEEECCTTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECccccccccc----------CHHHHHHHHHHhCC-eEEEECCCc
Confidence            999999999998 77887776543  58999999999999876553          78899999999998 999999999


Q ss_pred             CC-CHHHHHHHHHHHHhC
Q 028595          162 QQ-NVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~-~i~~~f~~i~~~~~~  178 (207)
                      |. |++++|+++++.+.+
T Consensus       174 g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          174 GEGNITEIFYELCREVRR  191 (196)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            99 999999999998864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=4.5e-33  Score=205.77  Aligned_cols=164  Identities=20%  Similarity=0.288  Sum_probs=133.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCC--CCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc-ccccccceecCCcEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR--SSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADVF   80 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~d~~   80 (207)
                      .+||+++|.++|| ||||+++|++.  .+...+.++..+.+...+.+++..+.+.+|||+|++. ++.+...+++.+|++
T Consensus         6 ~~kv~lvG~~~vG-KSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~   84 (192)
T 2cjw_A            6 YYRVVLIGEQGVG-KSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   84 (192)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred             eEEEEEECCCCCC-HHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence            5799999999999 99999999853  3444444433344566788899999999999999876 566788889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      ++|||++++++++.+ ..|...+....  +++|+++|+||+|+.+.+.+          ..++++.++..+++ +|+++|
T Consensus        85 i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v----------~~~~~~~~a~~~~~-~~~e~S  152 (192)
T 2cjw_A           85 LIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXREV----------SVSEGRAXAVVFDX-KFIETS  152 (192)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhccccc----------cHHHHHHHHHHhCC-ceEEec
Confidence            999999999999998 77877776542  57999999999999765543          77888899998987 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCC
Q 028595          159 SKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      |++|.||+++|+++++.+....
T Consensus       153 A~~g~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          153 AAVQHNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHhhc
Confidence            9999999999999999886443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=4.5e-33  Score=207.44  Aligned_cols=164  Identities=26%  Similarity=0.426  Sum_probs=142.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus         7 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            7 VLLKVIILGDSGVG-KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             CEEEEEEECCTTSS-HHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             cceEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            46899999999999 9999999999998888889987666 557777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  156 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  156 (207)
                      +|||++++.++..+ ..|+..+....     ++.|+++|+||+|+.+ +.          +..++++.+++.....++++
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~~~~~~  153 (207)
T 1vg8_A           86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQ----------VATKRAQAWCYSKNNIPYFE  153 (207)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CC----------SCHHHHHHHHHHTTSCCEEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcc-cc----------cCHHHHHHHHHhcCCceEEE
Confidence            99999999999998 78877765443     4789999999999973 33          37788888988443338999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028595          157 CSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +||++|.|++++|++|++.+...
T Consensus       154 ~Sa~~g~gi~~l~~~l~~~~~~~  176 (207)
T 1vg8_A          154 TSAKEAINVEQAFQTIARNALKQ  176 (207)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999988643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.8e-33  Score=206.51  Aligned_cols=169  Identities=25%  Similarity=0.374  Sum_probs=136.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus        27 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  105 (199)
T 2p5s_A           27 KAYKIVLAGDAAVG-KSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL  105 (199)
T ss_dssp             -CEEEEEESSTTSS-HHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred             CCeEEEEECcCCCC-HHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence            46899999999999 9999999999998888889988776 457888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++.++..+ ..|+..+.... +++|+++|+||+|+.+....    ...+.+..++++.+++.+++ +++++||+
T Consensus       106 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~v~~~~~~~~~~~~~~-~~~~~SA~  179 (199)
T 2p5s_A          106 LLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAAT----EGQKCVPGHFGEKLAMTYGA-LFCETSAK  179 (199)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHH----TTCCCCCHHHHHHHHHHHTC-EEEECCTT
T ss_pred             EEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----ccccccCHHHHHHHHHHcCC-eEEEeeCC
Confidence            99999999999998 78988887665 58999999999999632110    01122578899999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      +|.|++++|.++++.+.+
T Consensus       180 ~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          180 DGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TCTTHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-32  Score=201.87  Aligned_cols=163  Identities=26%  Similarity=0.490  Sum_probs=147.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|+
T Consensus        15 ~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           15 TLKILIIGESGVG-KSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            5799999999999 9999999999998888889988776 4577889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||++++.++..+ ..|+..+....  +++|+++|+||+|+.+. .          +..+++..+++.+++ +++++||+
T Consensus        94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~  160 (195)
T 1x3s_A           94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENR-E----------VDRNEGLKFARKHSM-LFIEASAK  160 (195)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSC-C----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCccc-c----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence            9999999999998 78988887765  57999999999999533 2          377889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCC
Q 028595          161 TQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++.|++++|+++++.+.+.+
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          161 TCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHTSG
T ss_pred             CCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999998664

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6e-33  Score=200.49  Aligned_cols=164  Identities=24%  Similarity=0.362  Sum_probs=144.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+..++..+.+.+|||||++.+..++..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVG-KSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSS-HHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            35799999999999 99999999999988888899888887777888889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |||++++++++.+ ..|+..+.+..   ++.|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||
T Consensus        81 v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa  148 (172)
T 2erx_A           81 VYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSREV----------QSSEAEALARTWKC-AFMETSA  148 (172)
T ss_dssp             EEETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTC-EEEECBT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEcccccccccc----------CHHHHHHHHHHhCC-eEEEecC
Confidence            9999999999988 67776665532   57999999999999876653          77888999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|.|++++|+++++.+..+
T Consensus       149 ~~~~gi~~l~~~l~~~~~~~  168 (172)
T 2erx_A          149 KLNHNVKELFQELLNLEKRR  168 (172)
T ss_dssp             TTTBSHHHHHHHHHHTCCSS
T ss_pred             CCCcCHHHHHHHHHHHHhhh
Confidence            99999999999999876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1e-32  Score=200.61  Aligned_cols=162  Identities=30%  Similarity=0.422  Sum_probs=144.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus        14 ~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           14 KFKLVFLGEQSVG-KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            4799999999999 9999999999988888888888665 5577889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||++++.++..+ ..|+..+.... +++|+++|+||+|+.+.+.+          ..++++.+++.++. +++++||++
T Consensus        93 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~  160 (179)
T 2y8e_A           93 VYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV----------STEEGERKAKELNV-MFIETSAKA  160 (179)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCcC----------CHHHHHHHHHHcCC-eEEEEeCCC
Confidence            9999999999998 78887776544 58999999999999876553          78889999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      +.|++++|+++.+.+..
T Consensus       161 ~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          161 GYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             TBSHHHHHHHHHHTCC-
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999887643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2.2e-32  Score=198.75  Aligned_cols=164  Identities=29%  Similarity=0.464  Sum_probs=140.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.||.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus         6 ~~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   84 (177)
T 1wms_A            6 SLFKVILLGDGGVG-KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   84 (177)
T ss_dssp             EEEEEEEECCTTSS-HHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             ceeEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence            36799999999999 9999999999988888889988776 557888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  156 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  156 (207)
                      +|||+++++++..+ ..|+..+....     +++|+++|+||+|+.+ +.          +..++++++++..+..++++
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~----------~~~~~~~~~~~~~~~~~~~~  152 (177)
T 1wms_A           85 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQ----------VSTEEAQAWCRDNGDYPYFE  152 (177)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CS----------SCHHHHHHHHHHTTCCCEEE
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccc-cc----------cCHHHHHHHHHhcCCceEEE
Confidence            99999999999998 78887776533     5789999999999973 33          37888999998554449999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028595          157 CSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +||++|.|++++|+++++.+.+.
T Consensus       153 ~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          153 TSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=6.8e-33  Score=204.06  Aligned_cols=164  Identities=27%  Similarity=0.418  Sum_probs=145.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee--eEEEECCe---------EEEEEEEeCCCCcccccccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS--ANVVAEGT---------TVNLGLWDTAGQEDYNRLRP   71 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~i~D~~G~~~~~~~~~   71 (207)
                      ..+||+++|.+++| ||||+++|.++.+...+.+|.+..+.  ..+..++.         .+.+.+|||||++.+..++.
T Consensus        10 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   88 (195)
T 3bc1_A           10 YLIKFLALGDSGVG-KTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT   88 (195)
T ss_dssp             EEEEEEEECSTTSS-HHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred             eeEEEEEECCCCCC-HHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence            36899999999999 99999999999888888899887775  35556655         78999999999999999999


Q ss_pred             ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      .+++++|++|+|||++++.++..+ ..|+..+....  +++|+++|+||+|+.+.+.+          ..++++++++.+
T Consensus        89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~  157 (195)
T 3bc1_A           89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRAV----------KEEEARELAEKY  157 (195)
T ss_dssp             HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccc----------CHHHHHHHHHHc
Confidence            999999999999999999999998 78888887655  58999999999999776553          788999999999


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++ +++++||+++.|++++|++|++.+.+.
T Consensus       158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          158 GI-PYFETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             TC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            98 999999999999999999999998754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=5.4e-33  Score=206.95  Aligned_cols=164  Identities=23%  Similarity=0.260  Sum_probs=109.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCC--CCCccccCceeeee-eeEEEECCe--EEEEEEEeCCCCccccccccceecCCc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR--SSIWDYIPTVFDNF-SANVVAEGT--TVNLGLWDTAGQEDYNRLRPLSYRGAD   78 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~~~~~t~~~~~-~~~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~~~~d   78 (207)
                      .+||+++|.+++| ||||+++|+++  .+...+.+|++.++ ...+.+++.  .+.+.+|||||++.+..++..+++++|
T Consensus        20 ~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   98 (208)
T 2yc2_C           20 RCKVAVVGEATVG-KSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY   98 (208)
T ss_dssp             EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence            5799999999999 99999999999  77888889988444 667788887  899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCC----CCcEEEEeeCCCccc-CcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           79 VFVLAFSLVSRASYENVLKKWIPELQHYSP----GVPVVLVGTKLDLRE-DKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piivv~nK~D~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      ++|+|||++++++++.+ ..|+..+....+    ++|+++|+||+|+.+ .+.          +..++++.+++.+++ +
T Consensus        99 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~~-~  166 (208)
T 2yc2_C           99 YAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNTL-D  166 (208)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTTC-E
T ss_pred             EEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcCC-E
Confidence            99999999999999999 789988877654    899999999999977 554          378999999999997 9


Q ss_pred             EEEeccCC-CCCHHHHHHHHHHHHhCCC
Q 028595          154 YIECSSKT-QQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       154 ~~e~Sa~~-~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++++||++ +.|++++|+++++.+.+..
T Consensus       167 ~~~~Sa~~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          167 FFDVSANPPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             EEECCC-------CHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence            99999999 9999999999999887544

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.1e-32  Score=202.77  Aligned_cols=161  Identities=23%  Similarity=0.350  Sum_probs=142.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc-ccccceecCCcEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFV   81 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~d~~i   81 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+. .++..+++++|++|
T Consensus        20 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii   98 (189)
T 1z06_A           20 IFKIIVIGDSNVG-KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   98 (189)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             eEEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence            5799999999999 9999999999998888889988776 5577889989999999999999998 88999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +|||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||
T Consensus        99 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa  166 (189)
T 1z06_A           99 FVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQV----------PTDLAQKFADTHSM-PLFETSA  166 (189)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-CEEECCS
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccee----------CHHHHHHHHHHcCC-EEEEEeC
Confidence            99999999999998 77888877653  58999999999999776553          78899999999998 9999999


Q ss_pred             CCC---CCHHHHHHHHHHHHh
Q 028595          160 KTQ---QNVKAVFDAAIKVVI  177 (207)
Q Consensus       160 ~~~---~~i~~~f~~i~~~~~  177 (207)
                      +++   .|++++|+++++.+.
T Consensus       167 ~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          167 KNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             SSGGGGSCHHHHHHHHC----
T ss_pred             CcCCcccCHHHHHHHHHHHHh
Confidence            999   999999999988764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=4.2e-32  Score=199.71  Aligned_cols=162  Identities=30%  Similarity=0.436  Sum_probs=136.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|..++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus        21 ~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (190)
T 3con_A           21 EYKLVVVGAGGVG-KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   99 (190)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred             eeEEEEECcCCCC-HHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence            4799999999999 999999999998888888998888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++..++..+ ..|+..+....  .++|+++|+||+|+.+. .          +..++++++++.+++ +++++||++
T Consensus       100 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  166 (190)
T 3con_A          100 FAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTR-T----------VDTKQAHELAKSYGI-PFIETSAKT  166 (190)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCC-C----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCcc-c----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            999999999998 78888876654  37999999999999762 2          378899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028595          162 QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~  179 (207)
                      +.|++++|+++++.+.+.
T Consensus       167 ~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          167 RQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=2.7e-33  Score=210.34  Aligned_cols=165  Identities=32%  Similarity=0.491  Sum_probs=146.1

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCe----------EEEEEEEeCCCCccccccc
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGT----------TVNLGLWDTAGQEDYNRLR   70 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~l~i~D~~G~~~~~~~~   70 (207)
                      +..+||+++|.+++| ||||+++|+++.+...+.+|.+..+ ...+.+++.          .+.+.||||||++.+..++
T Consensus        23 ~~~~ki~vvG~~~~G-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           23 DYLIKLLALGDSGVG-KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             SEEEEEEEESCTTSS-HHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             ceeEEEEEECcCCCC-HHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            457899999999999 9999999999998888888888776 446666665          7899999999999999999


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                      ..+++++|++|+|||++++.++..+ ..|+..+....  .++|+++|+||+|+.+.+.+          ..++++++++.
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----------~~~~~~~~~~~  170 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQREV----------NERQARELADK  170 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS----------CHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCcccccccc----------CHHHHHHHHHH
Confidence            9999999999999999999999998 78888876655  58999999999999776553          78899999999


Q ss_pred             hCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       149 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++ +++++||+++.|++++|+++++.+.+.
T Consensus       171 ~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          171 YGI-PYFETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             TTC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCC-cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            998 899999999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=4.8e-32  Score=194.38  Aligned_cols=161  Identities=29%  Similarity=0.445  Sum_probs=145.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|.++.+...+.+|.+..+...+..++..+.+.+||+||++.+..++..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~G-Kssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVG-KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCC-HHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            4699999999999 999999999998888888998888877888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++..+ ..|+..+....  .+.|+++|+||+|+.+..           +..++++++++.+++ +++++||++
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (166)
T 2ce2_X           82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKT  148 (166)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCC
Confidence            999999999998 78888876654  379999999999997632           277889999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      +.|++++|+++++.+.+
T Consensus       149 ~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.6e-32  Score=200.13  Aligned_cols=166  Identities=27%  Similarity=0.433  Sum_probs=129.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.||.+.++ ...+.++ +..+.+.+|||||++.+..++..+++++|++
T Consensus         7 ~~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (182)
T 1ky3_A            7 NILKVIILGDSGVG-KTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC   85 (182)
T ss_dssp             CEEEEEEECCTTSS-HHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred             ceEEEEEECCCCCC-HHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence            36899999999999 9999999999998888888887665 4466666 5678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                      |+|||++++.+++.+ ..|+..+....     +++|+++|+||+|+.+....         +..++++.+++..+..+++
T Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---------v~~~~~~~~~~~~~~~~~~  155 (182)
T 1ky3_A           86 VLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI---------VSEKSAQELAKSLGDIPLF  155 (182)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC---------SCHHHHHHHHHHTTSCCEE
T ss_pred             EEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc---------CCHHHHHHHHHhcCCCeEE
Confidence            999999999999998 78877775432     57999999999999644321         3788899999855444899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++||++|.|++++|+++++.+.++
T Consensus       156 ~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          156 LTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999988643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=209.13  Aligned_cols=163  Identities=29%  Similarity=0.486  Sum_probs=136.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus        32 ~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           32 YLFKLLLIGDSGVG-KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             EEEEEEEECCTTSC-CTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             cceEEEEECCCCCC-HHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            46899999999999 9999999999998888888888776 457788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++++++.+ ..|+..+.... .++|+++|+||+|+.+.+.+          ..++++.+++.+++ +++++||+
T Consensus       111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~vSA~  178 (199)
T 3l0i_B          111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKVV----------DYTTAKEFADSLGI-PFLETSAK  178 (199)
T ss_dssp             ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CCC----------CSCC-CHHHHTTTC-CBCCCCC-
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCccccC----------CHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999999 78998887765 48999999999999776553          55677889999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      ++.|++++|+++++.+..
T Consensus       179 ~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          179 NATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             --HHHHHHHHHHTTTTTT
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999877654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.98  E-value=1e-31  Score=200.98  Aligned_cols=162  Identities=28%  Similarity=0.468  Sum_probs=144.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus        19 ~~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           19 SIMKILLIGDSGVG-KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             -CEEEEEECSTTSS-HHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             cceEEEEECCCCCC-HHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            46899999999999 9999999999988888889988777 457788998999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+. .+.          +..++++.+++.+++ +++++||+
T Consensus        98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  164 (213)
T 3cph_A           98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME-TRV----------VTADQGEALAKELGI-PFIESSAK  164 (213)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCS-SCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCc-ccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888887665 479999999999993 333          377889999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      ++.|++++|.++.+.+.+
T Consensus       165 ~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          165 NDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             TTBSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.98  E-value=1.4e-31  Score=198.44  Aligned_cols=160  Identities=25%  Similarity=0.386  Sum_probs=139.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeE------------------------------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTT------------------------------   52 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~------------------------------   52 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|++..+ ...+.+++..                              
T Consensus         7 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            7 SYKTVLLGESSVG-KSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SEEEEEECCTTSS-HHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            6899999999999 9999999999998888889988766 4456666655                              


Q ss_pred             -------EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595           53 -------VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        53 -------~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~  125 (207)
                             +.+.+|||||++.+..++..+++.+|++++|||++++.++..+ ..|+..+.... +.|+++|+||+| ...+
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~-~~piilv~NK~D-~~~~  162 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISS-NYIIILVANKID-KNKF  162 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHS-CCEEEEEEECTT-CC-C
T ss_pred             ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhC-CCcEEEEEECCC-cccc
Confidence                   8999999999999999999999999999999999999999998 78888887654 399999999999 4333


Q ss_pred             ccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          126 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      .          +..++++++++.++. +++++||+++.|++++|+++++.+.+
T Consensus       163 ~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          163 Q----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             C----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             c----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            3          378899999999998 99999999999999999999988753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=2.4e-32  Score=205.90  Aligned_cols=164  Identities=24%  Similarity=0.359  Sum_probs=145.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+.+.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus        14 ~~~ki~v~G~~~~G-KSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   92 (221)
T 3gj0_A           14 VQFKLVLVGDGGTG-KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   92 (221)
T ss_dssp             CEEEEEEEECTTSS-HHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred             cceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence            35799999999999 9999999998887788888887666 557788899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      +|||++++.++..+ ..|+..+....+++|+++|+||+|+.+...            ..++..+++..++ +++++||++
T Consensus        93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa~~  158 (221)
T 3gj0_A           93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKS  158 (221)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------------CGGGCCHHHHHTC-EEEECBGGG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc------------cHHHHHHHHHcCC-EEEEEeCCC
Confidence            99999999999999 789999988778999999999999976542            2255667888888 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCc
Q 028595          162 QQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~~  181 (207)
                      |.|++++|+++++.+...+.
T Consensus       159 ~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          159 NYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             TBTTTHHHHHHHHHHHTCTT
T ss_pred             CCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999987643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=1e-31  Score=201.87  Aligned_cols=166  Identities=25%  Similarity=0.359  Sum_probs=142.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEE-CCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      ..+||+++|.+++| ||||+++|+++.+...+.+|.+..+.. .+.. ++..+.+.+|||||++.+..++..++.++|++
T Consensus        10 ~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A           10 LTYKICLIGDGGVG-KTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             CEEEEEEECCTTSS-HHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             CccEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            46899999999999 999999999999888888888766644 3333 34458999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.+          ..++++.+++..++ +++++||
T Consensus        89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa  156 (218)
T 4djt_A           89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI----------SKKLVMEVLKGKNY-EYFEISA  156 (218)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC----C----------CHHHHHHHTTTCCC-EEEEEBT
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccccc----------CHHHHHHHHHHcCC-cEEEEec
Confidence            999999999999999 78988887655 46999999999999876553          78889999998888 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCc
Q 028595          160 KTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ++|.|++++|+++++.+.....
T Consensus       157 ~~g~gv~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          157 KTAHNFGLPFLHLARIFTGRPD  178 (218)
T ss_dssp             TTTBTTTHHHHHHHHHHHCCTT
T ss_pred             CCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999987643

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=2.8e-31  Score=211.19  Aligned_cols=176  Identities=51%  Similarity=0.824  Sum_probs=152.4

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.+++| ||||+++++++.+...+.+|+++.+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus       154 ~~~~i~i~G~~~~G-Kssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSS-HHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCC-hHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            35799999999999 99999999999988889999998888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||++++.++..+...|+..+....+++|+++|+||+|+.+......  .....+.+..++++.+++.++..+++++||+
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  312 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence            99999999999985578888888777999999999999965421000  0011233588899999999997689999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.|++++|+.+++.++.+
T Consensus       313 ~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          313 TQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TCTTHHHHHHHHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            9999999999999998765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=2.1e-32  Score=202.01  Aligned_cols=162  Identities=18%  Similarity=0.170  Sum_probs=136.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCcc-----------ccCceeeeee-eEE-EECCeEEEEEEEeCCCCcccccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWD-----------YIPTVFDNFS-ANV-VAEGTTVNLGLWDTAGQEDYNRL   69 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~-----------~~~t~~~~~~-~~~-~~~~~~~~l~i~D~~G~~~~~~~   69 (207)
                      ..+||+++|.+++| ||||++.+. +.+...           +.||.+.++. ..+ .+++..+.+.+|||||++.+..+
T Consensus        13 ~~~ki~vvG~~~~G-KssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   90 (198)
T 3t1o_A           13 INFKIVYYGPGLSG-KTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS   90 (198)
T ss_dssp             EEEEEEEECSTTSS-HHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred             cccEEEEECCCCCC-HHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence            46899999999999 999996554 444444           3456665553 344 66788999999999999999999


Q ss_pred             ccceecCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH
Q 028595           70 RPLSYRGADVFVLAFSLV------SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE  143 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~  143 (207)
                      +..+++++|++|+|||++      +.+++..+ ..|+..+....+++|+++|+||+|+.+.            +..++++
T Consensus        91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~  157 (198)
T 3t1o_A           91 RKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEMVR  157 (198)
T ss_dssp             HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHHHH
T ss_pred             HHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHHHH
Confidence            999999999999999999      66788887 6788887555578999999999999664            2788999


Q ss_pred             HHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          144 ELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       144 ~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++++.+++.+++++||++|.|++++|+++++.+.+.
T Consensus       158 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          158 AVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             HHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            999999876899999999999999999999988754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.6e-33  Score=209.79  Aligned_cols=172  Identities=52%  Similarity=0.843  Sum_probs=147.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.+|.++.+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus        30 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv  108 (204)
T 3th5_A           30 AIKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC  108 (204)
Confidence            5799999999999 999999999999888889999888877778888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC--CCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++..+...|+..+....+++|+++|+||+|+.+.......  ....+.+..+++..+++.++..+++++||++
T Consensus       109 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~  188 (204)
T 3th5_A          109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  188 (204)
Confidence            99999999999844888888776678999999999999765321100  0011234677888899988876899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKVV  176 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~  176 (207)
                      |.|++++|+++++.+
T Consensus       189 g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          189 QRGLKTVFDEAIRAV  203 (204)
Confidence            999999999998765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=2.6e-31  Score=196.65  Aligned_cols=164  Identities=14%  Similarity=0.087  Sum_probs=126.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..||+++|.+++| ||||+++|+++.+.. .+.||++..+. .+  ++..+.+.+|||||++.+..++..+++++|++|+
T Consensus        17 ~~ki~v~G~~~~G-KSsl~~~l~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   92 (199)
T 4bas_A           17 KLQVVMCGLDNSG-KTTIINQVKPAQSSSKHITATVGYNVE-TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF   92 (199)
T ss_dssp             EEEEEEECCTTSC-HHHHHHHHSCCC----CCCCCSSEEEE-EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhcCCCcccccccccceeEE-EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence            5799999999999 999999999999887 78899884332 23  3445889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC---------CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH-HHHHHhCCc
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS---------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQIGAS  152 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~---------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~  152 (207)
                      |||+++++++..+ ..|+..+....         +++|+++|+||+|+.+....       ..+...... .+++..++ 
T Consensus        93 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~-  163 (199)
T 4bas_A           93 VVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA-------AELVEILDLTTLMGDHPF-  163 (199)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH-------HHHHHHHTHHHHHTTSCE-
T ss_pred             EEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH-------HHHHHHhcchhhccCCee-
Confidence            9999999999999 56666654431         28999999999999765321       000111111 11234555 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +++++||++|.|++++|++|++.+....
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          164 VIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=3.1e-30  Score=191.34  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=121.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|.+++| ||||+++|.++.+. .+.||.+.. ...+.+++  +.+.+|||||++.++.++..+++++|++++|
T Consensus        25 ~~ki~lvG~~~vG-KSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (198)
T 1f6b_A           25 TGKLVFLGLDNAG-KTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL   99 (198)
T ss_dssp             CEEEEEEEETTSS-HHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence            5799999999999 99999999988864 567887764 34666777  7899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh------------
Q 028595           84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------------  149 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------  149 (207)
                      ||+++++++..+ ..|+..+.+.  .+++|+++|+||+|+.+.            +..+++++++...            
T Consensus       100 ~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  166 (198)
T 1f6b_A          100 VDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSLK  166 (198)
T ss_dssp             EETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCcccccccccccccc
Confidence            999999999998 6777666543  258999999999999652            2667777776532            


Q ss_pred             ----CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          150 ----GASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       150 ----~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                          ...+++++||++|.|++++|+++++.
T Consensus       167 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          167 ELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             TCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             cccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence                22379999999999999999999764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=3.3e-30  Score=186.11  Aligned_cols=165  Identities=12%  Similarity=0.114  Sum_probs=127.6

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      |...+||+++|.+++| ||||+++|.++.+. .+.||.+.. ...+..+  .+.+.+|||||++.+..++..+++++|++
T Consensus         4 ~~~~~~i~v~G~~~~G-Kssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   78 (171)
T 1upt_A            4 MTREMRILILGLDGAG-KTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAV   78 (171)
T ss_dssp             CSSCEEEEEECSTTSS-HHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred             CCCccEEEEECCCCCC-HHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence            5667899999999999 99999999988864 466777643 3345555  47889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      ++|||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+....       ..+.......++...++ +++++|
T Consensus        79 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~S  149 (171)
T 1upt_A           79 IYVVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMTS-------SEMANSLGLPALKDRKW-QIFKTS  149 (171)
T ss_dssp             EEEEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHHTGGGCTTSCE-EEEECC
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH-------HHHHHHhCchhccCCce-EEEECc
Confidence            999999999999988 55655554332  58999999999999765321       00011111122233455 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028595          159 SKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~~  179 (207)
                      |++|.|++++|+++++.+.++
T Consensus       150 a~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          150 ATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             TTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHHHHHhhc
Confidence            999999999999999988654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.4e-30  Score=188.13  Aligned_cols=160  Identities=13%  Similarity=0.131  Sum_probs=125.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.+++| ||||+++|+++.+. .+.||.+.. ...+.+++  +.+.+|||||++.+..++..+++++|++++
T Consensus        15 ~~~~i~v~G~~~~G-Kssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           15 QEHKVIIVGLDNAG-KTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             SCEEEEEEESTTSS-HHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CccEEEEECCCCCC-HHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            36799999999999 99999999988876 677887733 34555565  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-----HhCCcEEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYI  155 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~  155 (207)
                      |||+++++++..+ ..|+..+...  ..+.|+++|+||+|+.+..            ..++..+...     ..++ +++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~  155 (187)
T 1zj6_A           90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQW-HIQ  155 (187)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCCSSCE-EEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhhcCCCc-EEE
Confidence            9999999999999 6777776554  2689999999999997532            3344444332     2344 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ++||++|.|++++|+++++.+.....
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          156 ACCALTGEGLCQGLEWMMSRLKIRLE  181 (187)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred             EccCCCCcCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999876654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=1.7e-29  Score=185.20  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=128.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.+++| ||||+++++++. ...+.||.+.. ...+.+++  +.+.+|||||++.+...+..+++++|++++
T Consensus        17 ~~~~i~v~G~~~~G-Kssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           17 RELRLLMLGLDNAG-KTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             CCEEEEEECSTTSS-HHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CeeEEEEECCCCCC-HHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            46799999999999 999999999988 77788888743 33455554  788999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-----HhCCcEEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYI  155 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~  155 (207)
                      |||+++++++..+ ..|+..+...  .++.|+++|+||+|+.+..            ..++..+...     ..++ +++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  157 (186)
T 1ksh_A           92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHW-RIQ  157 (186)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence            9999999999998 5666665443  2689999999999997653            3333333222     2344 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++||++|.|++++|+++++.+.++
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          158 GCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999988765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=186.42  Aligned_cols=158  Identities=13%  Similarity=0.161  Sum_probs=128.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC-CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS-SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||+++|+++. +...+.+|.+. ....+.+++  +.+.+|||||++.+..++..+++++|+++
T Consensus        20 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           20 KEVHVLCLGLDNSG-KTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             -CEEEEEEECTTSS-HHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CccEEEEECCCCCC-HHHHHHHHhcCCCCCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            36799999999999 999999999887 56677788763 344555555  78899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH--H---hCCc
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK--Q---IGAS  152 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~--~---~~~~  152 (207)
                      +|||+++++++..+ ..|+..+....    ++.|+++|+||+|+.+..            ..+++.+++.  .   .++ 
T Consensus        96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-  161 (190)
T 2h57_A           96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDAV------------TSVKVSQLLCLENIKDKPW-  161 (190)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC------------CHHHHHHHHTGGGCCSSCE-
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccCC------------CHHHHHHHhChhhccCCce-
Confidence            99999999999998 56666665432    479999999999996542            4555665553  1   234 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +++++||++|.|++++|+++.+.+.+
T Consensus       162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          162 HICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            89999999999999999999987643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.1e-29  Score=187.16  Aligned_cols=154  Identities=15%  Similarity=0.160  Sum_probs=126.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|.+++| ||||++++.++.+. .+.||.+.. ...+.+++  +.+.+|||||++.++.++..+++++|++++|
T Consensus        23 ~~ki~~vG~~~vG-KSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   97 (190)
T 1m2o_B           23 HGKLLFLGLDNAG-KTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   97 (190)
T ss_dssp             -CEEEEEESTTSS-HHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred             ccEEEEECCCCCC-HHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            5699999999999 99999999988864 567777664 44666676  7899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-----------C
Q 028595           84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-----------G  150 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------~  150 (207)
                      ||++++++++.+ ..|+..+...  .++.|+++|+||+|+.+.            +..+++.+++...           .
T Consensus        98 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  164 (190)
T 1m2o_B           98 VDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQR  164 (190)
T ss_dssp             EETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSSC
T ss_pred             EECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCccccccccccccc
Confidence            999999999998 6777666543  258999999999999752            2556666655432           2


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      ..+++++||++|.|++++|+++++.
T Consensus       165 ~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          165 PVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             eEEEEEeECCcCCCHHHHHHHHHhh
Confidence            2379999999999999999999754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=3.3e-31  Score=190.23  Aligned_cols=155  Identities=11%  Similarity=0.127  Sum_probs=120.8

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.+++| ||||+++|+++.+. .+.||.+.. ...+..  ..+.+.+|||||++.++.++..+++++|++++||
T Consensus         1 ~ki~~~G~~~~G-Kssl~~~l~~~~~~-~~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAG-KTTILYKLKLGEIV-TTIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSS-HHHHHHHHHHHCSS-CCCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCC-HHHHHHHHHcCCcC-cccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            489999999999 99999999988875 457777632 223333  3478999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhCCcEEEEe
Q 028595           85 SLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYIEC  157 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~e~  157 (207)
                      |+++++++..+ ..|+..+...  .++.|+++|+||+|+.+..            ..++...     +++..++ +++++
T Consensus        76 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~  141 (164)
T 1r8s_A           76 DSNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQAT  141 (164)
T ss_dssp             ETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEEC
T ss_pred             ECCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCccE-EEEEc
Confidence            99999999998 5676666443  2589999999999996542            2222211     1112233 79999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ||++|.|++++|+++++.+.+
T Consensus       142 Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          142 CATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             BTTTTBTHHHHHHHHHHHC--
T ss_pred             ccCCCcCHHHHHHHHHHHHhh
Confidence            999999999999999988753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=3.7e-29  Score=185.57  Aligned_cols=164  Identities=26%  Similarity=0.437  Sum_probs=143.1

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.+++| ||||+++|++..+...+.||++..+ ...+.++|..+.+.+||++|++.++.++..++++++++
T Consensus         3 ~~~~kv~lvG~~g~G-KSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVG-KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             SEEEEEEEESSTTSS-HHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             cceEEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            357899999999999 9999999999988888889987666 55788899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||+++..++.++ ..|+..+.... .+.|+++++||+|+.+.+.+          ..++++.++...++ .++++||
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~----------~~~~a~~l~~~~~~-~~~d~Sa  149 (199)
T 2f9l_A           82 LLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAV----------PTDEARAFAEKNNL-SFIETSA  149 (199)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccCc----------CHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999988 67887776544 57899999999999776553          77889999999998 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      +++.|++++|+.+.+.+..
T Consensus       150 l~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          150 LDSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=3.7e-31  Score=194.05  Aligned_cols=168  Identities=18%  Similarity=0.256  Sum_probs=125.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCC--CCCccccCceeeeeee-EEEE---CCeEEEEEEEeCCCCccccccccceecCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR--SSIWDYIPTVFDNFSA-NVVA---EGTTVNLGLWDTAGQEDYNRLRPLSYRGA   77 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~~~~~t~~~~~~~-~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~   77 (207)
                      .+||+++|.++|| ||||+++|++.  .+...+.+|++..+.. .+.+   ++..+.+.+|||+|++.+..++..+++++
T Consensus         2 ~~kv~ivG~~gvG-KStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   80 (184)
T 2zej_A            2 RMKLMIVGNTGSG-KTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR   80 (184)
T ss_dssp             -CEEEEESCTTSS-HHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC
Confidence            4799999999999 99999999985  4556678888766533 3333   34578899999999999999999999999


Q ss_pred             cEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc---E
Q 028595           78 DVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS---Y  153 (207)
Q Consensus        78 d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~  153 (207)
                      +++++|||++++ .++..+ ..|+..+....++.|+++||||+|+.+.+.+       ..+..+.++.+++.+++.   +
T Consensus        81 ~~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  152 (184)
T 2zej_A           81 ALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQR-------KACMSKITKELLNKRGFPAIRD  152 (184)
T ss_dssp             EEEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHHH-------HHHHHHHHHHTTTCTTSCEEEE
T ss_pred             cEEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchhh-------HHHHHHHHHHHHHhcCCcchhh
Confidence            999999999997 578887 7898888776678999999999999765431       000134566777777873   3


Q ss_pred             EEEeccCCCC-CHHHHHHHHHHHHhCCC
Q 028595          154 YIECSSKTQQ-NVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       154 ~~e~Sa~~~~-~i~~~f~~i~~~~~~~~  180 (207)
                      ++++||+++. +++++++.+.+.+...+
T Consensus       153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          153 YHFVNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             EEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             eEEEecccCchhHHHHHHHHHHHHhccc
Confidence            9999999996 99999999999887654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=5.6e-30  Score=189.55  Aligned_cols=165  Identities=13%  Similarity=0.167  Sum_probs=125.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee---EEEE-CCeEEEEEEEeCCCCccccccc---cceec
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA---NVVA-EGTTVNLGLWDTAGQEDYNRLR---PLSYR   75 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~---~~~~-~~~~~~l~i~D~~G~~~~~~~~---~~~~~   75 (207)
                      ..+||+++|.++|| ||||++++.+.. ...  +|.+..+..   ...+ ++..+.+.+|||+|++.|..+.   ..+++
T Consensus        19 ~~~ki~~vG~~~vG-KTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   94 (196)
T 3llu_A           19 SKPRILLMGLRRSG-KSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR   94 (196)
T ss_dssp             -CCEEEEEESTTSS-HHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred             cceEEEEECCCCCC-HHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence            46899999999999 999999877653 322  444433322   2233 3667899999999999988776   89999


Q ss_pred             CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH----Hh
Q 028595           76 GADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK----QI  149 (207)
Q Consensus        76 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~  149 (207)
                      ++|++|+|||++++  +++..+ ..|+..+....+++|+++||||+|+.+.....   ...+.+..++++.+++    .+
T Consensus        95 ~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           95 GTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---ETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             TCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---HHHHHHHHHHHHHHHHTTCTTS
T ss_pred             cCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---HHHhHHHHHHHHHHHHhhhhcC
Confidence            99999999999997  677776 57777765556799999999999986532100   0011246677888888    66


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      ++ +|+++||++ .|++++|..+++.++
T Consensus       171 ~~-~~~e~Sa~~-~~v~~~f~~l~~~li  196 (196)
T 3llu_A          171 HL-SFYLTSIYD-HSIFEAFSKVVQKLI  196 (196)
T ss_dssp             CE-EEEEECTTS-THHHHHHHHHHHHTC
T ss_pred             Cc-ceEEEEech-hhHHHHHHHHHHHhC
Confidence            76 899999999 999999999998763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=7.6e-30  Score=186.64  Aligned_cols=157  Identities=18%  Similarity=0.204  Sum_probs=123.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.+++| ||||+++|.++.+ ..+.||.+.. ...+..++  +.+.+|||||++.++.++..+++++|++++
T Consensus        15 ~~~ki~ivG~~~vG-KSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           15 QEVRILLLGLDNAG-KTTLLKQLASEDI-SHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SCEEEEEEESTTSS-HHHHHHHHCCSCC-EEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CceEEEEECCCCCC-HHHHHHHHhcCCC-CcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999 9999999998864 4566777733 33455554  788999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH-----HHhCCcEEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYI  155 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~  155 (207)
                      |||+++++++..+ ..|+..+... . ++.|+++|+||+|+.+..            ..++..+..     ...++ +++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  155 (181)
T 1fzq_A           90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRVW-QIQ  155 (181)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCce-EEE
Confidence            9999999999998 5666655332 2 589999999999997653            222222221     11233 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++||++|.|++++|+++++.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          156 SCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTC--
T ss_pred             EccCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=3.3e-30  Score=190.31  Aligned_cols=156  Identities=10%  Similarity=0.113  Sum_probs=118.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+. .+.||.+.. ...+..++  +.+.+|||||++.+..++..+++++|++++|
T Consensus        29 ~~ki~v~G~~~vG-KSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv  103 (192)
T 2b6h_A           29 QMRILMVGLDAAG-KTTILYKLKLGEIV-TTIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  103 (192)
T ss_dssp             CEEEEEEESTTSS-HHHHHHHHCSSCCE-EEEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred             ccEEEEECCCCCC-HHHHHHHHHhCCcc-ccCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            5799999999999 99999999988875 456776622 33444444  7899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhCCcEEEE
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYIE  156 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~e  156 (207)
                      ||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+..            ..++...     ++...++ ++++
T Consensus       104 ~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~  169 (192)
T 2b6h_A          104 VDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRTW-YVQA  169 (192)
T ss_dssp             EETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEE
T ss_pred             EECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EEEE
Confidence            999999999998 67766664432  589999999999996542            2222111     1112233 7999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhC
Q 028595          157 CSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +||++|.|++++|+++++.+.+
T Consensus       170 ~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          170 TCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             CBTTTTBTHHHHHHHHHHHTTT
T ss_pred             CcCCCcCCHHHHHHHHHHHHhc
Confidence            9999999999999999988753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=1.2e-29  Score=185.46  Aligned_cols=154  Identities=14%  Similarity=0.134  Sum_probs=124.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|+++.+ ..+.+|.+..+ ..+.+++  +.+.+|||||++.+..++..+++++|++++
T Consensus        20 ~~~~i~v~G~~~~G-KSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           20 QEHKVIIVGLDNAG-KTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             -CEEEEEEEETTSS-HHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             ceeEEEEECCCCCC-HHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            35799999999999 9999999999987 66778877443 4455565  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-----HhCCcEEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYI  155 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~  155 (207)
                      |||+++++++..+ ..|+..+...  ..+.|+++|+||+|+.+..            ..++..+...     ..++ +++
T Consensus        95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~  160 (181)
T 2h17_A           95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQW-HIQ  160 (181)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccCC------------CHHHHHHHhCcccccCCce-EEE
Confidence            9999999999998 5666655443  2689999999999996542            3333333322     2334 899


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028595          156 ECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      ++||++|.|++++|++|++.
T Consensus       161 ~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          161 ACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             ECBTTTTBTHHHHHHHHHTC
T ss_pred             EccCCCCcCHHHHHHHHHhh
Confidence            99999999999999999754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.96  E-value=4.1e-30  Score=189.02  Aligned_cols=158  Identities=20%  Similarity=0.219  Sum_probs=125.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|+++.+...+.||++..+.. +..+  .+.+.+|||||++.+..++..+++++|++|+|
T Consensus        22 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   97 (188)
T 1zd9_A           22 EMELTLVGLQYSG-KTTFVNVIASGQFNEDMIPTVGFNMRK-ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   97 (188)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCCSCCCCCSEEEEE-EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             ccEEEEECCCCCC-HHHHHHHHHcCCCCCccCCCCceeEEE-EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence            5799999999999 999999999999888888998876643 3333  57889999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH-----HHhCCcEEEE
Q 028595           84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIE  156 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e  156 (207)
                      ||+++++++..+ ..|+..+...  ..+.|+++|+||+|+.+..            ..++.....     ...+. ++++
T Consensus        98 ~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~  163 (188)
T 1zd9_A           98 VDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDREI-CCYS  163 (188)
T ss_dssp             EETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEEE
T ss_pred             EECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCCe-eEEE
Confidence            999999999998 5666655433  2689999999999997542            222211111     11233 7899


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028595          157 CSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +||++|.|++++|+++++.+...
T Consensus       164 ~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          164 ISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             CCTTTCTTHHHHHHHHHHTCC--
T ss_pred             EECCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999877543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=1e-29  Score=186.83  Aligned_cols=158  Identities=15%  Similarity=0.116  Sum_probs=124.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.+++| ||||+++|.++.+. .+.||.+.. ...+..++  +.+.+|||||++.+..++..+++++|++++
T Consensus        21 ~~~~i~v~G~~~~G-Kssli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           21 RKIRVLMLGLDNAG-KTSILYRLHLGDVV-TTVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             SCEEEEEEEETTSS-HHHHHHHTCCSCCE-EECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CceEEEEECCCCCC-HHHHHHHHHcCCCC-CcCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            46899999999999 99999999988865 466777632 33455554  788999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhCCcEEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYI  155 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~  155 (207)
                      |||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+...            .++...     .+...++ +++
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~  161 (189)
T 2x77_A           96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAAS------------EAEIAEQLGVSSIMNRTW-TIV  161 (189)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC------------HHHHHHHhChhhccCCce-EEE
Confidence            9999999999998 56655554332  5899999999999976532            122221     2222344 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++||+++.|++++|+++.+.+.+.
T Consensus       162 ~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          162 KSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             EccCCCccCHHHHHHHHHHHHHhc
Confidence            999999999999999999988643

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=1.4e-28  Score=181.47  Aligned_cols=161  Identities=26%  Similarity=0.436  Sum_probs=143.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.+++| ||||++++++..+...+.||++.++ ...+.++|..+.+.+||++|++++..++..+++++++++
T Consensus        28 ~~~kv~lvG~~g~G-KSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           28 YLFKVVLIGDSGVG-KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             EEEEEEEEECTTSS-HHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             cceEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            45899999999999 9999999999988888889998777 558889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||+++..+++.+ ..|+..+.... .+.|+++++||.|+.+....          ..++++.++...++ .++++||+
T Consensus       107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~----------~~~~a~~l~~~~~~-~~ld~Sal  174 (191)
T 1oix_A          107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAV----------PTDEARAFAEKNGL-SFIETSAL  174 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999887 67877776543 57899999999999765543          77889999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028595          161 TQQNVKAVFDAAIKVV  176 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~  176 (207)
                      ++.+++++|+.+.+.+
T Consensus       175 d~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          175 DSTNVEAAFQTILTEI  190 (191)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998865

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=9.6e-29  Score=180.48  Aligned_cols=157  Identities=11%  Similarity=0.082  Sum_probs=123.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.+++| ||||+++++++.+ ..+.||.+.. ...+.+++  +.+.+|||||++.+...+..+++++|++++
T Consensus        17 ~~~~i~v~G~~~~G-Kssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           17 KELRILILGLDGAG-KTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SCEEEEEEEETTSS-HHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CccEEEEECCCCCC-HHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            46799999999999 9999999998887 6677887733 34455555  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH-----hCCcEEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----IGASYYI  155 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~  155 (207)
                      |||++++++++.+ ..|+..+...  .++.|+++|+||+|+.+..            ..++..+....     .++ +++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~  157 (183)
T 1moz_A           92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGAL------------SASEVSKELNLVELKDRSW-SIV  157 (183)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTCC------------CHHHHHHHTTTTTCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EEE
Confidence            9999999999998 6676666554  2689999999999996542            33343333322     123 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++||++|.|++++|+++.+.+.+
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          158 ASSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             EEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             EccCCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999999988753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=2.3e-30  Score=203.37  Aligned_cols=169  Identities=12%  Similarity=0.079  Sum_probs=127.7

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCc---cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc---cccceecCCcE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIW---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---LRPLSYRGADV   79 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~~~~~~~~~d~   79 (207)
                      ||+++|..+|| ||||++++.++-...   .+.||++..+..   ++ ..+.++||||+||++|+.   .+..|++++++
T Consensus         1 KIvllGdsgvG-KTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCG-KSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSS-TTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCC-HHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            79999999999 999999887664332   356888776643   23 358899999999999974   36899999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH----hCCcE
Q 028595           80 FVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASY  153 (207)
Q Consensus        80 ~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~  153 (207)
                      +|+|||++++  ++...+ ..|+..+....+++|++++|||+|+......   ....+.+..++++++++.    +++ +
T Consensus        76 ~IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R---~~~~R~V~~~~~~~la~~~~~~~~i-~  150 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFK---VDAQRDIMQRTGEELLELGLDGVQV-S  150 (331)
T ss_dssp             EEEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHH---HHHHHHHHHHHHHTTSSSSCSCCCE-E
T ss_pred             EEEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhh---hhHHHHhhHHHHHHHHhhcccccCc-e
Confidence            9999999998  333333 3445555555689999999999999764210   000112477788888886    566 9


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCCcchhh
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKPPQKQKE  185 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~  185 (207)
                      |++|||++ .+|.++|..+++.+++..+..+.
T Consensus       151 f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~  181 (331)
T 3r7w_B          151 FYLTSIFD-HSIYEAFSRIVQKLIPELSFLEN  181 (331)
T ss_dssp             EECCCSSS-SHHHHHHHHHHTTSSTTHHHHHH
T ss_pred             EEEeccCC-CcHHHHHHHHHHHHHhhHHHHHH
Confidence            99999998 69999999999999876554433

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.6e-29  Score=192.65  Aligned_cols=160  Identities=14%  Similarity=0.172  Sum_probs=125.8

Q ss_pred             cceeEEEEecc---------cccceeeeeeeccC---CCCCccccCce-eeeee-eEE--------------EECCeEEE
Q 028595            3 LLAKLACLFAT---------QVTSFLLYVLSVSG---RSSIWDYIPTV-FDNFS-ANV--------------VAEGTTVN   54 (207)
Q Consensus         3 ~~~ki~iiG~~---------~~GgKssli~~l~~---~~~~~~~~~t~-~~~~~-~~~--------------~~~~~~~~   54 (207)
                      ..+||+++|.+         +|| ||||+++|++   +.+...+.||+ +..+. ..+              .+++..+.
T Consensus        18 ~~~ki~lvG~~~~~~~~~~~~vG-KSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           18 GTYNISVVGLSGTEKEKGQCGIG-KSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             SCEEEEEEESCCCTTTTTTCCCS-HHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             ceeEEEEECCCccccccCCCCcC-HHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            35899999999         999 9999999999   56667777776 44432 222              25678899


Q ss_pred             EEEEe-----------------------CCCCccccccccceec---------------------CCcEEEEEEeCCCh-
Q 028595           55 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFVLAFSLVSR-   89 (207)
Q Consensus        55 l~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~-   89 (207)
                      +.|||                       ++|++++..++..++.                     ++|++|+|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       7788888889998888                     79999999999998 


Q ss_pred             -hhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-CCcEEEEeccCCCCCH
Q 028595           90 -ASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNV  165 (207)
Q Consensus        90 -~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i  165 (207)
                       ++++.+ ..|+..+...  .+++|+++|+||+|+.+.+.            .++++++++.. ++ +++++||++|.|+
T Consensus       177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~------------v~~~~~~~~~~~~~-~~~e~SAk~g~gv  242 (255)
T 3c5h_A          177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY------------IRDAHTFALSKKNL-QVVETSARSNVNV  242 (255)
T ss_dssp             --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH------------HHHHHHHHHTSSSC-CEEECBTTTTBSH
T ss_pred             hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH------------HHHHHHHHHhcCCC-eEEEEECCCCCCH
Confidence             999998 7888887654  26899999999999965442            36788888774 66 8999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028595          166 KAVFDAAIKVVI  177 (207)
Q Consensus       166 ~~~f~~i~~~~~  177 (207)
                      +++|+++++.+.
T Consensus       243 ~elf~~l~~~l~  254 (255)
T 3c5h_A          243 DLAFSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=1.3e-28  Score=184.33  Aligned_cols=162  Identities=13%  Similarity=0.036  Sum_probs=117.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCe-EEEEEEEeCCCCccccc-cccceecCCcEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNR-LRPLSYRGADVF   80 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~   80 (207)
                      ...||+++|.+++| ||||+++|+++.+...+.++....+.  +.+++. .+.+.+|||||++.+.. ++..|++++|++
T Consensus         6 ~~~ki~vvG~~~~G-KTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            6 SQRAVLFVGLCDSG-KTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             --CEEEEECSTTSS-HHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCEEEEECCCCCC-HHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            36899999999999 99999999999888777655433222  555644 68899999999999987 888899999999


Q ss_pred             EEEEeCCChh-hHHHHHHHHHHHHhhc---CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH------------
Q 028595           81 VLAFSLVSRA-SYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE------------  144 (207)
Q Consensus        81 i~v~d~~~~~-s~~~~~~~~~~~i~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~------------  144 (207)
                      ++|||+++.+ ++......|...+...   .+++|+++|+||+|+.+....        ....+....            
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~~~l~~~l~~~~~~~~~~  154 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA--------KLIQQQLEKELNTLRVTRSAA  154 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH--------HHHHHHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH--------HHHHHHHHHHHHHHhccchhc
Confidence            9999999964 4666645566555442   257999999999999765421        001111111            


Q ss_pred             --------------------HHHHhC--CcEEEEeccCCC------CCHHHHHHHHHHH
Q 028595          145 --------------------LRKQIG--ASYYIECSSKTQ------QNVKAVFDAAIKV  175 (207)
Q Consensus       145 --------------------~~~~~~--~~~~~e~Sa~~~------~~i~~~f~~i~~~  175 (207)
                                          |+.+..  ..+|++|||++|      .||+++|++|.+.
T Consensus       155 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          155 PSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                111110  348999999999      9999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=2.3e-27  Score=172.34  Aligned_cols=158  Identities=12%  Similarity=0.141  Sum_probs=120.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ...||+++|.+++| ||||+++|+++.+...+.++.+..+ ...+.+++.  .+.+|||||++.+..++..++..+|+++
T Consensus         7 ~~~~i~v~G~~~~G-Kssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            7 RPPVVTIMGHVDHG-KTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCEEEEESCTTTT-HHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCEEEEECCCCCC-HHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            46799999999999 9999999999998877777766555 446677774  4679999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC--------cE
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA--------SY  153 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~  153 (207)
                      +|||+++.......  .++..+..  .++|+++|+||+|+.+..             .++.....+..+.        .+
T Consensus        84 ~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  146 (178)
T 2lkc_A           84 LVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDTI  146 (178)
T ss_dssp             EEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSEE
T ss_pred             EEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCccc
Confidence            99999984333322  12223322  379999999999997532             2222222222221        38


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++++||++|.|++++|+++++.+...+
T Consensus       147 ~~~~Sa~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          147 FCKLSAKTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             EEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence            999999999999999999998876543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=1e-27  Score=189.19  Aligned_cols=166  Identities=16%  Similarity=0.191  Sum_probs=132.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc-----cccccceec
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPLSYR   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~~   75 (207)
                      .+||+++|.+++| ||||+++|+++.  +. ..+.+|++..+. .+.+++ .+.+.+|||||++.+     ..++..+++
T Consensus         3 ~~KI~lvG~~~vG-KSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            3 GSKLLLMGRSGSG-KSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            5799999999999 999999998873  22 256677766554 333444 688999999999998     788899999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHH---HHhhcCCCCcEEEEeeCCCccc--CcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIP---ELQHYSPGVPVVLVGTKLDLRE--DKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~---~i~~~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      ++|++|+|||++++++++++ ..|..   .+....+++|+++|+||+|+.+  .+..      ...+..++++++++.+|
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~------~~~v~~~~~~~~~~~~g  152 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREE------LFQIMMKNLSETSSEFG  152 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH------HHHHHHHHHHHHHHTTT
T ss_pred             cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhH------HHHHHHHHHHHHHHHcC
Confidence            99999999999999999988 56644   4444457899999999999976  3320      00025688999999998


Q ss_pred             C--cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          151 A--SYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       151 ~--~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      .  .+++++||++ .++.++|..+++.+....
T Consensus       153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~~  183 (307)
T 3r7w_A          153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIPNM  183 (307)
T ss_dssp             CCSCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred             CCCeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence            3  4999999999 899999999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=7.1e-28  Score=191.68  Aligned_cols=158  Identities=11%  Similarity=0.122  Sum_probs=117.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|.++.+...+ ||.+..+. .+..+  .+.+.||||||++.+..++..+++++|++|+|
T Consensus       165 ~~kI~ivG~~~vG-KSsLl~~l~~~~~~~~~-pT~~~~~~-~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          165 EMRILMVGLDAAG-KTTILYKLKLGEIVTTI-PTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             SEEEEEEESTTSS-HHHHHHHTCSSCCEEEE-EETTEEEE-EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             cceEEEECCCCcc-HHHHHHHHhCCCCCCcc-cccceEEE-EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            4699999999999 99999999998875543 66654432 23333  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH-----HHhCCcEEEEe
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIEC  157 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~  157 (207)
                      ||+++++++..+...|...+.... +++|+++|+||+|+.+...            .++.....     ...++ +++++
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~~~i~~~~~~~~~~~~~~-~~~~v  306 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRHRNW-YIQAT  306 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHHTCTTCCSSCE-EEEEC
T ss_pred             EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC------------HHHHHHHhchhhhhcCCC-EEEEE
Confidence            999999999998444444444433 5899999999999976542            22222111     11233 79999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ||++|.||+++|++|++.+.++
T Consensus       307 SAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          307 CATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             BTTTTBTHHHHHHHHHHHHTC-
T ss_pred             ECCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999988654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.94  E-value=2.5e-27  Score=170.68  Aligned_cols=152  Identities=14%  Similarity=0.094  Sum_probs=115.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccc------cccceec-
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSYR-   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~-   75 (207)
                      ..||+++|.+++| ||||+++|++..+...+.|+.+... ...+..++  ..+.+|||||++.+..      +...|+. 
T Consensus         3 ~~~v~lvG~~gvG-KStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            3 SYEIALIGNPNVG-KSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCC-HHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            4799999999999 9999999998876555555544333 44555665  5789999999988753      3356665 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           76 -GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        76 -~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                       ++|++++|+|+++.+..    ..|+..+.+  .+.|+++|+||+|+...+.+          . .+++.+++.+++ ++
T Consensus        80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~----------~-~~~~~~~~~~~~-~~  141 (165)
T 2wji_A           80 EKPDLVVNIVDATALERN----LYLTLQLME--MGANLLLALNKMDLAKSLGI----------E-IDVDKLEKILGV-KV  141 (165)
T ss_dssp             HCCSEEEEEEETTCHHHH----HHHHHHHHH--TTCCEEEEEECHHHHHHTTC----------C-CCHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchhHh----HHHHHHHHh--cCCCEEEEEEchHhccccCh----------h-hHHHHHHHHhCC-CE
Confidence             89999999999986543    345555544  37999999999998755432          2 246788888897 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 028595          155 IECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +++||++|.|++++|+++++.+
T Consensus       142 ~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          142 VPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.94  E-value=7.8e-27  Score=176.61  Aligned_cols=164  Identities=10%  Similarity=-0.019  Sum_probs=117.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCc------c----cccccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE------D----YNRLRP   71 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~------~----~~~~~~   71 (207)
                      ...||+++|.+++| ||||+++|+++.+.....+...... ...+..++  +.+.+|||||+.      .    +.. ..
T Consensus        28 ~~~kI~vvG~~~vG-KSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           28 HKKTIILSGAPNVG-KSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TSEEEEEECSTTSS-HHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCEEEEECCCCCC-HHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            36799999999999 9999999999876533222222112 22333343  678999999983      3    111 23


Q ss_pred             ceecCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH---HHHHHHHH
Q 028595           72 LSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT---AQGEELRK  147 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~---~~~~~~~~  147 (207)
                      .++..+|++|+|||++++.++... ...|+..+....++.|+++|+||+|+.+.+.+          ..   +.++.+++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~  173 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL----------SIDNKLLIKQILD  173 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC----------CHHHHHHHHHHHH
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh----------HHHHHHHHHHHHH
Confidence            446788999999999998876522 13566666665568999999999999766543          33   35677777


Q ss_pred             HhC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          148 QIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       148 ~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ..+  . +++++||++|.|++++|+++++.+...+.
T Consensus       174 ~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          174 NVKNPI-KFSSFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             HCCSCE-EEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCc-eEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence            776  5 89999999999999999999999875543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=7.8e-27  Score=196.81  Aligned_cols=162  Identities=16%  Similarity=0.160  Sum_probs=124.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEE---------EECCeEEEEEEEeCCCCcccccccccee
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANV---------VAEGTTVNLGLWDTAGQEDYNRLRPLSY   74 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~l~i~D~~G~~~~~~~~~~~~   74 (207)
                      .+||+++|.++|| ||||+++++++.+...+.||++..+....         ..++..+.+.+|||||++.+..++..++
T Consensus        41 ~~kV~lvG~~~vG-KSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l  119 (535)
T 3dpu_A           41 EIKVHLIGDGMAG-KTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM  119 (535)
T ss_dssp             EEEEEEESSSCSS-HHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence            5799999999999 99999999999988888899987764321         1233468899999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      +++|++|+|||+++.+.   + ..|+..+....++.|+++|+||+|+.+.+.+          ..+++++++...+. ++
T Consensus       120 ~~~d~ii~V~D~s~~~~---~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~  184 (535)
T 3dpu_A          120 TRSSVYMLLLDSRTDSN---K-HYWLRHIEKYGGKSPVIVVMNKIDENPSYNI----------EQKKINERFPAIEN-RF  184 (535)
T ss_dssp             HSSEEEEEEECGGGGGG---H-HHHHHHHHHHSSSCCEEEEECCTTTCTTCCC----------CHHHHHHHCGGGTT-CE
T ss_pred             cCCcEEEEEEeCCCchh---H-HHHHHHHHHhCCCCCEEEEEECCCccccccc----------CHHHHHHHHHhcCC-ce
Confidence            99999999999987643   3 5778888877778999999999999876653          77888999999987 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +++||++|.|++++|+.+++.+.....
T Consensus       185 ~~vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          185 HRISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             EECCC-----CTTHHHHHHHHHTCTTS
T ss_pred             EEEecCcccCHHHHHHHHHHHHhcccc
Confidence            999999999999999999999877543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.93  E-value=6.7e-27  Score=171.53  Aligned_cols=158  Identities=16%  Similarity=0.185  Sum_probs=121.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCC-----------Cccccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLRPL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~   72 (207)
                      ++||+++|.+++| ||||+++|+++.+...+.|+.+.. ...+..+    .+.+|||||           ++.+..++..
T Consensus         1 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            1 MATIIFAGRSNVG-KSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             -CEEEEEEBTTSS-HHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            3699999999999 999999999998877776665422 2233333    588999999           6677777788


Q ss_pred             eecC-CcEEEEEEeCCChhhHHHHHHHHHHH---------HhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595           73 SYRG-ADVFVLAFSLVSRASYENVLKKWIPE---------LQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ  141 (207)
Q Consensus        73 ~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~---------i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~  141 (207)
                      ++++ ++++++||++.|..++..+...|...         +.... .++|+++|+||+|+.+..             .++
T Consensus        75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~  141 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEV  141 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHH
T ss_pred             HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHH
Confidence            8887 88888888888888887765556542         11111 489999999999986542             456


Q ss_pred             HHHHHHHhCCc------EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          142 GEELRKQIGAS------YYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       142 ~~~~~~~~~~~------~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++.+++.++..      +++++||++|.|++++|+++++.+.+.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            78888888872      3799999999999999999999887654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.93  E-value=1.2e-25  Score=165.77  Aligned_cols=157  Identities=18%  Similarity=0.168  Sum_probs=108.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCC----------Cccccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAG----------QEDYNRLRPL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G----------~~~~~~~~~~   72 (207)
                      ..+|+++|.+++| ||||+++|+++.+...+.++.+.+... ....++   .+.+|||||          ++.+..++..
T Consensus        23 ~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           23 LPEIALAGRSNVG-KSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCEEEEEEBTTSS-HHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            5799999999999 999999999998766667777655533 334444   589999999          6777777788


Q ss_pred             eecCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-HHHH
Q 028595           73 SYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRKQ  148 (207)
Q Consensus        73 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  148 (207)
                      +++.+   |++++|+|+++..++.+.  .+...+..  .+.|+++|+||+|+.+.+.+        ....+++++ ++..
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~~~~~~  166 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGKW--------DKHAKVVRQTLNID  166 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGGH--------HHHHHHHHHHHTCC
T ss_pred             HHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHHH--------HHHHHHHHHHHccc
Confidence            88777   999999999998777765  33344433  47999999999999766532        001123332 2222


Q ss_pred             hCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          149 IGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       149 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      .+. +++++||++|.|++++|+++.+.+.
T Consensus       167 ~~~-~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          167 PED-ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTS-EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCC-ceEEEEccCCCCHHHHHHHHHHHhc
Confidence            234 8999999999999999999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=7.4e-26  Score=165.88  Aligned_cols=156  Identities=14%  Similarity=0.082  Sum_probs=120.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc------ccccceec-
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSYR-   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~-   75 (207)
                      ..||+++|.+++| ||||+++|++..+...+.|+.+... ...+..++  +.+.+|||||++.+.      .++..++. 
T Consensus         7 ~~~i~lvG~~gvG-KStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            7 SYEIALIGNPNVG-KSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            4799999999999 9999999998775555555554333 44566665  678999999998875      34556664 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           76 -GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        76 -~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                       .+|++++|+|.++.+   .. ..|+..+..  .+.|+++|+||+|+...+.+          . .+++.+++.+++ ++
T Consensus        84 ~~~~~~i~v~d~~~~~---~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~~----------~-~~~~~~~~~~~~-~~  145 (188)
T 2wjg_A           84 EKPDLVVNIVDATALE---RN-LYLTLQLME--MGANLLLALNKMDLAKSLGI----------E-IDVDKLEKILGV-KV  145 (188)
T ss_dssp             HCCSEEEEEEEGGGHH---HH-HHHHHHHHT--TTCCEEEEEECHHHHHHTTC----------C-CCHHHHHHHHTS-CE
T ss_pred             cCCCEEEEEecchhHH---HH-HHHHHHHHh--cCCCEEEEEEhhhccccccc----------h-HHHHHHHHHhCC-Ce
Confidence             599999999988643   34 456666654  47999999999998765442          2 356788888897 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +++||+++.|++++|+++++.+....
T Consensus       146 ~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          146 VPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999887654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=2.8e-26  Score=166.35  Aligned_cols=152  Identities=16%  Similarity=0.143  Sum_probs=112.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc--------cce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   73 (207)
                      ..||+++|.+++| ||||+++|++...  ...+.++..+.+...+.+++.  .+.+|||||++.+....        ..+
T Consensus         4 ~~ki~ivG~~g~G-KStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            4 GMKVVIAGRPNAG-KSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             CEEEEEEESTTSS-HHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4699999999999 9999999998764  233434443444567777874  47899999987643211        135


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  152 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  152 (207)
                      ++++|++++|||++++.+++.  ..|+..+.... .++|+++|+||+|+.+....                 +++..+. 
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-----------------~~~~~~~-  140 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETLG-----------------MSEVNGH-  140 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----------------EEEETTE-
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchhh-----------------hhhccCC-
Confidence            789999999999999988764  36766665544 47999999999998543211                 1112344 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +++++||++|.|++++|+++.+.+..
T Consensus       141 ~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          141 ALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            89999999999999999999987643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.92  E-value=6.3e-26  Score=162.00  Aligned_cols=151  Identities=19%  Similarity=0.113  Sum_probs=108.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc-------ccccccee
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-------NRLRPLSY   74 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~   74 (207)
                      +.||+++|.+++| ||||++++.++.+.  ..+.++..+.+...+..++.  .+.+|||||++.+       ...+..++
T Consensus         1 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   77 (161)
T 2dyk_A            1 MHKVVIVGRPNVG-KSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRAL   77 (161)
T ss_dssp             CEEEEEECCTTSS-HHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHH
Confidence            3699999999999 99999999988743  23333333334556666664  6789999998873       33455678


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      +.+|++++|+|+++..+....  .+...+..  .+.|+++|+||+|+.+...              ++++++ .++..++
T Consensus        78 ~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~  138 (161)
T 2dyk_A           78 EDAEVVLFAVDGRAELTQADY--EVAEYLRR--KGKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDP  138 (161)
T ss_dssp             TTCSEEEEEEESSSCCCHHHH--HHHHHHHH--HTCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSC
T ss_pred             HhCCEEEEEEECCCcccHhHH--HHHHHHHh--cCCCEEEEEECcccccchH--------------hHHHHH-hCCCCCe
Confidence            899999999999986444332  23333333  3799999999999975432              223444 5676579


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 028595          155 IECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +++||++|.|++++|+++++.+
T Consensus       139 ~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          139 IPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHC
T ss_pred             EEEecccCCChHHHHHHHHHhC
Confidence            9999999999999999998865

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.92  E-value=4.6e-25  Score=169.82  Aligned_cols=153  Identities=17%  Similarity=0.128  Sum_probs=118.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccc------ccee--
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR------PLSY--   74 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~------~~~~--   74 (207)
                      ..||+++|.+++| ||||+|+|++..+.....|..+... ...+..++  +.+.+|||||+..+...+      ..|+  
T Consensus         5 ~~kI~lvG~~nvG-KTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            5 MVKVALAGCPNVG-KTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            5799999999999 9999999998876544444433322 22444444  688999999998876543      5565  


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      .++|++++|+|+++.++...    |...+...  ++|+++|+||+|+.+.+.+          . .++..+++.+|+ ++
T Consensus        82 ~~~d~ii~V~D~t~~~~~~~----~~~~l~~~--~~pvilv~NK~Dl~~~~~i----------~-~~~~~l~~~lg~-~v  143 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSLY----LLLEILEM--EKKVILAMTAIDEAKKTGM----------K-IDRYELQKHLGI-PV  143 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHHH----HHHHHHTT--TCCEEEEEECHHHHHHTTC----------C-BCHHHHHHHHCS-CE
T ss_pred             cCCCEEEEEeCCCchhhHHH----HHHHHHhc--CCCEEEEEECcCCCCccch----------H-HHHHHHHHHcCC-CE
Confidence            48999999999999776543    44444432  7999999999999765442          2 247888899998 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHh
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      +++||++|.|++++|+++.+.+.
T Consensus       144 i~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          144 VFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeeCCcCHHHHHHHHHHHhh
Confidence            99999999999999999999875

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.92  E-value=7e-25  Score=172.95  Aligned_cols=161  Identities=13%  Similarity=0.062  Sum_probs=124.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcc--ccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc----------cccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD--YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----------RLRP   71 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----------~~~~   71 (207)
                      ...|+++|.+++| ||||+|+|++.++...  ...|...........+ ....+.+|||||+....          ....
T Consensus        10 ~g~v~ivG~~nvG-KSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~   87 (308)
T 3iev_A           10 VGYVAIVGKPNVG-KSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK   87 (308)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCc-HHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence            4589999999999 9999999999886532  2222222222233333 14778999999986654          4556


Q ss_pred             ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-
Q 028595           72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-  150 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  150 (207)
                      .++.++|++++|+|+++..+..+. ..|+..+...  +.|+++|+||+|+......          ..+....+.+.++ 
T Consensus        88 ~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~----------~~~~~~~l~~~~~~  154 (308)
T 3iev_A           88 QSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAKN----------VLPLIDEIHKKHPE  154 (308)
T ss_dssp             HHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGGG----------GHHHHHHHHHHCTT
T ss_pred             HHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHHH----------HHHHHHHHHHhccC
Confidence            788899999999999999888887 6667777763  7999999999999743332          6677888888885 


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ..+++++||++|.|++++|+.+.+.+...
T Consensus       155 ~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          155 LTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             CCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence            44899999999999999999999998654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=2.3e-25  Score=163.86  Aligned_cols=158  Identities=15%  Similarity=0.103  Sum_probs=116.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEE-EECCeEEEEEEEeCCC----------Cccccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANV-VAEGTTVNLGLWDTAG----------QEDYNRLRPL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~i~D~~G----------~~~~~~~~~~   72 (207)
                      ..||+++|..++| ||||+++|+++. ...+.++.+.+..... ..+.   .+.+|||||          ++.+..++..
T Consensus        23 ~~~i~v~G~~~~G-KSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~   97 (195)
T 3pqc_A           23 KGEVAFVGRSNVG-KSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVED   97 (195)
T ss_dssp             TCEEEEEEBTTSS-HHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHH
Confidence            5799999999999 999999999887 3445566555443322 2232   467999999          6667777777


Q ss_pred             eecCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           73 SYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        73 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      +++.+   |++++|+|.++..+....  .+...+...  +.|+++|+||+|+.+....        ....+++++++...
T Consensus        98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~~~~~~  165 (195)
T 3pqc_A           98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSER--------AKKLEEHRKVFSKY  165 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGH--------HHHHHHHHHHHHSS
T ss_pred             HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHHH--------HHHHHHHHHHHhhc
Confidence            77766   999999999876444433  223333332  7999999999999754321        12456677777776


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +..+++++||++|.|++++|+++.+.+.+
T Consensus       166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          166 GEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            65599999999999999999999988753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=1.4e-25  Score=172.50  Aligned_cols=150  Identities=12%  Similarity=0.103  Sum_probs=116.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccc----------cccce
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR----------LRPLS   73 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~----------~~~~~   73 (207)
                      .+|+++|.+++| ||||+|+|++.+......|+++... ...+..++.  .+.+|||||...+..          +...|
T Consensus         2 ~kI~lvG~~n~G-KSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCG-KTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSS-HHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            589999999999 9999999999876544455555433 446666774  789999999987764          45566


Q ss_pred             e--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595           74 Y--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  151 (207)
Q Consensus        74 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  151 (207)
                      +  .++|++|+|+|+++.++...+    ...+...  +.|+++|+||+|+.+.+..           ......+++.+|+
T Consensus        79 ~~~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~~-----------~~~~~~l~~~lg~  141 (256)
T 3iby_A           79 VIDLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRGI-----------SIDTEKLESLLGC  141 (256)
T ss_dssp             HHHSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTTC-----------EECHHHHHHHHCS
T ss_pred             HhhCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCCc-----------HHHHHHHHHHcCC
Confidence            6  789999999999997766655    2233332  7999999999998765431           1235568888898


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHH
Q 028595          152 SYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       152 ~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                       +++++||++|.|++++|+++.+.
T Consensus       142 -~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          142 -SVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             -CEEECBGGGTBSHHHHHHHHHTC
T ss_pred             -CEEEEECCCCCCHHHHHHHHHhh
Confidence             99999999999999999999876

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.91  E-value=3.8e-25  Score=171.37  Aligned_cols=152  Identities=13%  Similarity=0.128  Sum_probs=116.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc------ccccceec-
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSYR-   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~-   75 (207)
                      ..||+++|.+++| ||||+|+|++........|.  .++ .....++. .+.+.+|||||++.+.      .+...|+. 
T Consensus         3 ~~kI~lvG~~nvG-KSTL~n~L~g~~~~v~~~pg--~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            3 MTEIALIGNPNSG-KTSLFNLITGHNQRVGNWPG--VTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             CEEEEEECCTTSS-HHHHHHHHHCCCCCCCSSSC--CCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHCCCCcccCCCC--CcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            5799999999999 99999999987643332332  222 23344455 5678999999998876      34566665 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           76 -GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        76 -~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                       ++|++++|+|+++.++..    .|...+.+  .++|+++|+||+|+.+.+..          . .++..+++.+++ ++
T Consensus        79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~----------~-~~~~~l~~~lg~-~v  140 (272)
T 3b1v_A           79 QRADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQGK----------K-INVDKLSYHLGV-PV  140 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHTTC----------C-CCHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcCCc----------H-HHHHHHHHHcCC-CE
Confidence             599999999999976654    34444443  38999999999998765432          2 356788888998 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHh
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      +++||++|.|++++|+++++.+.
T Consensus       141 i~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          141 VATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             EECBTTTTBSHHHHHHHHHHSCT
T ss_pred             EEEEccCCCCHHHHHHHHHHHHh
Confidence            99999999999999999988654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.90  E-value=3.9e-25  Score=171.74  Aligned_cols=156  Identities=13%  Similarity=0.084  Sum_probs=116.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc----------cc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL----------RP   71 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~----------~~   71 (207)
                      ...+|+++|.+++| ||||+|+|++..+.....|+++... ...+..++  ..+.+|||||+..+...          ..
T Consensus         2 ~~~~I~lvG~~n~G-KSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            2 KKLTIGLIGNPNSG-KTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCEEEEEEECTTSS-HHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CccEEEEECCCCCC-HHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence            35799999999999 9999999999876544445544333 44555555  45778999999887632          22


Q ss_pred             cee--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           72 LSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        72 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      .|+  .++|++++|+|.++.+....+ ..++...     ++|+++|+||+|+.+.+..           ......+++.+
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~~~-~~~l~~~-----~~p~ivv~NK~Dl~~~~~~-----------~~~~~~l~~~l  141 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNLYL-TLQLLEL-----GIPCIVALNMLDIAEKQNI-----------RIEIDALSARL  141 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHHHH-HHHHHHH-----TCCEEEEEECHHHHHHTTE-----------EECHHHHHHHH
T ss_pred             HHHhhcCCCEEEEEecCCChHHHHHH-HHHHHhc-----CCCEEEEEECccchhhhhH-----------HHHHHHHHHhc
Confidence            333  689999999999997766655 2332222     7999999999998765431           12356788888


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      |+ +++++||++|.|++++|+++.+.+...
T Consensus       142 g~-~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          142 GC-PVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             TS-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             CC-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            98 999999999999999999998876543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.90  E-value=4.9e-24  Score=160.32  Aligned_cols=165  Identities=9%  Similarity=-0.042  Sum_probs=111.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEEC-CeEEEEEEEeCCCC----------cccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQ----------EDYNRLRP   71 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~D~~G~----------~~~~~~~~   71 (207)
                      ..+|+++|..++| ||||+|+|+++.......++.+.+.. ....+. .....+.||||||.          +.+..+..
T Consensus        29 ~~~i~v~G~~~~G-KSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  107 (223)
T 4dhe_A           29 QPEIAFAGRSNAG-KSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS  107 (223)
T ss_dssp             SCEEEEEESCHHH-HHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCC-HHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence            5799999999999 99999999988732222233332222 223333 33467889999994          33445555


Q ss_pred             ceecC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           72 LSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        72 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                      .|+..   +|++++|+|.++..+...  ..|+..+..  .+.|+++|+||+|+.+....        ....+...+....
T Consensus       108 ~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~~l~~  175 (223)
T 4dhe_A          108 SYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQES--------INALRATQKSLDA  175 (223)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHHH--------HHHHHHHHHHHHH
T ss_pred             HHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEeccccCChhhH--------HHHHHHHHHHHHh
Confidence            66665   788999999998655443  356666655  37999999999999765431        0012223333333


Q ss_pred             h------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          149 I------GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       149 ~------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +      ...+++++||++|.|++++|++|.+.+..+..
T Consensus       176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence            2      34489999999999999999999998876543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.90  E-value=7.8e-24  Score=164.18  Aligned_cols=156  Identities=17%  Similarity=0.066  Sum_probs=119.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccc------ccccee--
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSY--   74 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~--   74 (207)
                      .+||+++|.+++| ||||+|+|++..+.....|+.+... ...+..++.  .+.+|||||+..+..      ....|+  
T Consensus         3 ~~~i~lvG~~g~G-KTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            3 LKTVALVGNPNVG-KTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CEEEEEEECSSSS-HHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCCC-HHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            4699999999999 9999999999877555556655444 345566664  489999999988766      455666  


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      .++|++++|+|.++.+...    .|...+... ...|+++|+||+|+.+.+..          .. +...+++.+++ ++
T Consensus        80 ~~~d~vi~v~D~~~~~~~~----~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~----------~~-~~~~l~~~lg~-~~  142 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMRNL----FLTLELFEM-EVKNIILVLNKFDLLKKKGA----------KI-DIKKMRKELGV-PV  142 (271)
T ss_dssp             TCCSEEEEEEEGGGHHHHH----HHHHHHHHT-TCCSEEEEEECHHHHHHHTC----------CC-CHHHHHHHHSS-CE
T ss_pred             cCCcEEEEEecCCcchhhH----HHHHHHHhc-CCCCEEEEEEChhcCccccc----------HH-HHHHHHHHcCC-cE
Confidence            6899999999999865332    233333332 23999999999998765432          22 27778888998 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++||++|.|++++|+.+.+.+...
T Consensus       143 ~~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          143 IPTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999987644

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.90  E-value=4.4e-24  Score=167.70  Aligned_cols=156  Identities=14%  Similarity=0.081  Sum_probs=112.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc-cccC-ceeeeeeeEEEECCeEEEEEEEeCCCCccc--------cccccce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDY--------NRLRPLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~   73 (207)
                      ..+|+++|.+++| ||||+|+|++.++.. ...| |+.......+..+  ..++.+|||||....        ......+
T Consensus         7 ~g~V~ivG~~nvG-KSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            7 SGFVAIVGKPNVG-KSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            4679999999999 999999999988643 2222 3222222222223  478899999998763        3445677


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH-hCCc
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-IGAS  152 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~  152 (207)
                      ++++|++++|+|++++.+..+  ..++..+....++.|+++|+||+|+.+...             . ..+.++. .+..
T Consensus        84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-------------~-~~~~~~~~~~~~  147 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-------------E-AMKAYHELLPEA  147 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-------------H-HHHHHHHTSTTS
T ss_pred             HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-------------H-HHHHHHHhcCcC
Confidence            899999999999998755543  344566665546799999999999865432             0 2222333 3545


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +++++||++|.|++++|+.+.+.+.+
T Consensus       148 ~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          148 EPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHhccc
Confidence            79999999999999999999987654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.89  E-value=4e-23  Score=171.11  Aligned_cols=155  Identities=12%  Similarity=0.055  Sum_probs=99.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc--------cce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   73 (207)
                      .+||+++|.+++| ||||+|+|++...  ...+..|..+.....+.+++  +.+.+|||||++.+...+        ..+
T Consensus       233 ~~kV~ivG~~nvG-KSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          233 GVSTVIAGKPNAG-KSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             CEEEEEECCTTSS-HHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            4689999999999 9999999998853  33444444444566777777  568999999987765443        447


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      +.++|++++|+|++++.+++.+ ..+...+... .+.|+++|+||+|+.+....             ..+.+.+. +..+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~-------------~~~~l~~~-~~~~  373 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANADA-------------LIRAIADG-TGTE  373 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTHH-------------HHHHHHHH-HTSC
T ss_pred             cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccch-------------hHHHHHhc-CCCc
Confidence            8899999999999998887533 2333333322 27999999999999765431             12344444 2248


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHh
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      ++++||++|.|++++|+++.+.+.
T Consensus       374 ~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          374 VIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999987

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.89  E-value=1.1e-23  Score=174.33  Aligned_cols=158  Identities=18%  Similarity=0.167  Sum_probs=118.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCC----------Ccccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAG----------QEDYNRLRP   71 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~   71 (207)
                      ..||+++|.+++| ||||+|+|++...  ...+..|..+.+...+..++.  .+.||||||          ++.|..+..
T Consensus       195 ~~ki~ivG~~~vG-KSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  271 (456)
T 4dcu_A          195 VIQFCLIGRPNVG-KSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  271 (456)
T ss_dssp             CEEEEEECSTTSS-HHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred             cceeEEecCCCCC-HHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHH
Confidence            5799999999999 9999999997652  334444444444566777775  688999999          666666554


Q ss_pred             -ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-
Q 028595           72 -LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-  149 (207)
Q Consensus        72 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-  149 (207)
                       .++..+|++++|+|+++..+...  ..|...+..  .+.|+++|+||+|+.+.+..          ..+++.+.++.. 
T Consensus       272 ~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~  337 (456)
T 4dcu_A          272 LKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKDES----------TMKEFEENIRDHF  337 (456)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCCSS----------HHHHHHHHHHHHC
T ss_pred             HHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCchH----------HHHHHHHHHHHhc
Confidence             37789999999999998655444  356666655  47999999999999876543          566666666654 


Q ss_pred             ---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          150 ---GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       150 ---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                         +..+++++||++|.|++++|+.+.+.+..
T Consensus       338 ~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          338 QFLDYAPILFMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence               33499999999999999999999988753

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.89  E-value=1.7e-23  Score=170.83  Aligned_cols=156  Identities=15%  Similarity=0.119  Sum_probs=115.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccccc-------ce
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP-------LS   73 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~   73 (207)
                      ...||+++|..++| ||||+++|++..+.  ..+..+..+.....+...+. ..+.+|||||++.+..+..       .+
T Consensus        33 ~~~kI~IvG~~~vG-KSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           33 FRRYIVVAGRRNVG-KSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCEEEEEECSCSTT-TTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCEEEEEECCCCCC-HHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            36799999999999 99999999988763  23333333444556666553 2789999999998876643       37


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      +.++|++|+|+|++..+..    ..|+..+.+.  ++|+++|+||+|+...+.            .+.++.+++.++. +
T Consensus       111 l~~aD~vllVvD~~~~~~~----~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~~~~~~l~~~~g~-~  171 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTPYE----DDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------EELKGLYESRYEA-K  171 (423)
T ss_dssp             HTSCSEEEEECSSSCCHHH----HHHHHHHHHT--TCCEEEECCCCTTTTCCC------------THHHHHSSCCTTC-C
T ss_pred             HhcCCEEEEEEeCCChHHH----HHHHHHHHhc--CCCEEEEEeCcCCCCccH------------HHHHHHHHHHcCC-C
Confidence            8899999999999433322    4566666654  899999999999977653            2667777778887 9


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++++||++|.|++++|+++.+.+...
T Consensus       172 v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          172 VLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999999998544

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=1.2e-24  Score=163.20  Aligned_cols=146  Identities=7%  Similarity=0.033  Sum_probs=105.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc---cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecC----
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG----   76 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~----   76 (207)
                      ..+|+++|.+++| ||||+++|.++.+..   .+.|+.+..+        ..+.+.+|||||++.++..+..+++.    
T Consensus        12 ~~~i~~~G~~g~G-KTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   82 (218)
T 1nrj_B           12 QPSIIIAGPQNSG-KTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF   82 (218)
T ss_dssp             CCEEEEECSTTSS-HHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence            5799999999999 999999999887644   3555555443        34578999999999999988888887    


Q ss_pred             CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh-----cCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           77 ADVFVLAFSLV-SRASYENVLKKWIPELQH-----YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        77 ~d~~i~v~d~~-~~~s~~~~~~~~~~~i~~-----~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      +|++|+|||++ +++++..+ ..|+..+..     ..+++|+++|+||+|+.+...+.    .......+++..++...+
T Consensus        83 ~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~l~~~~~~~~~~~~  157 (218)
T 1nrj_B           83 VKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPPS----KIKDALESEIQKVIERRK  157 (218)
T ss_dssp             EEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH----HHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH----HHHHHHHHHHHHHHHHHh
Confidence            89999999999 88898888 556555533     23589999999999997765320    000011456777877777


Q ss_pred             CcEEEEeccCCCCC
Q 028595          151 ASYYIECSSKTQQN  164 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~  164 (207)
                      . +++++||+++.+
T Consensus       158 ~-~~~~~Sa~~~~~  170 (218)
T 1nrj_B          158 K-SLNEVERKINEE  170 (218)
T ss_dssp             H-HHHC--------
T ss_pred             c-cccccccccccc
Confidence            6 889999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=7.4e-23  Score=168.69  Aligned_cols=178  Identities=18%  Similarity=0.124  Sum_probs=115.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc---------cccccce
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPLS   73 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~~   73 (207)
                      .+|+++|.++|| ||||+|+|++.+..  ..+..+..+.....+..++.  .+.+|||||.+..         ...+..+
T Consensus         2 ~~v~ivG~pnvG-KStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   78 (439)
T 1mky_A            2 ATVLIVGRPNVG-KSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNM   78 (439)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHH
Confidence            589999999999 99999999988742  33333333444556777775  4689999997752         3345678


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH-HHHHHHhCCc
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EELRKQIGAS  152 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~  152 (207)
                      ++++|++++|+|+++..+..+.  .+...+..  .++|+++|+||+|+.+..             ..++ .++. .+++.
T Consensus        79 ~~~ad~il~V~D~~~~~~~~d~--~i~~~l~~--~~~p~ilv~NK~D~~~~~-------------~~~~~~~~~-~lg~~  140 (439)
T 1mky_A           79 IREADLVLFVVDGKRGITKEDE--SLADFLRK--STVDTILVANKAENLREF-------------EREVKPELY-SLGFG  140 (439)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHH--HHHHHHHH--HTCCEEEEEESCCSHHHH-------------HHHTHHHHG-GGSSC
T ss_pred             HHhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEeCCCCcccc-------------HHHHHHHHH-hcCCC
Confidence            8999999999999886554432  22333333  279999999999984320             1222 3443 46665


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEeeecCCccc
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLV  204 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~  204 (207)
                      +++++||++|.|++++|+++++.+.+....... .............|++.+
T Consensus       141 ~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~-~~~~~~~~kvaivG~~gv  191 (439)
T 1mky_A          141 EPIPVSAEHNINLDTMLETIIKKLEEKGLDLES-KPEITDAIKVAIVGRPNV  191 (439)
T ss_dssp             SCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSS-CCCCCSCEEEEEECSTTS
T ss_pred             CEEEEeccCCCCHHHHHHHHHHhcccccccchh-ccccccCceEEEECCCCC
Confidence            689999999999999999999988643211000 001123344566777654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=1.5e-23  Score=172.72  Aligned_cols=158  Identities=18%  Similarity=0.176  Sum_probs=114.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCC----------cccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----------EDYNRLRP   71 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~~   71 (207)
                      ..||+++|.++|| ||||+|+|++....  ..+..|..+.+...+..++..  +.||||||+          +.|..+..
T Consensus       175 ~~ki~lvG~~nvG-KSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          175 VIQFCLIGRPNVG-KSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             CEEEEEECSTTSS-HHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             CcEEEEEcCCCCC-HHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence            4799999999999 99999999988753  344444444445567777754  789999997          33333332


Q ss_pred             -ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH-HHHHHHh
Q 028595           72 -LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EELRKQI  149 (207)
Q Consensus        72 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~  149 (207)
                       .+++.+|++++|+|+++..+.++.  .|+..+..  .+.|+++|+||+|+.+.+..          ..++. +.+.+.+
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~----------~~~~~~~~~~~~l  317 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDES----------TMKEFEENIRDHF  317 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCTT----------HHHHHHHHHHHHC
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcchH----------HHHHHHHHHHHhc
Confidence             477889999999999999888886  57766654  48999999999999765432          33333 2233332


Q ss_pred             ---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          150 ---GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       150 ---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                         +..+++++||++|.|++++|+.+.+.+..
T Consensus       318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          318 QFLDYAPILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence               33489999999999999999999887763

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.87  E-value=1.5e-22  Score=167.74  Aligned_cols=150  Identities=15%  Similarity=0.145  Sum_probs=115.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCc-ccccc--------ccce
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-DYNRL--------RPLS   73 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-~~~~~--------~~~~   73 (207)
                      ++|+++|.+++| ||||+|+|++...  ...+..|..+.....+.+++  ..+.+|||||.. .+...        ...+
T Consensus       244 ~kV~ivG~pnvG-KSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          244 LRMVIVGKPNVG-KSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             EEEEEECCHHHH-TCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECcCCCc-HHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            799999999999 9999999998753  44555555555566777777  457899999987 65432        2356


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      +..+|++|+|+|++++.++++.  .+++.+    ++.|+++|+||+|+.+..            ..+++..++. .+. +
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~~------------~~~~~~~~~~-~~~-~  380 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEKI------------NEEEIKNKLG-TDR-H  380 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCCC------------CHHHHHHHHT-CST-T
T ss_pred             hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECccccccc------------CHHHHHHHhc-CCC-c
Confidence            7899999999999998887764  334444    378999999999996431            4445555432 334 7


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHh
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      ++++||++|.|++++|+++.+.+.
T Consensus       381 ~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          381 MVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            899999999999999999998765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.87  E-value=7.7e-23  Score=162.93  Aligned_cols=161  Identities=18%  Similarity=0.188  Sum_probs=120.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCC----ccccccccceec---
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----EDYNRLRPLSYR---   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----~~~~~~~~~~~~---   75 (207)
                      ..+|+++|.+++| ||||+++|++.+.. ..|..|........+.+++ ...+.+|||||.    +.+..+...|++   
T Consensus       158 la~V~lvG~~nvG-KSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~  235 (342)
T 1lnz_A          158 LADVGLVGFPSVG-KSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE  235 (342)
T ss_dssp             CCCEEEESSTTSS-HHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             cCeeeeeCCCCCC-HHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence            4579999999999 99999999987632 2333222222222344443 246889999994    345556666655   


Q ss_pred             CCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           76 GADVFVLAFSLVS---RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        76 ~~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      .+|++|+|+|+++   +++++.+ ..|...+..+.   .++|+++|+||+|+.+.              .+..+++++.+
T Consensus       236 ~~d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--------------~e~~~~l~~~l  300 (342)
T 1lnz_A          236 RTRVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEA--------------AENLEAFKEKL  300 (342)
T ss_dssp             HCCEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--------------HHHHHHHHHHC
T ss_pred             hccEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCC--------------HHHHHHHHHHh
Confidence            4999999999998   7888888 78888888765   47999999999998542              23456677777


Q ss_pred             CC-cEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          150 GA-SYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       150 ~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +. .+++++||++++|++++|++|.+.+...+.
T Consensus       301 ~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          301 TDDYPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             hcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence            62 278999999999999999999999876543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.87  E-value=7.9e-22  Score=155.00  Aligned_cols=135  Identities=15%  Similarity=0.056  Sum_probs=113.9

Q ss_pred             eeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChh-hHHHHH
Q 028595           19 LLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVL   96 (207)
Q Consensus        19 ssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~   96 (207)
                      .+|+.+++.+.|. ..|.||+|+.+...+..++   .+.+||+  +++++++++.|++++|++|+|||+++++ ++..+ 
T Consensus        31 ~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-  104 (301)
T 1u0l_A           31 GERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-  104 (301)
T ss_dssp             CCEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-
T ss_pred             CcEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-
Confidence            4799999999998 8999999987765443333   6899999  9999999999999999999999999998 67776 


Q ss_pred             HHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC--CcEEEEeccCCCCCHHHHHHHHHH
Q 028595           97 KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus        97 ~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      ..|+..+..  .++|+++|+||+|+.+.+.            .++++++++.++  + +++++||++|.|++++|..+..
T Consensus       105 ~~~l~~~~~--~~~piilv~NK~DL~~~~~------------v~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          105 DKFLVLAEK--NELETVMVINKMDLYDEDD------------LRKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHH--TTCEEEEEECCGGGCCHHH------------HHHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHH--CCCCEEEEEeHHHcCCchh------------HHHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence            889887765  4899999999999965432            255778888877  6 8999999999999999988754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.86  E-value=2.1e-21  Score=156.09  Aligned_cols=158  Identities=13%  Similarity=0.081  Sum_probs=115.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCcee-eeeeeEEEECCeEEEEEEEeCCCCccccc---------cccce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNR---------LRPLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~~   73 (207)
                      ..+|+++|.+++| ||||+++|++........+..+ ......+..++  ..+.+|||||......         ....+
T Consensus       167 ~~~v~lvG~~gvG-KSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          167 IPTVVIAGHPNVG-KSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SCEEEEECSTTSS-HHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            4689999999999 9999999998874322222211 11122233333  5789999999865321         11123


Q ss_pred             ecCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595           74 YRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  151 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  151 (207)
                      ...+|++++|+|+++..  ++... ..|+..+....++.|+++|+||+|+.+..            ..+++..+++..+.
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~------------~~~~~~~~~~~~~~  310 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEE------------NIKRLEKFVKEKGL  310 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHH------------HHHHHHHHHHHTTC
T ss_pred             HhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChH------------HHHHHHHHHHhcCC
Confidence            45699999999999877  66766 67777776655589999999999996543            23556677777777


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          152 SYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       152 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                       +++++||++|+|++++|+++.+.+..
T Consensus       311 -~~~~iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          311 -NPIKISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             -CCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             -CeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence             89999999999999999999998854

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.86  E-value=1.1e-21  Score=166.26  Aligned_cols=164  Identities=16%  Similarity=0.179  Sum_probs=117.9

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCC--CCc-----cccC------ceeeee-eeEEEE-----CCeEEEEEEEeCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRS--SIW-----DYIP------TVFDNF-SANVVA-----EGTTVNLGLWDTA   61 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~--~~~-----~~~~------t~~~~~-~~~~~~-----~~~~~~l~i~D~~   61 (207)
                      |+...+|+++|..++| ||||+++|+...  +..     .+..      +.|.+. ...+.+     ++..+.++|||||
T Consensus         1 ~~~irnI~IiGh~d~G-KTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTP   79 (599)
T 3cb4_D            1 MKNIRNFSIIAHIDHG-KSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTP   79 (599)
T ss_dssp             CTTEEEEEEECCC-----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECC
T ss_pred             CCCCeEEEEECCCCCC-HHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECC
Confidence            6778899999999999 999999997521  111     1111      112222 111222     5667999999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ  141 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~  141 (207)
                      |+++|...+..+++.+|++|+|+|+++..+.+.. ..|...+..   ++|+++++||+|+...+            ..+.
T Consensus        80 Gh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~------------~~~v  143 (599)
T 3cb4_D           80 GHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAAD------------PERV  143 (599)
T ss_dssp             CCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCC------------HHHH
T ss_pred             CchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCccccc------------HHHH
Confidence            9999999899999999999999999998777776 566555443   78999999999997643            2344


Q ss_pred             HHHHHHHhCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          142 GEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       142 ~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      .+++.+.++..  +++++||++|.|++++|+++++.+..+..
T Consensus       144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~  185 (599)
T 3cb4_D          144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG  185 (599)
T ss_dssp             HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence            56677777752  48999999999999999999999876653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.85  E-value=1.7e-22  Score=166.36  Aligned_cols=154  Identities=17%  Similarity=0.067  Sum_probs=101.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCc--------cccccccceec
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYR   75 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~   75 (207)
                      .+|+++|.++|| ||||+|+|++.++. .+.++.|.+. ............+.+|||||++        .+...+..++.
T Consensus         4 ~~V~ivG~~nvG-KStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVG-KSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSS-HHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            689999999999 99999999987653 2233333332 1122222223568999999986        45566778899


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                      .+|++|+|+|.++..+..+.  .+...+..  .++|+++|+||+|+.+....              +.++. .+++.+++
T Consensus        82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~~~--------------~~~~~-~lg~~~~~  142 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRAN--------------IYDFY-SLGFGEPY  142 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEEECCCC-----C--------------CCSSG-GGSSCCCE
T ss_pred             hCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCccchhh--------------HHHHH-HcCCCCeE
Confidence            99999999999987776553  44555543  47999999999998654321              11122 34555789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++||++|.|+.++++++.+.+.+.
T Consensus       143 ~iSA~~g~gv~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          143 PISGTHGLGLGDLLDAVAEHFKNI  166 (436)
T ss_dssp             ECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred             EEeCcCCCChHHHHHHHHHhcCcc
Confidence            999999999999999999988643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.85  E-value=2.2e-21  Score=152.43  Aligned_cols=157  Identities=15%  Similarity=0.065  Sum_probs=112.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc-cccC-ceeeeeeeEEEECCeEEEEEEEeCCCCc---------cccccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQE---------DYNRLRPL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~   72 (207)
                      ..+|+++|.+++| ||||+|++++.++.. ...+ |........+..+  ...+.+|||||..         .+......
T Consensus         8 ~~~VaIvG~~nvG-KSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            8 CGFIAIVGRPNVG-KSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEECSSSSS-HHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3579999999999 999999999987532 1122 2221112223333  3678899999987         34556678


Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  152 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  152 (207)
                      +++.+|++++|+|.++ -+...  ..+...+..  .+.|+++++||+|+...+..          ..+.+..+++.++..
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~----------~~~~l~~l~~~~~~~  149 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WTPDD--EMVLNKLRE--GKAPVILAVNKVDNVQEKAD----------LLPHLQFLASQMNFL  149 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CCHHH--HHHHHHHHS--SSSCEEEEEESTTTCCCHHH----------HHHHHHHHHTTSCCS
T ss_pred             HHhcCCEEEEEEeCCC-CCHHH--HHHHHHHHh--cCCCEEEEEECcccCccHHH----------HHHHHHHHHHhcCcC
Confidence            8999999999999987 22222  223334432  37999999999999763221          445667777777766


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      .++++||+++.|++++++.+.+.+..
T Consensus       150 ~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          150 DIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             EEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            79999999999999999999987654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.84  E-value=3e-21  Score=163.35  Aligned_cols=164  Identities=13%  Similarity=0.138  Sum_probs=118.8

Q ss_pred             CccceeEEEEecccccceeeeeeeccCC--CCCc-----cccCc------eeeee---eeEEEE---CCeEEEEEEEeCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGR--SSIW-----DYIPT------VFDNF---SANVVA---EGTTVNLGLWDTA   61 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~--~~~~-----~~~~t------~~~~~---~~~~~~---~~~~~~l~i~D~~   61 (207)
                      |+...+|+++|..++| ||||+++|+..  .+..     .+..+      .|.+.   ...+..   ++..+.++|||||
T Consensus         3 ~~~irnI~IiGh~d~G-KTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP   81 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHG-KSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP   81 (600)
T ss_dssp             GGGEEEEEEECC--CC-HHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred             ccCceEEEEECCCCCC-HHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence            3557899999999999 99999999752  1110     01111      11111   111211   5667999999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ  141 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~  141 (207)
                      |+++|...+..+++.+|++|+|+|+++..+.+.. ..|.....   .++|+++++||+|+...+            ..+.
T Consensus        82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~------------~~~v  145 (600)
T 2ywe_A           82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD------------VDRV  145 (600)
T ss_dssp             CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHHH
T ss_pred             CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC------------HHHH
Confidence            9999988888899999999999999998888776 56655543   379999999999997543            2344


Q ss_pred             HHHHHHHhCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          142 GEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       142 ~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      .+++.+.++..  +++++||++|.|++++|+++++.+..+..
T Consensus       146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~  187 (600)
T 2ywe_A          146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKG  187 (600)
T ss_dssp             HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence            56666666752  48999999999999999999999876653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.84  E-value=1.9e-21  Score=160.52  Aligned_cols=153  Identities=18%  Similarity=0.165  Sum_probs=105.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc--------cce
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   73 (207)
                      .+||+++|.+++| ||||+|+|++...  ...+..|..+.....+.++|  ..+.+|||||...+...+        ..+
T Consensus       224 ~~kV~ivG~~nvG-KSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          224 GLKVAIVGRPNVG-KSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             CEEEEEEECTTSS-HHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCEEEEEcCCCCC-HHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4689999999999 9999999998653  33333343344455777787  457899999976654332        346


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      +..+|++++|+|.+++.+...  ..|+..+.    ..|+++|+||+|+.+....          .  ..+.+.  .+ .+
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~~----------~--~~~~~~--~~-~~  359 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQLI----------T--SLEYPE--NI-TQ  359 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGGS----------T--TCCCCT--TC-CC
T ss_pred             hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchhh----------H--HHHHhc--cC-Cc
Confidence            788999999999999877765  35666653    4799999999999766542          1  111111  23 38


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++++||++|.|++++|+++.+.+....
T Consensus       360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          360 IVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999886543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.84  E-value=1.7e-20  Score=152.97  Aligned_cols=166  Identities=11%  Similarity=0.005  Sum_probs=113.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcc---ccCceeeee----eeEEE---------E---CCeEEEEEEEeCCCCc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD---YIPTVFDNF----SANVV---------A---EGTTVNLGLWDTAGQE   64 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~---~~~t~~~~~----~~~~~---------~---~~~~~~l~i~D~~G~~   64 (207)
                      .++|+++|..++| ||||+++|++......   ...+.+...    ...+.         .   ......+.+|||||++
T Consensus         8 ~~~I~vvG~~~~G-KSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~   86 (403)
T 3sjy_A            8 EVNIGVVGHVDHG-KTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE   86 (403)
T ss_dssp             CCEEEEECSTTSS-HHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence            5799999999999 9999999987543211   011110000    00000         0   1223789999999999


Q ss_pred             cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH
Q 028595           65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  144 (207)
Q Consensus        65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~  144 (207)
                      .|......++..+|++++|+|+++..+.... ..|+..+... ...|+++++||+|+.+....        ....++..+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~--------~~~~~~i~~  156 (403)
T 3sjy_A           87 VLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGII-GVKNLIIVQNKVDVVSKEEA--------LSQYRQIKQ  156 (403)
T ss_dssp             GGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHHH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHc-CCCCEEEEEECccccchHHH--------HHHHHHHHH
Confidence            9998888899999999999999987655555 4555555443 23589999999999765421        002223333


Q ss_pred             HHHHhC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          145 LRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       145 ~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +...++  ..+++++||++|.|++++|+.|.+.+..+.
T Consensus       157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            333322  238999999999999999999998876554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.83  E-value=2.5e-20  Score=153.61  Aligned_cols=158  Identities=19%  Similarity=0.143  Sum_probs=107.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc-----------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR-----------   70 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-----------   70 (207)
                      ..||+++|.+++| ||||+|+|++...  ...+..|..+.....+.++|.  .+.+|||+|..+.....           
T Consensus       180 ~~kvaivG~~gvG-KSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          180 AIKVAIVGRPNVG-KSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             CEEEEEECSTTSS-HHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             CceEEEECCCCCC-HHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4799999999999 9999999998864  233334444444567778886  46899999985443221           


Q ss_pred             -cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH-HHHHH
Q 028595           71 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQ  148 (207)
Q Consensus        71 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-~~~~~  148 (207)
                       ..++..+|++++|+|+++..+.++.  .+...+..  .+.|+++|+||+|+.+.+..          ..++.. .+.+.
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~  322 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHREK----------RYDEFTKLFREK  322 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGGG----------CHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchhh----------HHHHHHHHHHHH
Confidence             2356779999999999987666653  34444443  37999999999999765432          333332 22232


Q ss_pred             h---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          149 I---GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       149 ~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +   +..+++++||++|.|++++|+.+.+.+..
T Consensus       323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2   33489999999999999999999887643

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.83  E-value=3.6e-21  Score=153.78  Aligned_cols=146  Identities=18%  Similarity=0.188  Sum_probs=105.1

Q ss_pred             ccccCceeeeeee----------EEEECC----eEEEEEEEeCCCCccccccccceecCCcEEEEEEeCC----------
Q 028595           32 WDYIPTVFDNFSA----------NVVAEG----TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------   87 (207)
Q Consensus        32 ~~~~~t~~~~~~~----------~~~~~~----~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------   87 (207)
                      +.|.||.++.+..          .+.+++    ..+.+.+|||+||+.++.+|.+|+++++++|+|||++          
T Consensus       148 ~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~  227 (354)
T 2xtz_A          148 INYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDE  227 (354)
T ss_dssp             TTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCT
T ss_pred             CCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECccccccccccc
Confidence            4688887655422          223455    6799999999999999999999999999999999998          


Q ss_pred             ChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCccc---------ccCC-CC-CcccCHHHHHHHHHHh-----
Q 028595           88 SRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHY---------LADH-PG-LVPVTTAQGEELRKQI-----  149 (207)
Q Consensus        88 ~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~---------~~~~-~~-~~~v~~~~~~~~~~~~-----  149 (207)
                      +.+++++. ..|+..+...  .+++|++|+|||+|+.+.+..         +.+. |. ..+.+.+++..++...     
T Consensus       228 ~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~  306 (354)
T 2xtz_A          228 QKNRMMET-KELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELY  306 (354)
T ss_dssp             TSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHH-HHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhh
Confidence            88999998 5666666543  268999999999998654321         0000 00 0112357777775431     


Q ss_pred             ----------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          150 ----------GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       150 ----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                                ....+++|||+++.||+++|.++.+.+..
T Consensus       307 ~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~  345 (354)
T 2xtz_A          307 YQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR  345 (354)
T ss_dssp             HHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence                      22256899999999999999999998863

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.83  E-value=1.9e-20  Score=149.60  Aligned_cols=129  Identities=19%  Similarity=0.255  Sum_probs=100.2

Q ss_pred             EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc--CCCCcE
Q 028595           45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPV  112 (207)
Q Consensus        45 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~pi  112 (207)
                      .+.++  .+.+.+|||+||+.++.+|.+|+.+++++|+|||+++          ..++.+. ..|+..+...  .+++|+
T Consensus       187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~pi  263 (353)
T 1cip_A          187 HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSI  263 (353)
T ss_dssp             EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEE
T ss_pred             EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcE
Confidence            34444  4789999999999999999999999999999999999          5678888 5666666543  268999


Q ss_pred             EEEeeCCCcccCccc-------ccCCCCCcccCHHHHHHHHHH-----------hCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595          113 VLVGTKLDLREDKHY-------LADHPGLVPVTTAQGEELRKQ-----------IGASYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       113 ivv~nK~D~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~-----------~~~~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      +|+|||+|+.+.+..       +.+..+  ++..+++..++..           .++ .+++|||+++.||.++|.++.+
T Consensus       264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g--~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~v~~  340 (353)
T 1cip_A          264 ILFLNKKDLFEEKIKKSPLTICYPEYAG--SNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDAVTD  340 (353)
T ss_dssp             EEEEECHHHHHHHHTTSCGGGTCTTCCS--CSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHHHHH
T ss_pred             EEEEECcCchhhhccccchhhcccccCC--CCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHHHHH
Confidence            999999998643210       000001  2477889998873           344 8899999999999999999999


Q ss_pred             HHhCC
Q 028595          175 VVIKP  179 (207)
Q Consensus       175 ~~~~~  179 (207)
                      .+...
T Consensus       341 ~i~~~  345 (353)
T 1cip_A          341 VIIKN  345 (353)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88643

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.83  E-value=1.6e-22  Score=169.12  Aligned_cols=162  Identities=14%  Similarity=0.088  Sum_probs=116.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ...+|+++|..++| ||||+++|.+..+...+.++++..+ ...+..++ ...+.+|||||++.|..++..+++.+|++|
T Consensus         3 r~pkV~IvG~~~vG-KTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            3 RSPVVTIMGHVDHG-KTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCBCEEEESTTTT-HHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCEEEEECCCCCC-HHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            35789999999999 9999999998876655666655444 22333321 236889999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH---HHHhC-CcEEEEe
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RKQIG-ASYYIEC  157 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~-~~~~~e~  157 (207)
                      +|+|+++....+..  .++..+..  .++|+++++||+|+.+.+..         ....+...+   +..++ ..+++++
T Consensus        81 LVVDa~dg~~~qt~--e~l~~~~~--~~vPiIVViNKiDl~~~~~~---------~v~~~l~~~~~~~e~~~~~~~iv~v  147 (537)
T 3izy_P           81 LVVAADDGVMKQTV--ESIQHAKD--AHVPIVLAINKCDKAEADPE---------KVKKELLAYDVVCEDYGGDVQAVHV  147 (537)
T ss_dssp             EECBSSSCCCHHHH--HHHHHHHT--TTCCEEECCBSGGGTTTSCC---------SSSSHHHHTTSCCCCSSSSEEECCC
T ss_pred             EEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEecccccccchH---------HHHHHHHhhhhhHHhcCCCceEEEE
Confidence            99999997666654  23333333  37899999999999754321         011111111   12222 2379999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ||++|.|++++|+.+...+...
T Consensus       148 SAktG~GI~eLle~I~~l~~~~  169 (537)
T 3izy_P          148 SALTGENMMALAEATIALAEML  169 (537)
T ss_dssp             CSSSSCSSHHHHHHHHHHHTTC
T ss_pred             ECCCCCCchhHHHHHHHhhhcc
Confidence            9999999999999999887533

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.6e-21  Score=141.40  Aligned_cols=113  Identities=7%  Similarity=0.051  Sum_probs=85.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc---cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecC----
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG----   76 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~----   76 (207)
                      ..+|+++|.+++| ||||+++|++..+..   .+.++.+..+        ..+.+.+|||||++.+...+..++.+    
T Consensus        48 ~~~i~vvG~~g~G-KSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~  118 (193)
T 2ged_A           48 QPSIIIAGPQNSG-KTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF  118 (193)
T ss_dssp             CCEEEEECCTTSS-HHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence            5699999999999 999999999887543   2333333222        34678899999999998888888876    


Q ss_pred             CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh-----cCCCCcEEEEeeCCCcccCcc
Q 028595           77 ADVFVLAFSLV-SRASYENVLKKWIPELQH-----YSPGVPVVLVGTKLDLREDKH  126 (207)
Q Consensus        77 ~d~~i~v~d~~-~~~s~~~~~~~~~~~i~~-----~~~~~piivv~nK~D~~~~~~  126 (207)
                      +|++++|||++ +.+++..+ ..|+..+..     ..++.|+++|+||+|+.+...
T Consensus       119 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          119 VKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             EEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             CCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence            89999999999 89999988 555554432     225899999999999976653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.82  E-value=1.2e-20  Score=145.35  Aligned_cols=161  Identities=14%  Similarity=0.045  Sum_probs=106.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC-CCccccCc-eeee-eeeEEEECCeEEEEEEEeCCCCcccccccc---------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS-SIWDYIPT-VFDN-FSANVVAEGTTVNLGLWDTAGQEDYNRLRP---------   71 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~-~~~~~~~t-~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~---------   71 (207)
                      ..+|+++|.+++| ||||+++|++.. +...+.++ ++.. ....+..++  ..+.||||||+..+.....         
T Consensus        22 ~~~I~lvG~~g~G-KStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           22 ELRIILVGKTGTG-KSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CEEEEEEECTTSC-HHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            5799999999999 999999999887 44445454 2222 233455555  5689999999876643322         


Q ss_pred             --ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEee-CCCcccCcccccCCCCCcccCH-------HH
Q 028595           72 --LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT-KLDLREDKHYLADHPGLVPVTT-------AQ  141 (207)
Q Consensus        72 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~n-K~D~~~~~~~~~~~~~~~~v~~-------~~  141 (207)
                        .+++++|++++|+|+++..........++..+.......|.++++| |+|+.+...           ..       ++
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~-----------~~~i~~~~~~~  167 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSL-----------MDYMHDSDNKA  167 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCH-----------HHHHHHCCCHH
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccH-----------HHHHHhcchHH
Confidence              2678899999999998633322211223332211111345655555 999974321           22       34


Q ss_pred             HHHHHHHhCCcE--E--EEeccCCCCCHHHHHHHHHHHHhC
Q 028595          142 GEELRKQIGASY--Y--IECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       142 ~~~~~~~~~~~~--~--~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++.+++.++...  +  +++||+++.|++++|.++.+.+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          168 LSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            566777776421  2  789999999999999999998865

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=5.5e-20  Score=150.23  Aligned_cols=162  Identities=13%  Similarity=0.078  Sum_probs=105.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC---CCccccC--ceeeeeee-EEEE-------------C--C----eEEEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS---SIWDYIP--TVFDNFSA-NVVA-------------E--G----TTVNLGLW   58 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~l~i~   58 (207)
                      ..+|+++|..++| ||||+++|++..   +..+..+  |+...|.. .+..             +  +    ....+.+|
T Consensus         8 ~~~I~iiG~~d~G-KSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            8 EVNIGMVGHVDHG-KTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CEEEEEESCTTSS-HHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             ceEEEEEcCCCCC-HHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            5799999999999 999999998543   3333334  44333322 2211             1  2    13789999


Q ss_pred             eCCCCccccccccceecCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC
Q 028595           59 DTAGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL  134 (207)
Q Consensus        59 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~  134 (207)
                      ||||++.|.......+..+|++|+|+|+++    +++.+.+ ..| ..+    ...|+++++||+|+.+....       
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~-~~l----~~~~iivv~NK~Dl~~~~~~-------  153 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MAL-EIL----GIDKIIIVQNKIDLVDEKQA-------  153 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHH-HHT----TCCCEEEEEECTTSSCTTTT-------
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHH-HHc----CCCeEEEEEEccCCCCHHHH-------
Confidence            999999987777777788999999999995    4555554 222 221    23589999999999765421       


Q ss_pred             cccCHHHHHHHHHHh--CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          135 VPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       135 ~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                       ....++++++++.+  ...+++++||++|.|++++++.|.+.+..+.
T Consensus       154 -~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~  200 (408)
T 1s0u_A          154 -EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK  200 (408)
T ss_dssp             -TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred             -HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence             01345677777653  1238999999999999999999998776543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.82  E-value=9e-22  Score=158.22  Aligned_cols=161  Identities=11%  Similarity=0.029  Sum_probs=94.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC-CCcccc--------Cceeeee-eeEEEECCeEEEEEEEeCCCC-------cc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS-SIWDYI--------PTVFDNF-SANVVAEGTTVNLGLWDTAGQ-------ED   65 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~-~~~~~~--------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~-------~~   65 (207)
                      ..++|+++|.+++| ||||++++.+.. +...+.        +|++..+ ...+..++..+.+.+|||||+       +.
T Consensus        36 ~~~~I~vvG~~g~G-KSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           36 FEFTLMVVGESGLG-KSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CEECEEECCCTTSC-HHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCEEEEEEcCCCCC-HHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            35789999999999 999999976553 333332        4554333 233444677789999999998       67


Q ss_pred             cccccc-------ceecCCcE-----------EEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595           66 YNRLRP-------LSYRGADV-----------FVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH  126 (207)
Q Consensus        66 ~~~~~~-------~~~~~~d~-----------~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~  126 (207)
                      +..++.       .|+..+++           .+++|++++ ..++..+...|+..+   ..++|+++|+||+|+...++
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e  191 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE  191 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence            777765       55554433           346677665 455555533455554   35799999999999976554


Q ss_pred             cccCCCCCcccCH--HHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          127 YLADHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       127 ~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +          ..  +++..+++.+++ +++++||+++.+ ++.|.++++.+...
T Consensus       192 v----------~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          192 R----------ERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             H----------HHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHHT
T ss_pred             H----------HHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            2          33  577788888887 899999999999 88888888887643

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.81  E-value=4.1e-20  Score=153.72  Aligned_cols=156  Identities=15%  Similarity=0.054  Sum_probs=110.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC-------CCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceec
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS-------SIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~-------~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~   75 (207)
                      ..+|+++|..++| ||||+++|++..       +..+..+.++... ...+..++  ..+.+|||||++.|......++.
T Consensus        19 ~~~I~iiG~~d~G-KSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           19 NINLGIFGHIDHG-KTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEECTTSS-HHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCh-HHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            4799999999999 999999999776       2222222222111 11334455  67899999999999888888899


Q ss_pred             CCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-C-
Q 028595           76 GADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-G-  150 (207)
Q Consensus        76 ~~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-  150 (207)
                      .+|++|+|+|+++   +++.+.+ .    .+..  .++|+++++||+|+.+....        ....+++++++... + 
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e~l-~----~~~~--~~ip~IvviNK~Dl~~~~~~--------~~~~~~l~~~l~~~~~~  160 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGEHM-L----ILDH--FNIPIIVVITKSDNAGTEEI--------KRTEMIMKSILQSTHNL  160 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHH-H----HHHH--TTCCBCEEEECTTSSCHHHH--------HHHHHHHHHHHHHSSSG
T ss_pred             hCCEEEEEEecCCCccHHHHHHH-H----HHHH--cCCCEEEEEECCCcccchhH--------HHHHHHHHHHHhhhccc
Confidence            9999999999998   5555554 1    2222  27888999999999753211        01345566666655 2 


Q ss_pred             -CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          151 -ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       151 -~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                       ..+++++||++|.|++++++.|.+.+.
T Consensus       161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          161 KNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence             238999999999999999999999875

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.81  E-value=5.2e-20  Score=145.22  Aligned_cols=141  Identities=18%  Similarity=0.201  Sum_probs=103.7

Q ss_pred             ccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCC----------ChhhHHHHHHHHHHHH
Q 028595           34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPEL  103 (207)
Q Consensus        34 ~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~i  103 (207)
                      ..||+|.. ...+.+++  +.+++|||+||+.++++|.+|+++++++|+|||++          +.+++.+. ..|+..+
T Consensus       151 r~~TiGi~-~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i  226 (327)
T 3ohm_A          151 RVPTTGII-EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTI  226 (327)
T ss_dssp             CCCCCSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHH
T ss_pred             cCceeeEE-EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHH
Confidence            44556532 23444454  88999999999999999999999999999999665          67788877 4555555


Q ss_pred             hhc-C-CCCcEEEEeeCCCcccCcc-------cccCCCCCcccCHHHHHHHHH----------HhCCcEEEEeccCCCCC
Q 028595          104 QHY-S-PGVPVVLVGTKLDLREDKH-------YLADHPGLVPVTTAQGEELRK----------QIGASYYIECSSKTQQN  164 (207)
Q Consensus       104 ~~~-~-~~~piivv~nK~D~~~~~~-------~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~e~Sa~~~~~  164 (207)
                      ... . +++|++|+|||+|+.+.+.       .+.+..+ ..++.+++.+|..          ..++ .+++|||+++.|
T Consensus       227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g-~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~n  304 (327)
T 3ohm_A          227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG-PQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTEN  304 (327)
T ss_dssp             HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCS-CSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHH
T ss_pred             hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccC-CCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHH
Confidence            432 2 6899999999999875431       1111111 1247788888843          3444 788999999999


Q ss_pred             HHHHHHHHHHHHhCCC
Q 028595          165 VKAVFDAAIKVVIKPP  180 (207)
Q Consensus       165 i~~~f~~i~~~~~~~~  180 (207)
                      |+.+|..+.+.+++..
T Consensus       305 V~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          305 IRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.81  E-value=2.8e-20  Score=155.94  Aligned_cols=117  Identities=10%  Similarity=0.043  Sum_probs=82.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC-----------------CCccccC---ceeeee-eeEEEECCeEEEEEEEeCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS-----------------SIWDYIP---TVFDNF-SANVVAEGTTVNLGLWDTA   61 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~-----------------~~~~~~~---t~~~~~-~~~~~~~~~~~~l~i~D~~   61 (207)
                      ...+|+++|.+++| ||||+++|+...                 ...++.+   ..|.+. .....+....+.+.|||||
T Consensus        12 ~~r~IaIiG~~~aG-KTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAG-KTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSS-HHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             cCCEEEEECCCCCc-HHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            46799999999999 999999996111                 0111000   011111 1122222234779999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      |++++...+..+++.+|++|+|+|+++..+.+.. ..| ..+..  .++|+++++||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~--~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRL--RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHT--TTCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEeCCCCccc
Confidence            9999999999999999999999999998777765 444 34433  27999999999998643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.81  E-value=1.8e-19  Score=144.80  Aligned_cols=160  Identities=15%  Similarity=0.110  Sum_probs=109.4

Q ss_pred             EEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCeEEEEEEEeCCCCcc---------ccccccceecC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLSYRG   76 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~~~   76 (207)
                      |+++|.+++| ||||+|+|++..... .+..+..+.....+.++|  ..+.+|||+|.-.         +.... ..+..
T Consensus       182 V~lvG~~naG-KSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~  257 (364)
T 2qtf_A          182 IGIVGYTNSG-KTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY  257 (364)
T ss_dssp             EEEECBTTSS-HHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred             EEEECCCCCC-HHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence            8999999999 999999999887532 222222233455777888  4578999999622         22222 24678


Q ss_pred             CcEEEEEEeCCChh--hHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-C-C
Q 028595           77 ADVFVLAFSLVSRA--SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-G-A  151 (207)
Q Consensus        77 ~d~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-~  151 (207)
                      +|++++|+|++++.  ..... ..|...+.... .+.|+++|+||+|+......         ...+.+..+++.+ . .
T Consensus       258 aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~---------~~~~~~~~l~~~l~~~~  327 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDLY---------KKLDLVEKLSKELYSPI  327 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHH---------HHHHHHHHHHHHHCSCE
T ss_pred             CCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchHH---------HHHHHHHHHHHHhcCCC
Confidence            99999999999876  45444 55666665543 57899999999998643210         0123455556665 2 2


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          152 SYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       152 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      .+++++||+++.|++++++.+.+.+..+.
T Consensus       328 ~~~~~~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          328 FDVIPISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence            26789999999999999999998776543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.80  E-value=1.9e-19  Score=144.30  Aligned_cols=129  Identities=15%  Similarity=0.178  Sum_probs=91.3

Q ss_pred             EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc--CCCCcE
Q 028595           45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPV  112 (207)
Q Consensus        45 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~pi  112 (207)
                      .+.+++  +.+.+|||+||+.++.+|.+|+.+++++|||||+++          ..++.+. ..|+..+...  .+++|+
T Consensus       195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEE
T ss_pred             EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCE
Confidence            344444  789999999999999999999999999999999999          7899988 5566655443  268999


Q ss_pred             EEEeeCCCcccCccc-------ccCCCCCcccCHHHHHHHHH-----------HhCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595          113 VLVGTKLDLREDKHY-------LADHPGLVPVTTAQGEELRK-----------QIGASYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       113 ivv~nK~D~~~~~~~-------~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      +|++||+|+.+.+..       +.+..+ ..+..+++..++.           ..++ .+++|||+++.||+++|.++.+
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g-~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~  349 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEG-DPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKD  349 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCS-CTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccC-CCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHHHHHH
Confidence            999999998643210       000001 1146788888762           2344 7899999999999999999999


Q ss_pred             HHhC
Q 028595          175 VVIK  178 (207)
Q Consensus       175 ~~~~  178 (207)
                      .+..
T Consensus       350 ~i~~  353 (362)
T 1zcb_A          350 TILH  353 (362)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.80  E-value=1.7e-19  Score=147.45  Aligned_cols=162  Identities=12%  Similarity=0.073  Sum_probs=112.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC---CCccccC--ceeeeeee-EEEE-------------C--C----eEEEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS---SIWDYIP--TVFDNFSA-NVVA-------------E--G----TTVNLGLW   58 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~l~i~   58 (207)
                      ..+|+++|..++| ||||+++|++..   +..+..+  |+...|.. .+..             +  +    ....+.+|
T Consensus        10 ~~~I~iiG~~~~G-KSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   88 (410)
T 1kk1_A           10 EVNIGMVGHVDHG-KTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   88 (410)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             ccEEEEECCCCCC-HHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence            4789999999999 999999998543   2333334  44333322 2211             1  1    13789999


Q ss_pred             eCCCCccccccccceecCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC
Q 028595           59 DTAGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL  134 (207)
Q Consensus        59 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~  134 (207)
                      ||||++.|.......+..+|++|+|+|+++    +++.+.+ ..+ ..+    ...|+++++||+|+.+....       
T Consensus        89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~-~~~----~~~~iivviNK~Dl~~~~~~-------  155 (410)
T 1kk1_A           89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MAL-QII----GQKNIIIAQNKIELVDKEKA-------  155 (410)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHH-HHH----TCCCEEEEEECGGGSCHHHH-------
T ss_pred             ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHc----CCCcEEEEEECccCCCHHHH-------
Confidence            999999987766677778999999999995    4555554 222 222    23589999999999764320       


Q ss_pred             cccCHHHHHHHHHHh--CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          135 VPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       135 ~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                       ....++++++++..  ...+++++||++|.|++++++.|.+.+..+.
T Consensus       156 -~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~  202 (410)
T 1kk1_A          156 -LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK  202 (410)
T ss_dssp             -HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             -HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence             01334556665542  2238999999999999999999998776554

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.80  E-value=4.2e-20  Score=140.54  Aligned_cols=165  Identities=15%  Similarity=0.106  Sum_probs=105.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCc--eeeee-eeEEEECCeEEEEEEEeCCCCc-----------ccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPT--VFDNF-SANVVAEGTTVNLGLWDTAGQE-----------DYNRL   69 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t--~~~~~-~~~~~~~~~~~~l~i~D~~G~~-----------~~~~~   69 (207)
                      .+||+++|.+++| ||||+|+|++..+.....++  ++... ...+..++  ..+.||||||..           .+...
T Consensus        29 ~~~i~lvG~~g~G-KStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           29 QLRIVLVGKTGAG-KSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             ceEEEEECCCCCC-HHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            5799999999999 99999999998875554442  22222 33555666  467899999943           33344


Q ss_pred             ccceecCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           70 RPLSYRGADVFVLAFSLVSRASY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      ...+++++|++|+|+|+++....  ..+ ..+...+... ...|+++|+||+|+.+.... .+   ......+.++.+++
T Consensus       106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~-~~---~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGER-ARSFMILIFTRKDDLGDTNL-HD---YLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHTTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHHHH
T ss_pred             HHhcCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhh-ccceEEEEEeCCccCCcccH-HH---HHHhchHHHHHHHH
Confidence            45556788999999998764332  222 2222222211 24699999999998765432 00   00001246888889


Q ss_pred             HhCCcEEEEeccCCC-----CCHHHHHHHHHHHHhC
Q 028595          148 QIGASYYIECSSKTQ-----QNVKAVFDAAIKVVIK  178 (207)
Q Consensus       148 ~~~~~~~~e~Sa~~~-----~~i~~~f~~i~~~~~~  178 (207)
                      ..+. .|+.+++..+     .++.++|..+.+.+.+
T Consensus       180 ~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            9987 7777776644     6899999998887753

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.80  E-value=3.6e-19  Score=143.95  Aligned_cols=130  Identities=15%  Similarity=0.230  Sum_probs=97.8

Q ss_pred             EEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc--CCCCcEE
Q 028595           46 VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVV  113 (207)
Q Consensus        46 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~pii  113 (207)
                      +.+++  +.+.+|||+||+.++.+|..|+++++++|+|||+++          .+++.++ ..|+..+...  .+++|++
T Consensus       212 ~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~pii  288 (402)
T 1azs_C          212 FQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVI  288 (402)
T ss_dssp             EEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEE
T ss_pred             eecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEE
Confidence            44454  889999999999999999999999999999999999          8999998 6777777654  2689999


Q ss_pred             EEeeCCCcccCcc---c--cc----CC------------CCCcccCHHHHHHHH-----HHh-------CCcEEEEeccC
Q 028595          114 LVGTKLDLREDKH---Y--LA----DH------------PGLVPVTTAQGEELR-----KQI-------GASYYIECSSK  160 (207)
Q Consensus       114 vv~nK~D~~~~~~---~--~~----~~------------~~~~~v~~~~~~~~~-----~~~-------~~~~~~e~Sa~  160 (207)
                      |+|||+|+...+.   +  +.    +.            ++.. ...+++..|+     +..       ....+++|||+
T Consensus       289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~-~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGED-PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCC-HHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEChhhhhhhhcccccchhhccccccccccccccccccCCc-ccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            9999999865432   1  00    00            0100 1245666664     221       12267899999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++.||+++|.++.+.+...
T Consensus       368 d~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHH
Confidence            9999999999998887643

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.79  E-value=2e-19  Score=152.42  Aligned_cols=166  Identities=15%  Similarity=0.086  Sum_probs=108.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcc----ccCceeeeeeeEE-------------EECCeEEEEEEEeCCCCccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD----YIPTVFDNFSANV-------------VAEGTTVNLGLWDTAGQEDY   66 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~----~~~t~~~~~~~~~-------------~~~~~~~~l~i~D~~G~~~~   66 (207)
                      ..+|+++|..++| ||||+++|.+..+...    ..++++..+....             .++.....+.+|||||++.|
T Consensus         5 ~~~V~IvGh~d~G-KTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            5 SPIVSVLGHVDHG-KTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCEEEEECSTTSS-HHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CcEEEEECCCCCc-HHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            4689999999999 9999999987654321    1223333221100             00011125899999999999


Q ss_pred             cccccceecCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC-------CCcc
Q 028595           67 NRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP-------GLVP  136 (207)
Q Consensus        67 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~-------~~~~  136 (207)
                      ..++..+++.+|++|+|+|+++   +++++.+ . +   +..  .++|+++++||+|+.+........+       ....
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~-~---l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEAL-N-I---LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H-H---HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H-H---HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999999999999999999999   6776655 2 2   222  3799999999999965321000000       0000


Q ss_pred             c---CHH---HHHHHHHHhC--------------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          137 V---TTA---QGEELRKQIG--------------ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       137 v---~~~---~~~~~~~~~~--------------~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      +   ..+   +........+              ..+++.+||++|.|++++++++...+.
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            0   000   1111112222              237899999999999999999998775

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.79  E-value=1.9e-20  Score=155.04  Aligned_cols=154  Identities=17%  Similarity=0.069  Sum_probs=103.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCC--------Ccccccccccee
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAG--------QEDYNRLRPLSY   74 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G--------~~~~~~~~~~~~   74 (207)
                      ..+|+++|.++|| ||||+|+|++.++. ...++.|.+. .....+......+.+|||||        ++.+...+..++
T Consensus        23 ~~~V~lvG~~nvG-KSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           23 KPVVAIVGRPNVG-KSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             CCEEEEECSSSSS-HHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCc-HHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            3589999999999 99999999988753 2223334333 22333444446789999999        666777788889


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      .++|++|+|+|..+..+..+  ..+...+.+  .+.|+++|+||+|+.+....              ..++ ..++....
T Consensus       101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~~--------------~~e~-~~lg~~~~  161 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN--------------IYDF-YSLGFGEP  161 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-----------------------CCS-GGGSSSSE
T ss_pred             hhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhhh--------------HHHH-HHcCCCce
Confidence            99999999999887544443  244555544  48999999999998643221              1111 12344456


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +++||.+|.|+.++++.+.+.+..
T Consensus       162 ~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          162 YPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             EECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             EEeecccccchHHHHHHHHhhccc
Confidence            799999999999999999887754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.79  E-value=2.6e-20  Score=155.21  Aligned_cols=156  Identities=10%  Similarity=-0.028  Sum_probs=99.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CCccccC---------------------------ceeeee-eeEEEECCeEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWDYIP---------------------------TVFDNF-SANVVAEGTTV   53 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~~~~---------------------------t~~~~~-~~~~~~~~~~~   53 (207)
                      .+||+++|..++| ||||+++|++..  +...+.+                           ..|.+. .....++...+
T Consensus        33 ~~ki~iiG~~~~G-KSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           33 HLSFVVLGHVDAG-KSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             EEEEEEESCGGGT-HHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            5799999999999 999999997541  1111000                           012122 11223334457


Q ss_pred             EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHH-----HHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc
Q 028595           54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-----VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL  128 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~  128 (207)
                      .+.||||||+++|......++..+|++|+|+|+++.++...     .....+..+... ...|+++|+||+|+.+.+.. 
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~-  189 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ-  189 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHH-
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHH-
Confidence            89999999999999988999999999999999999754321     102222222221 23579999999999764321 


Q ss_pred             cCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHH
Q 028595          129 ADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  167 (207)
Q Consensus       129 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~  167 (207)
                           ......+++..+...+++    .+++++||++|.|+++
T Consensus       190 -----~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          190 -----RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             -----HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             -----HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence                 000012344555555553    3899999999999975

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.79  E-value=3.5e-20  Score=143.84  Aligned_cols=160  Identities=11%  Similarity=-0.003  Sum_probs=93.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCC-Cccc-------cCceeeee-eeEEEECCeEEEEEEEeCCCCccc-------
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSS-IWDY-------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY-------   66 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~-~~~~-------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~-------   66 (207)
                      ..++|+++|.+++| ||||+|++++... ...+       .+|++... ...+..++..+.+.+|||||....       
T Consensus         7 ~~~~I~vvG~~g~G-KSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            7 FEFTLMVVGESGLG-KSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             CEEEEEEEECTTSS-HHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             cEEEEEEECCCCCC-HHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            35899999999999 9999999776654 3344       55655444 334444566689999999997322       


Q ss_pred             cccc-------ccee-------------cCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595           67 NRLR-------PLSY-------------RGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        67 ~~~~-------~~~~-------------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~  125 (207)
                      ..+.       ..|+             ..+|+++++++.+... ...+  ..++..+..   ++|+++|+||+|+....
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCCHH
Confidence            2221       1222             2377999999776522 2222  345566654   79999999999986443


Q ss_pred             ccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          126 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      +.        ....+.+.+.....++ +++++||.++++++++++++.+.+.
T Consensus       161 e~--------~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          161 EC--------QQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HH--------HHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTCS
T ss_pred             HH--------HHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCCC
Confidence            21        0022345556666777 7899999999999999999988763

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.78  E-value=3.7e-20  Score=151.13  Aligned_cols=165  Identities=15%  Similarity=0.079  Sum_probs=115.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCC--------CCCcc--cc-----Cceeeee-eeEEEECCeEEEEEEEeCCCCcccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR--------SSIWD--YI-----PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN   67 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~--------~~~~~--~~-----~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~   67 (207)
                      ..+|+++|..++| ||||+++|++.        .+...  ..     .+.|.+. .....++.....+.+|||||+++|.
T Consensus        11 ~~~I~iiG~~~~G-KSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~   89 (405)
T 2c78_A           11 HVNVGTIGHVDHG-KTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   89 (405)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             eEEEEEEcCCCCC-HHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence            4799999999999 99999999863        11110  00     0112222 1223333344678999999999998


Q ss_pred             ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595           68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR  146 (207)
Q Consensus        68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~  146 (207)
                      .....++..+|++|+|+|+++....+.  ..++..+...  ++| +++++||+|+.+....       .....+++++++
T Consensus        90 ~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~-------~~~~~~~~~~~l  158 (405)
T 2c78_A           90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPEL-------LDLVEMEVRDLL  158 (405)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHHH-------HHHHHHHHHHHH
Confidence            888888999999999999998765444  3455555443  678 8999999999753221       001234677788


Q ss_pred             HHhCC----cEEEEeccCCCCC------------------HHHHHHHHHHHHhCCC
Q 028595          147 KQIGA----SYYIECSSKTQQN------------------VKAVFDAAIKVVIKPP  180 (207)
Q Consensus       147 ~~~~~----~~~~e~Sa~~~~~------------------i~~~f~~i~~~~~~~~  180 (207)
                      +.+++    .+++++||++|.|                  +.++++.+.+.+..+.
T Consensus       159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~  214 (405)
T 2c78_A          159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV  214 (405)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC
Confidence            88774    4899999999987                  7888888877765443

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.78  E-value=5.1e-19  Score=145.62  Aligned_cols=157  Identities=13%  Similarity=0.018  Sum_probs=102.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CCcc-----------------------------ccCceeeeeeeEEEECCeE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWD-----------------------------YIPTVFDNFSANVVAEGTT   52 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~-----------------------------~~~t~~~~~~~~~~~~~~~   52 (207)
                      ..+|+++|..++| ||||+++|+...  +...                             ..+.++.... ...+....
T Consensus        17 ~~~i~iiG~~d~G-KSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~-~~~~~~~~   94 (439)
T 3j2k_7           17 HVNVVFIGHVDAG-KSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVG-RAYFETEK   94 (439)
T ss_pred             eeEEEEEeCCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEe-EEEEecCC
Confidence            5799999999999 999999995431  1110                             1111221111 11222334


Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh-------HHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-------YENVLKKWIPELQHYSPGVP-VVLVGTKLDLRED  124 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~  124 (207)
                      ..+.+|||||+++|......++..+|++|+|+|+++...       .+.  ...+..+..  .++| +++++||+|+...
T Consensus        95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt--~e~l~~~~~--~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT--REHAMLAKT--AGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH--HHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence            689999999999998888888999999999999998632       111  122222222  2566 9999999998542


Q ss_pred             cccccCCCCCcccCHHHHHHHHHHhCC-----cEEEEeccCCCCCHHHHHH
Q 028595          125 KHYLADHPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQNVKAVFD  170 (207)
Q Consensus       125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~  170 (207)
                      ...    ........++...+++.+++     .+++++||++|.|+.++++
T Consensus       171 ~~~----~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          171 NWS----NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chH----HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            100    00000133556667766664     3799999999999999655

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.78  E-value=6.6e-19  Score=131.03  Aligned_cols=161  Identities=11%  Similarity=-0.065  Sum_probs=101.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCcc----------cccccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQED----------YNRLRP   71 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~   71 (207)
                      ...+|+++|.+++| ||||++++++..+...+.|+.|..+. ..+.+++   .+.+|||||...          ++....
T Consensus        25 ~~~~v~lvG~~g~G-KSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           25 TGIEVAFAGRSNAG-KSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             CSEEEEEEECTTSS-HHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCcEEEEECCCCCC-HHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            35689999999999 99999999988755556677765543 2333333   467999999743          222223


Q ss_pred             cee---cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           72 LSY---RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        72 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                      .++   ..++++++++|+++..+....  .+...+..  .+.|+++++||+|+....+.        +.....+..++..
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s~~~~--------~~~~~~~~~~~~~  168 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASGAR--------KAQLNMVREAVLA  168 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHHHH--------HHHHHHHHHHHGG
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCCchhH--------HHHHHHHHHHHHh
Confidence            344   468999999999987555431  22222222  37899999999998643210        0123566667666


Q ss_pred             hC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          149 IG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       149 ~~-~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      .+ ...++++||+++.|++++++.+.+.+.+.
T Consensus       169 ~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          169 FNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             GCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             cCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence            65 23678999999999999999998876543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.77  E-value=2.3e-19  Score=147.60  Aligned_cols=155  Identities=14%  Similarity=0.021  Sum_probs=102.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CCcc----------ccCceeeee-------------------e-eEEEECCe
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWD----------YIPTVFDNF-------------------S-ANVVAEGT   51 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~----------~~~t~~~~~-------------------~-~~~~~~~~   51 (207)
                      ..+|+++|..++| ||||+++|++..  +...          ..+|.+..+                   . ....+...
T Consensus        24 ~~~i~iiG~~~~G-KSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~  102 (434)
T 1zun_B           24 MLRFLTCGNVDDG-KSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA  102 (434)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             ceEEEEEECCCCC-HHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence            4799999999999 999999997553  1111          112221111                   0 01112223


Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  131 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~  131 (207)
                      ...+.+|||||+++|......++..+|++|+|+|+++....+..  .++..+... .-.|+++|+||+|+.+....    
T Consensus       103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~----  175 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL-GIKHIVVAINKMDLNGFDER----  175 (434)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCEEEEEEECTTTTTSCHH----
T ss_pred             CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc-CCCeEEEEEEcCcCCcccHH----
Confidence            46789999999999988888889999999999999986544332  343343332 12369999999999763210    


Q ss_pred             CCCcccCHHHHHHHHHHhC--C--cEEEEeccCCCCCHHHH
Q 028595          132 PGLVPVTTAQGEELRKQIG--A--SYYIECSSKTQQNVKAV  168 (207)
Q Consensus       132 ~~~~~v~~~~~~~~~~~~~--~--~~~~e~Sa~~~~~i~~~  168 (207)
                        ......++.+.+++.++  .  .+++++||++|.|++++
T Consensus       176 --~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          176 --VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             --HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             --HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence              00012456777888877  2  38999999999999984

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.77  E-value=5.6e-19  Score=142.26  Aligned_cols=150  Identities=10%  Similarity=-0.049  Sum_probs=105.5

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   85 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   85 (207)
                      +|+++|..++| ||||+++|+      ....|+...+   ..+......+.+|||||+++|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~G-KSTL~~~L~------~~giTi~~~~---~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSG-RTSLAANLG------KKGTSSDITM---YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSS-HHHHHHTTS------EEEEESSSEE---EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCC-HHHHHHHHH------hCCEEEEeeE---EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999 999999998      1112222111   1233334568999999999997777777899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcE-EEEee-CCCcccCcccccCCCCCcccCHHHHHHHHHHhC--CcEEEE--ecc
Q 028595           86 LVSRASYENVLKKWIPELQHYSPGVPV-VLVGT-KLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIE--CSS  159 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~~~~~pi-ivv~n-K~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e--~Sa  159 (207)
                       ++. ..... ..++..+...  ++|. ++++| |+|+ +.+..        ....++++++++.++  ..++++  +||
T Consensus        93 -~~g-~~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~--------~~~~~~i~~~l~~~~~~~~~ii~~~~SA  158 (370)
T 2elf_A           93 -PQG-LDAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHAI--------DELKAKLKVITSGTVLQDWECISLNTNK  158 (370)
T ss_dssp             -TTC-CCHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHHH--------HHHHHHHHHHTTTSTTTTCEEEECCCCT
T ss_pred             -CCC-CcHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHHH--------HHHHHHHHHHHHhcCCCceEEEeccccc
Confidence             543 33333 3455454443  6777 88899 9999 43221        001245666666554  248999  999


Q ss_pred             CC---CCCHHHHHHHHHHHHhCC
Q 028595          160 KT---QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~---~~~i~~~f~~i~~~~~~~  179 (207)
                      ++   +.|++++++.|.+.+...
T Consensus       159 ~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          159 SAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             TSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             ccCcCCCCHHHHHHHHHhhcccc
Confidence            99   999999999999887544

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.77  E-value=1.8e-19  Score=146.67  Aligned_cols=165  Identities=15%  Similarity=0.051  Sum_probs=113.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC-------CCcc--ccC-----ceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS-------SIWD--YIP-----TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~-------~~~~--~~~-----t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      ..||+++|..++| ||||+++|++..       +...  ...     ..+.+. .....++.....+.+|||||+++|..
T Consensus         3 ~~~I~iiG~~~~G-KSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            3 HVNVGTIGHVDHG-KTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             EEEEEEESSTTSS-HHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             eEEEEEEeCCCCC-HHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            4699999999999 999999998631       1100  000     011111 11122333346788999999999887


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      ....++..+|++|+|+|+++....+..  .++..+..  .++| +++++||+|+.+....       .....++++++++
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~--~~vp~iivviNK~Dl~~~~~~-------~~~~~~~~~~~l~  150 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQ--IGVEHVVVYVNKADAVQDSEM-------VELVELEIRELLT  150 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHH--TTCCCEEEEEECGGGCSCHHH-------HHHHHHHHHHHHH
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCeEEEEEECcccCCCHHH-------HHHHHHHHHHHHH
Confidence            778888999999999999986544433  22333333  2678 7899999999753221       0013356778888


Q ss_pred             HhCC----cEEEEeccCCCCC----------HHHHHHHHHHHHhCCC
Q 028595          148 QIGA----SYYIECSSKTQQN----------VKAVFDAAIKVVIKPP  180 (207)
Q Consensus       148 ~~~~----~~~~e~Sa~~~~~----------i~~~f~~i~~~~~~~~  180 (207)
                      .+++    .+++++||++|.|          +.++++.+.+.+..+.
T Consensus       151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~  197 (397)
T 1d2e_A          151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT  197 (397)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred             HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence            8774    4899999999765          8999999988776543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.76  E-value=2e-20  Score=155.26  Aligned_cols=156  Identities=15%  Similarity=0.187  Sum_probs=106.4

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ...+|+++|..++| ||||+++|.+..+.....+.++... ...+..++  ..+.+|||||++.|..++..++..+|++|
T Consensus         3 R~~~V~IvGhvd~G-KTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            3 RAPVVTIMGHVDHG-KTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCEEEEESTTSS-SHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCeEEEEECCCCCC-HHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            45689999999999 9999999987655443333332221 11222334  46789999999999999999999999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc-cccCCCCCcccCHHHHHHHHHHhC-CcEEEE
Q 028595           82 LAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-YLADHPGLVPVTTAQGEELRKQIG-ASYYIE  156 (207)
Q Consensus        82 ~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e  156 (207)
                      +|+|+++   +++.+.+     ..+..  .++|+++++||+|+.+.+. .........       ..+++.++ ..++++
T Consensus        80 LVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~-------~~~~~~~~~~~~~v~  145 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQY-------GILPEEWGGESQFVH  145 (501)
T ss_dssp             EEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCC-------CCCTTCCSSSCEEEE
T ss_pred             EEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHh-------hhhHHHhCCCccEEE
Confidence            9999988   4444433     22222  3789999999999975321 100000000       00112233 238999


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +||++|.|++++|++++..
T Consensus       146 vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          146 VSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             CCTTTCTTCTTHHHHTTTT
T ss_pred             EeeeeccCcchhhhhhhhh
Confidence            9999999999999998754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.76  E-value=4.5e-19  Score=140.39  Aligned_cols=124  Identities=19%  Similarity=0.253  Sum_probs=95.1

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhh-cC-CCCcEEEEeeCC
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQH-YS-PGVPVVLVGTKL  119 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~i~~-~~-~~~piivv~nK~  119 (207)
                      .+.+++|||+||+.++++|.+|+++++++|+|||++          +.+++.+. ..|+..+.. .. +++|++|+|||+
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEECc
Confidence            488999999999999999999999999999999999          78888888 455555433 22 689999999999


Q ss_pred             CcccCccc-------ccCCCCCcccCHHHHHHHHHH-h-------------------------CCcEEEEeccCCCCCHH
Q 028595          120 DLREDKHY-------LADHPGLVPVTTAQGEELRKQ-I-------------------------GASYYIECSSKTQQNVK  166 (207)
Q Consensus       120 D~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~-~-------------------------~~~~~~e~Sa~~~~~i~  166 (207)
                      |+.+.+..       +.+..+.  ...+++.+|+.. +                         +...+++|||+++.||+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~--~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~  316 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGG--DNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK  316 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCT--TCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCC--CCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence            98653221       1111111  256677665543 3                         12368899999999999


Q ss_pred             HHHHHHHHHHhC
Q 028595          167 AVFDAAIKVVIK  178 (207)
Q Consensus       167 ~~f~~i~~~~~~  178 (207)
                      .+|..+.+.++.
T Consensus       317 ~vF~~v~~~Il~  328 (340)
T 4fid_A          317 RVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999886

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.75  E-value=1.5e-19  Score=141.64  Aligned_cols=159  Identities=18%  Similarity=0.092  Sum_probs=103.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcc------ccCce-----------------e---eeee--------------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD------YIPTV-----------------F---DNFS--------------   43 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~------~~~t~-----------------~---~~~~--------------   43 (207)
                      ..+|+++|.+++| ||||+|+|++..+.+.      ..|+.                 |   .++.              
T Consensus        26 ~~~i~vvG~~~~G-KSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           26 LPQIAVVGGQSAG-KSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCEEEEEEBTTSC-HHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEeCCCCC-HHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            4699999999999 9999999999886422      22320                 0   0000              


Q ss_pred             ----------eEEEECC-eEEEEEEEeCCCCc-------------cccccccceecCCcEEE-EEEeCCChhhHHHHHHH
Q 028595           44 ----------ANVVAEG-TTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFV-LAFSLVSRASYENVLKK   98 (207)
Q Consensus        44 ----------~~~~~~~-~~~~l~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~   98 (207)
                                ..+.+.+ ....+.+|||||..             .+..+...|++.++.++ +|+|.++..+..+. ..
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~  183 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence                      0000000 12578999999964             23455667888888776 79999886555443 34


Q ss_pred             HHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH--hCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595           99 WIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus        99 ~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      ++..+..  .+.|+++|+||+|+.+....          ..+.++.....  .+..+++++||++|.|++++|+.+.+..
T Consensus       184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          184 IAKEVDP--QGQRTIGVITKLDLMDEGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHCT--TCSSEEEEEECGGGSCTTCC----------CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHhCC--CCCeEEEEEEccccCCCCch----------HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            5555543  37899999999999765431          22222210001  1334678899999999999999988743

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.75  E-value=3.9e-19  Score=146.29  Aligned_cols=157  Identities=14%  Similarity=0.049  Sum_probs=104.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCC--CCCccc-----------------------------cCceeeeeeeEEEECCeE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR--SSIWDY-----------------------------IPTVFDNFSANVVAEGTT   52 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~   52 (207)
                      ..+|+++|..++| ||||+++|+..  .+...+                             .+.++.... ...++...
T Consensus         6 ~~~I~iiG~~~~G-KSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~-~~~~~~~~   83 (435)
T 1jny_A            6 HLNLIVIGHVDHG-KSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT-FMRFETKK   83 (435)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEECSS
T ss_pred             EEEEEEEeCCCCC-HHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee-EEEEecCC
Confidence            4799999999999 99999999864  222111                             011111111 11223334


Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHH------HHHHHHHhhcCCCCcEEEEeeCCCcccCc-
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL------KKWIPELQHYSPGVPVVLVGTKLDLREDK-  125 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~------~~~~~~i~~~~~~~piivv~nK~D~~~~~-  125 (207)
                      +.+.+|||||+++|......++..+|++|+|+|+++ .+++...      ..++..+... .-.|+++++||+|+.+.. 
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTT
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCCccc
Confidence            679999999999998888889999999999999999 6666431      1222222221 124699999999997631 


Q ss_pred             -ccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHHHHH
Q 028595          126 -HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVFD  170 (207)
Q Consensus       126 -~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f~  170 (207)
                       +.      ......++++.+++.+++    .+++++||++|.|+.+++.
T Consensus       162 ~~~------~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEK------RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHH------HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHH------HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence             10      000134677888888773    4799999999999986543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.74  E-value=6.1e-19  Score=156.56  Aligned_cols=165  Identities=13%  Similarity=0.062  Sum_probs=112.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC-------CCc-------cccCceeeeee-eEEEECCeEEEEEEEeCCCCccccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS-------SIW-------DYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNR   68 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~-------~~~-------~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~   68 (207)
                      ..+|+++|..++| ||||+++|++..       +..       ....+.|.++. ..+.++.....+.||||||+++|..
T Consensus       296 ~lnIvIIGhvDvG-KSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~  374 (1289)
T 3avx_A          296 HVNVGTIGHVDHG-KTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK  374 (1289)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred             eeEEEEEcCCCCC-HHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence            4789999999999 999999998631       000       00122232221 1233444457789999999999988


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                      ....++..+|++|+|+|+++....+..  .++..+...  ++| +++++||+|+.+.....       ....++++.+++
T Consensus       375 ~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~l-------e~i~eEi~elLk  443 (1289)
T 3avx_A          375 NMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEELL-------ELVEMEVRELLS  443 (1289)
T ss_dssp             HHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhhH-------HHHHHHHHHHHH
Confidence            878889999999999999986444432  333444332  688 89999999997533210       013356778888


Q ss_pred             HhCC----cEEEEeccCCC--------CCHHHHHHHHHHHHhCCC
Q 028595          148 QIGA----SYYIECSSKTQ--------QNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       148 ~~~~----~~~~e~Sa~~~--------~~i~~~f~~i~~~~~~~~  180 (207)
                      .+++    .+++++||++|        .|+.++++.+.+.+..+.
T Consensus       444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~  488 (1289)
T 3avx_A          444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE  488 (1289)
T ss_dssp             HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCC
T ss_pred             hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCc
Confidence            8774    48999999999        468999999888776443

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.1e-18  Score=148.65  Aligned_cols=156  Identities=11%  Similarity=-0.003  Sum_probs=100.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcccc---------C--------------------ceeeee-eeEEEECCeEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYI---------P--------------------TVFDNF-SANVVAEGTTV   53 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~---------~--------------------t~~~~~-~~~~~~~~~~~   53 (207)
                      .+||+++|..++| ||||+++|++........         .                    ..|.+. .....++...+
T Consensus       167 ~lkV~ivG~~n~G-KSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~  245 (611)
T 3izq_1          167 HLSFVVLGHVDAG-KSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  245 (611)
T ss_dssp             CCEEEEECCSSSC-HHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred             ceEEEEEECCCCC-HHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence            5799999999999 999999998663211100         0                    011111 11112222346


Q ss_pred             EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhH------HHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595           54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY------ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  127 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~  127 (207)
                      .+.||||||+++|......++..+|++|+|+|+++....      ... ...+..+... .-.|+++|+||+|+.+....
T Consensus       246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~l-gi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHTT-TCCEEEEEEECTTTTTTCHH
T ss_pred             eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHHc-CCCeEEEEEecccccchhHH
Confidence            789999999999998888999999999999999874210      011 1122222221 23459999999999763221


Q ss_pred             ccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHHH
Q 028595          128 LADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV  168 (207)
Q Consensus       128 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~  168 (207)
                            ......+++..++..+++    .+++++||++|.|+.++
T Consensus       324 ------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             ------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             ------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence                  000023455566666654    38999999999999876

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.73  E-value=4.8e-18  Score=146.23  Aligned_cols=115  Identities=17%  Similarity=0.081  Sum_probs=81.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCc-------------cccC---ceeeee-eeEEEECCeEEEEEEEeCCCCcc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIW-------------DYIP---TVFDNF-SANVVAEGTTVNLGLWDTAGQED   65 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~-------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~   65 (207)
                      ...+|+++|..++| ||||+++|++.....             ++.+   ..+..+ .....+....+.++||||||++.
T Consensus         8 ~~~~i~IiG~~gaG-KTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            8 MIRTVALVGHAGSG-KTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CEEEEEEEESTTSS-HHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCcEEEEECCCCCh-HHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            45789999999999 999999998332110             1110   001122 22233333357899999999999


Q ss_pred             ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      +...+..+++.+|++++|+|.++....+..  .++..+..  .++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHH--ccCCEEEEecCCchh
Confidence            988888999999999999999886555543  44444444  379999999999986

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.72  E-value=4.9e-19  Score=139.00  Aligned_cols=163  Identities=10%  Similarity=-0.005  Sum_probs=88.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCC-CCCccc--------cCceeeee-eeEEEECCeEEEEEEEeCCCC-------cc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGR-SSIWDY--------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQ-------ED   65 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~-~~~~~~--------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~-------~~   65 (207)
                      ..++|+++|.+++| ||||++++.+. .+...+        .++..... ...+..++....+.+||++|+       +.
T Consensus        17 ~~~~I~lvG~nG~G-KSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           17 FEFTLMVVGESGLG-KSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             -CEEEEEEEETTSS-HHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCEEEEEECCCCCC-HHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45799999999999 99999998875 333332        12222111 112222445678999999998       55


Q ss_pred             cccccc-------ceecC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595           66 YNRLRP-------LSYRG-------------ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        66 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~  125 (207)
                      +..+..       .++..             +++++++.+.+. .+++.....+   +....++.|+++|+||.|+...+
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~---l~~l~~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAF---MKAIHNKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHH---HHHHTTTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHH---HHHHHhcCCEEEEEEeCCCCCHH
Confidence            555443       34332             233444444322 2333331123   33333578999999999997543


Q ss_pred             ccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          126 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +.        .+..++++++++.+++ +++++||+++ |++++|..+++.+....
T Consensus       172 e~--------~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          172 ER--------ERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HH--------HHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTTC
T ss_pred             HH--------HHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            31        1135688899999998 9999999999 99999999999987543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.72  E-value=6.8e-18  Score=139.64  Aligned_cols=151  Identities=11%  Similarity=-0.025  Sum_probs=102.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCC--CCCcc-------------------------------ccCceeeeeeeEEEECC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR--SSIWD-------------------------------YIPTVFDNFSANVVAEG   50 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~   50 (207)
                      ..+|+++|..++| ||||+++|++.  .+...                               .-.|+...+   ..++.
T Consensus         7 ~~~i~iiG~~~~G-KSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~---~~~~~   82 (458)
T 1f60_A            7 HINVVVIGHVDSG-KSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL---WKFET   82 (458)
T ss_dssp             EEEEEEEECTTSC-HHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC---EEEEC
T ss_pred             eeEEEEEcCCCCC-HHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE---EEEec
Confidence            5799999999999 99999999854  22110                               001211111   12233


Q ss_pred             eEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh---H----HHHHHHHHHHHhhcCCCCc-EEEEeeCCCcc
Q 028595           51 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y----ENVLKKWIPELQHYSPGVP-VVLVGTKLDLR  122 (207)
Q Consensus        51 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~  122 (207)
                      ....+.+|||||+++|......++..+|++|+|+|+++...   |    +..  .++..+..  .++| +++++||+|+.
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~--~~~~~~~~--~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR--EHALLAFT--LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH--HHHHHHHH--TTCCEEEEEEECGGGG
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH--HHHHHHHH--cCCCeEEEEEEccccc
Confidence            34679999999999998888888999999999999998632   2    222  22223322  2565 99999999997


Q ss_pred             cCcccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHHH
Q 028595          123 EDKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV  168 (207)
Q Consensus       123 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~  168 (207)
                      +....      ......++++.+++.+++    .+++++||++|.|+.++
T Consensus       159 ~~~~~------~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          159 KWDES------RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TTCHH------HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cCCHH------HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            42110      000134567777787774    48999999999998743

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.72  E-value=1.5e-18  Score=143.85  Aligned_cols=153  Identities=18%  Similarity=0.067  Sum_probs=89.6

Q ss_pred             ceeEEEEecccccceeeeeeeccC--CCCCc-------------------------------cccCceeeeeeeEEEECC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG--RSSIW-------------------------------DYIPTVFDNFSANVVAEG   50 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~~   50 (207)
                      ..+|+++|..++| ||||+++|+.  +.+..                               ..-.|+...+ ..+..++
T Consensus        43 ~~~i~iiG~vd~G-KSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~-~~~~~~~  120 (467)
T 1r5b_A           43 HVNIVFIGHVDAG-KSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR-AYFETEH  120 (467)
T ss_dssp             EEEEEEEECGGGT-HHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C-CEEECSS
T ss_pred             eeEEEEEECCCCC-HHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee-EEEecCC
Confidence            4689999999999 9999999864  22210                               0011211111 1222333


Q ss_pred             eEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChh---hHHHH--HHHHHHHHhhcCCCCc-EEEEeeCCCcccC
Q 028595           51 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVP-VVLVGTKLDLRED  124 (207)
Q Consensus        51 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~~i~~~~~~~p-iivv~nK~D~~~~  124 (207)
                        ..+.||||||+++|......++..+|++|+|+|+++..   +|+..  ....+..+..  .++| +++++||+|+.+.
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~  196 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSV  196 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTC
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCc
Confidence              67899999999999988888899999999999999863   22111  0111222222  3677 9999999999642


Q ss_pred             c---ccccCCCCCcccCHHHHHHHHHHh-CC-----cEEEEeccCCCCCHHHHH
Q 028595          125 K---HYLADHPGLVPVTTAQGEELRKQI-GA-----SYYIECSSKTQQNVKAVF  169 (207)
Q Consensus       125 ~---~~~~~~~~~~~v~~~~~~~~~~~~-~~-----~~~~e~Sa~~~~~i~~~f  169 (207)
                      .   ..       .....+++..++..+ ++     .+++++||++|.|+.++|
T Consensus       197 ~~~~~~-------~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          197 QWSEER-------YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SSCHHH-------HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cccHHH-------HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            1   10       001334677777776 53     369999999999998765

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.70  E-value=1.9e-17  Score=127.60  Aligned_cols=117  Identities=15%  Similarity=0.075  Sum_probs=83.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceec------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR------   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~------   75 (207)
                      .++|+++|..++| ||||+|+|++...  ...+.++........+..++  ..+.||||||++.+......+++      
T Consensus        36 ~~~I~lvG~~g~G-KSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           36 SMTVLVLGKGGVG-KSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             EEEEEEEECTTSS-HHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            5799999999999 9999999998874  33344443333344555566  47899999999988776665554      


Q ss_pred             ---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C--CCcEEEEeeCCCcccC
Q 028595           76 ---GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLRED  124 (207)
Q Consensus        76 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~--~~piivv~nK~D~~~~  124 (207)
                         ++|++++|+++++.. +......|+..+.... +  ..|+++|+||+|+.+.
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence               789999999987654 3332235666665433 2  2499999999998644

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.70  E-value=9.1e-17  Score=130.79  Aligned_cols=160  Identities=14%  Similarity=0.086  Sum_probs=111.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----ccccccce---ecC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLS---YRG   76 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~~---~~~   76 (207)
                      ..|+++|.+++| ||||++++++.... ..+..|........+..++ ...+.+||+||...    +..+...+   ...
T Consensus       158 ~~VgLVG~~gAG-KSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er  235 (416)
T 1udx_A          158 ADVGLVGYPNAG-KSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR  235 (416)
T ss_dssp             CSEEEECCGGGC-HHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred             CEEEEECCCCCc-HHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence            468999999999 99999999877431 2222221111122333343 24578999999743    22333333   346


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           77 ADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        77 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      ++.++.++|++ ...+.++ ..+..++..+.   ...|.++++||.|+... .           ..++..++++..+. +
T Consensus       236 a~~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~  300 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-A  300 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-C
T ss_pred             HHhhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-e
Confidence            99999999998 5666666 56666655544   26899999999998654 2           34555566666676 8


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ++.+||++++|++++++++.+.+...+.
T Consensus       301 vi~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          301 VLPVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             EEEEECCCccCHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999986654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.70  E-value=3.7e-17  Score=137.12  Aligned_cols=117  Identities=13%  Similarity=0.030  Sum_probs=79.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC--CCc---------------c---ccCceeeee-eeEEEECCeEEEEEEEeCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS--SIW---------------D---YIPTVFDNF-SANVVAEGTTVNLGLWDTA   61 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~~~---------------~---~~~t~~~~~-~~~~~~~~~~~~l~i~D~~   61 (207)
                      ...+|+++|..++| ||||+++|+...  +..               +   ..++.|.+. .....++...+.+.|||||
T Consensus        12 ~~~~I~IiG~~~aG-KTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           12 KRRTFAIISHPDAG-KTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             TEEEEEEEECTTSS-HHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             CCCEEEEECCCCCh-HHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            46799999999999 999999998531  100               0   001112111 1122222234789999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      |++.|......+++.+|++|+|+|+++....+.  ..++..+..  .++|+++++||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence            999998888889999999999999998654433  233444433  37999999999998653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.69  E-value=1.7e-17  Score=135.17  Aligned_cols=160  Identities=11%  Similarity=0.020  Sum_probs=88.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCC-ccc-------cCceeeee-eeEEEECCeEEEEEEEeCCCCcccc------
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSI-WDY-------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------   67 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~-------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~------   67 (207)
                      +.++|+++|.+++| ||||+++|++..+. ..+       .+|.+... ...+..++....+.+||++|...+.      
T Consensus        30 vsf~I~lvG~sGaG-KSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           30 FEFTLMVVGESGLG-KSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCEEEEEECCTTSS-HHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCEEEEEECCCCCc-HHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            35789999999999 99999999987653 211       22332211 1122223444689999999976531      


Q ss_pred             -c------------------cccceecCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595           68 -R------------------LRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  127 (207)
Q Consensus        68 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~  127 (207)
                       .                  +.+.++.++++.+++|..+.. .++......|+..+.   .++|+++|+||+|+...+++
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev  185 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEEC  185 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHH
Confidence             1                  234456677776677766654 355554235666664   37999999999998765442


Q ss_pred             ccCCCCCcccCH--HHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          128 LADHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       128 ~~~~~~~~~v~~--~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                                ..  +.+..++..+++ +++++|+.++.+++++|..+...++
T Consensus       186 ----------~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          186 ----------QQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             ----------HHHHHHHHHHHHHHTC-CCCCCC-----------------CC
T ss_pred             ----------HHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhCC
Confidence                      33  678888888988 8999999999999999988887664

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.69  E-value=3e-18  Score=145.54  Aligned_cols=148  Identities=16%  Similarity=0.062  Sum_probs=82.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC--CC-----------------------------ccccCceeeeeeeEEEECCeE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS--SI-----------------------------WDYIPTVFDNFSANVVAEGTT   52 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~   52 (207)
                      ..+|+++|..++| ||||+++|+...  +.                             .+..+.++... ....+....
T Consensus       177 ~~~I~iiG~~d~G-KSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~-~~~~~~~~~  254 (592)
T 3mca_A          177 VVHLVVTGHVDSG-KSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDV-ASTTFESDK  254 (592)
T ss_dssp             EEEEEEECCSSST-HHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred             ccEEEEEcCCCCC-HHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEe-eEEEEEeCC
Confidence            4689999999999 999999996321  00                             00011111111 111122234


Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCc
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYSPGVP-VVLVGTKLDL  121 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~  121 (207)
                      ..+.||||||++.|......++..+|++|+|+|+++.          .+.+.+     ..+...  ++| +++|+||+|+
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-----~~~~~l--gip~iIvviNKiDl  327 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-----YLLRAL--GISEIVVSVNKLDL  327 (592)
T ss_dssp             ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-----HHHHHS--SCCCEEEEEECGGG
T ss_pred             eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-----HHHHHc--CCCeEEEEEecccc
Confidence            6789999999999998888999999999999999853          333332     222221  565 9999999999


Q ss_pred             ccCcccccCCCCCcccCHHHHHHHH-HHhCC----cEEEEeccCCCCCHH
Q 028595          122 REDKHYLADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVK  166 (207)
Q Consensus       122 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~----~~~~e~Sa~~~~~i~  166 (207)
                      .+....      ......+++..+. ..+++    .+++++||++|.|+.
T Consensus       328 ~~~~~~------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          328 MSWSED------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GTTCHH------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccccHH------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            752210      0000223444454 44555    279999999999998

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.67  E-value=4.6e-17  Score=140.68  Aligned_cols=172  Identities=12%  Similarity=0.095  Sum_probs=108.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc-cccCcee--------eeeeeEEEE-CCe----------------------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVF--------DNFSANVVA-EGT----------------------   51 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~--------~~~~~~~~~-~~~----------------------   51 (207)
                      .++|+++|.+++| ||||+|+|++..+.+ ...|++.        ......... ++.                      
T Consensus        69 ~~~V~VvG~~naG-KSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           69 VFRLLVLGDMKRG-KSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CEEEEEECCTTSC-HHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            5799999999999 999999999887543 2333331        000001110 100                      


Q ss_pred             -----------------------E--EEEEEEeCCCCcc---ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028595           52 -----------------------T--VNLGLWDTAGQED---YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL  103 (207)
Q Consensus        52 -----------------------~--~~l~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i  103 (207)
                                             .  ..+.||||||...   .......+++++|++++|+|.++..+..+. ..|...+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence                                   0  3588999999554   334566788999999999999998888776 5565555


Q ss_pred             hhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhC-------CcEEEEeccC-----------
Q 028595          104 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIG-------ASYYIECSSK-----------  160 (207)
Q Consensus       104 ~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~-------~~~~~e~Sa~-----------  160 (207)
                      ...  +.|+++|+||+|+........+.........+....     +....+       ..+++++||+           
T Consensus       227 ~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          227 KGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             TTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             Hhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            432  678999999999865431100000000000001111     111111       1268999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHhCC
Q 028595          161 ---TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ---~~~~i~~~f~~i~~~~~~~  179 (207)
                         ++.|+++++..+.+.+...
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHHT
T ss_pred             hhhhccCHHHHHHHHHHHHHHh
Confidence               9999999999998877644

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.67  E-value=8.2e-17  Score=139.08  Aligned_cols=115  Identities=13%  Similarity=0.063  Sum_probs=82.5

Q ss_pred             ccceeEEEEecccccceeeeeeeccCC--CC------Cc------------cccCceeeeeeeEEEECCeEEEEEEEeCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGR--SS------IW------------DYIPTVFDNFSANVVAEGTTVNLGLWDTA   61 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~--~~------~~------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~   61 (207)
                      +...+|+++|..++| ||||+++|+..  .+      ..            ...+|+... ...+..+  .+.++|||||
T Consensus        10 ~~~~~I~IvG~~~aG-KTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTP   85 (691)
T 1dar_A           10 KRLRNIGIAAHIDAG-KTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTP   85 (691)
T ss_dssp             GGEEEEEEEECTTSC-HHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCC
T ss_pred             ccccEEEEECCCCCC-HHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECc
Confidence            346799999999999 99999999831  11      00            111222211 1122333  4789999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      |+..+...+..+++.+|++|+|+|.++..+.+.. ..|.. +..  .++|+++++||+|+...
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEK--YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTC
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHH--cCCCEEEEEECCCcccC
Confidence            9999998899999999999999999998887776 45543 333  28999999999998753

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.66  E-value=7.7e-18  Score=135.45  Aligned_cols=154  Identities=16%  Similarity=0.111  Sum_probs=102.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeee------------------e-----------------------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDN------------------F-----------------------   42 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~------------------~-----------------------   42 (207)
                      ...|+++|.+++| ||||+|+|++..+.+....+++..                  +                       
T Consensus        34 lp~I~vvG~~~sG-KSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           34 LPAIAVVGGQSSG-KSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCEEEEECBTTSS-HHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCc-HHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            3489999999999 999999999987643332222100                  0                       


Q ss_pred             ------------eeEEEE-CCeEEEEEEEeCCCCccc-------------cccccceecCCcEEEEEEeCCChhhHHHHH
Q 028595           43 ------------SANVVA-EGTTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLVSRASYENVL   96 (207)
Q Consensus        43 ------------~~~~~~-~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~   96 (207)
                                  ...+.+ ......+.+|||||...+             ..+...|+.++|++|+|+|..+.+....  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence                        000111 011235889999998776             5566788999999999998765443321  


Q ss_pred             HHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHH
Q 028595           97 KKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA  172 (207)
Q Consensus        97 ~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  172 (207)
                       .|+..+.... .+.|+++|+||+|+.+....          ..+.++.+...++. +|+++|+.++.++++.+...
T Consensus       191 -~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          191 -DAIKISREVDPSGDRTFGVLTKIDLMDKGTD----------AVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             -HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC----------SHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred             -HHHHHHHHhcccCCCEEEEEeCCccCCCccc----------HHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence             2333333333 36899999999999765542          44555555555666 89999999988888765543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.65  E-value=9.7e-17  Score=124.13  Aligned_cols=118  Identities=13%  Similarity=0.039  Sum_probs=79.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccc-------e-
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL-------S-   73 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~-------~-   73 (207)
                      .++|+++|..++| ||||+|+|++..+.  ..+.++........+..+  ...+.+|||||++.+......       + 
T Consensus        39 ~~~I~vvG~~g~G-KSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           39 SLTILVMGKGGVG-KSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCC-HHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            5799999999999 99999999988753  222233222222233333  467899999999876544332       1 


Q ss_pred             -ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC--CcEEEEeeCCCcccCc
Q 028595           74 -YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PG--VPVVLVGTKLDLREDK  125 (207)
Q Consensus        74 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~--~piivv~nK~D~~~~~  125 (207)
                       ...+|++++|+|++.. ++......|+..+.... .+  .|+++|+||+|+.+.+
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence             2368999999998753 33333246666665442 22  7999999999987544

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.65  E-value=6.5e-17  Score=127.58  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=72.2

Q ss_pred             EEEEEEeCCCCcc-------------ccccccceecCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCcEEEEeeC
Q 028595           53 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLVSRASY-ENVLKKWIPELQHYSPGVPVVLVGTK  118 (207)
Q Consensus        53 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~i~~~~~~~piivv~nK  118 (207)
                      ..+.+|||||...             +......++.++|++++|+|.++.... ... ..+...+..  .+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcC
Confidence            4689999999753             344566788999999999997543211 111 133444433  37899999999


Q ss_pred             CCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC---C---CCCHHHHHHHHHHHHhCCC
Q 028595          119 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK---T---QQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       119 ~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~---~---~~~i~~~f~~i~~~~~~~~  180 (207)
                      +|+.+....          ..+.++.....++. .|+++|+.   +   +.|+.++++.+.+.+...+
T Consensus       208 ~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~  264 (315)
T 1jwy_B          208 LDLMDKGTD----------AMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP  264 (315)
T ss_dssp             TTSSCSSCC----------CHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred             cccCCcchH----------HHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence            999755431          22222211111123 56666555   4   7899999999988887654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.65  E-value=1e-15  Score=132.43  Aligned_cols=117  Identities=14%  Similarity=0.060  Sum_probs=83.0

Q ss_pred             ccceeEEEEecccccceeeeeeeccCC--CCCc-----------cc-------cCceeeeeeeEEEE-----CCeEEEEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGR--SSIW-----------DY-------IPTVFDNFSANVVA-----EGTTVNLG   56 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~--~~~~-----------~~-------~~t~~~~~~~~~~~-----~~~~~~l~   56 (207)
                      +...+|+++|..++| ||||+++|+..  .+..           ++       ..|+.... ..+..     ++..+.++
T Consensus         8 ~~~~~I~IiG~~~~G-KTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            8 ARYRNIGISAHIDAG-KTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA-TTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             ccccEEEEECCCCCC-HHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece-EEEEECCccccCCceeEE
Confidence            346799999999999 99999999742  1110           00       11221111 11222     23458999


Q ss_pred             EEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           57 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        57 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      ||||||+.+|...+..+++.+|++|+|+|+++....+.. ..|. .+..  .++|+++++||+|+...
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~-~~~~--~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWR-QANK--YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHH-HHHH--cCCCEEEEEeCCCcccc
Confidence            999999999988889999999999999999987666654 3443 3332  37999999999998653

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.63  E-value=6e-16  Score=133.75  Aligned_cols=115  Identities=17%  Similarity=0.123  Sum_probs=82.7

Q ss_pred             ccceeEEEEecccccceeeeeeeccC--CCCCc-----------cc-------cCceeeeeeeEEEECCeEEEEEEEeCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSG--RSSIW-----------DY-------IPTVFDNFSANVVAEGTTVNLGLWDTA   61 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~--~~~~~-----------~~-------~~t~~~~~~~~~~~~~~~~~l~i~D~~   61 (207)
                      +...+|+++|..++| ||||+++|+.  +.+..           ++       ..|+... ...+..++  +.+.|||||
T Consensus         8 ~~~~~I~IvG~~~aG-KSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTP   83 (693)
T 2xex_A            8 EKTRNIGIMAHIDAG-KTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA-ATTAAWEG--HRVNIIDTP   83 (693)
T ss_dssp             TTEEEEEEECCGGGT-HHHHHHHHHHHHSSCC-------------------------CCS-EEEEEETT--EEEEEECCC
T ss_pred             ccceEEEEECCCCCC-HHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee-eEEEEECC--eeEEEEECc
Confidence            346799999999999 9999999984  22110           00       0111111 11233343  778999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      |+..+...+..+++.+|++|+|+|+++..+.+.. ..|. .+..  .++|+++++||+|+...
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~--~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATT--YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHH--TTCCEEEEEECTTSTTC
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHH--cCCCEEEEEECCCcccc
Confidence            9999988888999999999999999998777765 4444 3433  27999999999998753

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.62  E-value=2.7e-16  Score=127.63  Aligned_cols=84  Identities=12%  Similarity=0.083  Sum_probs=48.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-cccc-----Cceeeeeee-E---------------EEECC-eEEEEEEEeCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYI-----PTVFDNFSA-N---------------VVAEG-TTVNLGLWDTA   61 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~-----~t~~~~~~~-~---------------~~~~~-~~~~l~i~D~~   61 (207)
                      +||+++|.+++| ||||+|+|++.... ..+.     |+.+..+.. .               ..+++ ..+.+.+||||
T Consensus         1 ~kI~ivG~pnvG-KSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVG-KSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSS-HHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCC-HHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            489999999999 99999999988732 1222     222211100 0               11233 25789999999


Q ss_pred             CCcc----cccccc---ceecCCcEEEEEEeCCCh
Q 028595           62 GQED----YNRLRP---LSYRGADVFVLAFSLVSR   89 (207)
Q Consensus        62 G~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   89 (207)
                      |...    .+.+..   .+++++|++++|+|+++.
T Consensus        80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            9753    333333   456899999999999875

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.59  E-value=4.6e-17  Score=122.46  Aligned_cols=152  Identities=15%  Similarity=0.042  Sum_probs=93.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-------------eEEEEC-CeEE----------------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-------------ANVVAE-GTTV----------------   53 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~~~----------------   53 (207)
                      ..+|+++|.+++| ||||+++|+...+...+.++++.++.             ..+.++ +..+                
T Consensus        38 ~~~i~ivG~~gvG-KTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           38 VVAFDFMGAIGSG-KTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             CEEEEEEESTTSS-HHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CeEEEEEcCCCCC-HHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            5799999999999 99999999977655555566654443             222222 2112                


Q ss_pred             ---EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC
Q 028595           54 ---NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  130 (207)
Q Consensus        54 ---~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~  130 (207)
                         .+.++|++|.-...   ..+-...+..+.+.|..+......   .+...+     ..|.++|+||+|+.+....   
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~~~---  182 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADAVGA---  182 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHHHTC---
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCchhHH---
Confidence               23444444421000   001112344566666432211111   111112     5788999999999764332   


Q ss_pred             CCCCcccCHHHHHHHHHHhC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          131 HPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       131 ~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                             ..+++..+++.++ ..+++++||++|.|++++|+.+.+.+.
T Consensus       183 -------~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          183 -------DIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             -------CHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence                   5677777777653 238999999999999999999988764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.59  E-value=8.3e-16  Score=115.14  Aligned_cols=154  Identities=15%  Similarity=0.021  Sum_probs=96.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee------------e-eEEEECC------------------eE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF------------S-ANVVAEG------------------TT   52 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~------------~-~~~~~~~------------------~~   52 (207)
                      ..+|+++|.+++| ||||+++|+..........++..++            . ..+.++.                  ..
T Consensus        30 ~~~i~i~G~~g~G-KTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           30 TVAVNIMGAIGSG-KTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             CEEEEEEECTTSC-HHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             ceEEEEEcCCCCC-HHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            4689999999999 9999999986521111111111000            0 0111111                  23


Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  132 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~  132 (207)
                      +.+.+|||+|+-....   .+....+.+++|+|+++.....   ..+...+     +.|+++|+||+|+.+....     
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~---~~~~~~~-----~~~~iiv~NK~Dl~~~~~~-----  172 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV---EKHPEIF-----RVADLIVINKVALAEAVGA-----  172 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH---HHCHHHH-----HTCSEEEEECGGGHHHHTC-----
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh---hhhhhhh-----hcCCEEEEecccCCcchhh-----
Confidence            5678999998511111   1112568899999988754321   1222222     5789999999998654321     


Q ss_pred             CCcccCHHHHHHHHHHhC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          133 GLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       133 ~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                           ..+++..+++.++ ..+++++||++|.|++++|+++.+.+...
T Consensus       173 -----~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          173 -----DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             -----CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             -----HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence                 5566666666654 24899999999999999999999887654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.59  E-value=4e-14  Score=111.05  Aligned_cols=132  Identities=15%  Similarity=0.049  Sum_probs=96.2

Q ss_pred             eeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChh-hHHHHHHHHHH
Q 028595           23 LSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIP  101 (207)
Q Consensus        23 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~  101 (207)
                      .+...+.+.....|++|+........++..+-   .  ..++++..+.+.+++++|++++|+|+++++ ++..+ ..|+.
T Consensus        31 ~~~~~~~~~~~~~~~vGD~V~~~~~~~~~g~I---~--~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~  104 (302)
T 2yv5_A           31 RGIPRGKVLKKTKIYAGDYVWGEVVDPNTFAI---E--EVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLV  104 (302)
T ss_dssp             EEEECSSSTTSSCCCBTCEEEEEEEETTEEEE---E--EECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHH
T ss_pred             EEEEcCCcccCCCCcCceEEEEEEccCCeEEE---E--eeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHH
Confidence            33344444333337777665444333332221   1  137888899999999999999999999986 88776 78888


Q ss_pred             HHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccC-HHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHH
Q 028595          102 ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT-TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI  173 (207)
Q Consensus       102 ~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  173 (207)
                      .+..  .++|+++|+||+|+.+...+          . .+++.++++.+++ +++++||++|.|++++|..+.
T Consensus       105 ~~~~--~~~~~ilV~NK~DL~~~~~v----------~~~~~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          105 VYEY--FKVEPVIVFNKIDLLNEEEK----------KELERWISIYRDAGY-DVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHH--TTCEEEEEECCGGGCCHHHH----------HHHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHh--CCCCEEEEEEcccCCCcccc----------HHHHHHHHHHHHCCC-eEEEEECCCCCCHHHHHhhcc
Confidence            7765  48999999999999754321          2 4566777777888 999999999999999998764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.59  E-value=2.3e-17  Score=132.29  Aligned_cols=157  Identities=20%  Similarity=0.141  Sum_probs=94.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccc------cCcee--------------------eee---------------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDY------IPTVF--------------------DNF---------------   42 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~------~~t~~--------------------~~~---------------   42 (207)
                      ..+|+++|.+++| ||||+|+|++..+.+..      .|+..                    .++               
T Consensus        31 ~~~I~vvG~~~~G-KSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           31 LPQIAVVGGQSAG-KSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCEEEEECBTTSS-HHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCC-HHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4689999999999 99999999998864221      13210                    000               


Q ss_pred             ---------eeEEEECC-eEEEEEEEeCCCCc-------------cccccccceecCCcEEEE-EEeCCChhhHHHHHHH
Q 028595           43 ---------SANVVAEG-TTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFVL-AFSLVSRASYENVLKK   98 (207)
Q Consensus        43 ---------~~~~~~~~-~~~~l~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~   98 (207)
                               ...+.+.+ ....+.||||||..             .+..+...|+.+++.+|+ |.|.+....-.+. ..
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence                     00011111 13568999999953             234456677766655555 5555542222222 23


Q ss_pred             HHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH--HHHHhCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595           99 WIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus        99 ~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      ++..+..  .+.|+++|+||+|+.+....          ..+..+.  +....++.+++++||+++.|++++++.+.+
T Consensus       189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~----------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDP--QGQRTIGVITKLDLMDEGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCT--TCTTEEEEEECGGGSCTTCC----------CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCc--CCCceEEEeccccccCcchh----------HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            4444432  37899999999999754321          1111110  111123345678999999999999999876

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.53  E-value=8.5e-14  Score=111.16  Aligned_cols=82  Identities=15%  Similarity=0.009  Sum_probs=56.4

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCc-cccC-ceeeeeeeEEEECCe---------------EEEEEEEeCCCCcccc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIW-DYIP-TVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDYN   67 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~   67 (207)
                      .+|+++|.+++| ||||+|+|++..... .+.. |+... ...+.+++.               ...+.+|||||+..+.
T Consensus         3 ~kI~IVG~pnvG-KSTL~n~Lt~~~~~v~~~p~tTi~p~-~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVG-KSTLFNALTKAGIEAANYPFCTIEPN-TGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHHHTC------CCCCCCCC-SSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCC-HHHHHHHHHCCCCcccCCCCceECce-EEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            589999999999 999999999876422 2221 32222 123444442               2578999999988653


Q ss_pred             ----ccccc---eecCCcEEEEEEeCCC
Q 028595           68 ----RLRPL---SYRGADVFVLAFSLVS   88 (207)
Q Consensus        68 ----~~~~~---~~~~~d~~i~v~d~~~   88 (207)
                          .+...   +++++|++++|+|+++
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                34443   4789999999999986

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.52  E-value=7.4e-15  Score=129.34  Aligned_cols=116  Identities=14%  Similarity=0.074  Sum_probs=85.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC------------CCc----cc--cCceeeee-eeEEE------------ECCe
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS------------SIW----DY--IPTVFDNF-SANVV------------AEGT   51 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~------------~~~----~~--~~t~~~~~-~~~~~------------~~~~   51 (207)
                      ...||+++|..++| ||||+++|+...            +.+    +.  ..|+.... ...+.            .++.
T Consensus        18 ~~rnI~IiG~~~~G-KTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           18 NVRNMSVIAHVDHG-KSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GEEEEEEECCGGGT-HHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             cccEEEEECCCCCC-HHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            35799999999999 999999998541            110    00  11222111 11222            2455


Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      .+.++||||||+.+|...+..+++.+|++|+|+|+++..+++.. ..|.....   .++|+++++||+|+..
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence            78999999999999999999999999999999999998888876 55554433   3799999999999863

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.47  E-value=2.2e-14  Score=120.99  Aligned_cols=118  Identities=13%  Similarity=0.049  Sum_probs=79.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCC---ccccCceeeeeee------EEEECCe-----------------------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSI---WDYIPTVFDNFSA------NVVAEGT-----------------------   51 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~---~~~~~t~~~~~~~------~~~~~~~-----------------------   51 (207)
                      ..+|+++|..++| ||||+|+|++..+.   ....|+.......      .+..+..                       
T Consensus        65 ~~~V~vvG~~n~G-KSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           65 KPMVLVAGQYSTG-KTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             CCEEEEEEBTTSC-HHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            4689999999999 99999999998863   2233332110000      0000000                       


Q ss_pred             E---------EEEEEEeCCCCcc-----------ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc
Q 028595           52 T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP  111 (207)
Q Consensus        52 ~---------~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p  111 (207)
                      .         ..+.+|||||...           +......++..+|++++|+|+++....... ..|+..+...  +.|
T Consensus       144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~p  220 (550)
T 2qpt_A          144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--EDK  220 (550)
T ss_dssp             EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GGG
T ss_pred             eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CCC
Confidence            0         2588999999764           334455678889999999999886444444 4666666542  689


Q ss_pred             EEEEeeCCCcccCc
Q 028595          112 VVLVGTKLDLREDK  125 (207)
Q Consensus       112 iivv~nK~D~~~~~  125 (207)
                      +++|+||+|+....
T Consensus       221 vilVlNK~Dl~~~~  234 (550)
T 2qpt_A          221 IRVVLNKADMVETQ  234 (550)
T ss_dssp             EEEEEECGGGSCHH
T ss_pred             EEEEEECCCccCHH
Confidence            99999999997543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.45  E-value=1.1e-14  Score=116.74  Aligned_cols=107  Identities=14%  Similarity=0.090  Sum_probs=70.2

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  132 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~  132 (207)
                      +.+.||||||-..   .....+..+|++++|+|.+..+..+.+ .   ..+    .+.|+++|+||+|+.+....     
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~---~~~----~~~p~ivVlNK~Dl~~~~~~-----  235 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K---KGV----LELADIVVVNKADGEHHKEA-----  235 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C---TTS----GGGCSEEEEECCCGGGHHHH-----
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H---HhH----hhcCCEEEEECCCCcChhHH-----
Confidence            6789999999432   122335789999999998776555433 1   111    24689999999998654321     


Q ss_pred             CCcccCHHHHHHHHHHhC------CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          133 GLVPVTTAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       133 ~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                         .....+........+      ..+++++||++|.|++++++++.+.+..
T Consensus       236 ---~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          236 ---RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             ---HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence               001122222222221      1389999999999999999999988753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.43  E-value=1.2e-13  Score=110.79  Aligned_cols=147  Identities=13%  Similarity=0.069  Sum_probs=93.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCCC-Cccc-----cCceeeeeeeEEEECC-------------------eEEEEEEEe
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSS-IWDY-----IPTVFDNFSANVVAEG-------------------TTVNLGLWD   59 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~-~~~~-----~~t~~~~~~~~~~~~~-------------------~~~~l~i~D   59 (207)
                      .+|+++|.+++| ||||+|++++... ...+     .|+.+.     ..+++                   ....+.+||
T Consensus         2 ~~v~IVG~pnvG-KSTL~n~L~~~~~~v~~~p~~Ti~pn~g~-----~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD   75 (368)
T 2dby_A            2 LAVGIVGLPNVG-KSTLFNALTRANALAANYPFATIDKNVGV-----VPLEDERLYALQRTFAKGERVPPVVPTHVEFVD   75 (368)
T ss_dssp             CSEEEECCSSSS-HHHHHHHHHHHHTTCSSCCGGGGSTTEEE-----EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred             cEEEEECCCCCC-HHHHHHHHhCCCCcccCCCCceeccceee-----EecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence            689999999999 9999999987642 1122     233321     12221                   235789999


Q ss_pred             CCCCcccc----cccc---ceecCCcEEEEEEeCCCh----------hhHHHHHHHHH----------------------
Q 028595           60 TAGQEDYN----RLRP---LSYRGADVFVLAFSLVSR----------ASYENVLKKWI----------------------  100 (207)
Q Consensus        60 ~~G~~~~~----~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~----------------------  100 (207)
                      |||.....    .+..   .+++.+|++++|+|+++.          +...++ ..+.                      
T Consensus        76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~-~~i~~EL~~~d~~~l~k~~~~~~~~~  154 (368)
T 2dby_A           76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDA-EVVETELLLADLATLERRLERLRKEA  154 (368)
T ss_dssp             CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHH-HHHhhHHHHccHHHHHHHHHHHHhhh
Confidence            99987653    2333   347899999999999862          122211 1100                      


Q ss_pred             -----------------HHHhh-------------------cC--CCCcEEEEeeCCCcc--cC-cccccCCCCCcccCH
Q 028595          101 -----------------PELQH-------------------YS--PGVPVVLVGTKLDLR--ED-KHYLADHPGLVPVTT  139 (207)
Q Consensus       101 -----------------~~i~~-------------------~~--~~~piivv~nK~D~~--~~-~~~~~~~~~~~~v~~  139 (207)
                                       ..+..                   +.  ..+|+++++|+.|..  +. +.          ...
T Consensus       155 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n----------~~~  224 (368)
T 2dby_A          155 RADRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGN----------PQV  224 (368)
T ss_dssp             HHCGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTC----------HHH
T ss_pred             ccchhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchh----------hHH
Confidence                             01111                   00  137999999999853  21 01          267


Q ss_pred             HHHHHHHHHhCCcEEEEeccCCCCCHHHHH
Q 028595          140 AQGEELRKQIGASYYIECSSKTQQNVKAVF  169 (207)
Q Consensus       140 ~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  169 (207)
                      +.++++++..+. +++++||+...++.+++
T Consensus       225 ~~v~~~a~~~g~-~vv~iSAk~E~el~eL~  253 (368)
T 2dby_A          225 EAVRRKALEEGA-EVVVVSARLEAELAELS  253 (368)
T ss_dssp             HHHHHHHHHHTC-EEEEECHHHHHHHHTSC
T ss_pred             HHHHHHHHHcCC-eEEEeechhHHHHHHhc
Confidence            888999998887 99999998755554443

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.39  E-value=7.2e-13  Score=111.65  Aligned_cols=116  Identities=11%  Similarity=0.001  Sum_probs=81.4

Q ss_pred             cceeEEEEecccccceeeeeeeccCCC--C---------------CccccCce---eeee-eeEEEECCeEEEEEEEeCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRS--S---------------IWDYIPTV---FDNF-SANVVAEGTTVNLGLWDTA   61 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~---------------~~~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~   61 (207)
                      ...+|+|+|-..+| ||||..+++...  +               .-++.+.-   |.+. +..+.+..+.+.++|+|||
T Consensus        30 r~RNiaIiaHvdaG-KTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAG-KTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSS-HHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             ccceEEEEeCCCCC-HHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            46899999999999 999999986211  0               00111100   1111 1122222234789999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      |+.+|..-....++-+|++|+|+|..+.-..+.. ..|......   ++|.+++.||+|...
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHHh---CCceEEEEecccchh
Confidence            9999999999999999999999999987776665 555444333   899999999999864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.38  E-value=3.6e-14  Score=113.49  Aligned_cols=103  Identities=15%  Similarity=0.106  Sum_probs=62.3

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  132 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~  132 (207)
                      +.+.++||+|....   .......+|++++|+|.++....+.+ ..   .+    -..|.++|+||+|+.+...      
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------  229 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------  229 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence            56789999995321   12345689999999999876543322 11   11    1468899999999864321      


Q ss_pred             CCcccCHHHHHHHHHHh---------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          133 GLVPVTTAQGEELRKQI---------GASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       133 ~~~~v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                           .......+...+         ...+++.+||++|.|+++++++|.+.+.
T Consensus       230 -----~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          230 -----ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             -----HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence                 111222232211         1237889999999999999999988753

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.37  E-value=4.2e-13  Score=98.33  Aligned_cols=107  Identities=7%  Similarity=-0.036  Sum_probs=67.6

Q ss_pred             CCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHH---HHHHhhc--CCCCcEEEEeeCC-CcccCcccccCCCC
Q 028595           60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHY--SPGVPVVLVGTKL-DLREDKHYLADHPG  133 (207)
Q Consensus        60 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~i~~~--~~~~piivv~nK~-D~~~~~~~~~~~~~  133 (207)
                      .+||+..+.+|++||.++|++|||.|.+|.+-.+ ....+   ...+.+.  ..++|++|++||. |++..-        
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am--------  179 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--------  179 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC--------
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC--------
Confidence            4589999999999999999999999999985433 22333   4444432  2579999999995 675432        


Q ss_pred             CcccCHHHHHHHHHH--hCC-cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          134 LVPVTTAQGEELRKQ--IGA-SYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       134 ~~~v~~~~~~~~~~~--~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                          +..++.+....  .+- -.+..|||++|+|+.+.++|+.+.+...
T Consensus       180 ----s~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          180 ----PCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             ----CHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             ----CHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence                33332222111  111 1456799999999999999998766543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.36  E-value=8.2e-13  Score=101.28  Aligned_cols=120  Identities=13%  Similarity=0.002  Sum_probs=69.0

Q ss_pred             EEEEEEeCCCCcccccccc------ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCcEEEEeeCCCcccCc
Q 028595           53 VNLGLWDTAGQEDYNRLRP------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~-~~~~~~piivv~nK~D~~~~~  125 (207)
                      +.+.||||||+........      .++.. ++++++.|.+...+.......+..... ....+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            5789999999876543221      13456 888888887543332222111111111 111378999999999986543


Q ss_pred             ccccCCCCCccc--CHHH-HHH-----------------HHHHhCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          126 HYLADHPGLVPV--TTAQ-GEE-----------------LRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       126 ~~~~~~~~~~~v--~~~~-~~~-----------------~~~~~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                      .. .+   ....  ..+. ...                 +++.++. .+++++||+++.|++++++++.+.+.
T Consensus       188 ~~-~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 EK-ER---HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HH-HH---HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cH-HH---HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            10 00   0000  0000 001                 1244443 27899999999999999999988764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.29  E-value=4.7e-13  Score=106.73  Aligned_cols=106  Identities=15%  Similarity=0.145  Sum_probs=66.2

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  132 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~  132 (207)
                      +.+.||||||......   .....+|++++|+|.++.+..+.+ ..  ..     .+.|.++|+||+|+.+....     
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l-~~--~~-----~~~p~ivv~NK~Dl~~~~~~-----  212 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGI-KK--GL-----MEVADLIVINKDDGDNHTNV-----  212 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCC-CH--HH-----HHHCSEEEECCCCTTCHHHH-----
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHH-HH--hh-----hcccCEEEEECCCCCChHHH-----
Confidence            5789999999654332   245789999999999765432221 11  01     14688999999998653221     


Q ss_pred             CCcccCHHHHHHHHHHhC------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          133 GLVPVTTAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       133 ~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                         ....++.+.....++      ..+++++||++|.|++++++.+.+.+.
T Consensus       213 ---~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          213 ---AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ---HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence               001122333223332      247899999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.28  E-value=9e-13  Score=113.96  Aligned_cols=157  Identities=17%  Similarity=0.066  Sum_probs=96.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcccc-Cceee------------------------------------------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYI-PTVFD------------------------------------------   40 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~-~t~~~------------------------------------------   40 (207)
                      ..+|+++|..++| ||||+|+|++..+.+.-. +++..                                          
T Consensus        51 lp~I~vvG~~saG-KSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           51 LPQIAVVGGQSAG-KSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CSEEEEEECTTTC-HHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCc-HHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            4589999999999 999999999987632111 11000                                          


Q ss_pred             ---------eeeeEEEECCeEEEEEEEeCCCCcc-------------cccccccee-cCCcEEEEEEeCCChhhHHHHHH
Q 028595           41 ---------NFSANVVAEGTTVNLGLWDTAGQED-------------YNRLRPLSY-RGADVFVLAFSLVSRASYENVLK   97 (207)
Q Consensus        41 ---------~~~~~~~~~~~~~~l~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~   97 (207)
                               .....+...+ ...+.++||||-..             ...+...|+ ..+|++++|.|.++.....+. .
T Consensus       130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l  207 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L  207 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred             CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence                     0000111111 12478999999433             122334444 468999999999875433332 2


Q ss_pred             HHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH--HHHHhCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595           98 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus        98 ~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      .++..+..  .+.|+++|.||+|+.+....          .......  +...+++.+++.+||++|.|++++++.+.+.
T Consensus       208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~~~----------~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVDP--QGQRTIGVITKLDLMDEGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHCT--TCSSEEEEEECTTSSCTTCC----------SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHh--cCCCEEEEEeCcccCCcchh----------hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            34445543  37899999999999765431          1111110  0001243456779999999999999998863

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.26  E-value=3.3e-12  Score=98.01  Aligned_cols=107  Identities=7%  Similarity=-0.038  Sum_probs=72.8

Q ss_pred             CCCCccccccccceecCCcEEEEEEeCCChhhHH---HHHHHHHHHHhhc--CCCCcEEEEeeC-CCcccCcccccCCCC
Q 028595           60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE---NVLKKWIPELQHY--SPGVPVVLVGTK-LDLREDKHYLADHPG  133 (207)
Q Consensus        60 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~i~~~--~~~~piivv~nK-~D~~~~~~~~~~~~~  133 (207)
                      .+||+..+.+|++|+.++|++|+|+|.+|++..+   ++ .++...+.+.  ..++|++|++|| .|++..-        
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am--------  264 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--------  264 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC--------
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccCCC--------
Confidence            4789999999999999999999999999987433   33 2333444332  258999999996 5875442        


Q ss_pred             CcccCHHHHHHHHHH--hCC-cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          134 LVPVTTAQGEELRKQ--IGA-SYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       134 ~~~v~~~~~~~~~~~--~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                          +..++.+...-  ..- -.+..|||.+|+|+.+.++|+.+.+...
T Consensus       265 ----s~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          265 ----PCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             ----CHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             ----CHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence                33332222111  111 1456799999999999999999887544

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.25  E-value=2.8e-11  Score=97.12  Aligned_cols=139  Identities=12%  Similarity=0.058  Sum_probs=89.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc----ccccc---ceecC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRP---LSYRG   76 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~~---~~~~~   76 (207)
                      ..|+++|.|||| ||||+|+|++.+.. ..|.-|+.+.....+.+++  ..+.+.||||--.-    ..+..   ..++.
T Consensus        73 a~V~ivG~PNvG-KSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           73 ASVGFVGFPSVG-KSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             EEEEEECCCCHH-HHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CeEEEECCCCCC-HHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            479999999999 99999999987643 3454444444455667777  45789999995322    11222   34567


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595           77 ADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  151 (207)
Q Consensus        77 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  151 (207)
                      +|++++|.|.+++..-...   +..++....   .+.|.+++.||.|...-...  ..........++.+.+...+.+
T Consensus       150 ad~il~vvD~~~p~~~~~~---i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~--~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQI---IEKELEGVGIRLNKTPPDILIKKKEKGGISIT--NTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHH---HHHHHHHTTEEETCCCCCEEEEECSSSCEEEE--ESSCCSSCCHHHHHHHHHHTTC
T ss_pred             cCccccccccCccHHHHHH---HHHHHHHhhHhhccCChhhhhhHhhhhhhhhh--cchhhhhccHHHHHHHHHHhcc
Confidence            9999999999987543332   333333322   46788899999997532210  1111122356777777776654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.21  E-value=5.1e-11  Score=103.45  Aligned_cols=117  Identities=16%  Similarity=0.042  Sum_probs=81.3

Q ss_pred             ccceeEEEEecccccceeeeeeeccCC--------CCCc--cccCce------eeee-ee--EEEEC-----CeEEEEEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGR--------SSIW--DYIPTV------FDNF-SA--NVVAE-----GTTVNLGL   57 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~--------~~~~--~~~~t~------~~~~-~~--~~~~~-----~~~~~l~i   57 (207)
                      +...+|+|+|.-.+| ||||..+|+..        +...  .+..+.      |.+. +.  .+...     ...+.++|
T Consensus        11 ~~IRNi~IiaHvd~G-KTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           11 NRYRNIGICAHVDAG-KTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGEEEEEEECCSSSC-HHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             HHCeEEEEEcCCCCC-HHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            456899999999999 99999998621        1110  011110      1111 11  12222     23688999


Q ss_pred             EeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           58 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        58 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      +||||+-+|..-....++-+|++|+|+|+...-..+.. ..|......   ++|.+++.||+|...
T Consensus        90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred             EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccC
Confidence            99999999999889999999999999999987666655 455554444   899999999999753

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.19  E-value=3.2e-12  Score=109.62  Aligned_cols=115  Identities=13%  Similarity=0.025  Sum_probs=79.8

Q ss_pred             ceeEEEEecccccceeeeeeeccC--CCCC------c-----cccCce---eeee-eeEEEECCeEEEEEEEeCCCCccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG--RSSI------W-----DYIPTV---FDNF-SANVVAEGTTVNLGLWDTAGQEDY   66 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~--~~~~------~-----~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~   66 (207)
                      ..+|+|+|-..+| ||||..+++.  +.+.      .     ++.+.-   |.+. +..+.+.-+.+.++|+||||+.+|
T Consensus         2 IRNi~IiaHvD~G-KTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            2 IINIGVLAHVDAG-KTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCCEEECCSTTS-SHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred             eeEEEEEcCCCCC-HHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence            4689999999999 9999998851  1111      0     111100   1111 112223334477899999999999


Q ss_pred             cccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           67 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      .......++-+|++|+|+|+.+.-..+.. ..|......   ++|.+++.||.|...
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEecccccc
Confidence            99888999999999999999987555554 444443333   799999999999764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.08  E-value=2.2e-11  Score=98.23  Aligned_cols=88  Identities=10%  Similarity=-0.032  Sum_probs=49.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCe---------------EEEEEEEeCCCCcccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGT---------------TVNLGLWDTAGQEDYN   67 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~---------------~~~l~i~D~~G~~~~~   67 (207)
                      ..+|+++|.+++| ||||+|+|++........|..+... ...+.+++.               ...+.+|||||.....
T Consensus        22 ~~kvgIVG~pnvG-KSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           22 SLKIGIVGLPNVG-KSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             CCCEEEECCSSSS-HHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4689999999999 9999999998865333333322222 334444442               2358999999987654


Q ss_pred             c-------cccceecCCcEEEEEEeCCChhhH
Q 028595           68 R-------LRPLSYRGADVFVLAFSLVSRASY   92 (207)
Q Consensus        68 ~-------~~~~~~~~~d~~i~v~d~~~~~s~   92 (207)
                      +       .+..+++++|++++|+|+++.+++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            3       334667899999999999875443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.06  E-value=2.7e-10  Score=91.56  Aligned_cols=98  Identities=20%  Similarity=0.251  Sum_probs=75.3

Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ  141 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~  141 (207)
                      .++.|+++.+++++.++++++|+|+++++      ..|...+.+...+.|+++|+||+|+.+...           ..+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~-----------~~~~  117 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSV-----------KHDK  117 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTS-----------CHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCccc-----------CHHH
Confidence            56788899999999999999999999864      345555555556899999999999975432           3333


Q ss_pred             HHH----HHHHhCCc--EEEEeccCCCCCHHHHHHHHHHHH
Q 028595          142 GEE----LRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       142 ~~~----~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      .++    +++..|..  +++.+||++|.|++++++.+.+..
T Consensus       118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            333    45666763  789999999999999999997654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.01  E-value=1.3e-10  Score=92.42  Aligned_cols=104  Identities=13%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  132 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~  132 (207)
                      +.+.++||+|.....   ......+|.+++++|.+..+..+.+ ...   +.    ..|.+++.||+|+.+....     
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~---i~----~~~~ivvlNK~Dl~~~~~~-----  211 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKG---IF----ELADMIAVNKADDGDGERR-----  211 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTT---HH----HHCSEEEEECCSTTCCHHH-----
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHH---Hh----ccccEEEEEchhccCchhH-----
Confidence            578899999964321   1234679999999998754332211 111   11    2455777799997543211     


Q ss_pred             CCcccCHHHHHHHHHHh---C------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          133 GLVPVTTAQGEELRKQI---G------ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       133 ~~~~v~~~~~~~~~~~~---~------~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                           .....+.+....   .      ..+++.+||+++.|++++++.+.+...
T Consensus       212 -----s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          212 -----ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             -----HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                 222333443322   1      237888999999999999999987653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.90  E-value=1.1e-09  Score=88.11  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=73.4

Q ss_pred             CCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHH
Q 028595           61 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA  140 (207)
Q Consensus        61 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~  140 (207)
                      ..++.|++..++++.+++++++|+|++++++      .|...+.+...+.|+++|+||+|+.+...           ..+
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~-----------~~~  118 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSV-----------KYP  118 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTC-----------CHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCcc-----------CHH
Confidence            4588899999999999999999999999774      23333333345899999999999976432           333


Q ss_pred             HHHH----HHHHhCC--cEEEEeccCCCCCHHHHHHHHHHHH
Q 028595          141 QGEE----LRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       141 ~~~~----~~~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      ..++    +++..|.  .+++.+||++|.|++++++.+.+..
T Consensus       119 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          119 KLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3333    3556665  3789999999999999999997654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.88  E-value=9.3e-09  Score=83.03  Aligned_cols=84  Identities=14%  Similarity=0.018  Sum_probs=56.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC-CccccCcee-eeeeeEEEECCe---------------EEEEEEEeCCCCccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS-IWDYIPTVF-DNFSANVVAEGT---------------TVNLGLWDTAGQEDY   66 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~-~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~   66 (207)
                      ..+++++|.+++| ||||+|+|++... .....|..+ ......+.+++.               ...+.+||+||....
T Consensus        20 g~~vgiVG~pnaG-KSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           20 NLKTGIVGMPNVG-KSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             CCEEEEEECSSSS-HHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            3589999999999 9999999998764 333333222 222334555541               136889999995432


Q ss_pred             cc-------cccceecCCcEEEEEEeCCC
Q 028595           67 NR-------LRPLSYRGADVFVLAFSLVS   88 (207)
Q Consensus        67 ~~-------~~~~~~~~~d~~i~v~d~~~   88 (207)
                      .+       ....+++.+|+++.|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            11       22344578999999999864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.85  E-value=1.8e-09  Score=83.66  Aligned_cols=101  Identities=15%  Similarity=0.101  Sum_probs=69.3

Q ss_pred             EEeCCCCc-cccccccceecCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC
Q 028595           57 LWDTAGQE-DYNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL  134 (207)
Q Consensus        57 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~  134 (207)
                      |-..||+. .........+..+|+++.|+|+.++.+.... ...|+       .+.|.++|+||+|+.+..         
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~---------   66 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAA---------   66 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHH---------
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHH---------
Confidence            44567865 3334455678889999999999998877531 13332       479999999999996532         


Q ss_pred             cccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          135 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       135 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                         ..+....+.+..+. +++.+||.++.|++++++.+.+.+.
T Consensus        67 ---~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           67 ---VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             ---HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence               22333444455576 8899999999999999998877664

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.48  E-value=1.4e-07  Score=73.75  Aligned_cols=96  Identities=24%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH
Q 028595           65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  144 (207)
Q Consensus        65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~  144 (207)
                      +...+.+..+.++|.+++|.|+.++......+..++...+.  .++|.++|.||+|+.+....        ....+...+
T Consensus        75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~--------~~~~~~~~~  144 (307)
T 1t9h_A           75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDT--------EDTIQAYAE  144 (307)
T ss_dssp             CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHH--------HHHHHHHHH
T ss_pred             hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhh--------HHHHHHHHH
Confidence            34455666789999999999999775554455777665544  37999999999999765310        001233444


Q ss_pred             HHHHhCCcEEEEeccCCCCCHHHHHHH
Q 028595          145 LRKQIGASYYIECSSKTQQNVKAVFDA  171 (207)
Q Consensus       145 ~~~~~~~~~~~e~Sa~~~~~i~~~f~~  171 (207)
                      +.+..|. +.+.+||.++.|+++++..
T Consensus       145 ~y~~~g~-~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          145 DYRNIGY-DVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             HHHHHTC-CEEECCHHHHTTCTTTGGG
T ss_pred             HHHhCCC-eEEEEecCCCCCHHHHHhh
Confidence            4455677 8899999998888776543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.39  E-value=5.3e-09  Score=84.10  Aligned_cols=136  Identities=11%  Similarity=0.067  Sum_probs=77.9

Q ss_pred             eeEEEEecccccceeeeeeeccCC------CCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc----c---
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR------SSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL----R---   70 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~------~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~----~---   70 (207)
                      .+|+++|.+++| ||||+|++++.      .......|.  .+. ...+.++..   +.++||||-....++    .   
T Consensus       163 ~~i~~vG~~nvG-KStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          163 GDVYVVGCTNVG-KSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             SCEEEECCTTSS-HHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred             CcEEEEcCCCCc-hHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence            479999999999 99999999875      221111121  112 223333332   689999995432211    1   


Q ss_pred             -ccee--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595           71 -PLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  147 (207)
Q Consensus        71 -~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~  147 (207)
                       ..++  +..+.++++.+..+.--...+ . .+..+..  .+.|++++.||.|..+...           .....+.+.+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~l~~l~~--~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~  301 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGL-A-RLDYIKG--GRRSFVCYMANELTVHRTK-----------LEKADSLYAN  301 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEEE-----------GGGHHHHHHH
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCE-E-EEEEccC--CCceEEEEecCCccccccc-----------HHHHHHHHHH
Confidence             1111  567889999987432111122 0 1111221  3689999999999876543           3344555666


Q ss_pred             HhCCcEEEEeccCCC
Q 028595          148 QIGASYYIECSSKTQ  162 (207)
Q Consensus       148 ~~~~~~~~e~Sa~~~  162 (207)
                      .+|. .....++.+.
T Consensus       302 ~~g~-~l~p~~~~~~  315 (369)
T 3ec1_A          302 QLGE-LLSPPSKRYA  315 (369)
T ss_dssp             HBTT-TBCSSCGGGT
T ss_pred             hcCC-ccCCCCchhh
Confidence            6765 4445555443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.37  E-value=3.5e-09  Score=85.12  Aligned_cols=135  Identities=8%  Similarity=-0.012  Sum_probs=74.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-----ccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccc----c---
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-----WDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR----P---   71 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-----~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~----~---   71 (207)
                      .+|+++|.+++| ||||+|++++....     ....+..+.+. ...+.+++.   +.++||||-.....+.    .   
T Consensus       161 ~~i~~vG~~nvG-KStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          161 KDVYVVGCTNVG-KSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             SCEEEEEBTTSS-HHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             ceEEEecCCCCC-hhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            479999999999 99999999875311     11111222222 223333332   7899999954322111    1   


Q ss_pred             -ce--ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           72 -LS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        72 -~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                       .+  .+..+.++++.+..+..-...+  ..+..+..  .+.|++++.||.|..+...           .....+.+.+.
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~~-----------~~~~~~~~~~~  301 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRTK-----------LEKADELYKNH  301 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEEE-----------HHHHHHHHHHH
T ss_pred             HHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCcccccccc-----------HHHHHHHHHHH
Confidence             11  2456788888876432111122  01111221  3689999999999876553           34445556666


Q ss_pred             hCCcEEEEecc
Q 028595          149 IGASYYIECSS  159 (207)
Q Consensus       149 ~~~~~~~e~Sa  159 (207)
                      +|. .....++
T Consensus       302 ~g~-~l~p~~~  311 (368)
T 3h2y_A          302 AGD-LLSPPTP  311 (368)
T ss_dssp             BTT-TBCSSCH
T ss_pred             hCC-ccCCCch
Confidence            665 3334443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.34  E-value=1.2e-06  Score=71.11  Aligned_cols=164  Identities=12%  Similarity=0.026  Sum_probs=86.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCce-eeee--eeEEEECCeEEEEEEEeCCCCccccccccce-----ecC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTV-FDNF--SANVVAEGTTVNLGLWDTAGQEDYNRLRPLS-----YRG   76 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~-~~~~--~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~-----~~~   76 (207)
                      ..++++|.+++| ||||+|.+.+-.-...-.-+. +...  ...+.-....-.+.+||++|-.........+     +..
T Consensus        70 ~~valvG~nGaG-KSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           70 LNVAVTGETGSG-KSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             EEEEEEECTTSS-HHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             eEEEEECCCCCc-HHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            368999999999 999999998743221110011 1000  0111111111247899999843211111111     233


Q ss_pred             CcEEEEEEeCC--ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH----HHHHHHHH---
Q 028595           77 ADVFVLAFSLV--SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT----AQGEELRK---  147 (207)
Q Consensus        77 ~d~~i~v~d~~--~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~----~~~~~~~~---  147 (207)
                      .+.+++ +|..  .+....     +...+..  .+.|+++|.||.|+.--++..   .++.+...    +..+++..   
T Consensus       149 ~~~~~~-lS~G~~~kqrv~-----la~aL~~--~~~p~~lV~tkpdlllLDEPt---sgLD~~~~~~l~~~l~~l~~~~l  217 (413)
T 1tq4_A          149 YDFFII-ISATRFKKNDID-----IAKAISM--MKKEFYFVRTKVDSDITNEAD---GEPQTFDKEKVLQDIRLNCVNTF  217 (413)
T ss_dssp             CSEEEE-EESSCCCHHHHH-----HHHHHHH--TTCEEEEEECCHHHHHHHHHT---TCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCeEE-eCCCCccHHHHH-----HHHHHHh--cCCCeEEEEecCcccccCccc---ccCCHHHHHHHHHHHHHHHHHHH
Confidence            455555 7776  333322     2223322  268999999999964111100   00111122    23334431   


Q ss_pred             -HhC--CcEEEEecc--CCCCCHHHHHHHHHHHHhCCC
Q 028595          148 -QIG--ASYYIECSS--KTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       148 -~~~--~~~~~e~Sa--~~~~~i~~~f~~i~~~~~~~~  180 (207)
                       +.|  ....+.+|+  .++.|++++.+.+.+.+.+.+
T Consensus       218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence             222  235688999  677789999999998886544

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.29  E-value=3.9e-06  Score=68.29  Aligned_cols=115  Identities=10%  Similarity=0.011  Sum_probs=61.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccC--ceeeee-eeEEEEC--CeEEEEEEEeCCCCcccc------------
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIP--TVFDNF-SANVVAE--GTTVNLGLWDTAGQEDYN------------   67 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~--t~~~~~-~~~~~~~--~~~~~l~i~D~~G~~~~~------------   67 (207)
                      ++++++|.+++| ||||+|.+++..+......  +.+... ...+...  +-...+.++|++|-....            
T Consensus        43 ~~vaLvG~nGaG-KSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           43 FNILCVGETGLG-KSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEECSTTSS-SHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            469999999999 9999999988754321110  111111 1122222  223478899998743210            


Q ss_pred             --ccc----cc---------eecCCc---EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595           68 --RLR----PL---------SYRGAD---VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        68 --~~~----~~---------~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~  125 (207)
                        ..+    ..         ...+++   +++|+.|....-+..++  .++..+.   .++|+++|.||+|.....
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~~  192 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISKS  192 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccchH
Confidence              000    01         122333   35666666554444433  4444443   479999999999986443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.24  E-value=1.8e-07  Score=77.80  Aligned_cols=149  Identities=11%  Similarity=0.019  Sum_probs=86.0

Q ss_pred             ceeEEEEecccccceeeeeeecc------CCCCC----ccccCcee-------eeeeeEEEE--CC--------------
Q 028595            4 LAKLACLFATQVTSFLLYVLSVS------GRSSI----WDYIPTVF-------DNFSANVVA--EG--------------   50 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~------~~~~~----~~~~~t~~-------~~~~~~~~~--~~--------------   50 (207)
                      ...|+++|.+++| |||+++.|.      +.+..    +.+.|...       ......+..  .+              
T Consensus       101 ~~vI~ivG~~GvG-KTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          101 QNVIMFVGLQGSG-KTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             -EEEEEECSTTSS-HHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            3478999999999 999999998      44321    11111110       000000000  00              


Q ss_pred             --eEEEEEEEeCCCCccccc-cccc---e--ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCc
Q 028595           51 --TTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDL  121 (207)
Q Consensus        51 --~~~~l~i~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~  121 (207)
                        ..+.+.|+||||...... +...   .  +..+|.+++|.|.+.......    ....+..   ..|+ .+|.||.|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCcc
Confidence              236789999999754221 1110   1  226899999999987543222    2233332   2675 899999998


Q ss_pred             ccCcccccCCCCCcccCHHHHHHHHHHhCCcEE------------------EEeccCCCCC-HHHHHHHHHHH
Q 028595          122 REDKHYLADHPGLVPVTTAQGEELRKQIGASYY------------------IECSSKTQQN-VKAVFDAAIKV  175 (207)
Q Consensus       122 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------~e~Sa~~~~~-i~~~f~~i~~~  175 (207)
                      .....              .+.......+. |.                  ..+|+..|.| +.++++++.+.
T Consensus       253 ~~~~g--------------~~l~~~~~~g~-PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGG--------------GALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCT--------------HHHHHHHHHCC-CEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchH--------------HHHHHHHHhCC-CeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            63321              12223344443 22                  2368999999 99999988765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.15  E-value=5e-06  Score=63.89  Aligned_cols=115  Identities=14%  Similarity=0.019  Sum_probs=63.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcc---------ccCceeeeeeeEEEECCe--EEEEEEEeCCCCccccc----
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD---------YIPTVFDNFSANVVAEGT--TVNLGLWDTAGQEDYNR----   68 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~--~~~l~i~D~~G~~~~~~----   68 (207)
                      .++++++|.+++| ||||+|.+++......         ..++.. .....+.....  ...+.++|++|-.....    
T Consensus         2 ~f~v~lvG~nGaG-KSTLln~L~g~~~~~~G~i~~~g~~i~~~~~-~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~   79 (270)
T 3sop_A            2 DFNIMVVGQSGLG-KSTLVNTLFKSQVSRKASSWNREEKIPKTVE-IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC   79 (270)
T ss_dssp             EEEEEEEESSSSS-HHHHHHHHHHHHC------------CCCCCS-CCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred             eeEEEEECCCCCC-HHHHHHHHhCCCCCCCCccccCCcccCccee-eeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence            4789999999999 9999999986532211         001100 00111111221  23678999987321100    


Q ss_pred             ------------------------cccceecCCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           69 ------------------------LRPLSYRGADVFVLAFSLV-SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        69 ------------------------~~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                                              ..+..+..+++++++.|-. ..-+..+.  .++..+.+   ..++++|.+|+|...
T Consensus        80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~~---~~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSK---VVNIIPVIAKADTMT  154 (270)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHT---TSEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHHh---cCcEEEEEeccccCC
Confidence                                    0112234468888888844 32222222  34445544   389999999999865


Q ss_pred             Cc
Q 028595          124 DK  125 (207)
Q Consensus       124 ~~  125 (207)
                      ..
T Consensus       155 ~~  156 (270)
T 3sop_A          155 LE  156 (270)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.10  E-value=1.2e-06  Score=67.01  Aligned_cols=93  Identities=15%  Similarity=0.105  Sum_probs=62.7

Q ss_pred             CCCCccc-cccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccC
Q 028595           60 TAGQEDY-NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT  138 (207)
Q Consensus        60 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~  138 (207)
                      .||+... .......++++|+++.|+|+.++.+....  .    +. .. ++|.++|+||+|+.+..            .
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~----l~-ll-~k~~iivlNK~DL~~~~------------~   63 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G----VD-FS-RKETIILLNKVDIADEK------------T   63 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T----SC-CT-TSEEEEEEECGGGSCHH------------H
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H----HH-hc-CCCcEEEEECccCCCHH------------H
Confidence            4565432 23445667899999999999998777542  1    11 11 78999999999996532            2


Q ss_pred             HHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595          139 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       139 ~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      .+....+.+..|. ++ .+||.++.|++++++.+..
T Consensus        64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHH
Confidence            2334445555677 67 9999999999999887644

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.99  E-value=9.3e-07  Score=67.67  Aligned_cols=56  Identities=11%  Similarity=-0.037  Sum_probs=35.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCcc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED   65 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~   65 (207)
                      .+++++|.+++| ||||+|++.+.... .+.++.|.+... .+.++.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vG-KSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTG-KSTIINKLKGKRAS-SVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSS-HHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCC-HHHHHHHHhccccc-ccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            589999999999 99999999987643 233444443322 233232   478999999654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.98  E-value=1.9e-06  Score=66.69  Aligned_cols=56  Identities=13%  Similarity=-0.099  Sum_probs=34.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE   64 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~   64 (207)
                      ..+++++|.++|| ||||+|++.+..... ..++.+.+. ...+.++.   .+.+|||||--
T Consensus       120 ~~~v~~vG~~nvG-KSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          120 AIRALIIGIPNVG-KSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CEEEEEEESTTSS-HHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CceEEEEecCCCc-hHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            3589999999999 999999999876321 122222222 11233332   47899999964

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.94  E-value=5.3e-05  Score=60.38  Aligned_cols=87  Identities=20%  Similarity=0.253  Sum_probs=58.6

Q ss_pred             ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595           72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  151 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  151 (207)
                      ....++|.+++|.+.. +......+..|+...+..  ++|.+||+||+|+.+....         ...+......+..|+
T Consensus       126 ~i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~---------~~~~~~~~~y~~~G~  193 (358)
T 2rcn_A          126 PIAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGM---------DFVNEQMDIYRNIGY  193 (358)
T ss_dssp             EEEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHH---------HHHHHHHHHHHTTTC
T ss_pred             HHHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhH---------HHHHHHHHHHHhCCC
Confidence            3578999999997764 544444446666554443  7888999999999754310         011223333345677


Q ss_pred             cEEEEeccCCCCCHHHHHHH
Q 028595          152 SYYIECSSKTQQNVKAVFDA  171 (207)
Q Consensus       152 ~~~~e~Sa~~~~~i~~~f~~  171 (207)
                       +.+.+||.++.|++++...
T Consensus       194 -~v~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          194 -RVLMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             -CEEECBTTTTBTHHHHHHH
T ss_pred             -cEEEEecCCCcCHHHHHHh
Confidence             7899999999999988764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.63  E-value=1.6e-05  Score=67.31  Aligned_cols=61  Identities=16%  Similarity=0.050  Sum_probs=38.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCce-eeeeeeEEE---E-CCeEEEEEEEeCCCCcc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTV-FDNFSANVV---A-EGTTVNLGLWDTAGQED   65 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~-~~~~~~~~~---~-~~~~~~l~i~D~~G~~~   65 (207)
                      ...|+++|.+++| ||||+|+|++......+..|. +.+......   + ......+.++||||-..
T Consensus        38 ~~~VaivG~pnvG-KStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           38 MVVVAIVGLYRTG-KSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             EEEEEEEEBTTSS-HHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CcEEEEECCCCCC-HHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3578999999999 999999999886432222222 111111111   1 12234678999999653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.45  E-value=8.6e-05  Score=60.75  Aligned_cols=86  Identities=16%  Similarity=0.046  Sum_probs=50.7

Q ss_pred             EEEEEEeCCCCccccc-ccc-----ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595           53 VNLGLWDTAGQEDYNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH  126 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~  126 (207)
                      +.+.|+||+|...... +..     .....+|.+++|.|.+........    ...+...  -.+..+|.||.|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCccc--
Confidence            6788999999543221 100     112357899999998875443332    2333321  2345699999997532  


Q ss_pred             cccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595          127 YLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus       127 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                                  ...+..+....+. |+..++.
T Consensus       255 ------------gG~~ls~~~~~g~-PI~fig~  274 (443)
T 3dm5_A          255 ------------GGGALSAVAATGA-PIKFIGT  274 (443)
T ss_dssp             ------------HHHHHHHHHTTCC-CEEEEEC
T ss_pred             ------------ccHHHHHHHHHCC-CEEEEEc
Confidence                        2334555666776 6655554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.33  E-value=2.4e-05  Score=64.04  Aligned_cols=64  Identities=19%  Similarity=0.148  Sum_probs=39.2

Q ss_pred             EEEEEEEeCCCCccccc-cc-----cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-c-EEEEeeCCCcc
Q 028595           52 TVNLGLWDTAGQEDYNR-LR-----PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-P-VVLVGTKLDLR  122 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-p-iivv~nK~D~~  122 (207)
                      .+.+.|+||||...... +.     -..+..+|.+++|.|.+......    .....+.   +.. | ..+|.||.|..
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~---~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAG----IQAKAFK---EAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH----HHHHHHH---TTSCSCEEEEEECSSSC
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHH----HHHHHHh---hcccCCeEEEEeCCCCc
Confidence            35678999999654211 10     01123689999999987654221    2223332   245 6 78999999974

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.90  E-value=0.00017  Score=61.66  Aligned_cols=23  Identities=13%  Similarity=0.023  Sum_probs=20.7

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .++++|.+++| ||||++.+.+-.
T Consensus        47 ~iaIvG~nGsG-KSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSG-KSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSC-HHHHHHHHHSCC
T ss_pred             eEEEECCCCCh-HHHHHHHHhCCC
Confidence            48999999999 999999998763

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.87  E-value=8e-06  Score=67.65  Aligned_cols=107  Identities=9%  Similarity=-0.057  Sum_probs=62.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCc--cccccc--------cc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQE--DYNRLR--------PL   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~--~~~~~~--------~~   72 (207)
                      ..+|+++|.+++| |||+.++|...-. ....++.+.... ......+......+||..|++  +.+..+        ..
T Consensus        39 ~~~IvlvGlpGsG-KSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           39 PTLIVMVGLPARG-KTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CEEEEEECCTTSS-HHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCC-HHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999 9999999875421 112223221100 000011112334689998873  223333        55


Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEe
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG  116 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~  116 (207)
                      ++..+.+.++|+|.++. +.... ..|...+.+.  ..+++.+-
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~  156 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVE  156 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEE
Confidence            66677888999999987 44444 6676666553  34444433

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.82  E-value=0.00071  Score=52.55  Aligned_cols=92  Identities=14%  Similarity=0.078  Sum_probs=55.3

Q ss_pred             EEEEEEEeCCCCcc--cc-cccc-----ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcc
Q 028595           52 TVNLGLWDTAGQED--YN-RLRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLR  122 (207)
Q Consensus        52 ~~~l~i~D~~G~~~--~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~  122 (207)
                      .+.+.|+||||...  .. .+..     .....+|.+++|.|.+......    .....+..   ..| ..+|.||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCC
Confidence            35788999999765  21 1111     1234689999999987532221    22233332   456 67899999964


Q ss_pred             cCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHH
Q 028595          123 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA  167 (207)
Q Consensus       123 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  167 (207)
                      .              ....+..++...+. |...++  +|+++++
T Consensus       253 ~--------------~~g~~~~~~~~~~~-pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 A--------------KGGGALSAVAATGA-TIKFIG--TGEKIDE  280 (297)
T ss_dssp             T--------------THHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             c--------------chHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence            2              23345667777887 665555  4555543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.54  E-value=0.00029  Score=57.57  Aligned_cols=91  Identities=13%  Similarity=0.077  Sum_probs=54.0

Q ss_pred             EEEEEEEeCCCCcc--ccc-ccc-----ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           52 TVNLGLWDTAGQED--YNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        52 ~~~l~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      .+.+.|.||||...  ... +..     ......+.+++|.|.+........    ...+.+.  -.+..+|.||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEecccccc
Confidence            35678999999543  111 110     011246899999999875443333    2233221  245789999999753


Q ss_pred             CcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCH
Q 028595          124 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV  165 (207)
Q Consensus       124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i  165 (207)
                                    ....+.......+. |+..++.  |+++
T Consensus       253 --------------~~G~als~~~~~g~-Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 --------------KGGGALSAVVATGA-TIKFIGT--GEKI  277 (433)
T ss_dssp             --------------CHHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred             --------------cchHHHHHHHHHCC-CEEEEEC--CCCh
Confidence                          23445666667787 7766665  5554

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.32  E-value=0.0011  Score=54.27  Aligned_cols=22  Identities=5%  Similarity=-0.224  Sum_probs=19.6

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|.|+|.+++| ||+|+|.+++
T Consensus        68 ~vVsV~G~~~~G-KStLLN~llg   89 (447)
T 3q5d_A           68 VAVSVAGAFRKG-KSFLMDFMLR   89 (447)
T ss_dssp             EEEEEEESTTSS-HHHHHHHHHH
T ss_pred             EEEEEECCCCCc-HHHHHHHHhh
Confidence            358899999999 9999999985

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.03  E-value=0.0023  Score=46.52  Aligned_cols=26  Identities=4%  Similarity=-0.248  Sum_probs=20.2

Q ss_pred             CccceeEEEEecccccceeeeeeeccC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      |.....++++|.+++| ||||++.+.+
T Consensus         1 m~~g~~i~lvGpsGaG-KSTLl~~L~~   26 (198)
T 1lvg_A            1 MAGPRPVVLSGPSGAG-KSTLLKKLFQ   26 (198)
T ss_dssp             ----CCEEEECCTTSS-HHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCC-HHHHHHHHHh
Confidence            5555679999999999 9999999875

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=94.39  E-value=0.0045  Score=44.23  Aligned_cols=22  Identities=18%  Similarity=0.010  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      +++++|.+++| ||||++.+.+.
T Consensus         2 ~i~l~G~nGsG-KTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVG-KTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHHH
Confidence            68999999999 99999988754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.23  E-value=0.0061  Score=42.82  Aligned_cols=27  Identities=4%  Similarity=-0.199  Sum_probs=21.5

Q ss_pred             CccceeEEEEecccccceeeeeeeccCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      |.....|+++|.+++| |||+.+.+.+.
T Consensus         1 m~~~~~i~l~G~~GsG-KSTl~~~La~~   27 (173)
T 1kag_A            1 MAEKRNIFLVGPMGAG-KSTIGRQLAQQ   27 (173)
T ss_dssp             --CCCCEEEECCTTSC-HHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCC-HHHHHHHHHHH
Confidence            5555679999999999 99999998653

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=93.98  E-value=0.043  Score=39.41  Aligned_cols=65  Identities=11%  Similarity=0.035  Sum_probs=45.8

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCcEEEEeeCCCcc
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLR  122 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piivv~nK~D~~  122 (207)
                      +.+.|+|+|+...  ......+..+|.++++...+...  ..+ ..+++.+...   .++.++.+|.|+.|..
T Consensus        76 yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           76 YDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSA-AGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             SSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHH-HHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHH-HHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            6788999998652  33345566799999999876554  444 5566666543   2467889999999853

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.94  E-value=0.0071  Score=42.70  Aligned_cols=26  Identities=8%  Similarity=-0.055  Sum_probs=19.7

Q ss_pred             CccceeEEEEecccccceeeeeeeccC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      |+.+.+|+++|.+++| |||+.+.|..
T Consensus         1 ~~~m~~i~i~G~~GsG-KsTla~~La~   26 (175)
T 1via_A            1 MSLAKNIVFIGFMGSG-KSTLARALAK   26 (175)
T ss_dssp             ----CCEEEECCTTSC-HHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCC-HHHHHHHHHH
Confidence            6666689999999999 9999998853

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.89  E-value=0.0059  Score=43.47  Aligned_cols=22  Identities=18%  Similarity=-0.069  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+.
T Consensus         7 ~i~i~GpsGsG-KSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVG-RRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHhh
Confidence            57899999999 99999998753

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=93.82  E-value=0.0076  Score=43.54  Aligned_cols=24  Identities=4%  Similarity=-0.183  Sum_probs=20.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .--++++|++++| ||||++.+.+.
T Consensus         7 g~ii~l~Gp~GsG-KSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAG-KTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSC-HHHHHHHHHHH
T ss_pred             CcEEEEECcCCCC-HHHHHHHHHhh
Confidence            3458999999999 99999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.56  E-value=0.011  Score=43.38  Aligned_cols=26  Identities=0%  Similarity=-0.197  Sum_probs=21.4

Q ss_pred             CccceeEEEEecccccceeeeeeeccC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      |.....|+++|++++| |||+.+.+.+
T Consensus         2 m~~~~~i~i~G~~GsG-KSTl~~~L~~   27 (227)
T 1cke_A            2 TAIAPVITIDGPSGAG-KGTLCKAMAE   27 (227)
T ss_dssp             -CCSCEEEEECCTTSS-HHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCC-HHHHHHHHHH
Confidence            4444679999999999 9999998864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.53  E-value=0.0088  Score=44.20  Aligned_cols=27  Identities=4%  Similarity=-0.183  Sum_probs=21.2

Q ss_pred             CccceeEEEEecccccceeeeeeeccCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      |+.---++++|.+++| ||||++.+.+.
T Consensus        13 ~~~G~ii~l~GpsGsG-KSTLlk~L~g~   39 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAG-KSSLIQALLKT   39 (219)
T ss_dssp             --CCCEEEEECCTTSC-HHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCC-HHHHHHHHhcc
Confidence            4444568999999999 99999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.49  E-value=0.011  Score=42.95  Aligned_cols=26  Identities=15%  Similarity=-0.012  Sum_probs=22.1

Q ss_pred             CccceeEEEEecccccceeeeeeeccC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      |....-|+++|.+++| ||||++.|..
T Consensus         9 ~~~~~~i~l~G~sGsG-KsTl~~~L~~   34 (204)
T 2qor_A            9 MARIPPLVVCGPSGVG-KGTLIKKVLS   34 (204)
T ss_dssp             CCCCCCEEEECCTTSC-HHHHHHHHHH
T ss_pred             cccCCEEEEECCCCCC-HHHHHHHHHH
Confidence            5556678999999999 9999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=93.18  E-value=0.0093  Score=43.43  Aligned_cols=22  Identities=14%  Similarity=-0.084  Sum_probs=19.2

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+-
T Consensus        22 i~~l~GpnGsG-KSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVG-KSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHhh
Confidence            47899999999 99999998754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=93.15  E-value=0.0084  Score=46.70  Aligned_cols=23  Identities=9%  Similarity=-0.161  Sum_probs=19.5

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .++++|.+++| ||||+|.+.+..
T Consensus       175 ~~~lvG~sG~G-KSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVG-KSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHH-HHHHHHHHCC--
T ss_pred             EEEEECCCCCC-HHHHHHHhcccc
Confidence            57999999999 999999998653

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.11  E-value=0.016  Score=41.80  Aligned_cols=27  Identities=7%  Similarity=-0.154  Sum_probs=23.2

Q ss_pred             CccceeEEEEecccccceeeeeeeccCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      |.....|++.|.+++| |||+.+.|...
T Consensus         1 m~~~~~I~l~G~~GsG-KsT~~~~L~~~   27 (204)
T 2v54_A            1 MSRGALIVFEGLDKSG-KTTQCMNIMES   27 (204)
T ss_dssp             CCCCCEEEEECCTTSS-HHHHHHHHHHT
T ss_pred             CCCCcEEEEEcCCCCC-HHHHHHHHHHH
Confidence            6666789999999999 99999998654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=93.08  E-value=0.012  Score=41.53  Aligned_cols=21  Identities=0%  Similarity=-0.219  Sum_probs=17.8

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -++++|.+++| ||||++.+..
T Consensus        11 i~~l~G~nGsG-KSTl~~~~~~   31 (171)
T 4gp7_A           11 LVVLIGSSGSG-KSTFAKKHFK   31 (171)
T ss_dssp             EEEEECCTTSC-HHHHHHHHSC
T ss_pred             EEEEECCCCCC-HHHHHHHHcc
Confidence            47899999999 9999998653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.03  E-value=0.013  Score=46.57  Aligned_cols=23  Identities=9%  Similarity=-0.184  Sum_probs=20.6

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .++++|.+++| ||||+|.+.+..
T Consensus       217 ~~~lvG~sG~G-KSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVG-KSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHCCS
T ss_pred             EEEEECCCCcc-HHHHHHHHhccc
Confidence            57899999999 999999998764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=93.01  E-value=0.018  Score=41.01  Aligned_cols=23  Identities=4%  Similarity=-0.288  Sum_probs=20.2

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .-++++|.+++| ||||++.+.+.
T Consensus        10 ~~i~l~G~~GsG-KSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSG-KSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSC-HHHHHHHHHTC
T ss_pred             eEEEEECCCCCC-HHHHHHHHHhc
Confidence            458899999999 99999999765

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=92.93  E-value=0.011  Score=43.58  Aligned_cols=23  Identities=9%  Similarity=-0.154  Sum_probs=19.8

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|.+++| ||||++.+.+.
T Consensus        24 ~~~~lvGpsGsG-KSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVG-KGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSS-HHHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhh
Confidence            357899999999 99999998763

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=92.91  E-value=0.018  Score=42.60  Aligned_cols=22  Identities=5%  Similarity=-0.215  Sum_probs=14.5

Q ss_pred             eEEEEecccccceeeeeeecc-CC
Q 028595            6 KLACLFATQVTSFLLYVLSVS-GR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~-~~   28 (207)
                      -++++|++++| ||||++.+. +.
T Consensus        29 ii~l~Gp~GsG-KSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCG-KTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC-----CHHHHHHC--
T ss_pred             EEEEECCCCCC-HHHHHHHHHhcC
Confidence            47899999999 999999998 54

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=92.89  E-value=0.015  Score=43.46  Aligned_cols=22  Identities=0%  Similarity=-0.236  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+-
T Consensus        33 ~~~iiG~nGsG-KSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSG-KSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCc-HHHHHHHHhcC
Confidence            47899999999 99999998754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=92.88  E-value=0.029  Score=45.84  Aligned_cols=64  Identities=17%  Similarity=0.136  Sum_probs=37.5

Q ss_pred             EEEEEEEeCCCCccccc-ccc-----ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCcc
Q 028595           52 TVNLGLWDTAGQEDYNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLR  122 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~~  122 (207)
                      .+.+.|+||||...... +..     .....++.+++|.|.+.......    ....+..   ..|+ -+|.||.|..
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~----~~~~f~~---~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN----TAKAFNE---ALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH----HHHHHHH---HSCCCCEEEECTTSS
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH----HHHHHhc---cCCCeEEEEecCCCC
Confidence            36788999999644321 111     11336789999999875433222    2223322   3443 4789999974

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=92.84  E-value=0.013  Score=42.71  Aligned_cols=23  Identities=9%  Similarity=-0.214  Sum_probs=19.8

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..|+++|.+++| ||||++.+.+.
T Consensus        23 ~~v~I~G~sGsG-KSTl~~~l~~~   45 (208)
T 3c8u_A           23 QLVALSGAPGSG-KSTLSNPLAAA   45 (208)
T ss_dssp             EEEEEECCTTSC-THHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHHH
Confidence            468999999999 99999988643

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=92.80  E-value=0.016  Score=42.92  Aligned_cols=22  Identities=5%  Similarity=-0.212  Sum_probs=19.3

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+-
T Consensus        32 ~~~iiG~nGsG-KSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSG-KSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSC-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            47899999999 99999998754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=92.67  E-value=0.018  Score=40.83  Aligned_cols=26  Identities=8%  Similarity=-0.123  Sum_probs=21.0

Q ss_pred             CccceeEEEEecccccceeeeeeeccC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      |.....|+++|.+++| |||+.+.|..
T Consensus         1 m~~g~~I~l~G~~GsG-KST~~~~La~   26 (186)
T 3cm0_A            1 MDVGQAVIFLGPPGAG-KGTQASRLAQ   26 (186)
T ss_dssp             --CEEEEEEECCTTSC-HHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCC-HHHHHHHHHH
Confidence            5555679999999999 9999999863

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=92.66  E-value=0.017  Score=40.28  Aligned_cols=22  Identities=5%  Similarity=-0.287  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|++.|.+++| |||+.+.|..
T Consensus         2 ~~i~l~G~~GsG-KsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCF-KSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSS-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            368999999999 9999999863

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=92.57  E-value=0.42  Score=34.62  Aligned_cols=67  Identities=16%  Similarity=0.074  Sum_probs=46.7

Q ss_pred             EEEEEEEeCCCC-ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595           52 TVNLGLWDTAGQ-EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  123 (207)
Q Consensus        52 ~~~l~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~  123 (207)
                      .+.+.++|+|+. ...  .....+..+|.+|++... +..+...+ ..+++.+.... +.++.+|.|+.|...
T Consensus        67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~-~~~~~~l~~~~-~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDAL-MLTIETLQKLG-NNRFRILLTIIPPYP  134 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHH-HHHHHHHHHTC-SSSEEEEECSBCCTT
T ss_pred             cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHH-HHHHHHHHhcc-CCCEEEEEEecCCcc
Confidence            366789999886 332  234566789999999885 45666666 56666666532 567889999998643

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=92.57  E-value=0.015  Score=42.17  Aligned_cols=23  Identities=13%  Similarity=-0.067  Sum_probs=19.7

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .-|+++|.+++| ||||++.|.+.
T Consensus        20 ~~ivl~GPSGaG-KsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVG-RSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHHHH
T ss_pred             CEEEEECcCCCC-HHHHHHHHHhh
Confidence            457899999999 99999999754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=92.56  E-value=0.018  Score=40.92  Aligned_cols=26  Identities=8%  Similarity=-0.083  Sum_probs=20.8

Q ss_pred             ccceeEEEEecccccceeeeeeeccCC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ....-++++|.+++| ||||++++...
T Consensus         4 ~~~~~i~i~G~sGsG-KTTl~~~l~~~   29 (174)
T 1np6_A            4 TMIPLLAFAAWSGTG-KTTLLKKLIPA   29 (174)
T ss_dssp             -CCCEEEEECCTTSC-HHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCC-HHHHHHHHHHh
Confidence            334568899999999 99999998753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=92.47  E-value=0.023  Score=40.41  Aligned_cols=26  Identities=8%  Similarity=-0.118  Sum_probs=21.8

Q ss_pred             CccceeEEEEecccccceeeeeeeccC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      |.....|++.|.+++| |||+.+.|..
T Consensus         2 ~~~~~~I~l~G~~GsG-KST~~~~L~~   27 (193)
T 2rhm_A            2 MQTPALIIVTGHPATG-KTTLSQALAT   27 (193)
T ss_dssp             CSCCEEEEEEESTTSS-HHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCC-HHHHHHHHHH
Confidence            4556679999999999 9999999863

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=92.39  E-value=0.022  Score=41.65  Aligned_cols=26  Identities=12%  Similarity=-0.167  Sum_probs=22.0

Q ss_pred             CccceeEEEEecccccceeeeeeeccC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      |.....|++.|.+++| |||+.+.|..
T Consensus         1 M~~~~~I~i~G~~GSG-KST~~~~L~~   26 (218)
T 1vht_A            1 MSLRYIVALTGGIGSG-KSTVANAFAD   26 (218)
T ss_dssp             -CCCEEEEEECCTTSC-HHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCC-HHHHHHHHHH
Confidence            6666789999999999 9999999864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=92.38  E-value=0.02  Score=41.34  Aligned_cols=25  Identities=0%  Similarity=-0.223  Sum_probs=20.6

Q ss_pred             ccceeEEEEecccccceeeeeeeccC
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .....|+++|.+++| |||+.+.+..
T Consensus        23 ~~~~~i~l~G~~GsG-KsTl~~~La~   47 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAG-KTTLGKAFAR   47 (199)
T ss_dssp             -CCCEEEEECCTTSC-HHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCC-HHHHHHHHHH
Confidence            345579999999999 9999998863

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=92.37  E-value=0.019  Score=43.61  Aligned_cols=22  Identities=0%  Similarity=-0.105  Sum_probs=19.3

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+-
T Consensus        34 ~~~liG~nGsG-KSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSG-KSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            46899999999 99999998765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=92.37  E-value=0.019  Score=44.50  Aligned_cols=23  Identities=4%  Similarity=-0.252  Sum_probs=20.1

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||+|.+.+..
T Consensus       171 iv~l~G~sG~G-KSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVG-KSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSS-HHHHHHHHSTTC
T ss_pred             eEEEECCCCCc-HHHHHHHhcccc
Confidence            46899999999 999999998654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=92.34  E-value=0.018  Score=43.11  Aligned_cols=22  Identities=14%  Similarity=0.024  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+.+-
T Consensus        26 ~~~liG~nGsG-KSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAG-KSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            47899999999 99999999765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=92.32  E-value=0.019  Score=42.22  Aligned_cols=22  Identities=5%  Similarity=-0.127  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        37 ~~~iiG~NGsG-KSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIG-KTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            47899999999 99999998765

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=92.27  E-value=0.02  Score=42.81  Aligned_cols=22  Identities=5%  Similarity=-0.144  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        33 ~~~i~G~nGsG-KSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCG-KSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSS-HHHHHHHHTTC
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            57899999999 99999998765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.26  E-value=0.024  Score=41.02  Aligned_cols=22  Identities=0%  Similarity=-0.346  Sum_probs=20.1

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|+++|++++| |||+.+.|.+
T Consensus         3 ~~i~l~G~~GsG-KST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSG-KTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSC-HHHHHHHHHT
T ss_pred             cEEEEECCCCCC-HHHHHHHHHH
Confidence            568999999999 9999999976

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=92.25  E-value=0.014  Score=40.73  Aligned_cols=23  Identities=0%  Similarity=-0.389  Sum_probs=19.8

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|..++| ||||++.+.+.-
T Consensus        35 ~v~L~G~nGaG-KTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAG-KTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHHHT
T ss_pred             EEEEECCCCCC-HHHHHHHHHHhC
Confidence            47899999999 999999987653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=92.18  E-value=0.021  Score=43.25  Aligned_cols=23  Identities=4%  Similarity=-0.167  Sum_probs=19.8

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|..++| ||||++.+.+-.
T Consensus        35 ~~~liG~nGsG-KSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSG-KSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSS-HHHHHHHHTTSS
T ss_pred             EEEEECCCCCC-HHHHHHHHhCCC
Confidence            47899999999 999999987653

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=92.16  E-value=0.023  Score=41.02  Aligned_cols=22  Identities=0%  Similarity=-0.254  Sum_probs=19.9

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .+|+++|.+++| |||+.+.|.+
T Consensus         2 ~~i~i~G~~GsG-KSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCG-KSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSS-HHHHHHHHHH
T ss_pred             eEEEEECCCCcC-HHHHHHHHHH
Confidence            479999999999 9999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=92.15  E-value=0.016  Score=42.07  Aligned_cols=24  Identities=4%  Similarity=-0.197  Sum_probs=20.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ...|+++|+.++| ||||++.+.+.
T Consensus         6 ~~~i~i~G~~GsG-KSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASG-KTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSS-HHHHHHHHHHH
T ss_pred             cEEEEEECCCCCC-HHHHHHHHHHH
Confidence            3468999999999 99999988653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=92.14  E-value=0.021  Score=43.72  Aligned_cols=22  Identities=18%  Similarity=-0.038  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+-
T Consensus        36 ~~~iiGpnGsG-KSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVG-KSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHHcC
Confidence            47899999999 99999998764

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=92.00  E-value=0.11  Score=42.67  Aligned_cols=59  Identities=17%  Similarity=0.057  Sum_probs=36.3

Q ss_pred             eEEEEecccccceeeeeeecc-------C-----------CCCCc---cccCceeeeeee-EEEE---CCeEEEEEEEeC
Q 028595            6 KLACLFATQVTSFLLYVLSVS-------G-----------RSSIW---DYIPTVFDNFSA-NVVA---EGTTVNLGLWDT   60 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~-------~-----------~~~~~---~~~~t~~~~~~~-~~~~---~~~~~~l~i~D~   60 (207)
                      =|.|+|...+| ||+|+|.++       +           ..|..   ...-|.|..... .+.+   +|..+.+.+.||
T Consensus        69 vvsv~G~~~~g-ks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT  147 (457)
T 4ido_A           69 AVSVAGAFRKG-KSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT  147 (457)
T ss_dssp             EEEEEEBTTSS-HHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred             EEEEECCCCCc-hhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence            35689999999 999999553       1           22221   112244443322 2222   667889999999


Q ss_pred             CCCcc
Q 028595           61 AGQED   65 (207)
Q Consensus        61 ~G~~~   65 (207)
                      .|...
T Consensus       148 EG~~d  152 (457)
T 4ido_A          148 QGTFD  152 (457)
T ss_dssp             CCBTC
T ss_pred             cCCCC
Confidence            99543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=91.99  E-value=0.02  Score=41.18  Aligned_cols=22  Identities=0%  Similarity=-0.200  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -|+++|++++| ||||+++|...
T Consensus         3 pIVi~GPSG~G-K~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTG-KSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHHh
Confidence            48999999999 99999998744

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=91.98  E-value=0.023  Score=43.29  Aligned_cols=22  Identities=9%  Similarity=-0.043  Sum_probs=19.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+-
T Consensus        39 ~~~liG~nGsG-KSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAG-KSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSC-HHHHHHHHTSS
T ss_pred             EEEEECCCCCc-HHHHHHHHhcC
Confidence            47899999999 99999999765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=91.97  E-value=0.025  Score=42.44  Aligned_cols=22  Identities=5%  Similarity=-0.321  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        30 ~~~i~G~nGsG-KSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGG-KSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            57899999999 99999998765

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=91.95  E-value=0.023  Score=43.22  Aligned_cols=22  Identities=0%  Similarity=-0.138  Sum_probs=19.3

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+.+-
T Consensus        52 i~~liG~NGsG-KSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSG-KSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEEcCCCCc-HHHHHHHHHcC
Confidence            47899999999 99999998765

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=91.95  E-value=0.017  Score=41.67  Aligned_cols=23  Identities=4%  Similarity=-0.305  Sum_probs=19.9

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..|+++|.+++| |||+++.+.+.
T Consensus         7 ~~i~l~G~~GsG-KSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVG-KGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSC-HHHHHHHHHHC
T ss_pred             CEEEEECCCCCC-HHHHHHHHHHh
Confidence            368999999999 99999998754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=91.93  E-value=0.025  Score=42.54  Aligned_cols=22  Identities=0%  Similarity=-0.253  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|.+++| ||||++.+.+-
T Consensus        37 ~~~i~G~nGsG-KSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSG-KSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            57899999999 99999998765

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.91  E-value=0.023  Score=42.51  Aligned_cols=22  Identities=9%  Similarity=-0.014  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+.+-
T Consensus        34 ~~~l~G~nGsG-KSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAG-KTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            47899999999 99999998765

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.88  E-value=0.023  Score=42.97  Aligned_cols=22  Identities=5%  Similarity=-0.189  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+.+-
T Consensus        43 i~~l~G~NGsG-KSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAG-KTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            47899999999 99999998765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=91.88  E-value=0.027  Score=40.98  Aligned_cols=23  Identities=9%  Similarity=-0.297  Sum_probs=19.6

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .-|+++|++++| ||||++.|...
T Consensus         9 ~~i~l~GpsGsG-KsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVG-KGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSC-HHHHHHHHHHS
T ss_pred             cEEEEECcCCCC-HHHHHHHHHhh
Confidence            347889999999 99999999754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=91.80  E-value=0.024  Score=42.70  Aligned_cols=22  Identities=9%  Similarity=-0.053  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        28 ~~~liG~NGsG-KSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAG-KSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCc-HHHHHHHHhCC
Confidence            47899999999 99999998765

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=91.80  E-value=0.03  Score=41.89  Aligned_cols=26  Identities=12%  Similarity=-0.160  Sum_probs=21.9

Q ss_pred             CccceeEEEEecccccceeeeeeeccC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      |.....|++.|++++| |||+.+.|..
T Consensus        26 ~~~~~~I~l~G~~GsG-KsT~a~~L~~   51 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSG-KGTQSLNLKK   51 (243)
T ss_dssp             TSCCEEEEEECCTTSS-HHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCC-HHHHHHHHHH
Confidence            3445689999999999 9999999863

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=91.79  E-value=0.028  Score=39.92  Aligned_cols=22  Identities=9%  Similarity=-0.269  Sum_probs=19.4

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|++.|.+++| |||+.+.|..
T Consensus         2 ~~I~i~G~~GsG-KsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVG-KSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSC-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999998864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=91.79  E-value=0.024  Score=42.08  Aligned_cols=22  Identities=18%  Similarity=0.073  Sum_probs=19.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        36 ~~~i~G~nGsG-KSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAG-KTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            57899999999 99999998765

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=91.74  E-value=0.028  Score=42.47  Aligned_cols=26  Identities=8%  Similarity=-0.104  Sum_probs=21.3

Q ss_pred             CccceeEEEEecccccceeeeeeeccC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      |..+..|++.|.+++| |||+.+.|..
T Consensus         1 M~~~~lIvl~G~pGSG-KSTla~~La~   26 (260)
T 3a4m_A            1 MGDIMLIILTGLPGVG-KSTFSKNLAK   26 (260)
T ss_dssp             --CCEEEEEECCTTSS-HHHHHHHHHH
T ss_pred             CCCCEEEEEEcCCCCC-HHHHHHHHHH
Confidence            6667789999999999 9999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=91.69  E-value=0.025  Score=43.13  Aligned_cols=22  Identities=5%  Similarity=-0.278  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|.+++| ||||++.+.+-
T Consensus        47 ~~~i~G~nGsG-KSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSG-KSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            57899999999 99999998765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=91.64  E-value=0.032  Score=40.34  Aligned_cols=23  Identities=0%  Similarity=-0.422  Sum_probs=20.1

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ...|++.|.+++| |||+.+.|..
T Consensus        10 ~~~I~l~G~~GsG-KST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSG-KSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSS-HHHHHHHHHH
T ss_pred             CCEEEEEcCCCCC-HHHHHHHHHH
Confidence            4579999999999 9999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=91.61  E-value=0.026  Score=42.78  Aligned_cols=22  Identities=9%  Similarity=-0.316  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        48 ~~~i~G~nGsG-KSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSG-KSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhcc
Confidence            57899999999 99999999765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=91.60  E-value=0.026  Score=43.26  Aligned_cols=22  Identities=5%  Similarity=-0.227  Sum_probs=19.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        49 ~~~liG~NGsG-KSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAG-KTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCc-HHHHHHHHhCC
Confidence            57899999999 99999998765

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=91.55  E-value=0.021  Score=41.76  Aligned_cols=22  Identities=5%  Similarity=-0.164  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        24 ~~~liG~nGsG-KSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSG-KTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSS-TTHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHhcC
Confidence            47899999999 99999999764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=91.54  E-value=0.028  Score=39.80  Aligned_cols=22  Identities=5%  Similarity=-0.176  Sum_probs=19.6

Q ss_pred             ceeEEEEecccccceeeeeeecc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      ...|+++|.+++| |||+.+.|.
T Consensus         5 ~~~i~l~G~~GsG-Kst~a~~La   26 (185)
T 3trf_A            5 LTNIYLIGLMGAG-KTSVGSQLA   26 (185)
T ss_dssp             CCEEEEECSTTSS-HHHHHHHHH
T ss_pred             CCEEEEECCCCCC-HHHHHHHHH
Confidence            4578999999999 999999885

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=91.52  E-value=0.026  Score=42.98  Aligned_cols=22  Identities=14%  Similarity=-0.000  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        48 ~~~l~G~NGsG-KSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSG-KSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTC
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            47899999999 99999999875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=91.49  E-value=0.032  Score=40.43  Aligned_cols=24  Identities=4%  Similarity=-0.327  Sum_probs=20.5

Q ss_pred             cceeEEEEecccccceeeeeeeccC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ....|++.|.+++| |||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsG-KsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAG-KSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSS-HHHHHHHHHH
T ss_pred             CCcEEEEECCCCCC-HHHHHHHHHH
Confidence            34579999999999 9999999864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=91.49  E-value=0.028  Score=41.94  Aligned_cols=21  Identities=5%  Similarity=-0.192  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeecc
Q 028595            5 AKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~   26 (207)
                      ..|+++|.+++| ||||++.+.
T Consensus        28 ~~i~l~G~~GsG-KSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSG-KGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHH
T ss_pred             cEEEEECCCCCC-HHHHHHHHH
Confidence            468999999999 999999998

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=91.47  E-value=0.026  Score=42.46  Aligned_cols=22  Identities=9%  Similarity=-0.164  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+.+-
T Consensus        31 ~~~l~G~nGsG-KSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAG-KSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHTC
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            47899999999 99999999875

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=91.44  E-value=0.02  Score=41.30  Aligned_cols=22  Identities=9%  Similarity=-0.168  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|.+++| ||||++.+.+.
T Consensus         3 ~i~i~G~nG~G-KTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVG-KTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSC-HHHHHHHHHHH
T ss_pred             EEEEECCCCCh-HHHHHHHHHhh
Confidence            57999999999 99999998753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=91.41  E-value=0.028  Score=42.40  Aligned_cols=22  Identities=18%  Similarity=-0.085  Sum_probs=19.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        33 ~~~l~G~nGsG-KSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCG-KSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            47899999999 99999998765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=91.40  E-value=0.026  Score=40.32  Aligned_cols=24  Identities=0%  Similarity=-0.323  Sum_probs=20.5

Q ss_pred             cceeEEEEecccccceeeeeeeccC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ....|++.|.+++| |||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsG-KsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSG-KGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSS-HHHHHHHHHH
T ss_pred             CCCEEEEECCCCCC-HHHHHHHHHH
Confidence            34579999999999 9999998863

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=91.37  E-value=0.029  Score=42.69  Aligned_cols=22  Identities=18%  Similarity=-0.099  Sum_probs=19.3

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+.+-
T Consensus        35 ~~~liG~nGsG-KSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSG-KSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCc-HHHHHHHHhCC
Confidence            47899999999 99999998765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=91.34  E-value=0.032  Score=41.10  Aligned_cols=22  Identities=9%  Similarity=-0.126  Sum_probs=19.7

Q ss_pred             ceeEEEEecccccceeeeeeecc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      ...|+++|.+++| |||+.+.|.
T Consensus         7 ~~~I~l~G~~GsG-KsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSG-KGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSS-HHHHHHHHH
T ss_pred             CcEEEEECCCCCC-HHHHHHHHH
Confidence            3679999999999 999999886

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.24  E-value=0.028  Score=43.61  Aligned_cols=20  Identities=5%  Similarity=-0.240  Sum_probs=18.4

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      -++++|.+++| ||||+|.+.
T Consensus       167 i~~l~G~sG~G-KSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVG-KSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSS-HHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHH
Confidence            46899999999 999999998

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=91.19  E-value=0.034  Score=41.14  Aligned_cols=23  Identities=4%  Similarity=-0.240  Sum_probs=20.0

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .-|++.|..++| ||||++.+.+.
T Consensus        21 ~~i~i~G~~GsG-KSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSG-KTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSC-HHHHHHTTGGG
T ss_pred             eEEEEECCCCCC-HHHHHHHHHhc
Confidence            358999999999 99999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=91.05  E-value=0.024  Score=40.95  Aligned_cols=22  Identities=5%  Similarity=-0.079  Sum_probs=18.9

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|+++|.+++| ||||++.+.+
T Consensus        30 ~~i~l~G~~GsG-KSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSG-KTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSC-HHHHHHHHHH
T ss_pred             cEEEEECCCCCC-HHHHHHHHHH
Confidence            358899999999 9999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=91.05  E-value=0.033  Score=40.56  Aligned_cols=20  Identities=0%  Similarity=-0.250  Sum_probs=18.6

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      +|++.|++++| |||+.+.|.
T Consensus         2 ~I~l~G~~GsG-KsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAG-KGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSS-HHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHH
Confidence            69999999999 999999985

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=91.02  E-value=0.03  Score=38.93  Aligned_cols=19  Identities=0%  Similarity=-0.291  Sum_probs=17.6

Q ss_pred             eEEEEecccccceeeeeeec
Q 028595            6 KLACLFATQVTSFLLYVLSV   25 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l   25 (207)
                      -|++.|.+++| |||+.+.|
T Consensus         3 ~I~l~G~~GsG-KsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSG-KSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSC-HHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHH
Confidence            58899999999 99999998

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=90.92  E-value=0.025  Score=44.99  Aligned_cols=24  Identities=13%  Similarity=-0.036  Sum_probs=21.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..+++++|.+++| ||||++.+.+.
T Consensus       170 g~k~~IvG~nGsG-KSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSG-KSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSH-HHHHHHHHHHH
T ss_pred             hCeEEEECCCCCC-HHHHHHHHHHH
Confidence            4689999999999 99999998754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=90.90  E-value=0.034  Score=39.84  Aligned_cols=21  Identities=14%  Similarity=-0.037  Sum_probs=18.9

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .|++.|.+++| |||+.+.|..
T Consensus         2 ~I~i~G~~GsG-KsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAG-KSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSC-HHHHHHHHHH
T ss_pred             EEEEECCCccC-HHHHHHHHHH
Confidence            58999999999 9999998864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=90.89  E-value=0.037  Score=42.04  Aligned_cols=22  Identities=18%  Similarity=0.064  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        32 ~~~i~G~NGsG-KSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSG-KTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            57899999999 99999998765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=90.82  E-value=0.037  Score=43.16  Aligned_cols=27  Identities=7%  Similarity=-0.175  Sum_probs=21.1

Q ss_pred             CccceeEEEEecccccceeeeeeeccCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      |...--++++|..++| ||||++.+.+.
T Consensus         1 m~~i~v~~i~G~~GaG-KTTll~~l~~~   27 (318)
T 1nij_A            1 MNPIAVTLLTGFLGAG-KTTLLRHILNE   27 (318)
T ss_dssp             -CCEEEEEEEESSSSS-CHHHHHHHHHS
T ss_pred             CCcccEEEEEecCCCC-HHHHHHHHHhh
Confidence            5555567888999999 99999999854

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=90.80  E-value=0.036  Score=40.39  Aligned_cols=21  Identities=5%  Similarity=-0.279  Sum_probs=18.9

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      +|++.|++++| |||+.+.|..
T Consensus         2 ~I~l~G~~GsG-KsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAG-KGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            69999999999 9999998853

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=90.74  E-value=0.033  Score=39.65  Aligned_cols=21  Identities=5%  Similarity=-0.247  Sum_probs=18.4

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -++++|.+++| ||||++.+.+
T Consensus         4 ii~l~G~~GaG-KSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVG-KSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCc-HHHHHHHHhc
Confidence            46889999999 9999999964

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=90.74  E-value=0.036  Score=44.08  Aligned_cols=23  Identities=13%  Similarity=-0.024  Sum_probs=20.0

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        32 ~~~llGpsGsG-KSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCG-KTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHTSS
T ss_pred             EEEEECCCCch-HHHHHHHHhcCC
Confidence            46899999999 999999998754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=90.63  E-value=0.035  Score=40.04  Aligned_cols=22  Identities=0%  Similarity=-0.158  Sum_probs=19.1

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|+++|.+++| |||+.+.|..
T Consensus        19 ~~I~l~G~~GsG-KSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSG-KSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSC-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            368999999999 9999998864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=90.52  E-value=0.029  Score=43.73  Aligned_cols=22  Identities=5%  Similarity=-0.201  Sum_probs=19.0

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|+++|.+++| ||||++.+.+
T Consensus        91 ~ivgI~G~sGsG-KSTL~~~L~g  112 (312)
T 3aez_A           91 FIIGVAGSVAVG-KSTTARVLQA  112 (312)
T ss_dssp             EEEEEECCTTSC-HHHHHHHHHH
T ss_pred             EEEEEECCCCch-HHHHHHHHHh
Confidence            357899999999 9999999865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=90.51  E-value=0.044  Score=42.26  Aligned_cols=22  Identities=18%  Similarity=0.073  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        66 ~~~i~G~NGsG-KSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAG-KTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCc-HHHHHHHHhcC
Confidence            57899999999 99999998765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=90.45  E-value=0.033  Score=43.30  Aligned_cols=22  Identities=14%  Similarity=-0.069  Sum_probs=19.5

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -.++++|.+++| ||||++.+.+
T Consensus       127 e~vaIvGpsGsG-KSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTG-KSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSS-HHHHHHHHHH
T ss_pred             CEEEEECCCCCc-HHHHHHHHhh
Confidence            468999999999 9999999864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=90.42  E-value=0.037  Score=38.84  Aligned_cols=22  Identities=0%  Similarity=-0.179  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|++.|.+++| |||+.+.|..
T Consensus         3 ~~I~i~G~~GsG-KST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSG-KSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSS-HHHHHHHHHH
T ss_pred             eEEEEecCCCCC-HHHHHHHHHh
Confidence            358899999999 9999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=90.38  E-value=0.025  Score=40.09  Aligned_cols=23  Identities=4%  Similarity=-0.140  Sum_probs=19.8

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..++++|.+++| ||||++.+.+-
T Consensus         3 ~~v~IvG~SGsG-KSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSG-KTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHH-HHHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHHH
Confidence            468999999999 99999998643

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=90.21  E-value=0.031  Score=40.54  Aligned_cols=21  Identities=19%  Similarity=-0.051  Sum_probs=18.5

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -|++.|.+++| |||+++.|..
T Consensus         2 ~I~i~G~~GsG-KsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAG-KRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEE-HHHHHHHHHH
T ss_pred             EEEEEcCCCCC-HHHHHHHHHH
Confidence            47999999999 9999998853

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=90.17  E-value=0.04  Score=38.66  Aligned_cols=22  Identities=5%  Similarity=-0.218  Sum_probs=19.0

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|+++|.+++| |||+++.+.+
T Consensus         9 ~~i~l~G~~GsG-KSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSG-KSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSC-HHHHHHHHHH
T ss_pred             cEEEEEcCCCCC-HHHHHHHHHH
Confidence            468999999999 9999998754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=90.16  E-value=0.038  Score=42.93  Aligned_cols=23  Identities=9%  Similarity=-0.198  Sum_probs=19.9

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|..++| ||||++.+.+-
T Consensus        81 e~vaivG~sGsG-KSTLl~ll~gl  103 (306)
T 3nh6_A           81 QTLALVGPSGAG-KSTILRLLFRF  103 (306)
T ss_dssp             CEEEEESSSCHH-HHHHHHHHTTS
T ss_pred             CEEEEECCCCch-HHHHHHHHHcC
Confidence            368999999999 99999988654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=90.13  E-value=0.042  Score=43.64  Aligned_cols=23  Identities=9%  Similarity=-0.047  Sum_probs=19.9

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        43 ~~~llGpnGsG-KSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSG-KTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHTSS
T ss_pred             EEEEECCCCCc-HHHHHHHHhCCC
Confidence            47899999999 999999997653

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=90.11  E-value=0.046  Score=38.57  Aligned_cols=22  Identities=9%  Similarity=-0.111  Sum_probs=19.4

Q ss_pred             ceeEEEEecccccceeeeeeecc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      ...|++.|.+++| |||+.+.+.
T Consensus        11 ~~~i~i~G~~GsG-Kst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVG-KTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSS-HHHHHHHHH
T ss_pred             CCeEEEEeCCCCC-HHHHHHHHH
Confidence            3468999999999 999999886

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=90.11  E-value=0.034  Score=40.69  Aligned_cols=22  Identities=0%  Similarity=-0.307  Sum_probs=19.2

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+++.
T Consensus        27 ~~~l~G~nGsG-KSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSG-KTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHHH
Confidence            47899999999 99999999764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=90.10  E-value=0.055  Score=38.34  Aligned_cols=22  Identities=5%  Similarity=-0.241  Sum_probs=19.1

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|++.|.+++| |||+.+.|..
T Consensus         7 ~~I~l~G~~GsG-KsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSG-KGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSS-HHHHHHHHHH
T ss_pred             cEEEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999998863

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=90.10  E-value=0.033  Score=42.24  Aligned_cols=23  Identities=9%  Similarity=-0.188  Sum_probs=19.6

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|..++| ||||++.+.+-
T Consensus        26 ~~v~i~Gp~GsG-KSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSG-KSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCS-HHHHHHHHHHH
T ss_pred             CEEEEECCCCcc-HHHHHHHHHHh
Confidence            358899999999 99999998753

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=90.02  E-value=0.034  Score=41.56  Aligned_cols=22  Identities=5%  Similarity=-0.259  Sum_probs=19.4

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|+++|+.++| ||||++.+.+
T Consensus        26 ~iigI~G~~GsG-KSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASG-KSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSS-HHHHHHHHHH
T ss_pred             EEEEEECCCCCC-HHHHHHHHHH
Confidence            458999999999 9999999865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=90.00  E-value=0.059  Score=38.96  Aligned_cols=24  Identities=4%  Similarity=-0.207  Sum_probs=20.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ...|+++|++++| |||+++.|.+.
T Consensus        21 ~~~i~i~G~~GsG-KSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSG-KTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSS-HHHHHHHHHTT
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHHh
Confidence            4568999999999 99999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=89.97  E-value=0.033  Score=39.80  Aligned_cols=23  Identities=0%  Similarity=-0.328  Sum_probs=19.9

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ...|++.|.+++| |||+.+.|..
T Consensus        12 ~~~I~l~G~~GsG-KsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSG-KGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSS-HHHHHHHHHH
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHH
Confidence            3579999999999 9999988864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=89.91  E-value=0.045  Score=43.55  Aligned_cols=23  Identities=17%  Similarity=-0.002  Sum_probs=19.9

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        31 ~~~llGpnGsG-KSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCG-KTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHTSS
T ss_pred             EEEEEcCCCch-HHHHHHHHHCCC
Confidence            47899999999 999999998653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=89.91  E-value=0.045  Score=43.60  Aligned_cols=23  Identities=13%  Similarity=0.017  Sum_probs=20.0

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        31 ~~~llGpnGsG-KSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSG-KSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred             EEEEECCCCch-HHHHHHHHhcCC
Confidence            46899999999 999999998653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.78  E-value=0.098  Score=41.02  Aligned_cols=20  Identities=5%  Similarity=-0.179  Sum_probs=18.4

Q ss_pred             EEEEecccccceeeeeeeccC
Q 028595            7 LACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~   27 (207)
                      +++.|.+++| |||+++.+.+
T Consensus        39 ~ll~Gp~G~G-KTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTG-KKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSS-HHHHHHTHHH
T ss_pred             EEEECCCCCC-HHHHHHHHHH
Confidence            8999999999 9999998865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=89.73  E-value=0.057  Score=38.91  Aligned_cols=22  Identities=5%  Similarity=-0.300  Sum_probs=19.5

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|++.|.+++| |||+.+.|..
T Consensus         5 ~~I~i~G~~GsG-KsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSG-KSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSS-HHHHHHHHHH
T ss_pred             eEEEEEcCCCCC-HHHHHHHHHH
Confidence            478999999999 9999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=89.71  E-value=0.048  Score=43.62  Aligned_cols=23  Identities=9%  Similarity=-0.071  Sum_probs=19.9

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        31 ~~~llGpnGsG-KSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCG-KTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHTSS
T ss_pred             EEEEECCCCcH-HHHHHHHHHcCC
Confidence            46899999999 999999998653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=89.67  E-value=0.048  Score=43.71  Aligned_cols=23  Identities=4%  Similarity=-0.078  Sum_probs=20.0

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        31 ~~~llGpsGsG-KSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCG-KSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred             EEEEEcCCCch-HHHHHHHHHcCC
Confidence            46899999999 999999998654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=89.65  E-value=0.053  Score=39.48  Aligned_cols=21  Identities=10%  Similarity=-0.189  Sum_probs=18.9

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      +|++.|.+++| |||+.+.|..
T Consensus         2 ~I~l~G~~GsG-KsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAG-KGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            68999999999 9999998864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=89.61  E-value=0.049  Score=43.55  Aligned_cols=23  Identities=13%  Similarity=-0.041  Sum_probs=19.9

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        39 ~~~llGpnGsG-KSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCG-KTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred             EEEEECCCCCh-HHHHHHHHHcCC
Confidence            47899999999 999999987653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=89.48  E-value=0.042  Score=43.53  Aligned_cols=23  Identities=17%  Similarity=0.108  Sum_probs=20.0

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        28 ~~~llGpnGsG-KSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAG-KTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHH-HHHHHHHHHTSS
T ss_pred             EEEEECCCCcc-HHHHHHHHHcCC
Confidence            47899999999 999999997653

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=89.48  E-value=0.53  Score=35.25  Aligned_cols=65  Identities=12%  Similarity=0.105  Sum_probs=47.0

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCC
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD  120 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D  120 (207)
                      .+.+.|+|+|+.-.  ......+..+|.+|++...+ ..+...+ ..+...+.....+.++.+|.|+.+
T Consensus       144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESL-DLFNFFVRKLNLFLPIFLIITRFK  208 (267)
T ss_dssp             TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHH-HHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred             CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHH-HHHHHHHHHHhccCCEEEEEeccc
Confidence            36678999987542  23345566799999999874 4566666 677777777666778889999994

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=89.42  E-value=0.051  Score=43.29  Aligned_cols=23  Identities=9%  Similarity=-0.141  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        56 i~~IiGpnGaG-KSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAG-KSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred             EEEEEcCCCch-HHHHHHHHhcCC
Confidence            46899999999 999999987653

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=89.41  E-value=1.8  Score=31.63  Aligned_cols=67  Identities=10%  Similarity=0.091  Sum_probs=48.0

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcc
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLR  122 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~  122 (207)
                      .+.+.|+|+|+...  ......+..+|.++++... +..+...+ ..+++.+.... +...+.+|.|+.+..
T Consensus       118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~N~~~~~  185 (245)
T 3ea0_A          118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTP-SLQSLRRA-GQLLKLCKEFEKPISRIEIILNRADTN  185 (245)
T ss_dssp             HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECS-SHHHHHHH-HHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred             hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecC-cHHHHHHH-HHHHHHHHHhCCCccceEEEEecCCCC
Confidence            36788999987542  2334556779999999885 46777777 67777777654 245678999999854

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=89.40  E-value=0.056  Score=38.24  Aligned_cols=22  Identities=5%  Similarity=-0.275  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|++.|.+++| |||+.+.|..
T Consensus         4 ~~I~i~G~~GsG-KsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVG-STTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSC-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999998854

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=89.35  E-value=0.065  Score=38.06  Aligned_cols=24  Identities=0%  Similarity=-0.242  Sum_probs=20.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ...|+++|.+++| |||+.+.|...
T Consensus        10 ~~~I~l~G~~GsG-KSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTG-KTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSS-HHHHHHHHHHH
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHHh
Confidence            4579999999999 99999988654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=89.20  E-value=0.045  Score=42.50  Aligned_cols=22  Identities=5%  Similarity=-0.207  Sum_probs=19.4

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|+++|++++| ||||++.+.+
T Consensus        81 ~iigI~G~~GsG-KSTl~~~L~~  102 (308)
T 1sq5_A           81 YIISIAGSVAVG-KSTTARVLQA  102 (308)
T ss_dssp             EEEEEEECTTSS-HHHHHHHHHH
T ss_pred             EEEEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999999865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=89.06  E-value=0.065  Score=42.06  Aligned_cols=23  Identities=13%  Similarity=-0.035  Sum_probs=20.1

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|..++| ||||++.+.+-
T Consensus       172 ~~v~i~G~~GsG-KTTll~~l~g~  194 (330)
T 2pt7_A          172 KNVIVCGGTGSG-KTTYIKSIMEF  194 (330)
T ss_dssp             CCEEEEESTTSC-HHHHHHHGGGG
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCC
Confidence            368999999999 99999999754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=89.06  E-value=0.042  Score=43.59  Aligned_cols=23  Identities=9%  Similarity=0.127  Sum_probs=19.9

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        33 ~~~llGpnGsG-KSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAG-KTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHH-HHHHHHHHHTSS
T ss_pred             EEEEECCCCCc-HHHHHHHHhCCC
Confidence            47899999999 999999998653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=89.04  E-value=0.05  Score=37.48  Aligned_cols=22  Identities=0%  Similarity=-0.274  Sum_probs=19.0

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||+|++.+.+.
T Consensus        38 ~~~l~G~~G~G-KTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAG-KSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTT-TCHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHHH
Confidence            47889999999 99999998753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=88.99  E-value=0.037  Score=39.10  Aligned_cols=23  Identities=9%  Similarity=-0.083  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..++++|.+++| ||+|++.+.+.
T Consensus        39 ~~~~l~G~~G~G-KTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVG-KTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSS-HHHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHHHH
Confidence            358899999999 99999988643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=88.96  E-value=0.056  Score=37.92  Aligned_cols=21  Identities=5%  Similarity=-0.230  Sum_probs=18.6

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -|++.|.+++| |||+.+.|..
T Consensus         5 ~i~l~G~~GsG-KST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAG-KSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            58899999999 9999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=88.89  E-value=0.074  Score=37.41  Aligned_cols=22  Identities=5%  Similarity=-0.325  Sum_probs=15.3

Q ss_pred             ceeEEEEecccccceeeeeeecc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      ...|++.|.+++| |||+.+.|.
T Consensus         5 ~~~I~l~G~~GsG-KST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVG-KTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC-----CHHHHHHH
T ss_pred             CeEEEEECCCCCC-HHHHHHHHH
Confidence            3468999999999 999999985

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=88.89  E-value=0.072  Score=42.41  Aligned_cols=22  Identities=18%  Similarity=0.075  Sum_probs=19.7

Q ss_pred             cceeEEEEecccccceeeeeeec
Q 028595            3 LLAKLACLFATQVTSFLLYVLSV   25 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l   25 (207)
                      ...||+++|..++| ||||++++
T Consensus        32 ~~~killlG~~~SG-KST~~kq~   53 (362)
T 1zcb_A           32 RLVKILLLGAGESG-KSTFLKQM   53 (362)
T ss_dssp             CCEEEEEECSTTSS-HHHHHHHH
T ss_pred             CccEEEEECCCCCc-HHHHHHHH
Confidence            46799999999999 99999885

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=88.79  E-value=0.079  Score=38.22  Aligned_cols=23  Identities=9%  Similarity=-0.240  Sum_probs=19.4

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..-|+++|.+++| ||||++.+.+
T Consensus        22 ~~~i~i~G~~GsG-Kstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSG-KTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSS-HHHHHHHHHH
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHH
Confidence            3468999999999 9999998863

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=88.75  E-value=0.064  Score=43.16  Aligned_cols=22  Identities=9%  Similarity=-0.149  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|.+++| ||||++.+.+-
T Consensus        49 ~~~llGpsGsG-KSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSG-KSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHTC
T ss_pred             EEEEECCCCCh-HHHHHHHHhCC
Confidence            57899999999 99999998764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=88.75  E-value=0.059  Score=38.24  Aligned_cols=21  Identities=5%  Similarity=-0.314  Sum_probs=18.8

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .|++.|.+++| |||+.+.|..
T Consensus         2 ~I~l~G~~GsG-KsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSG-KTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSC-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            58999999999 9999999864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=88.64  E-value=0.061  Score=38.75  Aligned_cols=22  Identities=0%  Similarity=-0.248  Sum_probs=18.7

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|+++|.+++| ||||.+.+.+
T Consensus        26 ~~i~l~G~sGsG-KSTl~~~La~   47 (200)
T 3uie_A           26 CVIWVTGLSGSG-KSTLACALNQ   47 (200)
T ss_dssp             EEEEEECSTTSS-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            457899999999 9999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=88.63  E-value=0.067  Score=42.55  Aligned_cols=23  Identities=4%  Similarity=-0.169  Sum_probs=20.3

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|..++| ||||++.+.+-
T Consensus       176 ~~i~ivG~sGsG-KSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSG-KTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSC-HHHHHHHHHTT
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhc
Confidence            468999999999 99999999764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=88.52  E-value=0.058  Score=42.70  Aligned_cols=24  Identities=4%  Similarity=0.012  Sum_probs=21.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -+++++|++++| ||||++.+.+..
T Consensus        72 q~~gIiG~nGaG-KTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVG-KSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSS-HHHHHHHHHHHS
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCC
Confidence            368999999999 999999998763

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=88.49  E-value=0.044  Score=39.50  Aligned_cols=21  Identities=5%  Similarity=-0.127  Sum_probs=18.6

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .+++.|.+++| ||+|++.+..
T Consensus        40 ~~ll~G~~G~G-KT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTG-KTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSS-HHHHHHHHHH
T ss_pred             eEEEECCCCCC-HHHHHHHHHH
Confidence            38999999999 9999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=88.40  E-value=0.067  Score=37.26  Aligned_cols=22  Identities=5%  Similarity=-0.146  Sum_probs=19.2

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|++.|.+++| |||+.+.|..
T Consensus         3 ~~I~l~G~~GsG-KsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCG-MTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSS-HHHHHHHHHH
T ss_pred             ceEEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=88.36  E-value=0.078  Score=39.17  Aligned_cols=23  Identities=4%  Similarity=-0.258  Sum_probs=20.1

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ...|+++|.+++| |||+.+.|..
T Consensus        16 ~~~I~l~G~~GsG-KsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAG-KGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSS-HHHHHHHHHH
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHH
Confidence            4579999999999 9999998863

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=88.36  E-value=0.069  Score=37.03  Aligned_cols=21  Identities=5%  Similarity=-0.319  Sum_probs=19.0

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      +|++.|.+++| |||+.+.|..
T Consensus         2 ~I~l~G~~GsG-KsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSG-KSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSC-HHHHHHHHHH
T ss_pred             eEEEECCCCCC-HHHHHHHHHH
Confidence            68999999999 9999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=88.35  E-value=0.077  Score=37.62  Aligned_cols=22  Identities=5%  Similarity=-0.251  Sum_probs=19.0

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|++.|.+++| |||+.+.|..
T Consensus         4 ~~I~l~G~~GsG-KsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAG-KGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSS-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999988753

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=88.33  E-value=0.084  Score=39.62  Aligned_cols=21  Identities=0%  Similarity=-0.227  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeecc
Q 028595            5 AKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~   26 (207)
                      ..|+++|.+++| |||+++.+.
T Consensus        28 ~~I~I~G~~GsG-KSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAG-KGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHH
T ss_pred             cEEEEECCCCCC-HHHHHHHHH
Confidence            478999999999 999999987

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=88.29  E-value=0.075  Score=38.82  Aligned_cols=23  Identities=0%  Similarity=-0.194  Sum_probs=19.9

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ...|+++|.+++| |||+.+.|..
T Consensus         4 ~~~I~l~G~~GsG-KsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAG-KGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSS-HHHHHHHHHH
T ss_pred             CcEEEEECCCCCC-HHHHHHHHHH
Confidence            3579999999999 9999998854

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=88.26  E-value=0.079  Score=38.07  Aligned_cols=22  Identities=5%  Similarity=-0.201  Sum_probs=19.3

Q ss_pred             ceeEEEEecccccceeeeeeecc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      +..|++.|.+++| |||+.+.|.
T Consensus        15 ~~~I~l~G~~GsG-KsT~~~~L~   36 (203)
T 1ukz_A           15 VSVIFVLGGPGAG-KGTQCEKLV   36 (203)
T ss_dssp             CEEEEEECSTTSS-HHHHHHHHH
T ss_pred             CcEEEEECCCCCC-HHHHHHHHH
Confidence            4568999999999 999998886

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=87.96  E-value=0.095  Score=38.79  Aligned_cols=24  Identities=8%  Similarity=-0.207  Sum_probs=20.3

Q ss_pred             cceeEEEEecccccceeeeeeeccC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ...-|++.|.+++| |||+++.+..
T Consensus        25 ~g~~i~i~G~~GsG-KsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSG-KTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSC-HHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCC-HHHHHHHHHH
Confidence            34568999999999 9999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=87.90  E-value=0.076  Score=38.85  Aligned_cols=23  Identities=9%  Similarity=-0.299  Sum_probs=19.8

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ...|+++|.+++| |||+.+.|..
T Consensus         5 ~~~I~l~G~~GsG-KsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASG-KGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSS-HHHHHHHHHH
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHH
Confidence            3579999999999 9999998863

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=87.86  E-value=0.06  Score=41.80  Aligned_cols=21  Identities=5%  Similarity=-0.105  Sum_probs=18.5

Q ss_pred             eeEEEEecccccceeeeeeecc
Q 028595            5 AKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~   26 (207)
                      --++++|.+++| |||+++.+.
T Consensus       103 ~vi~lvG~nGsG-KTTll~~La  123 (304)
T 1rj9_A          103 RVVLVVGVNGVG-KTTTIAKLG  123 (304)
T ss_dssp             SEEEEECSTTSS-HHHHHHHHH
T ss_pred             eEEEEECCCCCc-HHHHHHHHH
Confidence            368899999999 999999986

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=87.80  E-value=0.082  Score=37.99  Aligned_cols=22  Identities=5%  Similarity=-0.123  Sum_probs=19.4

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|++.|.+++| |||+.+.|..
T Consensus        21 ~~I~l~G~~GsG-KST~a~~La~   42 (201)
T 2cdn_A           21 MRVLLLGPPGAG-KGTQAVKLAE   42 (201)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999998864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=87.74  E-value=0.062  Score=42.70  Aligned_cols=22  Identities=5%  Similarity=-0.260  Sum_probs=19.2

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+++.
T Consensus       125 ~i~I~GptGSG-KTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSG-KSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSC-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHhc
Confidence            58899999999 99999998653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=87.60  E-value=0.1  Score=37.33  Aligned_cols=24  Identities=0%  Similarity=-0.331  Sum_probs=20.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ...|++.|.+++| |||+.+.|...
T Consensus         8 ~~~I~i~G~~GsG-KST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSG-KSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSC-HHHHHHHHHHT
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHHC
Confidence            4578999999999 99999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=87.47  E-value=0.08  Score=41.41  Aligned_cols=21  Identities=5%  Similarity=-0.254  Sum_probs=18.2

Q ss_pred             eeEEEEecccccceeeeeeecc
Q 028595            5 AKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~   26 (207)
                      +=|+++|++++| ||||++.+.
T Consensus        93 ~iigI~GpsGSG-KSTl~~~L~  113 (321)
T 3tqc_A           93 YIIGIAGSVAVG-KSTTSRVLK  113 (321)
T ss_dssp             EEEEEECCTTSS-HHHHHHHHH
T ss_pred             EEEEEECCCCCC-HHHHHHHHH
Confidence            358999999999 999998875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=87.43  E-value=0.088  Score=38.67  Aligned_cols=21  Identities=5%  Similarity=-0.309  Sum_probs=18.7

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .|++.|.+++| |||+.+.|..
T Consensus         2 ~I~l~G~~GsG-KsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSG-KGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSC-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            58999999999 9999998853

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=87.36  E-value=0.066  Score=41.49  Aligned_cols=21  Identities=0%  Similarity=-0.278  Sum_probs=18.3

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -++++|..++| |||+++.+.+
T Consensus       102 vi~lvG~nGsG-KTTll~~Lag  122 (302)
T 3b9q_A          102 VIMIVGVNGGG-KTTSLGKLAH  122 (302)
T ss_dssp             EEEEECCTTSC-HHHHHHHHHH
T ss_pred             EEEEEcCCCCC-HHHHHHHHHH
Confidence            57899999999 9999999863

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=87.21  E-value=0.073  Score=43.81  Aligned_cols=22  Identities=5%  Similarity=-0.061  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+++-
T Consensus       140 ~v~IvGpnGsG-KSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTG-KTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSS-HHHHHHHHHHT
T ss_pred             EEEEECCCCCC-HHHHHHHHhCc
Confidence            58999999999 99999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=87.18  E-value=0.13  Score=38.75  Aligned_cols=24  Identities=8%  Similarity=-0.081  Sum_probs=20.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ...|++.|.+++| |||+++.|...
T Consensus        24 ~~~I~ieG~~GsG-KST~~~~L~~~   47 (263)
T 1p5z_B           24 IKKISIEGNIAAG-KSTFVNILKQL   47 (263)
T ss_dssp             CEEEEEECSTTSS-HHHHHTTTGGG
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHHh
Confidence            4578999999999 99999988643

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=87.10  E-value=0.21  Score=37.03  Aligned_cols=24  Identities=13%  Similarity=0.073  Sum_probs=19.8

Q ss_pred             eeEEEE--ecccccceeeeeeeccCCC
Q 028595            5 AKLACL--FATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         5 ~ki~ii--G~~~~GgKssli~~l~~~~   29 (207)
                      -||+++  |+++.+ ||.|++++.+..
T Consensus        28 nkilvl~~~~~~~~-~~~~~~~lf~~~   53 (233)
T 3uc9_A           28 NKILVLSDHPHNFL-KTQFLQDLFHCS   53 (233)
T ss_dssp             CEEEEEEEGGGHHH-HHHHHHHHHCCC
T ss_pred             CceEEEecCccccc-HHHHHHHHhccc
Confidence            467777  888898 999999998773

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=87.06  E-value=0.1  Score=38.08  Aligned_cols=22  Identities=9%  Similarity=-0.232  Sum_probs=19.4

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|+++|.+++| |||+.+.|..
T Consensus         6 ~~I~l~G~~GsG-KsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSG-KGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSS-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            579999999999 9999998853

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=86.93  E-value=0.083  Score=43.18  Aligned_cols=24  Identities=4%  Similarity=0.018  Sum_probs=20.9

Q ss_pred             eeEEEEecccccceeeeeeeccCCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -+++++|++++| ||||++.+.+..
T Consensus       158 q~~~IvG~sGsG-KSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVG-KSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSS-HHHHHHHHHHHS
T ss_pred             CEEEEECCCCCC-HHHHHHHHhccc
Confidence            368999999999 999999987653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=86.92  E-value=0.073  Score=41.79  Aligned_cols=90  Identities=16%  Similarity=0.089  Sum_probs=49.3

Q ss_pred             EEEEEeCCCCcccccc-ccc-----eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595           54 NLGLWDTAGQEDYNRL-RPL-----SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  127 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~  127 (207)
                      .+.+.|++|....... ...     ..-..|-.+++.|.+........    ...+.+.  -..-.++.||.|...    
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~----~~~~~~~--~~it~iilTKlD~~a----  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQ----ARQFNEA--VKIDGIILTKLDADA----  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH----HHHHHHH--SCCCEEEEECGGGCS----
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHH----HHHHHHh--cCCCEEEEeCcCCcc----
Confidence            4567999986443221 110     01236888999997765433322    2233321  122367889998632    


Q ss_pred             ccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHH
Q 028595          128 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK  166 (207)
Q Consensus       128 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~  166 (207)
                                ....+.......+. |...++  +|++++
T Consensus       283 ----------~~G~~l~~~~~~~~-pi~~i~--~Ge~v~  308 (328)
T 3e70_C          283 ----------RGGAALSISYVIDA-PILFVG--VGQGYD  308 (328)
T ss_dssp             ----------CCHHHHHHHHHHTC-CEEEEE--CSSSTT
T ss_pred             ----------chhHHHHHHHHHCC-CEEEEe--CCCCcc
Confidence                      22345566777787 665555  555554

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=86.91  E-value=0.089  Score=37.03  Aligned_cols=22  Identities=0%  Similarity=-0.206  Sum_probs=19.1

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|+++|.+++| |||+.+.|..
T Consensus         6 ~~i~l~G~~GsG-KST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAG-KTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSS-HHHHHHHHHH
T ss_pred             cEEEEECCCCCC-HHHHHHHHHH
Confidence            358899999999 9999998864

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=86.88  E-value=3  Score=30.42  Aligned_cols=64  Identities=11%  Similarity=-0.030  Sum_probs=44.1

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCC
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD  120 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D  120 (207)
                      .+.+.|+|+|+.-..  .....+..+|.++++... +..+...+ ..+.+.+.... -..+.++.|+.+
T Consensus       131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~-~~~~~~~~~~~-~~~~~~v~N~~~  194 (254)
T 3kjh_A          131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTG-LNIEKLAGDLG-IKKVRYVINKVR  194 (254)
T ss_dssp             CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHH-HHHHHHHHHHT-CSCEEEEEEEEC
T ss_pred             CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHH-HHHHHHHHHcC-CccEEEEEeCCC
Confidence            477889999875432  445566789999999986 45666666 55555554432 245789999988

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=86.87  E-value=0.1  Score=38.86  Aligned_cols=24  Identities=4%  Similarity=-0.328  Sum_probs=19.6

Q ss_pred             ccceeEEEEecccccceeeeeeecc
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      .....|++.|.+++| |||+.+.+.
T Consensus         7 ~~~~~i~i~G~~GsG-KsTla~~la   30 (233)
T 3r20_A            7 SGSLVVAVDGPAGTG-KSSVSRGLA   30 (233)
T ss_dssp             --CCEEEEECCTTSS-HHHHHHHHH
T ss_pred             CCCeEEEEECCCCCC-HHHHHHHHH
Confidence            345679999999999 999999886

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=86.82  E-value=0.099  Score=43.61  Aligned_cols=22  Identities=5%  Similarity=-0.269  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|+.++| |||+++.+++-
T Consensus       262 ~i~I~GptGSG-KTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASG-KTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSS-HHHHHHHHGGG
T ss_pred             EEEEECCCCCC-HHHHHHHHHhh
Confidence            58999999999 99999998754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=86.80  E-value=0.099  Score=36.89  Aligned_cols=23  Identities=0%  Similarity=-0.237  Sum_probs=19.2

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      +.-++++|.+++| ||||+.++..
T Consensus         4 ~~~i~i~G~sGsG-KTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSG-KTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSS-HHHHHHHHHH
T ss_pred             CEEEEEECCCCCC-HHHHHHHHHH
Confidence            3457899999999 9999999864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=86.53  E-value=0.1  Score=38.04  Aligned_cols=22  Identities=9%  Similarity=-0.183  Sum_probs=19.0

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .|+++|+|++| |+|...+|...
T Consensus         2 ~Iil~GpPGsG-KgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAG-KGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHHH
Confidence            58999999999 99999888643

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=86.40  E-value=0.082  Score=42.21  Aligned_cols=23  Identities=9%  Similarity=-0.188  Sum_probs=19.8

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|..++| ||||++.+.+.
T Consensus       137 ~~i~ivG~~GsG-KTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSG-KSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSS-HHHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhh
Confidence            358999999999 99999998753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=86.32  E-value=0.099  Score=37.01  Aligned_cols=22  Identities=0%  Similarity=-0.322  Sum_probs=18.9

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|+++|.+++| |||+.+.+..
T Consensus        14 ~~i~l~G~~GsG-KsT~~~~L~~   35 (186)
T 2yvu_A           14 IVVWLTGLPGSG-KTTIATRLAD   35 (186)
T ss_dssp             EEEEEECCTTSS-HHHHHHHHHH
T ss_pred             cEEEEEcCCCCC-HHHHHHHHHH
Confidence            458899999999 9999998853

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=86.24  E-value=0.099  Score=38.11  Aligned_cols=21  Identities=10%  Similarity=-0.048  Sum_probs=18.0

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -++++|.+++| ||||++.+..
T Consensus        25 ~~~i~G~~GsG-KTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTG-KTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHH
T ss_pred             EEEEEcCCCCC-HHHHHHHHHH
Confidence            36788999999 9999999874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=86.07  E-value=0.085  Score=39.42  Aligned_cols=22  Identities=14%  Similarity=0.007  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||+|++.+.+.
T Consensus        51 g~ll~G~~G~G-KTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVG-KTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHHH
T ss_pred             eEEEECCCCCC-HHHHHHHHHHH
Confidence            38999999999 99999998753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=85.91  E-value=0.11  Score=40.08  Aligned_cols=22  Identities=0%  Similarity=-0.289  Sum_probs=18.7

Q ss_pred             ceeEEEEecccccceeeeeeecc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      ...|++.|.+++| ||||++.+.
T Consensus        31 ~~ii~I~G~sGsG-KSTla~~L~   52 (290)
T 1odf_A           31 PLFIFFSGPQGSG-KSFTSIQIY   52 (290)
T ss_dssp             CEEEEEECCTTSS-HHHHHHHHH
T ss_pred             CeEEEEECCCCCC-HHHHHHHHH
Confidence            3568999999999 999998764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=85.80  E-value=0.15  Score=38.21  Aligned_cols=23  Identities=0%  Similarity=-0.415  Sum_probs=19.2

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ...|+++|.+++| |||+.+.+..
T Consensus        32 ~~~i~l~G~~GsG-KSTla~~L~~   54 (253)
T 2p5t_B           32 PIAILLGGQSGAG-KTTIHRIKQK   54 (253)
T ss_dssp             CEEEEEESCGGGT-THHHHHHHHH
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHH
Confidence            3568899999999 9999988753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=85.77  E-value=0.11  Score=36.63  Aligned_cols=21  Identities=5%  Similarity=-0.287  Sum_probs=18.6

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .|+++|.+++| |||+.+.|..
T Consensus         4 ~I~l~G~~GsG-KsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSG-KSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSS-HHHHHHHHHH
T ss_pred             eEEEECCCCCC-HHHHHHHHHH
Confidence            58999999999 9999988854

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=85.75  E-value=0.11  Score=36.53  Aligned_cols=20  Identities=10%  Similarity=-0.350  Sum_probs=17.2

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      -.+++|..++| ||||+..+.
T Consensus        28 ~~~i~G~NGsG-KStll~ai~   47 (182)
T 3kta_A           28 FTAIVGANGSG-KSNIGDAIL   47 (182)
T ss_dssp             EEEEEECTTSS-HHHHHHHHH
T ss_pred             cEEEECCCCCC-HHHHHHHHH
Confidence            35789999999 999999974

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=85.74  E-value=0.089  Score=40.09  Aligned_cols=21  Identities=10%  Similarity=-0.104  Sum_probs=18.9

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -++++|.+++| ||+|++.+.+
T Consensus        46 GvlL~Gp~GtG-KTtLakala~   66 (274)
T 2x8a_A           46 GVLLAGPPGCG-KTLLAKAVAN   66 (274)
T ss_dssp             EEEEESSTTSC-HHHHHHHHHH
T ss_pred             eEEEECCCCCc-HHHHHHHHHH
Confidence            38999999999 9999999865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=85.63  E-value=0.12  Score=39.66  Aligned_cols=22  Identities=0%  Similarity=-0.352  Sum_probs=18.5

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|++.|.+++| |||+.+.+..
T Consensus        34 ~livl~G~sGsG-KSTla~~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSG-KTSLRSAIFE   55 (287)
T ss_dssp             EEEEEECCTTSC-THHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            457888999999 9999999863

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=85.57  E-value=1.5  Score=32.59  Aligned_cols=67  Identities=19%  Similarity=0.189  Sum_probs=42.2

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCcEE-EEeeCCCcc
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH----YSPGVPVV-LVGTKLDLR  122 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~----~~~~~pii-vv~nK~D~~  122 (207)
                      .+.+.|+|+|+....  .....+..+|.+|++...+. .+...+ ..+++.+..    ..++.+++ +|.|+.|..
T Consensus       111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~-~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~  182 (257)
T 1wcv_1          111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGV-AGLLATLEEVRAGLNPRLRLLGILVTMYDGR  182 (257)
T ss_dssp             TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHH-HHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred             CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHH-HHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence            467889999876432  22344566899999998654 444444 333333332    23567774 899998753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=85.52  E-value=0.099  Score=40.08  Aligned_cols=22  Identities=5%  Similarity=-0.084  Sum_probs=18.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+.
T Consensus        37 ~~~i~G~~G~G-KTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMG-KSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHHH
T ss_pred             EEEEEeCCCCC-HHHHHHHHHHH
Confidence            36889999999 99999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=85.46  E-value=0.13  Score=35.76  Aligned_cols=23  Identities=4%  Similarity=-0.194  Sum_probs=19.5

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      +-.|++.|.+++| |||+.+.|..
T Consensus         7 ~~~i~l~G~~GsG-KSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSG-KSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSS-HHHHHHHHHH
T ss_pred             cceEEEECCCCCC-HHHHHHHHHH
Confidence            4578999999999 9999998854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=85.41  E-value=0.11  Score=36.26  Aligned_cols=23  Identities=13%  Similarity=-0.042  Sum_probs=19.5

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..+++.|.+++| ||+|++.+...
T Consensus        44 ~~~ll~G~~G~G-KT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVG-KTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSC-HHHHHHHHHHH
T ss_pred             CceEEECCCCCC-HHHHHHHHHHH
Confidence            458999999999 99999988643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=85.38  E-value=0.54  Score=37.33  Aligned_cols=19  Identities=5%  Similarity=-0.246  Sum_probs=16.8

Q ss_pred             EEEEecccccceeeeeeecc
Q 028595            7 LACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~   26 (207)
                      .+++|..++| ||||++.++
T Consensus        26 ~~i~G~NGaG-KTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAG-KSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSS-HHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHH
Confidence            5689999999 999999876

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=85.21  E-value=0.1  Score=41.52  Aligned_cols=21  Identities=0%  Similarity=-0.278  Sum_probs=18.4

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -++++|..++| |||+++.+.+
T Consensus       159 vi~lvG~nGsG-KTTll~~Lag  179 (359)
T 2og2_A          159 VIMIVGVNGGG-KTTSLGKLAH  179 (359)
T ss_dssp             EEEEECCTTSC-HHHHHHHHHH
T ss_pred             EEEEEcCCCCh-HHHHHHHHHh
Confidence            57899999999 9999998863

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=85.18  E-value=0.1  Score=43.28  Aligned_cols=20  Identities=5%  Similarity=-0.140  Sum_probs=18.0

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      -++++|.+++| ||||++.+.
T Consensus       295 VI~LVGpNGSG-KTTLl~~LA  314 (503)
T 2yhs_A          295 VILMVGVNGVG-KTTTIGKLA  314 (503)
T ss_dssp             EEEEECCTTSS-HHHHHHHHH
T ss_pred             EEEEECCCccc-HHHHHHHHH
Confidence            57899999999 999999986

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=85.12  E-value=0.1  Score=42.35  Aligned_cols=22  Identities=5%  Similarity=-0.284  Sum_probs=19.0

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+++.
T Consensus       169 ii~I~GpnGSG-KTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSG-KSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSC-HHHHHHHHHHH
T ss_pred             eEEEECCCCCC-HHHHHHHHHhh
Confidence            47899999999 99999998754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=84.90  E-value=0.18  Score=42.63  Aligned_cols=23  Identities=4%  Similarity=-0.198  Sum_probs=19.9

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|..++| ||||++.+.+-
T Consensus       368 ~~~~ivG~sGsG-KSTll~~l~g~  390 (578)
T 4a82_A          368 ETVAFVGMSGGG-KSTLINLIPRF  390 (578)
T ss_dssp             CEEEEECSTTSS-HHHHHTTTTTS
T ss_pred             CEEEEECCCCCh-HHHHHHHHhcC
Confidence            368999999999 99999988654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=84.88  E-value=0.15  Score=42.86  Aligned_cols=22  Identities=9%  Similarity=-0.052  Sum_probs=19.8

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus        49 ~~~LvG~NGaG-KSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTG-KSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTS
T ss_pred             EEEEECCCCCC-HHHHHHHHhCC
Confidence            57899999999 99999998865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=84.75  E-value=0.16  Score=42.98  Aligned_cols=23  Identities=4%  Similarity=-0.204  Sum_probs=20.2

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|.+++| ||||++.+.+-
T Consensus       370 ~~~~ivG~sGsG-KSTLl~~l~g~  392 (582)
T 3b60_A          370 KTVALVGRSGSG-KSTIASLITRF  392 (582)
T ss_dssp             CEEEEEECTTSS-HHHHHHHHTTT
T ss_pred             CEEEEECCCCCC-HHHHHHHHhhc
Confidence            368999999999 99999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=84.64  E-value=0.15  Score=42.86  Aligned_cols=22  Identities=18%  Similarity=0.054  Sum_probs=19.3

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+.+-
T Consensus        27 i~gLiGpNGaG-KSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVG-KTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCc-HHHHHHHHhcC
Confidence            36899999999 99999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=84.58  E-value=0.17  Score=38.67  Aligned_cols=22  Identities=9%  Similarity=-0.212  Sum_probs=19.5

Q ss_pred             ceeEEEEecccccceeeeeeecc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      ...|++.|++++| |||+.+.|.
T Consensus        75 ~~iI~I~G~~GSG-KSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSG-KSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSC-HHHHHHHHH
T ss_pred             CEEEEEECCCCCC-HHHHHHHHH
Confidence            4569999999999 999999886

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=84.39  E-value=0.14  Score=38.50  Aligned_cols=20  Identities=5%  Similarity=-0.242  Sum_probs=17.6

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      -|+++|.+++| ||||.+.|.
T Consensus         3 li~I~G~~GSG-KSTla~~La   22 (253)
T 2ze6_A            3 LHLIYGPTCSG-KTDMAIQIA   22 (253)
T ss_dssp             EEEEECCTTSS-HHHHHHHHH
T ss_pred             EEEEECCCCcC-HHHHHHHHH
Confidence            47899999999 999999875

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=84.38  E-value=0.17  Score=39.61  Aligned_cols=22  Identities=14%  Similarity=-0.037  Sum_probs=19.5

Q ss_pred             cceeEEEEecccccceeeeeeec
Q 028595            3 LLAKLACLFATQVTSFLLYVLSV   25 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l   25 (207)
                      ...|++++|...+| |||++.+.
T Consensus         6 ~~~klLlLG~geSG-KSTi~KQm   27 (327)
T 3ohm_A            6 RELKLLLLGTGESG-KSTFIKQM   27 (327)
T ss_dssp             CEEEEEEECSTTSS-HHHHHHHH
T ss_pred             ccceEEEEcCCCcc-HHHHHHHH
Confidence            46799999999999 99999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=84.33  E-value=0.17  Score=36.42  Aligned_cols=24  Identities=0%  Similarity=-0.247  Sum_probs=20.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ...|++.|+.++| |||+.+.|...
T Consensus        12 ~~iIgltG~~GSG-KSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTG-KSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHH
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHHh
Confidence            4568999999999 99999988643

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=84.13  E-value=0.15  Score=37.01  Aligned_cols=22  Identities=0%  Similarity=-0.238  Sum_probs=18.8

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|+++|.+++| |||+.+.+..
T Consensus        26 ~~i~~~G~~GsG-KsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASG-KSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSS-HHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHHH
Confidence            458899999999 9999998753

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=84.13  E-value=0.12  Score=40.52  Aligned_cols=23  Identities=0%  Similarity=-0.162  Sum_probs=19.7

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..++++|.+++| ||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~G-KTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLG-KTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSS-HHHHHHHHHHH
T ss_pred             CeEEEECCCCCc-HHHHHHHHHHH
Confidence            358999999999 99999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=84.08  E-value=0.16  Score=43.38  Aligned_cols=22  Identities=9%  Similarity=0.021  Sum_probs=19.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+-
T Consensus       105 i~~LvGpNGaG-KSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIG-KSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTS
T ss_pred             EEEEECCCCCh-HHHHHHHHhcC
Confidence            47899999999 99999998864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=84.03  E-value=0.12  Score=39.22  Aligned_cols=22  Identities=14%  Similarity=0.007  Sum_probs=19.4

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||+|++.+.+.
T Consensus        75 gvll~Gp~GtG-KTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVG-KTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHHH
T ss_pred             eEEEECCCcCh-HHHHHHHHHHH
Confidence            48999999999 99999998753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=83.92  E-value=0.44  Score=44.38  Aligned_cols=35  Identities=14%  Similarity=-0.016  Sum_probs=26.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEG   50 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~   50 (207)
                      -||+++|..++| ||||++.+.+-     |.|+.|     .+.+||
T Consensus      1106 e~vaIVG~SGsG-KSTL~~lL~rl-----~~p~~G-----~I~iDG 1140 (1321)
T 4f4c_A         1106 QTLALVGPSGCG-KSTVVALLERF-----YDTLGG-----EIFIDG 1140 (1321)
T ss_dssp             CEEEEECSTTSS-TTSHHHHHTTS-----SCCSSS-----EEEETT
T ss_pred             CEEEEECCCCCh-HHHHHHHHhcC-----ccCCCC-----EEEECC
Confidence            489999999999 99999988643     345544     456676

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=83.80  E-value=0.22  Score=38.30  Aligned_cols=26  Identities=4%  Similarity=-0.157  Sum_probs=16.8

Q ss_pred             Ccc-ceeEEEEecccccceeeeeeeccC
Q 028595            1 MEL-LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         1 m~~-~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      |.. ..-|++-|++++| |||+.+.|..
T Consensus         1 Ms~~~~iIgItG~sGSG-KSTva~~L~~   27 (290)
T 1a7j_A            1 MSKKHPIISVTGSSGAG-TSTVKHTFDQ   27 (290)
T ss_dssp             -CTTSCEEEEESCC----CCTHHHHHHH
T ss_pred             CCCCceEEEEECCCCCC-HHHHHHHHHH
Confidence            443 3458888999999 9999998764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=83.73  E-value=0.18  Score=37.63  Aligned_cols=23  Identities=4%  Similarity=-0.266  Sum_probs=19.7

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ...|++.|++++| |||+.+.|..
T Consensus        22 ~~iI~I~G~~GSG-KST~a~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASG-KSSVCAKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSS-HHHHHHHHHH
T ss_pred             cEEEEEECCCCCC-HHHHHHHHHH
Confidence            4569999999999 9999998854

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=83.73  E-value=0.18  Score=39.96  Aligned_cols=22  Identities=18%  Similarity=0.008  Sum_probs=19.6

Q ss_pred             ceeEEEEecccccceeeeeeecc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      ..||+++|..++| ||||++++.
T Consensus         9 ~~k~lllG~~~sG-KsT~~kq~~   30 (354)
T 2xtz_A            9 IRKLLLLGAGESG-KSTIFKQIK   30 (354)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHH
T ss_pred             ceeEEEECCCCCc-HHHHHHHHH
Confidence            5699999999999 999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=83.72  E-value=0.2  Score=42.63  Aligned_cols=23  Identities=17%  Similarity=-0.143  Sum_probs=20.1

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|.+++| ||||++.+.+-
T Consensus       382 ~~~~ivG~sGsG-KSTll~~l~g~  404 (598)
T 3qf4_B          382 QKVALVGPTGSG-KTTIVNLLMRF  404 (598)
T ss_dssp             CEEEEECCTTSS-TTHHHHHHTTS
T ss_pred             CEEEEECCCCCc-HHHHHHHHhcC
Confidence            478999999999 99999988654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=83.67  E-value=0.15  Score=37.45  Aligned_cols=22  Identities=0%  Similarity=-0.257  Sum_probs=19.1

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||+|+..++..
T Consensus        26 ~~~i~G~~GsG-KTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTG-KTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCc-HHHHHHHHHHH
Confidence            46889999999 99999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=83.65  E-value=0.15  Score=35.59  Aligned_cols=22  Identities=14%  Similarity=-0.168  Sum_probs=19.0

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..+++.|.+++| ||+|++.+..
T Consensus        44 ~~vll~G~~G~G-KT~la~~~~~   65 (187)
T 2p65_A           44 NNPILLGDPGVG-KTAIVEGLAI   65 (187)
T ss_dssp             CEEEEESCGGGC-HHHHHHHHHH
T ss_pred             CceEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999988864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=83.64  E-value=0.18  Score=42.67  Aligned_cols=23  Identities=4%  Similarity=-0.260  Sum_probs=20.1

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|.+++| ||||++.+.+-
T Consensus       370 ~~~~ivG~sGsG-KSTll~~l~g~  392 (582)
T 3b5x_A          370 KTVALVGRSGSG-KSTIANLFTRF  392 (582)
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcC
Confidence            368999999999 99999998764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=83.36  E-value=0.23  Score=42.19  Aligned_cols=23  Identities=13%  Similarity=-0.120  Sum_probs=20.0

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|.+++| ||||++.+.+-
T Consensus       370 e~~~ivG~sGsG-KSTll~~l~g~  392 (587)
T 3qf4_A          370 SLVAVLGETGSG-KSTLMNLIPRL  392 (587)
T ss_dssp             CEEEEECSSSSS-HHHHHHTTTTS
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCC
Confidence            368999999999 99999988654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=83.34  E-value=0.16  Score=36.71  Aligned_cols=21  Identities=5%  Similarity=-0.287  Sum_probs=18.6

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -++++|.+++| ||||+..+..
T Consensus        22 ~~~i~G~~GsG-KTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASG-KTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            46889999999 9999999976

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=83.13  E-value=0.21  Score=35.75  Aligned_cols=21  Identities=5%  Similarity=-0.257  Sum_probs=18.6

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .|++.|++++| |||+.+.|..
T Consensus         4 ~i~i~G~~GsG-Kst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASG-KSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            68899999999 9999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=83.13  E-value=0.19  Score=42.89  Aligned_cols=22  Identities=9%  Similarity=-0.040  Sum_probs=19.6

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .++++|..++| ||||++.+.+-
T Consensus       119 ~~~LiG~NGsG-KSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTG-KTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCh-HHHHHHHHhCC
Confidence            57899999999 99999998864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=82.95  E-value=0.15  Score=42.26  Aligned_cols=20  Identities=0%  Similarity=-0.345  Sum_probs=17.8

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      -++++|.+++| ||||++.+.
T Consensus        31 ~~~liG~nGsG-KSTLl~~l~   50 (483)
T 3euj_A           31 VTTLSGGNGAG-KSTTMAGFV   50 (483)
T ss_dssp             EEEEECCTTSS-HHHHHHHHH
T ss_pred             eEEEECCCCCc-HHHHHHHHh
Confidence            47899999999 999999876

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=82.86  E-value=0.21  Score=39.35  Aligned_cols=22  Identities=9%  Similarity=-0.111  Sum_probs=18.4

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|+|.|+.++| ||||...|..
T Consensus         8 ~lI~I~GptgSG-KTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASG-KTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSS-HHHHHHHHHH
T ss_pred             ceEEEECCCcCc-HHHHHHHHHH
Confidence            358899999999 9999988764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=82.77  E-value=0.17  Score=37.98  Aligned_cols=22  Identities=0%  Similarity=-0.325  Sum_probs=19.4

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|+++|.+++| |||+.+.+..
T Consensus        49 ~~i~l~G~~GsG-KSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSG-KTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSC-HHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999998854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=82.56  E-value=0.2  Score=42.04  Aligned_cols=23  Identities=9%  Similarity=0.031  Sum_probs=19.9

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|..++| ||||++.+.+-.
T Consensus       296 i~~i~G~nGsG-KSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIG-KTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTSS
T ss_pred             EEEEECCCCCC-HHHHHHHHhCCC
Confidence            47899999999 999999998653

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=82.52  E-value=0.22  Score=39.43  Aligned_cols=22  Identities=23%  Similarity=-0.073  Sum_probs=19.6

Q ss_pred             cceeEEEEecccccceeeeeeec
Q 028595            3 LLAKLACLFATQVTSFLLYVLSV   25 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l   25 (207)
                      ...|++++|...+| |||+++++
T Consensus        31 ~~~klLlLG~geSG-KST~~KQm   52 (353)
T 1cip_A           31 REVKLLLLGAGESG-KSTIVKQM   52 (353)
T ss_dssp             CEEEEEEECSTTSS-HHHHHHHH
T ss_pred             ccceEEEEcCCCCC-chhHHHHH
Confidence            36799999999999 99998875

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=82.16  E-value=1.5  Score=32.73  Aligned_cols=66  Identities=15%  Similarity=0.010  Sum_probs=41.4

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEeeCCCc
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDL  121 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-vv~nK~D~  121 (207)
                      .+.+.|+|+|+...........+..+|.+|++...+. .+...+ ...++.+...  +.+++ +|.|+.|.
T Consensus       128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~  194 (262)
T 2ph1_A          128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIV-EKAINMAEET--NTSVLGLVENMSYF  194 (262)
T ss_dssp             SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHH-HHHHHHHHTT--TCCEEEEEETTCCE
T ss_pred             CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHH-HHHHHHHHhC--CCCEEEEEECCCcc
Confidence            4678899998854321111111235899999987653 445555 4556666543  56776 99999874

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=82.02  E-value=0.25  Score=38.98  Aligned_cols=22  Identities=5%  Similarity=-0.217  Sum_probs=19.2

Q ss_pred             cceeEEEEecccccceeeeeeec
Q 028595            3 LLAKLACLFATQVTSFLLYVLSV   25 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l   25 (207)
                      ...|++++|...+| |||++++.
T Consensus         4 ~~~klLLLG~geSG-KSTi~KQm   25 (340)
T 4fid_A            4 KPITVMLLGSGESG-KSTIAKQL   25 (340)
T ss_dssp             CCEEEEEEECTTSS-HHHHHHHH
T ss_pred             CcceEEEECCCCCc-HHHHHHHH
Confidence            35799999999999 99998764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=81.94  E-value=0.26  Score=36.22  Aligned_cols=20  Identities=5%  Similarity=-0.277  Sum_probs=17.0

Q ss_pred             EEEEecccccceeeeeeeccC
Q 028595            7 LACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~   27 (207)
                      |+++|++++| |+|...+|..
T Consensus        32 I~llGpPGsG-KgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSG-KGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCC-HHHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHHH
Confidence            5678999999 9999988764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=81.83  E-value=0.25  Score=36.54  Aligned_cols=24  Identities=0%  Similarity=-0.405  Sum_probs=17.0

Q ss_pred             cceeEEEEecccccceeeeeeeccC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-.-|++.|.+++| |||+++.+..
T Consensus        24 ~g~~I~~eG~~GsG-KsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAG-KTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC----CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCC-HHHHHHHHHH
Confidence            34568999999999 9999998853

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=81.77  E-value=0.28  Score=39.59  Aligned_cols=22  Identities=18%  Similarity=-0.056  Sum_probs=19.9

Q ss_pred             cceeEEEEecccccceeeeeeec
Q 028595            3 LLAKLACLFATQVTSFLLYVLSV   25 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l   25 (207)
                      ...|++++|...+| |||++.+.
T Consensus        39 ~~~klLLLG~geSG-KSTi~KQm   60 (402)
T 1azs_C           39 ATHRLLLLGAGESG-KSTIVKQM   60 (402)
T ss_dssp             TEEEEEEEESTTSS-HHHHHHHH
T ss_pred             ccceEEEecCCCCc-hhhHHHHH
Confidence            46899999999999 99999885

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=81.65  E-value=0.2  Score=36.52  Aligned_cols=22  Identities=0%  Similarity=-0.165  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..+++.|.+++| ||+|++.+..
T Consensus        53 ~~~ll~G~~G~G-KT~la~~l~~   74 (242)
T 3bos_A           53 QAIYLWGPVKSG-RTHLIHAACA   74 (242)
T ss_dssp             SEEEEECSTTSS-HHHHHHHHHH
T ss_pred             CeEEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999998864

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=81.59  E-value=2.3  Score=31.36  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=46.9

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-------CCCcEEEEeeCCCc
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLDL  121 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------~~~piivv~nK~D~  121 (207)
                      .+.+.|+|+|+...  ......+..+|.+|++... +..+...+ ..++..+....       +..++.+|.|+.+.
T Consensus       113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDS-DRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHH-HHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHH-HHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            47789999987543  2445566789999999885 56677776 66777776543       22567899999885

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=81.27  E-value=0.22  Score=38.07  Aligned_cols=22  Identities=0%  Similarity=-0.179  Sum_probs=19.1

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|++.|.+++| |||+.+.|..
T Consensus         3 ~~I~l~G~~GsG-KST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSG-KSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSS-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            358899999999 9999998875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=81.16  E-value=0.19  Score=34.45  Aligned_cols=19  Identities=0%  Similarity=-0.314  Sum_probs=16.1

Q ss_pred             EEEEecccccceeeeeeecc
Q 028595            7 LACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~   26 (207)
                      .+++|..++| ||+|+..+.
T Consensus        26 ~~I~G~NGsG-KStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSG-KSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSS-HHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHH
Confidence            4788888888 999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=80.79  E-value=0.25  Score=42.16  Aligned_cols=23  Identities=9%  Similarity=0.085  Sum_probs=20.1

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .++++|..++| ||||++.+.+-.
T Consensus       384 i~~i~G~NGsG-KSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIG-KTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred             EEEEECCCCCC-HHHHHHHHhcCC
Confidence            57899999999 999999998753

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=80.61  E-value=0.23  Score=35.50  Aligned_cols=22  Identities=9%  Similarity=-0.094  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..+++.|.+++| ||+|+..+..
T Consensus        55 ~~~~l~G~~GtG-KT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVG-KTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSS-HHHHHHHHHH
T ss_pred             CeEEEECCCCCC-HHHHHHHHHH
Confidence            568999999999 9999988764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=80.60  E-value=0.24  Score=37.53  Aligned_cols=21  Identities=10%  Similarity=-0.059  Sum_probs=18.2

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -++++|.+++| ||||+..+..
T Consensus        32 i~~i~G~~GsG-KTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAG-KSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHH
T ss_pred             EEEEEcCCCCC-HHHHHHHHHH
Confidence            46889999999 9999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=80.42  E-value=0.28  Score=41.19  Aligned_cols=23  Identities=9%  Similarity=0.085  Sum_probs=20.2

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      .++++|..++| ||||++.+.+-.
T Consensus       314 ~~~i~G~NGsG-KSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIG-KTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred             EEEEECCCCCC-HHHHHHHHhCCC
Confidence            57899999999 999999998753

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=80.41  E-value=0.27  Score=35.03  Aligned_cols=21  Identities=5%  Similarity=-0.148  Sum_probs=18.8

Q ss_pred             EEEEecccccceeeeeeeccCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~   28 (207)
                      +.|+|++++| ||+|..++...
T Consensus         2 ilV~Gg~~SG-KS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSG-KSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSS-HHHHHHHHHCS
T ss_pred             EEEECCCCCc-HHHHHHHHHhc
Confidence            6899999999 99999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-33
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-27
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-27
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-26
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	6e-25
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-24
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-24
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-23
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-22
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-21
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-20
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-20
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-20
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	9e-20
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-18
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-18
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-18
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	9e-18
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-17
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-15
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	9e-15
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-14
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-14
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-14
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-13
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-13
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-12
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	5e-12
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-11
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-11
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-11
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	6e-11
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-10
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-10
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-09
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-09
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-08
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-08
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-07
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-07
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-07
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	4e-07
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	4e-07
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	7e-07
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	9e-07
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-06
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-06
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-05
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	8e-05
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-04
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-04
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	7e-04
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.001

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 6e-33
 Identities = 77/165 (46%), Positives = 110/165 (66%), Gaps = 6/165 (3%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVFDN++  V+  G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+
Sbjct: 31  EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG--LVPVTTAQGEELRKQIG 150
           ENV +KW+PE+ H+ P  P +LVGT++DLR+D   +         P+T    E+L + + 
Sbjct: 91  ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLL 195
           A  Y+ECS+ TQ+ +K VFD AI   ++PP+     KK +R  LL
Sbjct: 151 AVKYVECSALTQKGLKNVFDEAILAALEPPE----PKKSRRCVLL 191

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 1e-27
 Identities = 73/151 (48%), Positives = 108/151 (71%), Gaps = 2/151 (1%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
             +Y+PTVFD+++ +V   G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+V+ A
Sbjct: 35  PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA 94

Query: 91  SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQ 148
           S++NV ++W+PEL+ Y+P VP +L+GT++DLR+D   L   +     P+   QG++L K+
Sbjct: 95  SFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE 154

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKP 179
           IGA  Y+ECS+ TQ+ +K VFD AI  ++ P
Sbjct: 155 IGACCYVECSALTQKGLKTVFDEAIIAILTP 185

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 88/152 (57%), Positives = 112/152 (73%), Gaps = 2/152 (1%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
             +YIPTVFDN+SANV+ +G  VNLGLWDTAGQEDY+RLRPLSY   DV ++ FSLVS A
Sbjct: 31  PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPA 90

Query: 91  SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQ 148
           S+ENV  KW PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+
Sbjct: 91  SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180
           IGA  Y+ECS+ TQ+ +K VFD AI+ V+ PP
Sbjct: 151 IGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.9 bits (243), Expect = 2e-26
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 33  DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            +I T+  +F    V   G  V L +WDTAGQE +  +    YRGA   +L + +    +
Sbjct: 30  SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT 89

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           + N+ + +    +H +    ++LVG K D+                T  QGE L K++G 
Sbjct: 90  FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV-----------TADQGEALAKELGI 138

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVIK 178
             +IE S+K   NV  +F    K++ +
Sbjct: 139 P-FIESSAKNDDNVNEIFFTLAKLIQE 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 6e-25
 Identities = 67/148 (45%), Positives = 98/148 (66%), Gaps = 2/148 (1%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
            Y+PTVF+N+ A++  +G  V L LWDTAG EDY+RLRPLSY   DV ++ FS+ S  S 
Sbjct: 30  VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL 89

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH--PGLVPVTTAQGEELRKQIG 150
           EN+ +KW PE++H+ P VP++LVG K DLR D+H   +       PV   +G ++  +IG
Sbjct: 90  ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG 149

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
           A  Y+ECS+KT+  V+ VF+ A +  ++
Sbjct: 150 AFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.2 bits (230), Expect = 1e-24
 Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 3/149 (2%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
           +Y+PTVF+N++A+   +   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + 
Sbjct: 30  NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 89

Query: 93  ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP--GLVPVTTAQGEELRKQIG 150
           ++VLKKW  E+Q + P   ++LVG K DLR D   L +       PV+  QG  + KQIG
Sbjct: 90  DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 149

Query: 151 ASYYIECSSKTQQN-VKAVFDAAIKVVIK 178
           A+ YIECS+   +N V+ +F  A    + 
Sbjct: 150 AATYIECSALQSENSVRDIFHVATLACVN 178

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (229), Expect = 3e-24
 Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 33  DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
           DYI T+  +F    V  +G TV L +WDTAGQE +  +    YRG+   ++ + +  + S
Sbjct: 34  DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 93

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           +  V        ++ +  V  +LVG K DL++ +    D             +       
Sbjct: 94  FNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVA-----------KEFADANK 142

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQR 191
             ++E S+    NV+  F    + + +   +Q   +  Q+
Sbjct: 143 MPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 182

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.4 bits (221), Expect = 3e-23
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 31  IWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR 89
              +I T+  +F    +  +G  + L +WDTAGQE +  +    YRGA   +L + + + 
Sbjct: 32  NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE 91

Query: 90  ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
            S++N+        +H S  V  +++G K D+ + +            +  +GE+L    
Sbjct: 92  KSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQV----------SKERGEKLALDY 141

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 182
           G   ++E S+K   NV+  F    + +     K
Sbjct: 142 GIK-FMETSAKANINVENAFFTLARDIKAKMDK 173

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 1e-22
 Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 13/163 (7%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           T  +       G            D     V   G  V L +WDTAGQE +  +    YR
Sbjct: 19  TCLVRRF--TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR 76

Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 135
            A+  +L + +    S+  + +      Q+ S  V  VLVG K+DL E +          
Sbjct: 77  SANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREV-------- 128

Query: 136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
             +  + EE  +     YY+E S+K   NV+ +F      +I 
Sbjct: 129 --SQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLIS 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 3e-21
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 14/164 (8%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY 74
           T  L+      G      +I TV  +F +  +  +G  V L +WDTAGQE +  +    Y
Sbjct: 20  TCLLVRF--KDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYY 77

Query: 75  RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134
           R A   +L + + ++AS++N+        ++    V ++L+G K+D   ++         
Sbjct: 78  RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER--------- 128

Query: 135 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
             V    GE+L K+ G   ++E S+KT  NV   F A  K + +
Sbjct: 129 -VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 170

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 1e-20
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 13/169 (7%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           ++ L          ++        +  + ++  +G T+   +WDTAGQE Y R+    YR
Sbjct: 18  SNLLSRF--TRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYR 75

Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 135
           GA   +L + +    +YENV +       H    + ++LVG K DLR  +          
Sbjct: 76  GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV-------- 127

Query: 136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
              T +     ++   S +IE S+    NV+  F   +  + +   +++
Sbjct: 128 --PTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.2 bits (202), Expect = 2e-20
 Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           TSFL          +         D     +      + L +WDTAGQE Y  +    YR
Sbjct: 19  TSFLFRY--ADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYR 76

Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 135
           GA  F+L + + +  S+  V         +      V+LVG K D+ +++   ++     
Sbjct: 77  GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERG--- 133

Query: 136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
                   +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct: 134 -------RQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-20
 Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 13/159 (8%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           +  L        +           +  +  +   G  + L +WDTAGQE +  +    YR
Sbjct: 18  SCLLHQF--TEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYR 75

Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 135
           GA   ++ + +  R++Y ++           +P   ++L+G K DL   +          
Sbjct: 76  GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV-------- 127

Query: 136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 174
             T  + ++  ++ G   ++E S+KT +NV+  F  A K
Sbjct: 128 --TYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAK 163

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 9e-20
 Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 23/158 (14%)

Query: 33  DYIPTVFDNFSANVV-----------AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81
            +I TV  +F    V            +   V+L LWDTAGQE +  L    +R A  F+
Sbjct: 33  KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFL 92

Query: 82  LAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA 140
           L F L S+ S+ NV         + Y     +VL+G K DL + +               
Sbjct: 93  LMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREV----------NER 142

Query: 141 QGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
           Q  EL  + G   Y E S+ T QNV+   +  + +++K
Sbjct: 143 QARELADKYGIP-YFETSAATGQNVEKAVETLLDLIMK 179

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 1e-18
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 33  DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            +  T+   F A +V  +G  + L +WDTAGQE +  +    YRGA   +L + +  R +
Sbjct: 31  VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET 90

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           + ++        QH S  + ++L+G K DL   +    +           GE   ++ G 
Sbjct: 91  FNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREE----------GEAFAREHGL 140

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 182
             ++E S+KT  NV+  F    K + +  Q+
Sbjct: 141 I-FMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 1e-18
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 13/169 (7%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           +  L     +  +           +  S  +   G  V L +WDTAGQE +  +    YR
Sbjct: 19  SCLLHQF--IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 76

Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 135
           GA   +L + + SR +Y  +           S  + ++L G K DL  D+          
Sbjct: 77  GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEA--- 133

Query: 136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
                      ++     ++E S+ T +NV+  F    + ++   +  +
Sbjct: 134 -------SRFAQENELM-FLETSALTGENVEEAFVQCARKILNKIESGE 174

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 2e-18
 Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           I  Y PT+ D +   +  + +   L + DTAG E +  +R L  +    F+L +SLV++ 
Sbjct: 29  IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ 88

Query: 91  SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           S++++       ++      VPV+LVG K+DL  ++            ++++G  L ++ 
Sbjct: 89  SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREV----------SSSEGRALAEEW 138

Query: 150 GASYYIECSSKTQQNVKAVFDAAIK 174
           G  + +E S+K++  V  +F   ++
Sbjct: 139 GCPF-METSAKSKTMVDELFAEIVR 162

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 9e-18
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 13/165 (7%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           +S LL                   D     +  +G    L +WDTAGQE +  L P  YR
Sbjct: 21  SSLLLRF--TDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR 78

Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 135
           GA   +L + +  R ++  +         + +    V ++      +E++          
Sbjct: 79  GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR---------- 128

Query: 136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180
            V   +G +  ++     +IE S+KT   V+  F+  ++ +I+ P
Sbjct: 129 EVDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELVEKIIQTP 172

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 1e-17
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 33  DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            Y  T+  +F +  +  E  T+ L LWDTAGQE +  L P   R +   V+ + + +  S
Sbjct: 28  TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNS 87

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           ++   K            V ++LVG K DL + +    +            E   K++  
Sbjct: 88  FQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEG----------ERKAKELNV 137

Query: 152 SYYIECSSKTQQNVKAVFDAAIK 174
             +IE S+K   NVK +F     
Sbjct: 138 M-FIETSAKAGYNVKQLFRRVAA 159

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 2e-15
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)

Query: 33  DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
               T+   F    +  +G  V + +WDTAGQE +  LR   YRG+D  +L FS+    S
Sbjct: 34  QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS 93

Query: 92  YENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
           ++N+   W  E  +Y+        P V++G K+D+ E +            +T + +   
Sbjct: 94  FQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQV-----------STEEAQAWC 141

Query: 147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
           +  G   Y E S+K   NV A F+ A++ V+ 
Sbjct: 142 RDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 9e-15
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 13/163 (7%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           +S +L  +           I   F   +  +     TV   +WDTAGQE Y+ L P+ YR
Sbjct: 20  SSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT--TVKFEIWDTAGQERYHSLAPMYYR 77

Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 135
           GA   ++ + + +  S+           +  SP + + L G K DL   +          
Sbjct: 78  GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAV-------- 129

Query: 136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
                + +          ++E S+KT  NV  +F A  K + K
Sbjct: 130 --DFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPK 169

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 1e-14
 Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 11/129 (8%)

Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG 109
           G  VNL +WDTAGQE ++ L P+ YR ++  +L + +    S++ V        +     
Sbjct: 49  GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE 108

Query: 110 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
           + + +VG K+DL +++H           +  + E   + +GA +Y   S+K  + ++ +F
Sbjct: 109 ICLCIVGNKIDLEKERHV----------SIQEAESYAESVGAKHY-HTSAKQNKGIEELF 157

Query: 170 DAAIKVVIK 178
               K +I+
Sbjct: 158 LDLCKRMIE 166

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 2e-14
 Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           +  Y PT+ D++   V  +     L + DTAG E +  +R L  +    F L +S+ +++
Sbjct: 29  VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS 88

Query: 91  SYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           ++ ++       L+   +  VP++LVG K DL +++               QG+ L +Q 
Sbjct: 89  TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV----------GKEQGQNLARQW 138

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIK 178
               ++E S+K++ NV  +F   ++ + +
Sbjct: 139 CNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 65.3 bits (158), Expect = 4e-14
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 14/150 (9%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT  D++   VV +G  V + + DTAGQEDY  +R   +R  + F+  FS ++  
Sbjct: 30  VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFS-ITEM 88

Query: 91  SYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
                   +  ++        VP +LVG K DL + +            +  + +    Q
Sbjct: 89  ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV----------SVEEAKNRADQ 138

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              +Y +E S+KT+ NV  VF   ++ +  
Sbjct: 139 WNVNY-VETSAKTRANVDKVFFDLMREIRA 167

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 1e-13
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 15/150 (10%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  + F+  F++ +  
Sbjct: 29  VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88

Query: 91  SYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
           S+E++  ++  +++       VP+VLVG K DL                 + Q ++L + 
Sbjct: 89  SFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAARTV-----------ESRQAQDLARS 136

Query: 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
            G  Y IE S+KT+Q V+  F   ++ + +
Sbjct: 137 YGIPY-IETSAKTRQGVEDAFYTLVREIRQ 165

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 2e-13
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 15/156 (9%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT+ D+++     +G    L + DTAGQE++  +R    R    F+L F++  R 
Sbjct: 32  VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ 91

Query: 91  SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           S+  V K +   L+       PVVLVG K DL   +              ++        
Sbjct: 92  SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQV----------PRSEASAFGASH 141

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKE 185
             +Y  E S+K + NV   F+  ++ V K    Q++
Sbjct: 142 HVAY-FEASAKLRLNVDEAFEQLVRAVRK---YQEQ 173

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.6 bits (148), Expect = 1e-12
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 57  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPV 112
           +WDTAGQE +  L    YRGAD  VL + + + +S+EN+       L H +       P 
Sbjct: 56  VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 115

Query: 113 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
           V++G K+D  E K  +++            +EL K +G       S+K   NV   F+  
Sbjct: 116 VILGNKIDAEESKKIVSEK---------SAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 166

Query: 173 IKVVIKPPQ 181
            +  ++  Q
Sbjct: 167 ARSALQQNQ 175

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 5e-12
 Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 12/149 (8%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT+ D+++   V +     L + DTAGQE++  +R    R  + F+L FS+  R 
Sbjct: 31  VTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRG 90

Query: 91  SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           S+E + K     L+       P++L+G K DL   +            T  +G++L +Q+
Sbjct: 91  SFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQV----------TQEEGQQLARQL 140

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIK 178
             +Y +E S+K + NV   F   ++V+ K
Sbjct: 141 KVTY-MEASAKIRMNVDQAFHELVRVIRK 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.9 bits (141), Expect = 1e-11
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 16/161 (9%)

Query: 33  DYIPTVFDNFSANV-VAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            Y  T+  +F     + +   V + +WDTAGQE +  L    YRGAD  VL F + +  +
Sbjct: 30  QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT 89

Query: 92  YENVLKKWIPELQHYSP----GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147
           ++ +       L   SP      P V++G K+DL   +             T + +    
Sbjct: 90  FKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV-----------ATKRAQAWCY 138

Query: 148 QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKK 188
                 Y E S+K   NV+  F    +  +K   + +   +
Sbjct: 139 SKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 179

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 2e-11
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 13/148 (8%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
            YIPTV D +   +  + +   L + DT G   +  ++ LS      F+L +S+ SR S 
Sbjct: 30  SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSL 89

Query: 93  ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
           E +  + + I E++     +P++LVG K D    +             +++ E L +   
Sbjct: 90  EELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREV----------QSSEAEALARTWK 139

Query: 151 ASYYIECSSKTQQNVKAVFDAAIKVVIK 178
            ++ +E S+K   NVK +F   + +  +
Sbjct: 140 CAF-METSAKLNHNVKELFQELLNLEKR 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.4 bits (137), Expect = 3e-11
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 58  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 117
           WDTAGQE +  L P+ YR A   ++ + +    S+           +  S  + + LVG 
Sbjct: 57  WDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGN 116

Query: 118 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 174
           K+D+ ++        G   V   +GE+L ++ G  ++ E S+KT +NV  VF    +
Sbjct: 117 KIDMLQEG-------GERKVAREEGEKLAEEKGLLFF-ETSAKTGENVNDVFLGIGE 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 6e-11
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 11/118 (9%)

Query: 57  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 116
           +WDTAG E +  L P+ YRG+   ++ + +    ++  +        QH  P + V + G
Sbjct: 57  IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 116

Query: 117 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 174
            K DL + +                 ++    I A + +E S+K   N+  +F    +
Sbjct: 117 NKCDLTDVREV----------MERDAKDYADSIHAIF-VETSAKNAININELFIEISR 163

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (129), Expect = 4e-10
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           + DY PT+ D++  +   +     L + DTAGQE+++ +R    R  D F++ +S+  +A
Sbjct: 30  VPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA 89

Query: 91  SYENVLKKWIPELQHYSPGV-PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           S+E+V +     L+       P++LV  K+DL   +           VT  QG+E+  + 
Sbjct: 90  SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKY 139

Query: 150 GASYYIECSSKTQQ-NVKAVFDAAIKVVIK 178
              Y IE S+K    NV   F   ++V+ +
Sbjct: 140 NIPY-IETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 7e-10
 Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 13/154 (8%)

Query: 23  LSVSGRSSIW------DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 76
           L  +G+++I       + + T+          E   ++  +WD  GQ+    L    ++ 
Sbjct: 8   LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 67

Query: 77  ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP 136
               +       R       ++ +  L        V+LV        +    A+      
Sbjct: 68  TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE------ 121

Query: 137 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
           +T   G    +     Y     + +   +    D
Sbjct: 122 ITDKLGLHSLRHRNW-YIQATCATSGDGLYEGLD 154

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 18/183 (9%)

Query: 3   LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYI------PTVFDNFSANVVAEGTTVNLG 56
           L  ++  LF  Q    ++  L  +G+++I           T     S             
Sbjct: 3   LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFL 62

Query: 57  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLV 115
           +WD  GQE         Y   +  ++      R       ++    L H       +++ 
Sbjct: 63  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 122

Query: 116 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA---A 172
             K D++E          +  ++        K     +   C + T + +    +     
Sbjct: 123 ANKQDVKECMT-------VAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWMMSR 174

Query: 173 IKV 175
           +K+
Sbjct: 175 LKI 177

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 8e-09
 Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 13/170 (7%)

Query: 7   LACLFATQVTSFLLYVLSVSGRSSI------WDYIPTVFDNFSANVVAEGTTVNLGLWDT 60
           L+ +F  +    L+  L  +G+++I         + T+              V   +WD 
Sbjct: 4   LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 63

Query: 61  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 120
            GQ+    L    Y G    +       R   +   ++    +        ++L+     
Sbjct: 64  GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA--- 120

Query: 121 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
              +K  L D      +    G    +     Y     + +   +     
Sbjct: 121 ---NKQDLPDAMKPHEIQEKLGLTRIRDRNW-YVQPSCATSGDGLYEGLT 166

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 33  DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
               T  + +   ++ +G T  + + + AG  D           AD  +  FSL    S+
Sbjct: 32  VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKF-----SGWADAVIFVFSLEDENSF 86

Query: 93  ENV--LKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           + V  L   +  L+     G+ + LVGT+  +               V  A+   L   +
Sbjct: 87  QAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPR--------VVGDARARALCADM 138

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184
               Y E  +    NV  VF    + V+   ++Q+
Sbjct: 139 KRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 3e-08
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 15/150 (10%)

Query: 33  DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
            Y+ T+               +   +WDTAGQE +  LR   Y  A   ++ F + SR +
Sbjct: 31  KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT 90

Query: 92  YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
           Y+NV   W  +L      +P+VL G K+D+++ K               + + L+     
Sbjct: 91  YKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI------VFHRKKNLQ----- 138

Query: 152 SYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 181
             Y + S+K+  N +  F    + +I  P 
Sbjct: 139 --YYDISAKSNYNFEKPFLWLARKLIGDPN 166

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 14/150 (9%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           IW+Y PT+   +      +   V++ + DTAGQED  + R    R  + FVL + +  R 
Sbjct: 28  IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRG 86

Query: 91  SYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           S+E VL       +   P  V ++LVG K DL   +            +T +GE+L  ++
Sbjct: 87  SFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQV----------STEEGEKLATEL 136

Query: 150 GASYYIECSSKTQQ-NVKAVFDAAIKVVIK 178
             ++Y ECS+ T + N+  +F    + V +
Sbjct: 137 ACAFY-ECSACTGEGNITEIFYELCREVRR 165

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 28/190 (14%), Positives = 52/190 (27%), Gaps = 37/190 (19%)

Query: 23  LSVSGRSSI--------WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY 74
              SG+S+            +PT           +  +V   + D  GQ    R     +
Sbjct: 10  TGESGKSTFIKQMRIIHGSGVPTTGIIE---YPFDLQSVIFRMVDVGGQRSERRKWIHCF 66

Query: 75  RGADVFVLAFSLVSRASYENV----------LKKWIPELQHYS-PGVPVVLVGTKLDLRE 123
                 +   +L                      +   + +       V+L   K DL E
Sbjct: 67  ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE 126

Query: 124 DK-------HYLADHPGLVPVTTAQGEELRKQIGAS--------YYIECSSKTQQNVKAV 168
           +K        Y  ++ G      A  E + K             Y     +   +N++ V
Sbjct: 127 EKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV 186

Query: 169 FDAAIKVVIK 178
           F A    +++
Sbjct: 187 FAAVKDTILQ 196

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 9/124 (7%)

Query: 52  TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GV 110
              L +WD  GQ          +   D+ +       R  +E   ++    L+      V
Sbjct: 59  GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV 118

Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
           PV++   K DL               +         +         CS+ T + V+   +
Sbjct: 119 PVLIFANKQDLLTAAP-------ASEIAEGLNLHTIRDRVW-QIQSCSALTGEGVQDGMN 170

Query: 171 AAIK 174
              K
Sbjct: 171 WVCK 174

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 46.1 bits (108), Expect = 4e-07
 Identities = 25/167 (14%), Positives = 46/167 (27%), Gaps = 15/167 (8%)

Query: 19  LLYVLSVSGRSSI-----WDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPL 72
           L+  L  +G+++I        + T       NV       + L +WD  GQ         
Sbjct: 21  LILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC 80

Query: 73  SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADH 131
            Y      +       +       K+    LQ        +++   K D           
Sbjct: 81  YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ-------PGA 133

Query: 132 PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
                V+        K    S  +  S+   + +    D  I V+ +
Sbjct: 134 LSASEVSKELNLVELKDRSWSI-VASSAIKGEGITEGLDWLIDVIKE 179

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 4e-07
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 12/129 (9%)

Query: 50  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG 109
              V L LWDTAGQE+++ +    YRGA   VL FS   R S+E +   W  ++      
Sbjct: 48  DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGD 106

Query: 110 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
           +P  LV              D      +   + E L K++   +Y   S K   NV  VF
Sbjct: 107 IPTALV----------QNKIDLLDDSCIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 155

Query: 170 DAAIKVVIK 178
               +  ++
Sbjct: 156 KYLAEKHLQ 164

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 45.5 bits (106), Expect = 7e-07
 Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 15/161 (9%)

Query: 23  LSVSGRSSIWDYIPTVFDNFSANVVAEGTT--------VNLGLWDTAGQEDYNRLRPLSY 74
           L  +G++++   +    D    +V     T        +    +D  G     R+     
Sbjct: 21  LDNAGKTTLLHML--KDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYL 78

Query: 75  RGADVFVLAFSLVSRASYENVLKKWI-PELQHYSPGVPVVLVGTKLDLREDKHY--LADH 131
              +  V               ++            VP++++G K+D  E      L + 
Sbjct: 79  PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREM 138

Query: 132 PGLVPVTTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFD 170
            GL   TT +G    K++ A       CS   +Q     F 
Sbjct: 139 FGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.1 bits (105), Expect = 9e-07
 Identities = 14/155 (9%), Positives = 33/155 (21%), Gaps = 7/155 (4%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           T+ L  +        +    PT               +    +D  G     RL    + 
Sbjct: 14  TTLLHMLK----NDRLATLQPTWHPTS---EELAIGNIKFTTFDLGGHIQARRLWKDYFP 66

Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 135
             +  V          ++    +               ++        +    A+    +
Sbjct: 67  EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSAL 126

Query: 136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
            +    G +  +         CS   +      F 
Sbjct: 127 GLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 17/143 (11%)

Query: 33  DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL-RPLSYRGADVFVLAFSLVSRA 90
               T+  +F    V  +G  + + LWDTAGQE + +      YR     V  + + + A
Sbjct: 30  RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA 89

Query: 91  SYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           S+ ++        QH  +  +P +LVG K DLR                T   ++     
Sbjct: 90  SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQV----------PTDLAQKFADTH 139

Query: 150 GASYYIECSSKTQQ---NVKAVF 169
               + E S+K      +V+A+F
Sbjct: 140 SMPLF-ETSAKNPNDNDHVEAIF 161

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 34/187 (18%)

Query: 23  LSVSGRSSI-----WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 77
              SG+S+I       +                  ++  ++D  GQ    +     + G 
Sbjct: 10  AGESGKSTIVKQMKIIHEAGTGIVE---THFTFKDLHFKMFDVGGQRSERKKWIHCFEGV 66

Query: 78  DVFVLAFSLVSRASYENV----------LKKWIPELQHYS-PGVPVVLVGT-------KL 119
              +   +L                   +K +     +       ++L          K+
Sbjct: 67  TAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 126

Query: 120 DLREDKHYLADHPGLVPVTTAQGEELRKQIGAS--------YYIECSSKTQQNVKAVFDA 171
                     ++ G      A      +    +        Y     +   +NV+ VFDA
Sbjct: 127 KKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 186

Query: 172 AIKVVIK 178
              V+IK
Sbjct: 187 VTDVIIK 193

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 7e-06
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 12/149 (8%)

Query: 31  IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
           +  Y PT+ + F+  +   G   +L L DTAGQ++Y+          + ++L +S+ S  
Sbjct: 30  VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK 89

Query: 91  SYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
           S+E +       L       +P++LVG K DL  ++            +  +G+ L +  
Sbjct: 90  SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI----------SYEEGKALAESW 139

Query: 150 GASYYIECSSKTQQNVKAVFDAAIKVVIK 178
            A++ +E S+K  Q    VF   I    K
Sbjct: 140 NAAF-LESSAKENQTAVDVFRRIILEAEK 167

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 13/164 (7%)

Query: 17  SFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 76
           S L  + +    S   D      D +   ++ +G +  + L D    +  N         
Sbjct: 17  STLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 76

Query: 77  ADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL 134
                L    ++  +      +   +L+       +P++LVG K DL   +         
Sbjct: 77  VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV------- 129

Query: 135 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
              + ++G          + IE S+  Q NVK +F+  ++ V  
Sbjct: 130 ---SVSEGRACAVVFDCKF-IETSAAVQHNVKELFEGIVRQVRL 169

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 22/190 (11%), Positives = 48/190 (25%), Gaps = 37/190 (19%)

Query: 23  LSVSGRSSI-------WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
              SG+S+            PT   +       E   V   + D  GQ    +     + 
Sbjct: 10  AGESGKSTFLKQMRIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQRSERKRWFECFD 66

Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----------PGVPVVLVGT------- 117
                +   S           ++     +  +             V ++L          
Sbjct: 67  SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE 126

Query: 118 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS---------YYIECSSKTQQNVKAV 168
           K+ +   K Y  +  G         + L +              Y+   ++   +N++ V
Sbjct: 127 KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 186

Query: 169 FDAAIKVVIK 178
           F      ++ 
Sbjct: 187 FRDVKDTILH 196

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 16  TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
           ++         G              +  ++V +G   +L ++D   Q+    L      
Sbjct: 15  SALARIF----GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMA 70

Query: 76  GADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGTKLDLREDKHYLADHPGL 134
             D +V+ +S+  + S+E   +  +   +      VP++LVG K DL   +         
Sbjct: 71  MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV------- 123

Query: 135 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKK 187
              +  +G          + IE S+    NV+A+F+  ++ +    + +++ K
Sbjct: 124 ---SVDEGRACAVVFDCKF-IETSAALHHNVQALFEGVVRQI----RLRRDSK 168

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 9/123 (7%)

Query: 57  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLV 115
           +WD  GQ+         +   D  +       R   ++  ++    L      G  +++ 
Sbjct: 50  IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF 109

Query: 116 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 175
             K DL                     E    +        CS+ T +++    D  +  
Sbjct: 110 ANKQDLPGALS--------CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 161

Query: 176 VIK 178
           +  
Sbjct: 162 ISS 164

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 7e-04
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 104 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
           +    G+PV+++G K DL               +         +          S K + 
Sbjct: 99  KPQLQGIPVLVLGNKRDLPGALDE-------KELIEKMNLSAIQDREICC-YSISCKEKD 150

Query: 164 NVKAVFDAAIK 174
           N+       I+
Sbjct: 151 NIDITLQWLIQ 161

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 17/163 (10%), Positives = 42/163 (25%), Gaps = 15/163 (9%)

Query: 23  LSVSGRSSI------WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 76
           L  +G+++I       + + T+              +   +WD  G           Y  
Sbjct: 13  LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSN 72

Query: 77  ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLV 135
            D  +       R        + +  L+        +V+   K D+ +            
Sbjct: 73  TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMA---- 128

Query: 136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178
               + G    K        + S+     +    +  ++ +  
Sbjct: 129 ---NSLGLPALKDRKWQI-FKTSATKGTGLDEAMEWLVETLKS 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.89
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.89
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.84
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.83
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.83
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.83
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.81
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.79
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.77
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.77
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.76
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.71
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.69
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.65
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.61
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.58
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.53
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.49
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.33
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.33
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.28
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.28
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.27
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.26
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.2
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.14
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.89
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.68
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.68
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.56
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.56
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.48
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.47
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.46
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.42
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.31
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.24
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.95
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.22
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.97
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.45
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.05
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.82
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.77
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.71
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.11
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	93.87
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	93.87
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.82
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.75
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.69
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	93.67
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	93.59
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	93.49
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	93.37
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.31
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	93.28
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.19
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	92.99
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	92.95
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	92.94
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	92.91
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.81
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	92.6
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.56
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	92.52
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	92.51
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	92.49
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	92.42
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.39
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	92.23
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.19
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.16
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	92.13
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.12
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	91.98
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	91.76
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	91.66
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	91.62
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	91.42
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	91.29
d1g2912	240	Maltose transport protein MalK, N-terminal domain	91.28
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	91.28
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	91.23
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	91.23
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	91.12
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	91.12
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	91.01
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	91.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	90.93
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	90.93
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	90.86
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	90.72
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	90.49
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.44
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	90.44
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	90.4
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	90.39
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	90.22
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	90.21
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.1
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	89.86
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	89.78
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.73
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	89.52
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	89.08
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	88.57
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	88.51
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.36
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	88.36
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	87.65
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	87.57
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	87.25
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	87.18
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.04
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	86.85
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	86.82
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	86.43
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	85.6
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.43
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	85.21
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	85.12
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	85.07
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	84.46
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	84.06
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	83.87
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	83.17
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	82.86
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	82.66
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.66
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	82.5
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	82.39
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	82.09
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	81.86
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	81.67
d1pvda1	179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	81.35
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	81.01
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	80.98
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	80.95
d1ovma1	161	Indole-3-pyruvate decarboxylase {Enterobacter cloa	80.91
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	80.89
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	80.6
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	80.28
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	80.25
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	80.1
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	80.08

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-41  Score=245.81  Aligned_cols=189  Identities=43%  Similarity=0.735  Sum_probs=162.8

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      |. .+||+++|+++|| ||||+++|+++.+...+.||++..+.....+++..+.+.+||++|++++..++..+++++|++
T Consensus         1 m~-~iKvvllG~~~vG-KTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~   78 (191)
T d2ngra_           1 MQ-TIKCVVVGDGAVG-KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF   78 (191)
T ss_dssp             CE-EEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CC-ceEEEEECCCCcC-HHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhccccccee
Confidence            55 5799999999999 999999999999999999999988888888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      ++|||+++++||+++...|...+....++.|+++||||+|+.+......  .......+..+++++++++++..+|+|+|
T Consensus        79 ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (191)
T d2ngra_          79 LVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECS  158 (191)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECC
T ss_pred             ecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEe
Confidence            9999999999999996667888877778999999999999976543211  11233457899999999998766999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEe
Q 028595          159 SKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  196 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~  196 (207)
                      |++|.||+++|+.+++.++++++.     +++.+|++|
T Consensus       159 Ak~~~~V~e~f~~l~~~~~~~~~~-----k~~~~C~i~  191 (191)
T d2ngra_         159 ALTQKGLKNVFDEAILAALEPPEP-----KKSRRCVLL  191 (191)
T ss_dssp             TTTCTTHHHHHHHHHHHHTSCCST-----TCCCSCCCC
T ss_pred             CCCCcCHHHHHHHHHHHHhcCcCC-----CCCCCCeEC
Confidence            999999999999999999887542     334457664

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-39  Score=233.30  Aligned_cols=175  Identities=40%  Similarity=0.701  Sum_probs=154.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ++.||+++|+++|| ||||+++|+++.+...+.||+++.+.....+++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         1 ~r~KivvvG~~~vG-KTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   79 (177)
T d1kmqa_           1 IRKKLVIVGDGACG-KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILM   79 (177)
T ss_dssp             CEEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCcC-HHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhh
Confidence            36899999999999 99999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++|++++...|...+....+++|++|||||+|+.+.+....  .....+.+..++++.++++++..+|+||||+
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAk  159 (177)
T d1kmqa_          80 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK  159 (177)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             hcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCC
Confidence            99999999999986778888888778999999999999976432110  0112234688999999999997799999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      +|.||+++|+.+++.+++
T Consensus       160 t~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         160 TKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHhC
Confidence            999999999999998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-39  Score=235.59  Aligned_cols=176  Identities=44%  Similarity=0.778  Sum_probs=155.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|+++|| ||||+++|+++.+...+.||+++.+...+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus         8 ~~~Ki~lvG~~~vG-KTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il   86 (185)
T d2atxa1           8 LMLKCVVVGDGAVG-KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   86 (185)
T ss_dssp             EEEEEEEEECTTSS-HHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCC-HHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence            36899999999999 99999999999999999999998888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++||+++...|...+....+++|+++||||+|+.+......  .....+.++.++++++++.++..+|+||||+
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk  166 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  166 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCC
Confidence            99999999999886788888887778999999999999976432211  1123355789999999999996699999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.||+++|+.++++++.|
T Consensus       167 ~~~gv~e~F~~li~~il~P  185 (185)
T d2atxa1         167 TQKGLKTVFDEAIIAILTP  185 (185)
T ss_dssp             TCTTHHHHHHHHHHHHHCC
T ss_pred             CCcCHHHHHHHHHHHHcCC
Confidence            9999999999999998754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.7e-39  Score=232.69  Aligned_cols=162  Identities=28%  Similarity=0.421  Sum_probs=147.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|+++|| ||||+++|+.+++...|.||+++.+...+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vG-KTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           4 LHKVIMVGSGGVG-KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcC-HHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            4799999999999 999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++++++.+ ..|++.+.+..  +++|+++||||+|+.+.+.+          ..++++.+++.+++ +|+||||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~Sak~  150 (168)
T d1u8za_          83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQV----------SVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             eeccchhhhhhH-HHHHHHHHHhhCCCCCcEEEEeccccccccccc----------cHHHHHHHHHHcCC-eEEEEcCCC
Confidence            999999999999 78988886543  68999999999999877664          89999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      |.||+++|+++++.+..
T Consensus       151 g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHC
Confidence            99999999999998754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-39  Score=229.69  Aligned_cols=162  Identities=25%  Similarity=0.324  Sum_probs=149.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|+++|| ||||+++|+++.+...+.||.+..+...+.+++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         3 k~~Kv~liG~~~vG-KTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVG-KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSS-HHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcC-HHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            45799999999999 99999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++|++.+ ..|+..+.+..  +++|+++||||+|+...+.+          +.++++++++++++ +|+|+||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v----------~~~~~~~~a~~~~~-~~~e~Sak  149 (167)
T d1xtqa1          82 VYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI----------SYEEGKALAESWNA-AFLESSAK  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEECCTT
T ss_pred             hcccchhhhhhhh-hhhhhhhhhcccccccceeeeccccccccccch----------hHHHHHHHHHHcCC-EEEEEecC
Confidence            9999999999999 78887775543  57999999999999877664          89999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 028595          161 TQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~  177 (207)
                      +|.||+++|+.+++.+.
T Consensus       150 ~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         150 ENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-39  Score=229.73  Aligned_cols=162  Identities=27%  Similarity=0.393  Sum_probs=150.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      -.||+++|.++|| ||||+++|+++.+...+.||++..+ ......++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~iKv~liG~~~vG-KSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   80 (164)
T d1z2aa1           2 AIKMVVVGNGAVG-KSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   80 (164)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eEEEEEECCCCcC-HHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEE
Confidence            4699999999999 9999999999999999999998665 6688889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |||+++++|++.+ ..|++.+.+..+++|+++||||+|+.+.+.+          ..++++++++.+++ +|+++||++|
T Consensus        81 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~Sak~g  148 (164)
T d1z2aa1          81 VFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSCI----------KNEEAEGLAKRLKL-RFYRTSVKED  148 (164)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCSS----------CHHHHHHHHHHHTC-EEEECBTTTT
T ss_pred             EEeccchhhhhhc-ccccccccccCCCceEEEeeccCCcccceee----------eehhhHHHHHHcCC-EEEEeccCCC
Confidence            9999999999998 8999999887789999999999999877764          88999999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHhC
Q 028595          163 QNVKAVFDAAIKVVIK  178 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~  178 (207)
                      .||+++|+.|++.+++
T Consensus       149 ~~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         149 LNVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             BSSHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhC
Confidence            9999999999998864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-39  Score=231.03  Aligned_cols=161  Identities=20%  Similarity=0.291  Sum_probs=133.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      +||+++|.++|| ||||+++|.+..+. .+.++.+..+...+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         2 fKi~lvG~~~vG-KTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVG-KSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSS-HHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcC-HHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            799999999999 99999999988754 4567777888888899999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |+++++|++++ ..|+..+....  +.+|+++||||+|+.+.+++          +..+++++++.+++ +|+||||++|
T Consensus        80 d~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~Sak~~  147 (168)
T d2gjsa1          80 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSREV----------SVDEGRACAVVFDC-KFIETSAALH  147 (168)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHCC--CCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTS-EEEECBTTTT
T ss_pred             ccccccccccc-ccccchhhcccccccceEEEeecccchhhhcch----------hHHHHHHHHHhcCC-EEEEEeCCCC
Confidence            99999999999 78988886654  57899999999999877664          88999999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHhCC
Q 028595          163 QNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~~~  179 (207)
                      .||+++|+.+++.+..+
T Consensus       148 ~~v~~~f~~l~~~i~~~  164 (168)
T d2gjsa1         148 HNVQALFEGVVRQIRLR  164 (168)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999887643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-38  Score=230.75  Aligned_cols=164  Identities=26%  Similarity=0.398  Sum_probs=150.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|+++|| ||||+++|+++.+...+.||..+.+...+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         6 ~~Kv~lvG~~~vG-KTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v   84 (173)
T d2fn4a1           6 THKLVVVGGGGVG-KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV   84 (173)
T ss_dssp             EEEEEEEECTTSS-HHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred             eEEEEEECCCCcC-HHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeee
Confidence            5799999999999 999999999999999999998888888899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++|++.+ ..|+..+.+.  .+++|++|||||+|+...+..          ..++++.+++.+++ +|++|||++
T Consensus        85 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sak~  152 (173)
T d2fn4a1          85 FAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQV----------PRSEASAFGASHHV-AYFEASAKL  152 (173)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECBTTT
T ss_pred             cccccccccchh-hhhhHHHHHHhccCCCceEEEEEeechhhcccc----------chhhhhHHHHhcCC-EEEEEeCCC
Confidence            999999999999 7888777543  268999999999999877654          88999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCC
Q 028595          162 QQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~  180 (207)
                      |.||+++|+.+++.+.+.+
T Consensus       153 g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         153 RLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             TBSHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHHHh
Confidence            9999999999999886543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-38  Score=229.14  Aligned_cols=162  Identities=27%  Similarity=0.397  Sum_probs=150.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|++++| ||||+++|+++.+.+.+.||.++.+...+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         4 t~Ki~lvG~~~vG-KTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVG-KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcC-HHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            4799999999999 999999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++|+..+ ..|+..+.+..  .+.|++++|||+|+.+.+.+          +.++++++++.+++ +|+|+||++
T Consensus        83 ~d~~d~~Sf~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v----------~~e~~~~~~~~~~~-~~~e~Sak~  150 (169)
T d1x1ra1          83 YSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRKV----------TRDQGKEMATKYNI-PYIETSAKD  150 (169)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS----------CHHHHHHHHHHHTC-CEEEEBCSS
T ss_pred             cccccchhhhcc-chhhHHHHhhccccCccEEEEecccchhhhcee----------ehhhHHHHHHHcCC-EEEEEcCCC
Confidence            999999999999 78888876543  57999999999999887764          88999999999998 999999998


Q ss_pred             CC-CHHHHHHHHHHHHhC
Q 028595          162 QQ-NVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~-~i~~~f~~i~~~~~~  178 (207)
                      +. ||+++|+.+++.+.+
T Consensus       151 ~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         151 PPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             SCBSHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            86 999999999998864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-39  Score=230.41  Aligned_cols=165  Identities=27%  Similarity=0.466  Sum_probs=148.3

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      |+..+||+++|.++|| ||||+++|+++.+...+.||.++.+...+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 m~~~~Ki~lvG~~~vG-KTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (171)
T d2erya1           2 MQEKYRLVVVGGGGVG-KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGF   80 (171)
T ss_dssp             CCCEEEEEEEECTTSS-HHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEE
T ss_pred             CCcceEEEEECCCCCC-HHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceE
Confidence            7888999999999999 999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      ++|||+++++|++.+ ..|...+.+..  ...|+++||||+|+...+.+          ..++++++++.+++ +|++||
T Consensus        81 ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~S  148 (171)
T d2erya1          81 LLVFSVTDRGSFEEI-YKFQRQILRVKDRDEFPMILIGNKADLDHQRQV----------TQEEGQQLARQLKV-TYMEAS  148 (171)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSS----------CHHHHHHHHHHTTC-EEEECB
T ss_pred             EEeeccccccchhhH-HHHhHHHHhhcccCCCCEEEEEeccchhhhccc----------hHHHHHHHHHHcCC-EEEEEc
Confidence            999999999999999 77877665432  57999999999999877664          88999999999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028595          159 SKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~~  178 (207)
                      |++|.||+++|..|++.+.+
T Consensus       149 ak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         149 AKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999998753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-38  Score=227.55  Aligned_cols=163  Identities=27%  Similarity=0.440  Sum_probs=142.2

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|+++|| ||||+++|+++.+.+.+.||.+..+ ......++..+.+.+||++|++.+..++..+++++|++|
T Consensus         2 y~fKivlvG~~~vG-KTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (167)
T d1z08a1           2 YSFKVVLLGEGCVG-KTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   80 (167)
T ss_dssp             EEEEEEEECCTTSC-HHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             ceEEEEEECCCCcC-HHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeE
Confidence            46899999999999 9999999999999999999998777 447778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||+++++|++.+ ..|+..+.... +..|++++|||+|+...+.+          +.++++++++.+++ +|+||||+
T Consensus        81 ~v~d~~~~~Sf~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v----------~~~e~~~~a~~~~~-~~~e~Sak  148 (167)
T d1z08a1          81 LVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERHV----------SIQEAESYAESVGA-KHYHTSAK  148 (167)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEEEBTT
T ss_pred             EEEeCCchhHHHhh-hhhhhhcccccccccceeeecccccccccccc----------chHHHHHHHHHcCC-eEEEEecC
Confidence            99999999999999 67777665544 67899999999999887764          89999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      +|.||+++|++|++.+++
T Consensus       149 ~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         149 QNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TTBSHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHhh
Confidence            999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-39  Score=230.31  Aligned_cols=161  Identities=25%  Similarity=0.369  Sum_probs=146.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.++|| ||||+++|+++.+...+.||+++.+.....+++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 ~~Ki~viG~~~vG-KTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVG-KSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            3799999999999 999999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc---CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           84 FSLVSRASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      ||+++++++.++ ..|...+.+.   .+++|+++||||+|+.+.+.+          ..++++++++.+++ +|+||||+
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v----------~~~e~~~~~~~~~~-~~~e~Sak  148 (171)
T d2erxa1          81 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSREV----------QSSEAEALARTWKC-AFMETSAK  148 (171)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTC-EEEECBTT
T ss_pred             eecccccchhcc-cchhhhhhhhhccCCCCcEEEEeecccccccccc----------cHHHHHHHHHHcCC-eEEEEcCC
Confidence            999999999999 6777666442   267999999999999877764          88999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 028595          161 TQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~  177 (207)
                      +|.||+++|+.|++.+.
T Consensus       149 ~~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         149 LNHNVKELFQELLNLEK  165 (171)
T ss_dssp             TTBSHHHHHHHHHHTCC
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999999997654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-38  Score=230.17  Aligned_cols=177  Identities=51%  Similarity=0.826  Sum_probs=156.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|+++|| ||||+++|+.+.+...+.||+++.+...+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus         4 ~~iKivviG~~~vG-KTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           4 QAIKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             EEEEEEEECSTTSS-HHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeEEEEEECCCCCC-HHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            46899999999999 99999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC--CCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++|++++...|...+....+++|++|||||+|+.+.+.+...  ..........++..+++.++..+|+||||+
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk  162 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCC
Confidence            999999999999966688888887789999999999998765432110  112233577899999999996699999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCC
Q 028595          161 TQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~  180 (207)
                      +|.||+++|+.+++.+++++
T Consensus       163 ~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         163 TQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TCTTHHHHHHHHHHHHSCCC
T ss_pred             CCcCHHHHHHHHHHHHcCCC
Confidence            99999999999999998775

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-37  Score=224.37  Aligned_cols=164  Identities=26%  Similarity=0.509  Sum_probs=148.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.++|| ||||+++|.++.+...+.|+.+.++ ...+..++..+.+.+|||||++.+..++..+++++|++|
T Consensus         4 ~~~Ki~vvG~~~vG-KTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           4 YMFKILIIGNSSVG-KTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             EEEEEEEECSTTSS-HHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             eEEEEEEECCCCcC-HHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            46899999999999 9999999999999999999988665 557888899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||+++++++..+ ..|...+.... +..|++++|||+|+.+.+.+          ..++++++++.+++ +|++|||+
T Consensus        83 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v----------~~~~~~~~~~~~~~-~~~e~Sak  150 (169)
T d3raba_          83 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERVV----------SSERGRQLADHLGF-EFFEASAK  150 (169)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECccchhhhhh-hhhhhhhhcccCCcceEEEEEeeccccccccc----------chhhhHHHHHHcCC-EEEEecCC
Confidence            99999999999999 66666665544 68999999999999877664          88999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028595          161 TQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~  179 (207)
                      +|.||+++|+++++.+.++
T Consensus       151 ~g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         151 DNINVKQTFERLVDVICEK  169 (169)
T ss_dssp             TTBSHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHhhC
Confidence            9999999999999998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=227.47  Aligned_cols=161  Identities=29%  Similarity=0.431  Sum_probs=144.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|+++|| ||||+++|+++.+.+.|.||++..+...+..++..+.+.+||++|++.+. ....+++++|++++|
T Consensus         2 eiKi~lvG~~~vG-KTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVG-KSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCC-HHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            4799999999999 99999999999999999999999998888899999999999999998874 456788999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhh--cCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQH--YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~--~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++|+..+ ..|...+..  ..++.|+++||||+|+.+.+.+          +.++++++++++++ +|+||||++
T Consensus        80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V----------~~~e~~~~a~~~~~-~~~e~Sakt  147 (168)
T d2atva1          80 YDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQV----------STEEGEKLATELAC-AFYECSACT  147 (168)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTS-EEEECCTTT
T ss_pred             cccCCccchhhh-hhhcccccccccccCcceeeeccchhhhhhccC----------cHHHHHHHHHHhCC-eEEEEcccc
Confidence            999999999999 666655543  2368999999999999877664          89999999999998 999999999


Q ss_pred             CC-CHHHHHHHHHHHHhC
Q 028595          162 QQ-NVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~-~i~~~f~~i~~~~~~  178 (207)
                      |+ ||+++|..+++.+.+
T Consensus       148 g~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         148 GEGNITEIFYELCREVRR  165 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            98 599999999998754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-39  Score=231.70  Aligned_cols=164  Identities=24%  Similarity=0.359  Sum_probs=142.9

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      +.+||+++|+++|| ||||+++|+++.+...+.||++..+ ...+..++..+.+.+||++|++.+..+++.+++++|+++
T Consensus         2 ~~~Ki~vvG~~~vG-KTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   80 (170)
T d1i2ma_           2 VQFKLVLVGDGGTG-KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   80 (170)
T ss_dssp             EEEEEEEEECTTSS-HHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEE
T ss_pred             eeEEEEEECCCCcC-HHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchh
Confidence            56899999999999 9999999999999999999998766 557778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      +|||+++++|++.+ ..|+..+.+..+++|+++||||+|+...+.            .+++..+++..++ +|+|+||++
T Consensus        81 lv~d~~~~~Sf~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~------------~~~~~~~~~~~~~-~~~e~Sak~  146 (170)
T d1i2ma_          81 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKS  146 (170)
T ss_dssp             EEEETTSGGGGTTH-HHHHHHHHHHHCSCCEEEEEECCCCSCSCC------------TTTSHHHHSSCSS-EEEEEBTTT
T ss_pred             hccccccccccchh-HHHHHHHhhccCCCceeeecchhhhhhhhh------------hhHHHHHHHHcCC-EEEEEeCCC
Confidence            99999999999999 788888877778999999999999976653            3456678888888 999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCc
Q 028595          162 QQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~~~~  181 (207)
                      |.||+++|++|++.++..++
T Consensus       147 ~~~v~e~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         147 NYNFEKPFLWLARKLIGDPN  166 (170)
T ss_dssp             TBTTTHHHHHHHHHHHTCTT
T ss_pred             CCCHHHHHHHHHHHHccCCC
Confidence            99999999999999986543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-37  Score=224.38  Aligned_cols=163  Identities=28%  Similarity=0.437  Sum_probs=148.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.++|| ||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+++.+++++|+++
T Consensus         4 ~~~Ki~lvG~~~vG-KTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           4 FLFKIVLIGNAGVG-KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             EEEEEEEEESTTSS-HHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             EEEEEEEECCCCcC-HHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            46899999999999 9999999999999988899988776 567888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++.++..+ ..|...+.+.. ..+|+++||||+|+.+...+          ..++++.+++.+++ +|++|||+
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v----------~~~~~~~~~~~~~~-~~~~~SAk  150 (171)
T d2ew1a1          83 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERREV----------SQQRAEEFSEAQDM-YYLETSAK  150 (171)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCSS----------CHHHHHHHHHHHTC-CEEECCTT
T ss_pred             Eeeecccchhhhhh-hhhhhhhcccccccccEEEEEeecccccccch----------hhhHHHHHHHhCCC-EEEEEccC
Confidence            99999999999999 66777765544 67999999999999877664          88999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      +|.||+++|.+++++++.
T Consensus       151 tg~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         151 ESDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-37  Score=225.85  Aligned_cols=176  Identities=33%  Similarity=0.593  Sum_probs=154.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ++.||+++|.++|| ||||+++|+.+.+...+.||+++.+...+.+++..+.+.+||++|++.+..+++.+++++|++|+
T Consensus         1 ~~~KivliG~~~vG-KTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~il   79 (179)
T d1m7ba_           1 VKCKIVVVGDSQCG-KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   79 (179)
T ss_dssp             CEEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcC-HHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhhe
Confidence            36799999999999 99999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||+++++||+.+...|...+....+++|+++||||+|+........  .....+.++.+++..++++++..+|+||||+
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk  159 (179)
T d1m7ba_          80 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  159 (179)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred             eeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCC
Confidence            99999999999986677777877778999999999999875422110  1223445789999999999987799999999


Q ss_pred             CCCC-HHHHHHHHHHHHhCC
Q 028595          161 TQQN-VKAVFDAAIKVVIKP  179 (207)
Q Consensus       161 ~~~~-i~~~f~~i~~~~~~~  179 (207)
                      +|.| ++++|+.+++.++++
T Consensus       160 ~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         160 QSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             TBHHHHHHHHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            9985 999999999998753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=224.03  Aligned_cols=162  Identities=23%  Similarity=0.393  Sum_probs=148.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|+++|| ||||+++|+.+.+...+.||++..+...+.+++..+.+.+||++|++.+..+++.+++++|++|+|
T Consensus         3 ~~KivvvG~~~vG-KTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVG-KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCC-HHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            4699999999999 999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++|++.+ ..|+..+.+.  .+++|+++||||+|+.....+          ..+++..++++++..+|+||||++
T Consensus        82 ~d~~~~~sf~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~e~Sak~  150 (167)
T d1c1ya_          82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERVV----------GKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             eeccchhhhHhH-HHHHHHHHHhcCCCCCeEEEEEEecCccccccc----------chhHHHHHHHHhCCCEEEEEcCCC
Confidence            999999999999 7787776543  368999999999999877664          889999999986545999999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028595          162 QQNVKAVFDAAIKVVI  177 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~  177 (207)
                      |.||+++|+++++.+.
T Consensus       151 g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHhc
Confidence            9999999999998875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=222.14  Aligned_cols=162  Identities=23%  Similarity=0.444  Sum_probs=147.2

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|+++|| ||||+++|.++++...+.++.+..+ .....+++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~y~~KivlvG~~~vG-KTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVG-KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             SEEEEEEEECSTTSS-HHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cEEEEEEEECCCCcC-HHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            346899999999999 9999999999999999888888776 55778899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++|||+++++|+..+ ..|+..+.+.. +..|++++|||+|+.+....          ..++++.+++.+++ +|++|||
T Consensus        81 ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa  148 (166)
T d1z0fa1          81 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRDV----------TYEEAKQFAEENGL-LFLEASA  148 (166)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEeccCchHHHHHH-HHHHHHHHhhccccceEEEEcccccchhhccc----------HHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999999 67777776554 68999999999999877664          88899999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028595          160 KTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~  176 (207)
                      ++|.||+++|.++++.+
T Consensus       149 ktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         149 KTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999999876

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=222.76  Aligned_cols=160  Identities=29%  Similarity=0.417  Sum_probs=145.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      +||+++|.++|| ||||+++|.++++...+.|+.+..+ ......++..+.+.+||++|++.+...+..++.++|++++|
T Consensus         1 fKv~vvG~~~vG-KTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv   79 (164)
T d1yzqa1           1 FKLVFLGEQSVG-KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVV   79 (164)
T ss_dssp             CEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             CEEEEECCCCcC-HHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEe
Confidence            599999999999 9999999999999999999988666 45677788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ||++++++++.+ ..|+..+.... +++|+++||||+|+.+.+.+          ..++++++++.+++ +|+||||++|
T Consensus        80 ~d~~~~~s~~~i-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~SAk~g  147 (164)
T d1yzqa1          80 YDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQV----------SIEEGERKAKELNV-MFIETSAKAG  147 (164)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred             eccccccchhhh-HhhHHHHHHhcCCCceEEEEecccchhhhhhh----------hHHHHHHHHHHcCC-EEEEecCCCC
Confidence            999999999999 67776665544 78999999999999877664          88999999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028595          163 QNVKAVFDAAIKVVI  177 (207)
Q Consensus       163 ~~i~~~f~~i~~~~~  177 (207)
                      .||+++|++|++++.
T Consensus       148 ~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         148 YNVKQLFRRVAAALP  162 (164)
T ss_dssp             TTHHHHHHHHHHHSC
T ss_pred             cCHHHHHHHHHHhhC
Confidence            999999999999875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=224.08  Aligned_cols=161  Identities=25%  Similarity=0.424  Sum_probs=148.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|+++|| ||||+++|+++.+...+.||+++.+.....+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         3 ~~Ki~lvG~~~vG-KTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           3 EYKVVVLGSGGVG-KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcC-HHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            4799999999999 999999999999999999999988888899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||+++++++..+ ..|...+....  +++|++|||||+|+.+.+.+          ..++++.+++.+++ +|++|||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sak~  149 (167)
T d1kaoa_          82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESEREV----------SSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             eeecchhhhhhh-hchhhhhhhhccCCCCCEEEEEEccchhhcccc----------hHHHHHHHHHHcCC-eEEEECCCC
Confidence            999999999999 77877776543  68999999999999877664          88999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028595          162 QQNVKAVFDAAIKVVI  177 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~  177 (207)
                      |.||+++|+.+++++.
T Consensus       150 g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHc
Confidence            9999999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-37  Score=224.47  Aligned_cols=167  Identities=26%  Similarity=0.424  Sum_probs=150.5

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.++|| ||||+++|+++.+...+.||.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++
T Consensus         4 ~~~~KivvvG~~~vG-KTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVG-KSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             SEEEEEEEEESTTSS-HHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CEEEEEEEECCCCcC-HHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            357899999999999 9999999999999999999998877 45788899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||+++++++..+ ..|...+.+ ..+++|+++||||+|+.+...+          ..+++..++...+. +|+++||
T Consensus        83 i~v~d~t~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~e~SA  150 (194)
T d2bcgy1          83 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRVV----------EYDVAKEFADANKM-PFLETSA  150 (194)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-CEEECCT
T ss_pred             EEEEeCcchhhhhhH-hhhhhhhhhcccCCceEEEEEeccccccccch----------hHHHHhhhhhccCc-ceEEEec
Confidence            999999999999999 566666654 4478999999999999887664          88999999999998 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCc
Q 028595          160 KTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ++|.||+++|+.+++.+.+...
T Consensus       151 k~g~gi~e~f~~l~~~i~~~~~  172 (194)
T d2bcgy1         151 LDSTNVEDAFLTMARQIKESMS  172 (194)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCC
T ss_pred             CcCccHHHHHHHHHHHHHHHhh
Confidence            9999999999999999876543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-37  Score=219.44  Aligned_cols=161  Identities=23%  Similarity=0.387  Sum_probs=146.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|+++|| ||||+++|.++++.+.+.||.+..+. .....++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         4 ~~Ki~lvG~~~vG-KTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           4 ELKVCLLGDTGVG-KSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             eeEEEEECCCCcC-HHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            5799999999999 99999999999999999999988774 467778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||++++++++.+ ..|...+.... ++.|+++||||+|+.+.+.+          ..++++++++.+++ +|+||||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~SAk~  150 (167)
T d1z0ja1          83 VYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVREV----------MERDAKDYADSIHA-IFVETSAKN  150 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECBTTT
T ss_pred             EeeechhhhhhhH-HHhhhhhhhccCCcceEEEecccchhccccch----------hHHHHHHHHHHcCC-EEEEEecCC
Confidence            9999999999999 77776666555 68999999999999877664          88999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028595          162 QQNVKAVFDAAIKVVI  177 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~  177 (207)
                      |.||+++|.+|++++.
T Consensus       151 ~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         151 AININELFIEISRRIP  166 (167)
T ss_dssp             TBSHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHhCC
Confidence            9999999999999873

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-36  Score=219.49  Aligned_cols=163  Identities=25%  Similarity=0.448  Sum_probs=118.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|.++|| ||||+++|+++.+...+.||++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus         5 ~~~Ki~vvG~~~vG-KTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           5 YLFKLLLIGDSGVG-KTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             EEEEEEEECCCCcC-HHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            46899999999999 9999999999999889999998776 558888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++.|+..+ ..|...+.... ++.|+++|+||.|+...+..          ..+++..++...++ +|++|||+
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa~  151 (173)
T d2fu5c1          84 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQV----------SKERGEKLALDYGI-KFMETSAK  151 (173)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCCS----------CHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECCChhhHHHH-HHHHHHhhhhccCCceEEEEEecccchhhccc----------HHHHHHHHHHhcCC-EEEEEeCC
Confidence            99999999999999 67777775444 68999999999999877664          77889999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      +|+||+++|.+|++.+..
T Consensus       152 ~g~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         152 ANINVENAFFTLARDIKA  169 (173)
T ss_dssp             --CCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998843

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-37  Score=218.90  Aligned_cols=161  Identities=30%  Similarity=0.463  Sum_probs=148.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|+++|| ||||+++|+++.+...+.||.+..+...+..++..+.+.+||++|++.+...+..+++.++++++|
T Consensus         3 e~Ki~viG~~~vG-KTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVG-KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCC-HHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            3799999999999 999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      ||++++.+++.+ ..|+..+.+..  +++|+++||||+|+.+..           +..++++++++.+++ +|++|||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~e~Sak~  148 (166)
T d1ctqa_          82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VESRQAQDLARSYGI-PYIETSAKT  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTCSSCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             ecccccccHHHH-HHHHHHHHHhcCCCCCeEEEEeccccccccc-----------ccHHHHHHHHHHhCC-eEEEEcCCC
Confidence            999999999999 89999887644  579999999999986543           378899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      |+||+++|.++++.+.+
T Consensus       149 g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-37  Score=220.36  Aligned_cols=165  Identities=22%  Similarity=0.375  Sum_probs=148.7

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +..+||+++|.++|| ||||+++|..+++...+.||.+.... ..+..++..+.+.+||++|++++..+++.+++++|++
T Consensus         3 ~~~~KI~lvG~~~vG-KTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           3 DFLFKFLVIGNAGTG-KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             SEEEEEEEEESTTSS-HHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cEEEEEEEECCCCcC-HHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            346899999999999 99999999999999999999887764 4677789999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||+++++++..+ ..|...+.... +++|+++||||+|+.....+          ..+++..+++.+++ +|+++||
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa  149 (174)
T d2bmea1          82 LLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADREV----------TFLEASRFAQENEL-MFLETSA  149 (174)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEecccchhHHHH-hhhhcccccccCCceEEEEEEecccccchhch----------hhhHHHHHHHhCCC-EEEEeeC
Confidence            999999999999999 67777666554 68999999999999877664          88899999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|.|++++|.++++.++++
T Consensus       150 k~~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         150 LTGENVEEAFVQCARKILNK  169 (174)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHH
Confidence            99999999999999998744

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-36  Score=217.02  Aligned_cols=162  Identities=30%  Similarity=0.441  Sum_probs=146.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.++|| ||||+++|+.+++.+.+.||.+..+ ......++..+.+.+||++|++.+..++..+++++|++++
T Consensus         6 ~~Ki~vvG~~~vG-KTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           6 QFKLVLLGESAVG-KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCCcC-HHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            4799999999999 9999999999999999999998877 4577788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhh-cCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||+++++++..+ ..|...+.+ ..+++|+++||||+|+...+.+          +.++++++++.+++ +|+|+||++
T Consensus        85 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v----------~~e~~~~~~~~~~~-~~~e~SAk~  152 (170)
T d1r2qa_          85 VYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRAV----------DFQEAQSYADDNSL-LFMETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EeccchhhHHHHH-HHHhhhhhhccCCCceEEeecccccccccccc----------cHHHHHHHHHhcCC-EEEEeeCCC
Confidence            9999999999999 566666654 4478999999999999877764          89999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      |.||+++|+.|++.+.+
T Consensus       153 g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         153 SMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             CTTHHHHHHHHHHTSCC
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999987754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=219.27  Aligned_cols=163  Identities=25%  Similarity=0.414  Sum_probs=142.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      ..+||+++|+++|| ||||++++.++++.+.+.++.+... ......++..+.+.+||++|++.+..+++.+++++|+++
T Consensus         2 y~~KivvvG~~~vG-KTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           2 YLFKYIIIGDTGVG-KSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             EEEEEEEESSTTSS-HHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             eeEEEEEECCCCcC-HHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            46899999999999 9999999999999888888887666 456777888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      +|||++++++++++ ..|+..+.+.. +++|++|||||+|+...+..          ..++++.+++.+++ +|+++||+
T Consensus        81 lv~d~~~~~sf~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----------~~~~~~~~a~~~~~-~~~e~Sa~  148 (173)
T d2a5ja1          81 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRDV----------KREEGEAFAREHGL-IFMETSAK  148 (173)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEEeecChHHHHhH-HHHHHHHHHhCCCCCeEEEEecCCchhhhhhh----------HHHHHHHHHHHcCC-EEEEecCC
Confidence            99999999999999 67777666654 68999999999999877664          88999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028595          161 TQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~  178 (207)
                      +|.||+++|.++++.+.+
T Consensus       149 tg~~V~e~f~~i~~~i~~  166 (173)
T d2a5ja1         149 TACNVEEAFINTAKEIYR  166 (173)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=213.31  Aligned_cols=163  Identities=27%  Similarity=0.464  Sum_probs=134.9

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCcc-ccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWD-YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   79 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~   79 (207)
                      +..+||+++|+++|| ||||+++|+++++... +.++.+.++ ...+..++..+.+.+|||+|++.+..++..+++++|+
T Consensus         4 d~~fKi~vvG~~~vG-KTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVG-KTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             SEEEEEEEECSTTSS-HHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             ceEEEEEEECCCCcC-HHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            357899999999999 9999999999987654 455556555 5578889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHH-hhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           80 FVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~i-~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      +++|||+++++++..+ ..|...+ ....+..|+++++||.|+.+...+          ..+++..+++.+++ +|+++|
T Consensus        83 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v----------~~~~~~~~~~~~~~-~~~e~S  150 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERVV----------KREDGEKLAKEYGL-PFMETS  150 (170)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCCS----------CHHHHHHHHHHHTC-CEEECC
T ss_pred             eEEEecCCcccchhhh-hhhhhhhhhccCCCceEEEEEeeechhhcccc----------cHHHHHHHHHHcCC-EEEEEe
Confidence            9999999999999999 4555444 444468999999999999887664          88999999999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHh
Q 028595          159 SKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       159 a~~~~~i~~~f~~i~~~~~  177 (207)
                      |++|.||+++|++|++.+.
T Consensus       151 ak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         151 AKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHcC
Confidence            9999999999999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-36  Score=215.38  Aligned_cols=164  Identities=28%  Similarity=0.435  Sum_probs=146.3

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..||+++|+++|| ||||+++|+++++.+.+.||.+..+ ...+..++..+.+.+||++|++.+..+++.++.++|++++
T Consensus         3 ~iKi~vvG~~~vG-KTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           3 SIKLVLLGEAAVG-KSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCCcC-HHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            4799999999999 9999999999999999999999877 5588889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||+++++|++.+ ..|...+.... ...|+++++||+|+.+...       .+.+..++++++++.+++ +|+|+||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~-------~~~v~~~~~~~~~~~~~~-~~~e~Sak~  152 (170)
T d1ek0a_          82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEeCCcccchhhh-hhhhhhhccccccccceeeeecccccccccc-------hhhhhHHHHHHHHHHcCC-EEEEecCCC
Confidence            9999999999999 67766555544 6799999999999865422       234688999999999999 999999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028595          162 QQNVKAVFDAAIKVVI  177 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~  177 (207)
                      |.||+++|+.|++++.
T Consensus       153 g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         153 GENVNDVFLGIGEKIP  168 (170)
T ss_dssp             CTTHHHHHHHHHTTSC
T ss_pred             CcCHHHHHHHHHHHhc
Confidence            9999999999987654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-36  Score=217.16  Aligned_cols=164  Identities=26%  Similarity=0.437  Sum_probs=144.3

Q ss_pred             ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      +.++||+++|.++|| ||||+++|.++.+...+.++.+... ...+..++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~Ki~vvG~~~vG-KTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           2 DYLFKVVLIGDSGVG-KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             SEEEEEEEESSTTSS-HHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CEEEEEEEECCCCcC-HHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            357899999999999 9999999999999888888887665 55778899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      |+|||+++++|+..+ ..|+..+.+.. +++|+++||||+|+.+.+..          ..+.+..+.+.++. +|+++||
T Consensus        81 i~v~d~~~~~S~~~~-~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa  148 (175)
T d2f9la1          81 LLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAV----------PTDEARAFAEKNNL-SFIETSA  148 (175)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEECCCcccchhH-HHHHHHHHHhcCCCCcEEEEEeeecccccccc----------hHHHHHHhhcccCc-eEEEEec
Confidence            999999999999999 67777776655 68999999999999876653          77778888888887 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028595          160 KTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++|.|++++|+++++.+.+
T Consensus       149 ~~g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         149 LDSTNVEEAFKNILTEIYR  167 (175)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999998753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-36  Score=215.67  Aligned_cols=165  Identities=27%  Similarity=0.428  Sum_probs=130.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeE-EE-ECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSAN-VV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~-~~-~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      .+||+++|+++|| ||||+++|+++++.+.+.||.+...... .. .+...+.+.+||++|++.+..++..+++.+|+++
T Consensus         2 ~~Ki~~vG~~~vG-KSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           2 ILKVIILGDSGVG-KTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             eEEEEEECCCCcC-HHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            4799999999999 9999999999999989999887766443 33 2445678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  156 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  156 (207)
                      +|||++++.|++.+ ..|+..+....     +++|++++|||+|+.+.+..         +..++++++++.++..+|++
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~---------v~~~~~~~~~~~~~~~~~~e  150 (175)
T d1ky3a_          81 LVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI---------VSEKSAQELAKSLGDIPLFL  150 (175)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC---------SCHHHHHHHHHHTTSCCEEE
T ss_pred             EEeecccccccchh-hhcchhhhhhhhhcccccCcEEEEecccchhhhhcc---------hhHHHHHHHHHHcCCCeEEE
Confidence            99999999999998 78888775422     47899999999999876543         47889999999998669999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028595          157 CSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      |||++|.||+++|++|++.++++
T Consensus       151 ~SA~~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         151 TSAKNAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHhc
Confidence            99999999999999999988754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-36  Score=220.62  Aligned_cols=163  Identities=33%  Similarity=0.489  Sum_probs=144.6

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECC----------eEEEEEEEeCCCCcccccccc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEG----------TTVNLGLWDTAGQEDYNRLRP   71 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~----------~~~~l~i~D~~G~~~~~~~~~   71 (207)
                      ..+||+++|+++|| ||||+++|+++++...+.++.+..+ ...+.+++          ..+.+.+|||+|++.+..++.
T Consensus         4 ~~~Ki~ivG~~~vG-KTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           4 YLIKLLALGDSGVG-KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             EEEEEEEESCTTSS-HHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             EEEEEEEECCCCcC-HHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            46899999999999 9999999999999999988888776 33444432          357899999999999999999


Q ss_pred             ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      .+++++|++|+|||++++++++.+ ..|+..+....  +.+|+++||||+|+...+.+          ..++++++++.+
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v----------~~~e~~~~~~~~  151 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQREV----------NERQARELADKY  151 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHT
T ss_pred             HHHhcCCEEEEEEeccccccceee-eeccchhhhhccCCCceEEEEeeeccchhhhcc----------hHHHHHHHHHHc
Confidence            999999999999999999999999 78887776543  57899999999999887764          899999999999


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          150 GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ++ +|+++||++|.||+++|+++++.+.+
T Consensus       152 ~~-~~~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         152 GI-PYFETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             TC-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            98 99999999999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-35  Score=211.52  Aligned_cols=161  Identities=27%  Similarity=0.457  Sum_probs=138.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.+++| ||||+++|+++++.+.+.||.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus         2 ~~Ki~vvG~~~vG-KTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           2 IMKILLIGDSGVG-KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             EEEEEEECCCCcC-HHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4799999999999 9999999999999999999999777 4588889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||++++++++.+ ..|...+.... ...|++++++|.|+.+...           ..++++++++.++. +|++|||++
T Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~-----------~~~~~~~~~~~~~~-~~~~~Sa~~  147 (166)
T d1g16a_          81 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRVV-----------TADQGEALAKELGI-PFIESSAKN  147 (166)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCCS-----------CHHHHHHHHHHHTC-CEEECBTTT
T ss_pred             EEECCCccCHHHH-HhhhhhhhccccCcceeeeecchhhhhhhhh-----------hHHHHHHHHHhcCC-eEEEECCCC
Confidence            9999999999998 56655555444 6789999999999876553           78899999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028595          162 QQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~~~  178 (207)
                      |.||+++|++|++.+.+
T Consensus       148 ~~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         148 DDNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-35  Score=212.02  Aligned_cols=162  Identities=19%  Similarity=0.304  Sum_probs=136.7

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCC-ccccCcee-eeeeeEEEECCeEEEEEEEeCCC---CccccccccceecCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVF-DNFSANVVAEGTTVNLGLWDTAG---QEDYNRLRPLSYRGA   77 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G---~~~~~~~~~~~~~~~   77 (207)
                      ..+||+++|+++|| ||||+++|+++.+. ..+.+|.+ +.+...+.+++..+.+.+||+++   ++++  ++..+++++
T Consensus         2 ~~~Kv~lvG~~~vG-KTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~   78 (172)
T d2g3ya1           2 TYYRVVLIGEQGVG-KSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVG   78 (172)
T ss_dssp             CEEEEEEECCTTSS-HHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCC
T ss_pred             CEEEEEEECCCCcC-HHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--ccccccccc
Confidence            36899999999999 99999999987654 33444554 45577888999999999999764   5544  567889999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595           78 DVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus        78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                      |++|+|||+++++|++++ ..|...+....  +++|+++||||+|+.+.+.+          +.++++++++.+++ +|+
T Consensus        79 ~~~ilvfd~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v----------~~~~~~~~a~~~~~-~~~  146 (172)
T d2g3ya1          79 DAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCREV----------SVSEGRACAVVFDC-KFI  146 (172)
T ss_dssp             SEEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEE
T ss_pred             ceeeeeecccccchhhhh-hhhhhhhhhccccCCceEEEEeccccccccccc----------cHHHHHHHHHHcCC-eEE
Confidence            999999999999999999 78887776543  68999999999999887764          88999999999998 999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++||++|.||+++|+.+++.+..+
T Consensus       147 e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         147 ETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCcCHHHHHHHHHHHHHHc
Confidence            999999999999999999988544

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=209.92  Aligned_cols=164  Identities=26%  Similarity=0.486  Sum_probs=148.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.++|| ||||+++|.++++...+.++.+..+ ...+.+++..+.+.+|||+|++.++.+++.+++++|++++
T Consensus         7 ~iKi~vvG~~~vG-KTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           7 TLKILIIGESGVG-KSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             eeEEEEECCCCcC-HHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4799999999999 9999999999999999888887776 4577889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      |||++++++++.+ ..|+..+.+..  ...|+++++||.|..+..           +..++++++++.+++ +|+++||+
T Consensus        86 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-----------v~~~~~~~~~~~~~~-~~~e~Sa~  152 (177)
T d1x3sa1          86 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK  152 (177)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECCCccccccc-hhhhhhhcccccccceeeEEEeecccccccc-----------ccHHHHHHHHHHCCC-EEEEEeCC
Confidence            9999999999999 78888887655  468999999999975433           488999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCc
Q 028595          161 TQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       161 ~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      +|+||+++|+++++.++++++
T Consensus       153 tg~gv~e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         153 TCDGVQCAFEELVEKIIQTPG  173 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCCHHHHHHHHHHHHccCcc
Confidence            999999999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-34  Score=207.94  Aligned_cols=162  Identities=30%  Similarity=0.468  Sum_probs=141.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      .+||+++|.++|| ||||+++|+.+++...+.+|++..+ ......++..+.+.+||++|+......+..++..+|++++
T Consensus         6 ~~KI~vvG~~~vG-KSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           6 LFKVILLGDGGVG-KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             eEEEEEECCCCCC-HHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            5799999999999 9999999999999999999998777 4577889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  157 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  157 (207)
                      +||.+++.|++.+ ..|++.+....     +++|+++||||+|+.+. .          +..+++++++++++..+|+||
T Consensus        85 ~~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~-~----------v~~~~~~~~~~~~~~~~~~e~  152 (174)
T d1wmsa_          85 TFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISER-Q----------VSTEEAQAWCRDNGDYPYFET  152 (174)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-S----------SCHHHHHHHHHHTTCCCEEEC
T ss_pred             EEeeecccccchh-hhHHHHHHHHhccccCCCceEEEeccccchhhc-c----------CcHHHHHHHHHHcCCCeEEEE
Confidence            9999999999998 78887775432     47999999999998653 3          488999999999875599999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ||++|.||+++|+++++.++.
T Consensus       153 Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         153 SAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999999998864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-34  Score=209.45  Aligned_cols=166  Identities=26%  Similarity=0.414  Sum_probs=146.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   81 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   81 (207)
                      +.+||+++|.++|| ||||+++|+++++...+.||.+.++ .......+..+.+.+||++|++.+...+..++..+|+++
T Consensus         1 ~~~Kv~vvG~~~vG-KSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (184)
T d1vg8a_           1 VLLKVIILGDSGVG-KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   79 (184)
T ss_dssp             CEEEEEEECCTTSS-HHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CEEEEEEECCCCcC-HHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEE
Confidence            36899999999999 9999999999999999999998776 557778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  156 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  156 (207)
                      +|||.+++.++..+ ..|++.+....     .++|+++||||+|+.+..           +..++..+++...+..+|++
T Consensus        80 ~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~e  147 (184)
T d1vg8a_          80 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFE  147 (184)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEEE
T ss_pred             Eeecccchhhhhcc-hhhHHHHHHHhccccccCCCEEEEEEeecccccc-----------hhHHHHHHHHHHhcCCeEEE
Confidence            99999999999998 78887775432     368999999999986644           37788888887765559999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCCCc
Q 028595          157 CSSKTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      |||++|.||+++|+++++.+.+++.
T Consensus       148 ~Sak~~~gI~e~f~~l~~~i~~~~~  172 (184)
T d1vg8a_         148 TSAKEAINVEQAFQTIARNALKQET  172 (184)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHhccc
Confidence            9999999999999999998877544

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-34  Score=206.01  Aligned_cols=157  Identities=24%  Similarity=0.369  Sum_probs=139.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccc-cccceecCCcEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFV   81 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~i   81 (207)
                      .+||+++|.++|| ||||+++|+++++...+.++.+..+ .....+.+..+.+.+||++|.+.+.. .++.+++++|++|
T Consensus         2 ~~Kv~liG~~~vG-KTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           2 IFKIIVIGDSNVG-KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             EEEEEEECCCCcC-HHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            5799999999999 9999999999999999999998777 55778889999999999999887754 5678899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      +|||+++++|++++ ..|+..+.+..  +++|++|||||+|+.+.+.+          +.++++++++.+++ +|+|+||
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~SA  148 (165)
T d1z06a1          81 FVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQV----------PTDLAQKFADTHSM-PLFETSA  148 (165)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-CEEECCS
T ss_pred             EEEEeehhhhhhhh-hhhhHHHHhhccCCCCeEEEEeccccchhccch----------hHHHHHHHHHHCCC-EEEEEec
Confidence            99999999999998 78888876643  58999999999999887764          89999999999998 9999999


Q ss_pred             CC---CCCHHHHHHHHH
Q 028595          160 KT---QQNVKAVFDAAI  173 (207)
Q Consensus       160 ~~---~~~i~~~f~~i~  173 (207)
                      ++   ++||+++|++|+
T Consensus       149 kt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         149 KNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             SSGGGGSCHHHHHHHHC
T ss_pred             ccCCcCcCHHHHHHHhC
Confidence            97   469999999874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-34  Score=206.64  Aligned_cols=162  Identities=20%  Similarity=0.207  Sum_probs=138.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|+++|| ||||+++|+++.+. .+.+|.+..+...+.++|..+.+.+|||+|++.+     .|++++|++|+|
T Consensus         5 ~~ki~vlG~~~vG-KTsLi~~~~~~~f~-~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           5 ELRLGVLGDARSG-KSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             EEEEEEECCTTTT-HHHHHHHHHHSCCC-CCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCC-HHHHHHHHHhCCCC-CcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            4799999999999 99999999999875 4567888888888899999999999999998764     478899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ||+++++||+.+ ..|...+....    +.+|+++||||.|+.....        +.++.++++.++...+..+|+||||
T Consensus        78 fd~~~~~Sf~~~-~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~--------~~v~~~~~~~~~~~~~~~~~~e~SA  148 (175)
T d2bmja1          78 FSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASSP--------RVVGDARARALCADMKRCSYYETCA  148 (175)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSC--------CCSCHHHHHHHHHTSTTEEEEEEBT
T ss_pred             eecccchhhhhh-HHHHHHHHHHhhcccCCccEEEEeeecCcchhhh--------cchhHHHHHHHHHHhCCCeEEEeCC
Confidence            999999999999 78888876543    4689999999999854332        2358889999987655449999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCc
Q 028595          160 KTQQNVKAVFDAAIKVVIKPPQ  181 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~~~  181 (207)
                      ++|.|++++|..+++.+...+.
T Consensus       149 k~~~~v~~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         149 TYGLNVDRVFQEVAQKVVTLRK  170 (175)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHhhh
Confidence            9999999999999999876543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=9.8e-33  Score=197.36  Aligned_cols=160  Identities=19%  Similarity=0.207  Sum_probs=126.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|.+++| ||||+++|.++++...+.||.+..+. .+..+  .+.+.+||+||++.+...+..++.+++++++|
T Consensus         2 e~ki~i~G~~~~G-KTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSG-KTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCC-HHHHHHHHHcCCCCCcccccceeeee-eeeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            4799999999999 99999999999999999999886553 33444  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      ||+++++++..+...|...+.... +++|++||+||.|+.+....       ..+....+..+++..++ +++++||++|
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~-------~~i~~~~~~~~~~~~~~-~~~e~Sa~~g  149 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE-------KELIEKMNLSAIQDREI-CCYSISCKEK  149 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH-------HHHHHHTTGGGCCSSCE-EEEECCTTTC
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhH-------HHHHHHHHHHHHHhCCC-EEEEEeCcCC
Confidence            999999999998444444444433 68999999999998754321       00111112222333344 8899999999


Q ss_pred             CCHHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIKV  175 (207)
Q Consensus       163 ~~i~~~f~~i~~~  175 (207)
                      +|++++|++|++.
T Consensus       150 ~gv~e~~~~l~~~  162 (164)
T d1zd9a1         150 DNIDITLQWLIQH  162 (164)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHc
Confidence            9999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.7e-30  Score=185.62  Aligned_cols=157  Identities=15%  Similarity=0.146  Sum_probs=124.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.+++| ||||+++|.+..+ ..+.||.+... ..+..+  .+.+.+||++|++.++..+..+++.++++++|
T Consensus         2 ~~ki~ivG~~~~G-KTsLi~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAG-KTTILKKFNGEDV-DTISPTLGFNI-KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSS-HHHHHHHHTTCCC-SSCCCCSSEEE-EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCC-HHHHHHHHcCCCC-CcccceEeeee-eecccc--ccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            4799999999999 9999999998775 45677776433 233444  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH--H---HhCCcEEEEe
Q 028595           84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR--K---QIGASYYIEC  157 (207)
Q Consensus        84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~--~---~~~~~~~~e~  157 (207)
                      ||+++..++.++...|...+.... ++.|+++|+||+|+.+...            .++.....  .   ..++ ++++|
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  143 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS------------CNAIQEALELDSIRSHHW-RIQGC  143 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEEEC
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC------------HHHHHHHHHhhhhhcCCC-EEEEE
Confidence            999999999998666666654433 6899999999999976543            22222221  1   1133 78999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhC
Q 028595          158 SSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       158 Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ||++|+|++++|++|++.+..
T Consensus       144 Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         144 SAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHHHc
Confidence            999999999999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=1.5e-30  Score=188.93  Aligned_cols=157  Identities=13%  Similarity=0.121  Sum_probs=118.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.++|| ||||+++|.++.+. .+.||.+... .....+  .+.+.+||++|++.++.++..++.++|++++
T Consensus        16 k~~KI~lvG~~~vG-KTsLi~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   90 (182)
T d1moza_          16 KELRILILGLDGAG-KTTILYRLQIGEVV-TTKPTIGFNV-ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF   90 (182)
T ss_dssp             SCEEEEEEEETTSS-HHHHHHHTCCSEEE-EECSSTTCCE-EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             ceEEEEEECCCCCC-HHHHHHHHhcCCCC-ccccccceEE-EEEeeC--CEEEEEEecccccccchhHHhhhccceeEEE
Confidence            45899999999999 99999999888754 4456665433 223333  4788999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHH-HHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhCCcEEE
Q 028595           83 AFSLVSRASYENVLKKWI-PELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYI  155 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~-~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~  155 (207)
                      |||++++.++.+. ..|+ ..+.... .+.|++||+||+|+.+..            ...+..+     .+...++ +++
T Consensus        91 v~d~~d~~s~~~~-~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~  156 (182)
T d1moza_          91 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGAL------------SASEVSKELNLVELKDRSW-SIV  156 (182)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTCC------------CHHHHHHHTTTTTCCSSCE-EEE
T ss_pred             EeeecccccchhH-HHHHHHHHHhhccCCcceEEEEEeecccccc------------CHHHHHHHHHHHHHhhCCC-EEE
Confidence            9999999999998 4554 4444433 579999999999996543            2222222     2223344 789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +|||++|+|++++|++|++.+.+
T Consensus       157 e~SA~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         157 ASSAIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             EEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=2.5e-30  Score=186.28  Aligned_cols=161  Identities=14%  Similarity=0.135  Sum_probs=120.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.++|| ||||+++|+++.+.. ..+|.+..+ ....  ...+.+.+||+||++.++..+..++++++++++
T Consensus        11 k~~kIvlvG~~~vG-KTSli~rl~~~~~~~-~~~t~~~~~-~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          11 KEMRILMLGLDAAG-KTTILYKLKLGQSVT-TIPTVGFNV-ETVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CCEEEEEEEETTSS-HHHHHHHTTCCCCEE-EEEETTEEE-EEEE--ETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CeEEEEEECCCCCC-HHHHHHHHhcCCCCC-ccceeeeeE-EEee--ccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            35799999999999 999999999887543 334544332 2222  334788999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  161 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  161 (207)
                      |||+++.+++..+...|...+.... .+.|+++++||+|+.+....       ..+..+.+...+...++ ++++|||++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-------~~i~~~~~~~~~~~~~~-~~~e~SA~t  157 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-------HEIQEKLGLTRIRDRNW-YVQPSCATS  157 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHTTGGGCCSSCE-EEEECBTTT
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH-------HHHHHHHHHHHHHhCCC-EEEEeeCCC
Confidence            9999999999999544444454433 68999999999999765321       00111111222223344 789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028595          162 QQNVKAVFDAAIKVV  176 (207)
Q Consensus       162 ~~~i~~~f~~i~~~~  176 (207)
                      |+||+++|++|.+.+
T Consensus       158 g~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         158 GDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TBTHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHhc
Confidence            999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=1.2e-29  Score=183.02  Aligned_cols=154  Identities=18%  Similarity=0.188  Sum_probs=118.8

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.+++| ||||+++|.++.+... .++.+.. ...+..+  .+.+.+||++|++.++..+..++..+|++++
T Consensus        15 ~~~kI~vvG~~~vG-KSsLi~~l~~~~~~~~-~~~~~~~-~~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   89 (176)
T d1fzqa_          15 QEVRILLLGLDNAG-KTTLLKQLASEDISHI-TPTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (176)
T ss_dssp             SCEEEEEEESTTSS-HHHHHHHHCCSCCEEE-EEETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CEEEEEEECCCCCC-HHHHHHHHhcCCCCcc-eeeeeee-EEEeccC--CeeEeEeeccccccchhHHHHHhhccceeEE
Confidence            35799999999999 9999999999887533 3444432 2233334  4789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhh-cC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhCCcEEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQH-YS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYI  155 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~-~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~  155 (207)
                      |||++++.++.++ ..|...+.. .. .++|+++++||+|+.+...            .....+     +++..++ +++
T Consensus        90 v~d~~d~~s~~~~-~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~  155 (176)
T d1fzqa_          90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAAP------------ASEIAEGLNLHTIRDRVW-QIQ  155 (176)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred             eeccccccchhhh-hhhhhhhhhhhccCCCeEEEEEEecccccccc------------HHHHHHHHHHHHHHhcCC-EEE
Confidence            9999999999999 455444433 33 5799999999999976542            222221     1222233 799


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028595          156 ECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +|||++|+|++++|++|++.
T Consensus       156 ~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         156 SCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             ECCTTTCTTHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHhc
Confidence            99999999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=7.4e-29  Score=175.61  Aligned_cols=158  Identities=9%  Similarity=0.107  Sum_probs=122.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      .||+++|.++|| ||||+++|+++++...+..+..    .....+...+.+.+||++|.+.+...+..++.++++++++|
T Consensus         1 ikivlvG~~~vG-KSsLi~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAG-KTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSS-HHHHHHHHHHHCSSCCCCCSSC----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCC-HHHHHHHHhcCCCCccccceee----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            489999999999 9999999998887655443332    23344556788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHh-hcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595           85 SLVSRASYENVLKKWIPELQ-HYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  162 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~-~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  162 (207)
                      |++++.++..+ ..|...+. ... ..+|+++++||.|+......       ..+..+....+++..++ +++++||++|
T Consensus        76 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~-------~~i~~~~~~~~~~~~~~-~~~~~SAktg  146 (160)
T d1r8sa_          76 DSNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAMNA-------AEITDKLGLHSLRHRNW-YIQATCATSG  146 (160)
T ss_dssp             ETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHTTGGGCSSCCE-EEEECBTTTT
T ss_pred             EecChHHHHHH-HHHHHHHHHhhcccCceEEEEeecccccccccH-------HHHHHHHHHHHHhhCCC-EEEEeECCCC
Confidence            99999999998 44544443 332 57999999999998764321       11122233344455565 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028595          163 QNVKAVFDAAIKVV  176 (207)
Q Consensus       163 ~~i~~~f~~i~~~~  176 (207)
                      +||+++|++|++++
T Consensus       147 ~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         147 DGLYEGLDWLSNQL  160 (160)
T ss_dssp             BTHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhcC
Confidence            99999999998764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=9.6e-26  Score=160.55  Aligned_cols=166  Identities=12%  Similarity=0.117  Sum_probs=126.7

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   80 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   80 (207)
                      |....||+++|.++|| ||||+++|+++.+.. ..+|.+... .....+  .+.+.+||.+|.+.+......++..++++
T Consensus         2 m~ke~kI~ivG~~~vG-KSSLi~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (169)
T d1upta_           2 MTREMRILILGLDGAG-KTTILYRLQVGEVVT-TIPTIGFNV-ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAV   76 (169)
T ss_dssp             CSSCEEEEEECSTTSS-HHHHHHHHHHSSCCC-CCCCSSEEE-EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred             CCcceEEEEECCCCCC-HHHHHHHHhCCCCcc-eecccceee-eeeccC--ceEEEEeeccccccccccchhhhhhhhhh
Confidence            7888999999999999 999999999998754 335544322 223333  47888999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595           81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  159 (207)
Q Consensus        81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  159 (207)
                      ++++|+.+..++......+...+.... +..|+++++||.|+......       ..+..+.+..++...++ +|+++||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~-------~~i~~~~~~~~~~~~~~-~~~~~SA  148 (169)
T d1upta_          77 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-------SEMANSLGLPALKDRKW-QIFKTSA  148 (169)
T ss_dssp             EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHHTGGGCTTSCE-EEEECCT
T ss_pred             hhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH-------HHHHHHHHHHHHhcCCC-EEEEEeC
Confidence            999999999998888444444444333 68999999999999765431       00122223334444455 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028595          160 KTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       160 ~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++|.||+++|++|++.+.++
T Consensus       149 ~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         149 TKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             TTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999988554

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.1e-25  Score=162.44  Aligned_cols=157  Identities=13%  Similarity=0.054  Sum_probs=116.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc--------ccee
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLSY   74 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~~   74 (207)
                      .+|+++|.+++| ||||+|+|++.+..  .....|............+  ..+.+|||||........        ..++
T Consensus         6 ~~I~lvG~~~~G-KSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           6 GFVAIVGKPNVG-KSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEECSTTSS-HHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCC-HHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            479999999999 99999999988643  2233333222233444454  567899999976543332        2446


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      .++|++++|+|++++.....  ..|.+.+.....+.|+++|+||+|+.+.             ..+..+.+.+.++...+
T Consensus        83 ~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~  147 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKY-------------PEEAMKAYHELLPEAEP  147 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSS-------------HHHHHHHHHHTSTTSEE
T ss_pred             ccccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccC-------------HHHHHHHHHhhcccCce
Confidence            78999999999998765544  4667777776678999999999998653             23445666666776688


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          155 IECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++||++|.|+++++++|++.+.+.
T Consensus       148 ~~iSA~~~~gi~~L~~~i~~~lpe~  172 (178)
T d1wf3a1         148 RMLSALDERQVAELKADLLALMPEG  172 (178)
T ss_dssp             EECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred             EEEecCCCCCHHHHHHHHHHhCCCC
Confidence            9999999999999999999887543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=6.1e-25  Score=157.95  Aligned_cols=156  Identities=13%  Similarity=0.142  Sum_probs=114.1

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ..+||+++|.++|| ||||++++.++++... .++.+. ........+  +.+.+||+++++..+..+..++..++++++
T Consensus        14 k~~kI~vvG~~~~G-KSsLi~rl~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          14 QEHKVIIVGLDNAG-KTTILYQFSMNEVVHT-SPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             SCEEEEEEESTTSS-HHHHHHHHHTTSCEEE-ECCSCS-SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CeEEEEEECCCCCC-HHHHHHHHhcCCCCcc-ccccce-eEEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            35899999999999 9999999999887543 333332 223333333  778999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH-----HHhCCcEEEE
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIE  156 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e  156 (207)
                      ++|.++.+++......+........ .+.|+++|+||+|+.....            ..+.....     ...++ ++++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------------~~~i~~~~~~~~~~~~~~-~~~~  155 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT------------VAEISQFLKLTSIKDHQW-HIQA  155 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHHTGGGCCSSCE-EEEE
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc------------HHHHHHHHHHHhhHhcCC-EEEE
Confidence            9999999999887333333332222 6899999999999876542            22222222     22233 7999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 028595          157 CSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       157 ~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +||++|+|++++|++|++++
T Consensus       156 ~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         156 CCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             CBTTTTBTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999876

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.3e-26  Score=166.43  Aligned_cols=169  Identities=15%  Similarity=0.074  Sum_probs=124.0

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|..+|| ||||+++|..+.+  .+.||+|..+.   .+....+.+++||++|++.++..+..++.++++++++
T Consensus         2 e~Kiv~lG~~~vG-KTsll~r~~~~~~--~~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESG-KSTFIKQMRIIHG--SGVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHHTS--SCCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCC-HHHHHHHHhCCCC--CCCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            5799999999999 9999999998876  47799986542   2334457899999999999999999999999999999


Q ss_pred             EeCCChhh----------HHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccC------CCCCcccCHHHHHHHH
Q 028595           84 FSLVSRAS----------YENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLAD------HPGLVPVTTAQGEELR  146 (207)
Q Consensus        84 ~d~~~~~s----------~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~------~~~~~~v~~~~~~~~~  146 (207)
                      ||.++.++          +.+....|...+.... ++.|+++++||+|+.+.......      ...........+..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            99987642          3333378888886655 68999999999998643322100      0001111333333332


Q ss_pred             HH----h-----CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          147 KQ----I-----GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       147 ~~----~-----~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ..    .     +...+++|||++|.||+++|+.+.+.+++
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            21    1     11257899999999999999999888764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.5e-25  Score=163.31  Aligned_cols=166  Identities=17%  Similarity=0.093  Sum_probs=115.6

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      ..||+++|+.+|| ||||+++|..+.+     ||.+.   ....++...+.+++||++|++.+++++..|+++++++++|
T Consensus         2 e~KivllG~~~vG-KTsl~~r~~~~~~-----~t~~~---~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESG-KSTIVKQMKIIHE-----AGTGI---VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHHHS-----CCCSE---EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCC-HHHHHHHHhhCCC-----CCccE---EEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            5799999999999 9999999976654     34332   1222333457899999999999999999999999999999


Q ss_pred             EeCCChhhHH----------HHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccC-----CCCCcccCHHHHHHHH-
Q 028595           84 FSLVSRASYE----------NVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLAD-----HPGLVPVTTAQGEELR-  146 (207)
Q Consensus        84 ~d~~~~~s~~----------~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~-----~~~~~~v~~~~~~~~~-  146 (207)
                      ||+++.+++.          +....|...+.... +..|+++++||+|+...+.....     ..........++..+. 
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            9999887652          22256666665544 67999999999997543221000     0000111222222211 


Q ss_pred             HHh---------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          147 KQI---------GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       147 ~~~---------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ..+         +..++++|||+++.||+++|+.+.+.+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence            111         12257799999999999999999887764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.5e-23  Score=148.27  Aligned_cols=152  Identities=14%  Similarity=0.113  Sum_probs=115.1

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   84 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   84 (207)
                      .||+++|.+++| ||||+|+|.++++. .+.||.+....   ......+...+||++|...+...+..++..++++++++
T Consensus         1 ~KI~liG~~nvG-KSSLln~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (166)
T d2qtvb1           1 GKLLFLGLDNAG-KTTLLHMLKNDRLA-TLQPTWHPTSE---ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV   75 (166)
T ss_dssp             CEEEEECSTTSS-HHHHHHHHHHSCCC-CCCCCCSCEEE---EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCCCCC-eeeceeeEeEE---EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeec
Confidence            389999999999 99999999998864 45677654332   22333466889999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-----------HhCC
Q 028595           85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----------QIGA  151 (207)
Q Consensus        85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~  151 (207)
                      |.++..++.... .|........  .+.|+++++||.|+....            ...+..+...           ....
T Consensus        76 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~  142 (166)
T d2qtvb1          76 DAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNAV------------SEAELRSALGLLNTTGSQRIEGQRP  142 (166)
T ss_dssp             ETTCGGGHHHHH-HHHHHHHTCTTTTTCCEEEEEECTTSSSCC------------CHHHHHHHHTCSSCCC---CCSSCC
T ss_pred             cccchhhhhhhh-HHHHhhhhhhccCCceEEEEeccccccccC------------CHHHHHHHhhhhhhhHHHhhcccCC
Confidence            999999999884 4444443333  589999999999986543            2222211111           1111


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHH
Q 028595          152 SYYIECSSKTQQNVKAVFDAAIK  174 (207)
Q Consensus       152 ~~~~e~Sa~~~~~i~~~f~~i~~  174 (207)
                      .++++|||++|+|++++|++|.+
T Consensus       143 ~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         143 VEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CEEEEeeCCCCCCHHHHHHHHhC
Confidence            27899999999999999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=6e-24  Score=155.58  Aligned_cols=167  Identities=15%  Similarity=0.120  Sum_probs=111.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   83 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v   83 (207)
                      .+||+++|.++|| ||||+++|   .+...+.||+|... ..+..+  .+.+.+||++|++.++..+..+++++++++++
T Consensus         2 ~iKivllG~~~vG-KTsll~r~---~f~~~~~pTiG~~~-~~~~~~--~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESG-KSTFLKQM---RIIHGQDPTKGIHE-YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSS-HHHHHHHH---HHHHSCCCCSSEEE-EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCC-HHHHHHHH---hcCCCCCCeeeeEE-EEEeee--eeeeeeecccceeeecccccccccccceeEEE
Confidence            5799999999999 99999999   46778899998543 234444  47889999999999999999999999999999


Q ss_pred             EeCCChhh----------HHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCccc-------ccCCCCCcccCHHHHHHH
Q 028595           84 FSLVSRAS----------YENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHY-------LADHPGLVPVTTAQGEEL  145 (207)
Q Consensus        84 ~d~~~~~s----------~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~-------~~~~~~~~~v~~~~~~~~  145 (207)
                      ||.++..+          +.+....|...+.... .++|++++|||+|+.+....       ..+..+.. -..+.+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~  153 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDP-HCLRDVQKF  153 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCT-TCHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCc-chHHHHHHH
Confidence            99997543          3444234444444433 68999999999998643211       01111111 133344443


Q ss_pred             HHHh----------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          146 RKQI----------GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       146 ~~~~----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ....          ....+++|||+++.||+++|+.+.+.+++
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            3321          11256789999999999999998877754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=6.7e-24  Score=153.15  Aligned_cols=161  Identities=14%  Similarity=0.083  Sum_probs=108.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc----cccc---cceecCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLR---PLSYRGA   77 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~---~~~~~~~   77 (207)
                      ..|+++|.++|| ||||+|+|++........+..+...............+.+|||||....    ..+.   ...+..+
T Consensus         2 ~~VaivG~~nvG-KSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           2 ADVGLVGYPNAG-KSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             CSEEEECCGGGC-HHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhh
Confidence            469999999999 9999999998765333223322223333334444456889999994321    1222   2345679


Q ss_pred             cEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595           78 DVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  155 (207)
Q Consensus        78 d~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  155 (207)
                      +++++++|.....  +.... ..|+........++|+++|+||+|+.+.+            ..++..+.....+. +++
T Consensus        81 ~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D~~~~~------------~~~~~~~~~~~~~~-~~~  146 (180)
T d1udxa2          81 RVLLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEE------------AVKALADALAREGL-AVL  146 (180)
T ss_dssp             SEEEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHH------------HHHHHHHHHHTTTS-CEE
T ss_pred             hhhhhhcccccccccchhhh-hhhhhccccccchhhhhhhhhhhhhhhHH------------HHHHHHHHHHhcCC-eEE
Confidence            9999999986542  33322 33333332222368999999999997654            23445555555666 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          156 ECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       156 e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      .+||++|.|++++++.|.+.+...+
T Consensus       147 ~iSA~tg~gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         147 PVSALTGAGLPALKEALHALVRSTP  171 (180)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhhcC
Confidence            9999999999999999998887554

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.3e-24  Score=152.72  Aligned_cols=150  Identities=15%  Similarity=0.196  Sum_probs=111.0

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCc-cccC-ceeeeeeeEEEECCeEEEEEEEeCCCCcccccc--------cccee
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIW-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSY   74 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~   74 (207)
                      +||+++|.++|| ||||+|+|++.+... .+.| +........+...+  ..+.+||++|.......        ...++
T Consensus         2 ~kI~lvG~~nvG-KSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           2 MKVVIAGRPNAG-KSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             EEEEEEESTTSS-HHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHH
Confidence            699999999999 999999999876432 2222 22222333555555  56789999996544321        23557


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  154 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (207)
                      ..+|++++++|..+..+.... ..|...+.....+.|+++|+||+|+.+....+                  ++.+..++
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~------------------~~~~~~~~  139 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLGM------------------SEVNGHAL  139 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE------------------EEETTEEE
T ss_pred             Hhccccceeeccccccchhhh-hhhhhhhhhcccccceeeccchhhhhhhHHHH------------------HHhCCCcE
Confidence            889999999999998888777 56666666666789999999999987654321                  11233489


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 028595          155 IECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       155 ~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      +++||++|.|+++++++|++.+
T Consensus       140 ~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         140 IRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            9999999999999999998763

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.89  E-value=8.5e-23  Score=147.22  Aligned_cols=157  Identities=14%  Similarity=0.141  Sum_probs=112.5

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.++|| ||||+++|+++.+... .|+.+... ..+..++  ..+..||+.++..+...+..++...+++++
T Consensus        12 k~~kI~lvG~~~vG-KTsLl~~l~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          12 KTGKLVFLGLDNAG-KTTLLHMLKDDRLGQH-VPTLHPTS-EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             CCEEEEEEEETTSS-HHHHHHHHSCC-------CCCCCSC-EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCEEEEECCCCCC-HHHHHHHHhCCCCcce-ecccccce-eEEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            46799999999999 9999999999886543 35544332 2345555  457899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-----------
Q 028595           83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-----------  150 (207)
Q Consensus        83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------  150 (207)
                      ++|+++...+......+........ .+.|+++++||.|+....            ...+.........           
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~  154 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI------------SEERLREMFGLYGQTTGKGSVSLK  154 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC------------CHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC------------CHHHHHHHHhhcccchhhhhhhHH
Confidence            9999999999988544544444333 689999999999986543            2333333332111           


Q ss_pred             -----CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595          151 -----ASYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       151 -----~~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                           ..++++|||++|+|++++|++|++++
T Consensus       155 ~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         155 ELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence                 12689999999999999999998754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=7.6e-23  Score=146.34  Aligned_cols=156  Identities=17%  Similarity=0.092  Sum_probs=102.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc---------ccccce
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN---------RLRPLS   73 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~~   73 (207)
                      ..|+++|.+++| ||||+|+|++....  ..+..+........+...  ...+.+||++|.....         .....+
T Consensus         1 a~V~liG~~n~G-KSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   77 (171)
T d1mkya1           1 ATVLIVGRPNVG-KSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--GKTFKLVDTCGVFDNPQDIISQKMKEVTLNM   77 (171)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHHC--------------CCSEEEEEET--TEEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCCCcceecccCceeecccccccccc--ccccccccccceeeeeccccccccccccccc
Confidence            369999999999 99999999987643  222222222222233333  4678899999943321         122344


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      +..+|+++++.+.++......  ..+...+...  ++|+++|+||+|+.+..            ..+...++ ...+..+
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~--~~~~~~l~~~--~~pviiv~NK~Dl~~~~------------~~~~~~~~-~~~~~~~  140 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLREF------------EREVKPEL-YSLGFGE  140 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHHH------------HHHTHHHH-GGGSSCS
T ss_pred             cccCcEEEEeecccccccccc--cccccccccc--cccccccchhhhhhhhh------------hhHHHHHH-HhcCCCC
Confidence            678999999999887665554  3556666554  78999999999986432            22222233 2345557


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                      ++++||++|.|+++++++|++.+.+..
T Consensus       141 ~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         141 PIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             CEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             eEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            899999999999999999999886554

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.2e-21  Score=145.77  Aligned_cols=168  Identities=14%  Similarity=0.109  Sum_probs=118.2

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   82 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   82 (207)
                      ...||+++|.++|| ||||++++..+.    ..||+|.. ...+.+++  +.+.+||++|++.++..|..++.+++++++
T Consensus         5 ~~~KilllG~~~vG-KTsll~~~~~~~----~~pTiG~~-~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESG-KSTIVKQMRILH----VVLTSGIF-ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSS-HHHHHHHHHHHH----CCCCCSCE-EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCC-HHHHHHHHhcCC----cCCCCCeE-EEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            46899999999999 999999997553    45888843 33455555  778999999999999999999999999999


Q ss_pred             EEeCCChh----------hHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccc---------cCCC---C------
Q 028595           83 AFSLVSRA----------SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYL---------ADHP---G------  133 (207)
Q Consensus        83 v~d~~~~~----------s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~---------~~~~---~------  133 (207)
                      ++|+++.+          ...+....|...+.... .++|++|+|||+|+.+.+...         .+..   .      
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99998643          34444356666666544 689999999999986543210         0000   0      


Q ss_pred             --CcccCHHHHHHH-----HHHhC-------CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          134 --LVPVTTAQGEEL-----RKQIG-------ASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       134 --~~~v~~~~~~~~-----~~~~~-------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                        -.......+..+     .+...       ...+++|||.++.||..+|..+.+.+++
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence              000112233332     22221       1245689999999999999988776663

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=5.7e-22  Score=140.06  Aligned_cols=147  Identities=16%  Similarity=0.171  Sum_probs=100.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCc--cccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc-cc--------ccce
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-RL--------RPLS   73 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~--------~~~~   73 (207)
                      .||+++|.+++| ||||+|+|++.+...  ....+........+..++  ..+.+|||||..... ..        ....
T Consensus         1 ikI~liG~~n~G-KSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~   77 (160)
T d1xzpa2           1 LRMVIVGKPNVG-KSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE   77 (160)
T ss_dssp             EEEEEECCHHHH-TCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHH
Confidence            489999999999 999999999776432  222222222344555555  567899999943211 11        1123


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-Cc
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-AS  152 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~  152 (207)
                      +.++|++++|+|.+++...+..  .+...+    ...|+++++||+|+.+..            ..++..   +.++ ..
T Consensus        78 ~~~ad~ii~v~d~~~~~~~~~~--~~~~~~----~~~~~i~~~~k~d~~~~~------------~~~~~~---~~~~~~~  136 (160)
T d1xzpa2          78 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEKI------------NEEEIK---NKLGTDR  136 (160)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCCC------------CHHHHH---HHHTCST
T ss_pred             HHhCCEEEEEEeCCCCcchhhh--hhhhhc----ccccceeeeeeccccchh------------hhHHHH---HHhCCCC
Confidence            5679999999999998877765  233333    368899999999987653            222222   2222 23


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHH
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      +++++||++|+|+++++++|.+.
T Consensus       137 ~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         137 HMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             TEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHhc
Confidence            78999999999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=1.7e-20  Score=135.57  Aligned_cols=158  Identities=20%  Similarity=0.119  Sum_probs=105.4

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc------------
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR------------   68 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------------   68 (207)
                      -.+||+++|.+++| ||||+|++++.+..  ..+..+........+..++.  .+.++|++|......            
T Consensus         7 ~~~kV~iiG~~~~G-KSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           7 DAIKVAIVGRPNVG-KSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             SCEEEEEECSTTSS-HHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             CCCEEEEECCCCCC-HHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhH
Confidence            35799999999999 99999999987642  33333333333445666664  467889998643222            


Q ss_pred             cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595           69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  148 (207)
Q Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~  148 (207)
                      ....++..+|++++|+|++.....+.  ..+...+...  +.|+++|+||+|+......          ...+..+..+.
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~~--~~~~i~v~nK~D~~~~~~~----------~~~~~~~~~~~  149 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQD--QRMAGLMERR--GRASVVVFNKWDLVVHREK----------RYDEFTKLFRE  149 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSTTGGG----------CHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEeecccccchhhH--HHHHHHHHHc--CCceeeeccchhhhcchhh----------hhhhHHHHHHH
Confidence            22234567999999999987655444  3455555543  7899999999998765542          33333333332


Q ss_pred             ----hCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          149 ----IGASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       149 ----~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                          .+..+++++||++|.|++++++.|.+.+.
T Consensus       150 ~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         150 KLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             HCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                34458899999999999999999976553

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=5.6e-21  Score=140.55  Aligned_cols=119  Identities=13%  Similarity=0.051  Sum_probs=89.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc-ccccceecCCcEEEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFVLA   83 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~d~~i~v   83 (207)
                      .+|+++|.+++| ||||+++|+++.+... .||.+.++......++..+.+.+||++|++.++ ..+..++..++++++|
T Consensus         1 k~V~ivG~~~~G-KTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v   78 (207)
T d2fh5b1           1 RAVLFVGLCDSG-KTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV   78 (207)
T ss_dssp             CEEEEECSTTSS-HHHHHHHHHHSCCCCB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred             CEEEEECCCCCC-HHHHHHHHHcCCCCcc-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceE
Confidence            379999999999 9999999999887654 466665554333335567889999999999875 4677888999999999


Q ss_pred             EeCCChhhH-HHHHHHHHHHHhh---cCCCCcEEEEeeCCCcccCc
Q 028595           84 FSLVSRASY-ENVLKKWIPELQH---YSPGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        84 ~d~~~~~s~-~~~~~~~~~~i~~---~~~~~piivv~nK~D~~~~~  125 (207)
                      +|+++..+. .+....+...+..   ....+|++|++||+|++...
T Consensus        79 ~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          79 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            999998764 3432333333322   22468999999999997644

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.83  E-value=5.2e-21  Score=137.75  Aligned_cols=161  Identities=15%  Similarity=0.047  Sum_probs=106.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeee-----e---eeEEEECCeEEEEEEEeCCCCccccccccceec
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDN-----F---SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR   75 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~-----~---~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~   75 (207)
                      ..+|+++|.+++| ||||+|+|++.........+....     .   ...+..++  ..+.++|++|+..+.......+.
T Consensus         5 ~inIaiiG~~naG-KSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           5 NINLGIFGHIDHG-KTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEECTTSS-HHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCc-HHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            4689999999999 999999998654322211111111     1   11222233  56789999999988887778888


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-C--Cc
Q 028595           76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-G--AS  152 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~--~~  152 (207)
                      .+|++++|+|.++....+..  .....+..  .++|+++|+||+|+.+....        ....+..+.+.+.. +  ..
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~--~~~~~~~~--~~~p~iiv~NKiD~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  149 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTG--EHMLILDH--FNIPIIVVITKSDNAGTEEI--------KRTEMIMKSILQSTHNLKNS  149 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHH--HHHHHHHH--TTCCBCEEEECTTSSCHHHH--------HHHHHHHHHHHHHSSSGGGC
T ss_pred             hccccccccccccccchhhh--hhhhhhhh--cCCcceeccccccccCHHHH--------HHHHHHHHHHHHHhhcCCCC
Confidence            99999999999986544433  22333333  37999999999999765421        00112222333321 2  23


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          153 YYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      +++++||++|+|++++++.|++.+.+.
T Consensus       150 ~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         150 SIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             eEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            789999999999999999999888654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=1e-19  Score=131.13  Aligned_cols=152  Identities=14%  Similarity=0.113  Sum_probs=97.9

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc---------------ccc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN---------------RLR   70 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------------~~~   70 (207)
                      .|+++|.+++| ||||+|+|++.+......|..+.. ...+...+    +.+|||||.....               ...
T Consensus         2 ~I~lvG~~nvG-KSsLin~l~~~~~~~~~~~g~T~~-~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVG-KSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSS-HHHHHHHHHSCCCSSSSSTTCTTS-CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHhCCCceeeCCCCEeec-cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            58999999999 999999999887543333322111 22233233    5689999942211               112


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHH---------HHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVL---------KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ  141 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~---------~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~  141 (207)
                      ...++.+|++++|+|.+.........         ..+.+.+..  .++|+++|+||+|+.+..+             ..
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~-------------~~  140 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQ-------------EV  140 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHH-------------HH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHH-------------HH
Confidence            34456799999999987653332220         123333433  3799999999999865432             22


Q ss_pred             HHHHHHHhCC------cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          142 GEELRKQIGA------SYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       142 ~~~~~~~~~~------~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      ...+.+.++.      ..++++||++|.|++++++.+.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         141 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            2223333322      247899999999999999999988764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=2.2e-20  Score=134.99  Aligned_cols=159  Identities=16%  Similarity=0.103  Sum_probs=98.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEE-CCeEEEEEEEeCCCCcc----ccccccce---ec
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED----YNRLRPLS---YR   75 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~----~~~~~~~~---~~   75 (207)
                      ..|+++|.+||| ||||+|+|++.+... .+.+++.......... ++  ..+.+|||||..+    ...+...+   +.
T Consensus         2 ~~VaiiG~~nvG-KSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~   78 (185)
T d1lnza2           2 ADVGLVGFPSVG-KSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIE   78 (185)
T ss_dssp             CCEEEESSTTSS-HHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             CeEEEECCCCCC-HHHHHHHHhCCCCceecCCCceEeeeeceeEecCC--cEEEEecCCCcccCchHHHHHHHHHHHHHH
Confidence            479999999999 999999998776432 2323222222222222 33  3467999999532    12222222   34


Q ss_pred             CCcEEEEEEeCCChhhHHHHH--HHHHHHHh---hcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           76 GADVFVLAFSLVSRASYENVL--KKWIPELQ---HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        76 ~~d~~i~v~d~~~~~s~~~~~--~~~~~~i~---~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      .++.++++.+....+......  ..+.....   ....++|+++|+||+|+.+..              +..+.+.+.++
T Consensus        79 ~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~--------------~~~~~~~~~~~  144 (185)
T d1lnza2          79 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLT  144 (185)
T ss_dssp             HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCC
T ss_pred             HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH--------------HHHHHHHHHhc
Confidence            578888888766443222210  11111111   111478999999999986532              23344444442


Q ss_pred             -CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595          151 -ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  180 (207)
Q Consensus       151 -~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  180 (207)
                       ..+++.+||++|.|++++++.+.+.+.+.+
T Consensus       145 ~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         145 DDYPVFPISAVTREGLRELLFEVANQLENTP  175 (185)
T ss_dssp             SCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHhhhhCC
Confidence             237899999999999999999999886543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=3e-19  Score=129.99  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=95.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCcccc-------------ccc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYN-------------RLR   70 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~-------------~~~   70 (207)
                      .+|+++|.+++| ||||+|+|++.+......+..+.+... ......   .+.+.|++|-....             ...
T Consensus        24 ~~I~lvG~~n~G-KSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          24 PEIALAGRSNVG-KSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CEEEEEEBTTSS-HHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCC-HHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhh
Confidence            479999999999 999999999876433322222222211 222222   23456665522111             112


Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-  149 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-  149 (207)
                      ...+..+|+++++.|++++....+  ..+++.+...  ++|+++|+||+|+.+..+           ..+..+.+.+.+ 
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~~~--~~~~~~l~~~--~~piivv~NK~D~~~~~~-----------~~~~~~~~~~~l~  164 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSNDD--VQMYEFLKYY--GIPVIVIATKADKIPKGK-----------WDKHAKVVRQTLN  164 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCGGG-----------HHHHHHHHHHHHT
T ss_pred             hccccchhhhhhhhhccccccccc--cccccccccc--cCcceechhhccccCHHH-----------HHHHHHHHHHHhc
Confidence            234456799999999987654443  3566666553  789999999999865543           333344444433 


Q ss_pred             --CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595          150 --GASYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       150 --~~~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                        ...+++.+||++|.|+++++++|.+.+
T Consensus       165 ~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         165 IDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence              234789999999999999999998876

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.77  E-value=1.5e-19  Score=134.73  Aligned_cols=167  Identities=16%  Similarity=0.123  Sum_probs=104.1

Q ss_pred             EEEEecccccceeeeeeeccCCCCCccccCceeeee-----------------eeEEEECCeEEEEEEEeCCCCcccccc
Q 028595            7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-----------------SANVVAEGTTVNLGLWDTAGQEDYNRL   69 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-----------------~~~~~~~~~~~~l~i~D~~G~~~~~~~   69 (207)
                      |+++|.+++| ||||+++|++..........+....                 .....++.....+.++||||++.|...
T Consensus         8 IaIiGh~d~G-KSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           8 VSVLGHVDHG-KTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEECSTTSS-HHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEeCCCcc-HHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            9999999999 9999999986532211111111000                 000112223456789999999999888


Q ss_pred             ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC-------CCcccCH---
Q 028595           70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP-------GLVPVTT---  139 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~-------~~~~v~~---  139 (207)
                      ....+..+|++|+|+|+.+.-..+..  ..+..+...  ++|+++++||+|+..........+       ....+..   
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccchh--HHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            88889999999999999875444442  444444443  789999999999876543211000       0000000   


Q ss_pred             HHHHHHHHH---h--------------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595          140 AQGEELRKQ---I--------------GASYYIECSSKTQQNVKAVFDAAIKVVIK  178 (207)
Q Consensus       140 ~~~~~~~~~---~--------------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  178 (207)
                      +........   .              +..+++.+||.+|.|++++++.+.....+
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            111111111   1              12368899999999999999998876543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=6.1e-19  Score=126.41  Aligned_cols=157  Identities=14%  Similarity=0.071  Sum_probs=106.2

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCcc-ccCcee-eeeeeEEEECCeEEEEEEEeCCCCcc---------ccccccce
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWD-YIPTVF-DNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLS   73 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~   73 (207)
                      ..|+++|.++|| ||||+|+|++.+.... +.++.. .........+.  ..+..||++|...         .......+
T Consensus         6 ~~I~iiG~~nvG-KSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           6 GFIAIVGRPNVG-KSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEECSSSSS-HHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             cEEEEECCCCCC-HHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccc
Confidence            468999999999 9999999998764322 222222 22233344444  3455788887432         12233344


Q ss_pred             ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595           74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  153 (207)
Q Consensus        74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (207)
                      ...+++++++.|..+.......   +...+.+  ...|.+++.||.|.......          .....+.+...++..+
T Consensus        83 ~~~~~~~l~~~d~~~~~~~~~~---~~~~l~~--~~~~~i~v~~k~d~~~~~~~----------~~~~~~~~~~~~~~~~  147 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPDDEM---VLNKLRE--GKAPVILAVNKVDNVQEKAD----------LLPHLQFLASQMNFLD  147 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHHHHH---HHHHHHS--SSSCEEEEEESTTTCCCHHH----------HHHHHHHHHTTSCCSE
T ss_pred             hhhcceeEEEEecCccchhHHH---HHHHhhh--ccCceeeeeeeeeccchhhh----------hhhHhhhhhhhcCCCC
Confidence            5668888889987764433332   2223333  36789999999998766542          4456677777788779


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          154 YIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                      ++++||++|.|++++++.+++.+.+.
T Consensus       148 ~~~vSA~~g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         148 IVPISAETGLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             EEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             EEEEeCcCCCCHHHHHHHHHHhCCCC
Confidence            99999999999999999998887543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.71  E-value=2.9e-18  Score=124.76  Aligned_cols=162  Identities=11%  Similarity=0.048  Sum_probs=103.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcc---ccC--ceeeeeee-EE-------------------EECCeEEEEEEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD---YIP--TVFDNFSA-NV-------------------VAEGTTVNLGLW   58 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~---~~~--t~~~~~~~-~~-------------------~~~~~~~~l~i~   58 (207)
                      .++|+++|..++| ||||+++|++......   ...  |....+.. ..                   ........+.++
T Consensus         5 ~inIaiiGhvd~G-KSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           5 EVNIGMVGHVDHG-KTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             cEEEEEEeccCCc-HHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            4689999999999 9999999986432110   000  00000000 00                   011234678999


Q ss_pred             eCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccC
Q 028595           59 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT  138 (207)
Q Consensus        59 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~  138 (207)
                      ||||++.|.......+..+|++++|.|+.+....... .+.+..+... ...+++++.||+|+.+....        ...
T Consensus        84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t-~e~~~~~~~~-~~~~iiv~inK~D~~d~~~~--------~~~  153 (195)
T d1kk1a3          84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQII-GQKNIIIAQNKIELVDKEKA--------LEN  153 (195)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHHH--------HHH
T ss_pred             ccchhhhhhHHhhcccccccccccccchhhhhhhhhh-HHHHHHHHHh-cCccceeeeecccchhhHHH--------HHH
Confidence            9999999987777778889999999999885322222 2233333332 13558889999998765431        002


Q ss_pred             HHHHHHHHHHhC--CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595          139 TAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       139 ~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      .....++....+  ..+++++||++|+|++++++.+.+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         154 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            233444444433  23789999999999999999988765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.69  E-value=1.4e-17  Score=122.06  Aligned_cols=164  Identities=12%  Similarity=0.034  Sum_probs=101.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCcc---cc--Cc--ee-eeeeeEEE----------------------ECCeEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWD---YI--PT--VF-DNFSANVV----------------------AEGTTVN   54 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~---~~--~t--~~-~~~~~~~~----------------------~~~~~~~   54 (207)
                      ++|+++|.-++| ||||+++|++..-...   ..  .+  .+ ........                      .......
T Consensus         9 ini~iiGhVd~G-KSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   87 (205)
T d2qn6a3           9 VNIGVVGHVDHG-KTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   87 (205)
T ss_dssp             EEEEEECSTTSS-HHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             eEEEEEEccCCc-HHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence            689999999999 9999999986321100   00  00  00 00000000                      0112346


Q ss_pred             EEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC
Q 028595           55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL  134 (207)
Q Consensus        55 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~  134 (207)
                      +.+.|+||+..|-......+..+|++|+|.|..+.-..... ...+..+... .-.|++|+.||+|+.+....       
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t-~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~~-------  158 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGII-GVKNLIIVQNKVDVVSKEEA-------  158 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHH-HHHHHHHHHT-TCCCEEEEEECGGGSCHHHH-------
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhH-HHHHHHHHHc-CCceeeeccccCCCccchHH-------
Confidence            88999999999877666667789999999999875211111 2222233332 23589999999999765431       


Q ss_pred             cccCHHHHHHHHHHhC--CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595          135 VPVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       135 ~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  179 (207)
                       .........+.....  ..+++.+||++|.|++++++.+...+..+
T Consensus       159 -~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~P  204 (205)
T d2qn6a3         159 -LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  204 (205)
T ss_dssp             -HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             -HHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCCC
Confidence             001122333333322  23789999999999999999998876653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.65  E-value=2.2e-17  Score=119.84  Aligned_cols=162  Identities=14%  Similarity=0.080  Sum_probs=107.6

Q ss_pred             eeEEEEecccccceeeeeeeccCC-----CCCc------cccCc---eeeee-eeEEEECCeEEEEEEEeCCCCcccccc
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR-----SSIW------DYIPT---VFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL   69 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~-----~~~~------~~~~t---~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~   69 (207)
                      .+|+++|..++| ||||+++|++.     .-..      ...+.   -|.+. ...+.+......+.++||||+..|-..
T Consensus         4 ini~iiGHvd~G-KSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           4 VNVGTIGHVDHG-KTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEESSTTSS-HHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             cEEEEEeCCCCc-HHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            689999999999 99999998731     0000      00010   01111 122333344567889999999998777


Q ss_pred             ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595           70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  149 (207)
Q Consensus        70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (207)
                      ....+..+|++++|+|..+...-+..  +.+..+... ...|++++.||+|+..+.+.+.       ....+.+.+...+
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT~--~~~~~a~~~-~~~~iIv~iNK~D~~~~~~~~~-------~i~~~i~~~l~~~  152 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI-GVEHVVVYVNKADAVQDSEMVE-------LVELEIRELLTEF  152 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCCEEEEEECGGGCSCHHHHH-------HHHHHHHHHHHHT
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhHH--HHHHHHHHh-cCCcEEEEEecccccccHHHHH-------HHHHHHHHHHHHh
Confidence            77777889999999999986544432  333343332 2467999999999876433100       0223566677766


Q ss_pred             CC----cEEEEeccCCC----------CCHHHHHHHHHHHHh
Q 028595          150 GA----SYYIECSSKTQ----------QNVKAVFDAAIKVVI  177 (207)
Q Consensus       150 ~~----~~~~e~Sa~~~----------~~i~~~f~~i~~~~~  177 (207)
                      +.    .+++.+||++|          .++.++++.+.+.+.
T Consensus       153 ~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            65    47999999988          588999988876654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=6.8e-16  Score=110.63  Aligned_cols=161  Identities=10%  Similarity=-0.102  Sum_probs=85.3

Q ss_pred             cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCcccccc----------cc
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRL----------RP   71 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~----------~~   71 (207)
                      ...+|+++|.+|+| ||||+|++++.+.........+.... ...........+..++.++.......          ..
T Consensus        15 ~~~~I~lvG~~NvG-KSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (188)
T d1puia_          15 TGIEVAFAGRSNAG-KSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL   93 (188)
T ss_dssp             CSEEEEEEECTTSS-HHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCC-HHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhh
Confidence            35799999999999 99999999988754332222222221 12222222222223332222111110          11


Q ss_pred             ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-
Q 028595           72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-  150 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  150 (207)
                      ......+.++.+.+..........  .+...+..  ...|+++++||.|+.+....        ....+..++....++ 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~v~~k~D~~~~~~~--------~~~~~~~~~~l~~~~~  161 (188)
T d1puia_          94 EKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASGAR--------KAQLNMVREAVLAFNG  161 (188)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHHHH--------HHHHHHHHHHHGGGCS
T ss_pred             hhhhheeEEEEeecccccchhHHH--HHHHHhhh--ccccccchhhhhhccCHHHH--------HHHHHHHHHHHHhhCC
Confidence            112344566666666665444443  44444444  37889999999998765431        001122233333332 


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKVV  176 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~  176 (207)
                      ..+++.+||++|.|++++++.|.+.+
T Consensus       162 ~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         162 DVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            34789999999999999999886543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=4.6e-16  Score=113.75  Aligned_cols=115  Identities=10%  Similarity=0.054  Sum_probs=78.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccccccee----cCCcE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY----RGADV   79 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~----~~~d~   79 (207)
                      ...|+++|.+++| ||||+|+|+++++.    |+++.. .....++.....+.+||+||++.+...+..++    ..++.
T Consensus         3 ~p~V~lvG~~n~G-KTSLln~l~~~~~~----~~tt~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSG-KTSLLTLLTTDSVR----PTVVSQ-EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSS-HHHHHHHHHHSSCC----CBCCCS-SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCC-HHHHHHHHhCCCCC----CeEEec-ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4579999999999 99999999988754    333221 12223344456678999999998776655544    34578


Q ss_pred             EEEEEeCCC-hhhHHHHHHHH----HHHHhhcC-CCCcEEEEeeCCCcccCc
Q 028595           80 FVLAFSLVS-RASYENVLKKW----IPELQHYS-PGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        80 ~i~v~d~~~-~~s~~~~~~~~----~~~i~~~~-~~~piivv~nK~D~~~~~  125 (207)
                      +++++|..+ ..++... ..|    ...+.... .++|+++|+||+|+.+..
T Consensus        77 ~i~~vd~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHH-HHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            888888664 4555544 333    33333333 589999999999987654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=2.1e-15  Score=110.09  Aligned_cols=146  Identities=17%  Similarity=0.104  Sum_probs=92.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCC--------CCC----ccccCce---eeee-eeEEEECCeEEEEEEEeCCCCcccc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR--------SSI----WDYIPTV---FDNF-SANVVAEGTTVNLGLWDTAGQEDYN   67 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~--------~~~----~~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~   67 (207)
                      .++|+++|..++| ||||+++|+..        ...    .++.+.-   |.+. .....+......+.++||||+..|-
T Consensus         3 ~ini~iiGhvd~G-KSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           3 HVNVGTIGHVDHG-KTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             EEEEEEECSTTSS-HHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CeEEEEEeCCCCc-HHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            3689999999999 99999999621        100    0111100   1111 1122222334567899999999998


Q ss_pred             ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595           68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR  146 (207)
Q Consensus        68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~  146 (207)
                      ......+..+|++|+|+|+.+....+..  +.+..+...  ++| ++++.||.|+.+..+.+.       ...++.+.+.
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~--~~~~~~~~~--gi~~iiv~iNK~D~~~~~~~~~-------~~~~~i~~~l  150 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPELLD-------LVEMEVRDLL  150 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEecccCCCHHHHH-------HHHHHHHHHH
Confidence            8777788899999999999987666654  334444433  665 788899999865432100       0234555666


Q ss_pred             HHhCC----cEEEEeccCC
Q 028595          147 KQIGA----SYYIECSSKT  161 (207)
Q Consensus       147 ~~~~~----~~~~e~Sa~~  161 (207)
                      ..++.    .+++..|+..
T Consensus       151 ~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         151 NQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHTTSCTTTSCEEECCHHH
T ss_pred             HhcCCCcccceeeeeechh
Confidence            55543    3678888763

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.49  E-value=4.4e-14  Score=104.10  Aligned_cols=152  Identities=13%  Similarity=0.033  Sum_probs=95.3

Q ss_pred             ceeEEEEecccccceeeeeeeccC--CCCCcc----cc-----------C--------------ceeeee-eeEEEECCe
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG--RSSIWD----YI-----------P--------------TVFDNF-SANVVAEGT   51 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~--~~~~~~----~~-----------~--------------t~~~~~-~~~~~~~~~   51 (207)
                      ..+|+++|--.+| ||||+.+|+.  +.+...    +.           +              .-+.+. .........
T Consensus         9 ~~~i~viGHVd~G-KSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~   87 (222)
T d1zunb3           9 MLRFLTCGNVDDG-KSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA   87 (222)
T ss_dssp             EEEEEEECCTTSS-HHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             cceEEEEcCCCCC-HHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEecc
Confidence            4689999999999 9999999852  111100    00           0              000000 111111122


Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccC
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLAD  130 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~  130 (207)
                      ...+.++|+||++.|-.....-+..+|++++|.|+.+...-+..  ..+..+...  ++| ++++.||.|+.+..+.   
T Consensus        88 ~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~--e~~~~~~~~--gv~~iiv~vNK~D~~~~~~~---  160 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDER---  160 (222)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHH---
T ss_pred             ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH--HHHHHHHHc--CCCEEEEEEEccccccccce---
Confidence            35688999999999977666677889999999999876544443  233333332  544 8899999999865431   


Q ss_pred             CCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHH
Q 028595          131 HPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVK  166 (207)
Q Consensus       131 ~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~  166 (207)
                         .......+...+++..++    .+|+++||.+|+|+.
T Consensus       161 ---~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         161 ---VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             ---HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ---ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence               000122345666666654    367899999999884

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.33  E-value=1.4e-12  Score=97.31  Aligned_cols=157  Identities=15%  Similarity=0.033  Sum_probs=80.7

Q ss_pred             eeEEEEecccccceeeeeeeccC--CCCCcc----------------------ccCce-----eeee-eeEEEECCeEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG--RSSIWD----------------------YIPTV-----FDNF-SANVVAEGTTVN   54 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~--~~~~~~----------------------~~~t~-----~~~~-~~~~~~~~~~~~   54 (207)
                      ++|+++|--.+| ||||+.+|+.  +.+...                      .....     +... ............
T Consensus        25 iNi~iiGHVD~G-KSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~  103 (245)
T d1r5ba3          25 VNIVFIGHVDAG-KSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR  103 (245)
T ss_dssp             EEEEEEECGGGT-HHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred             eEEEEEeeCCCC-HHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccce
Confidence            479999999999 9999999842  111100                      00000     0000 000011122356


Q ss_pred             EEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHH------HHHHHHHHHHhhcCCCC-cEEEEeeCCCcccCccc
Q 028595           55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE------NVLKKWIPELQHYSPGV-PVVLVGTKLDLREDKHY  127 (207)
Q Consensus        55 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~i~~~~~~~-piivv~nK~D~~~~~~~  127 (207)
                      +.+.|+||+..|-.....-...+|++++|.|+.+...-.      .. ...+..+...  ++ +++++.||.|+......
T Consensus       104 i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT-~e~l~l~~~~--~i~~iiv~iNKmD~~~~~~~  180 (245)
T d1r5ba3         104 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLARTQ--GINHLVVVINKMDEPSVQWS  180 (245)
T ss_dssp             EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHHT--TCSSEEEEEECTTSTTCSSC
T ss_pred             eeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccch-HHHHHHHHHc--CCCeEEEEEEcCCCCccchh
Confidence            899999999999888877888899999999998742110      11 1222222222  44 48899999998643210


Q ss_pred             ccCCCCCcccCHHHHHHHHHHh-CC-----cEEEEeccCCCCCHHHHH
Q 028595          128 LADHPGLVPVTTAQGEELRKQI-GA-----SYYIECSSKTQQNVKAVF  169 (207)
Q Consensus       128 ~~~~~~~~~v~~~~~~~~~~~~-~~-----~~~~e~Sa~~~~~i~~~f  169 (207)
                          ........++.+.+.... +.     .+++++||++|+||.+++
T Consensus       181 ----e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         181 ----EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ----HHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence                000000123334443443 22     378999999999997653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.1e-12  Score=104.74  Aligned_cols=165  Identities=12%  Similarity=0.044  Sum_probs=93.9

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCcc-ccCce--eeee-eeEEEECCeEEEEEEEeCCCCcccccc-----cccee
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD-YIPTV--FDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL-----RPLSY   74 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~-~~~t~--~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~-----~~~~~   74 (207)
                      ..+|+++|.+|+| ||||+|.|.+...... ..++.  +.+. ...+...+ .-.+.+|||||-......     ....+
T Consensus        56 ~l~Iai~G~~n~G-KSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          56 VLNVAVTGETGSG-KSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CEEEEEEECTTSS-HHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CcEEEEECCCCCC-HHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            5789999999999 9999999998654322 11111  1111 11222221 224679999995443222     22335


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH----HH----HHHHH
Q 028595           75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT----AQ----GEELR  146 (207)
Q Consensus        75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~----~~----~~~~~  146 (207)
                      ..+|+++++.|..-  +-.+  ..++..+.+.  +.|+++|.||+|....... .  ..+.....    ++    .....
T Consensus       134 ~~~d~~l~~~~~~~--~~~d--~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~-~--~~~~~~~~e~~l~~ir~~~~~~l  204 (400)
T d1tq4a_         134 YEYDFFIIISATRF--KKND--IDIAKAISMM--KKEFYFVRTKVDSDITNEA-D--GEPQTFDKEKVLQDIRLNCVNTF  204 (400)
T ss_dssp             GGCSEEEEEESSCC--CHHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHH-T--TCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hcceEEEEecCCCC--CHHH--HHHHHHHHHc--CCCEEEEEeCcccccchhh-h--cccccccHHHHHHHHHHHHHHHH
Confidence            56888888877543  2233  2455566553  7999999999996422110 0  00000111    11    12222


Q ss_pred             HHhC--CcEEEEeccCC--CCCHHHHHHHHHHHHhCC
Q 028595          147 KQIG--ASYYIECSSKT--QQNVKAVFDAAIKVVIKP  179 (207)
Q Consensus       147 ~~~~--~~~~~e~Sa~~--~~~i~~~f~~i~~~~~~~  179 (207)
                      +..+  ..+.|.+|..+  ..++.++.+.+.+.+...
T Consensus       205 ~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         205 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            3323  23678888764  458999998888877654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=1.9e-12  Score=97.85  Aligned_cols=132  Identities=13%  Similarity=0.132  Sum_probs=91.8

Q ss_pred             CccceeEEEEecccccceeeeeeeccCC--CCC-----------ccccCce---eeee---eeEEEECCeEEEEEEEeCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGR--SSI-----------WDYIPTV---FDNF---SANVVAEGTTVNLGLWDTA   61 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~--~~~-----------~~~~~t~---~~~~---~~~~~~~~~~~~l~i~D~~   61 (207)
                      |+...+|+++|..++| ||||+.+++..  ...           .++.|.-   +.+.   ...+..++  ..++++|||
T Consensus         3 ~~~iRni~i~gh~~~G-KTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtP   79 (276)
T d2bv3a2           3 LKRLRNIGIAAHIDAG-KTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAP   79 (276)
T ss_dssp             GGGEEEEEEEECTTSC-HHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCC
T ss_pred             hhhceEEEEEeCCCCC-HHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCC
Confidence            4567799999999999 99999998621  111           0111100   0001   11223333  678999999


Q ss_pred             CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595           62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ  141 (207)
Q Consensus        62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~  141 (207)
                      |+..|-......++-+|++|+|+|..+.-..+.. ..|. ...++  ++|.+++.||.|....+            ...-
T Consensus        80 G~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~-~~w~-~a~~~--~lP~i~fINKmDr~~ad------------~~~~  143 (276)
T d2bv3a2          80 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWR-QAEKY--KVPRIAFANKMDKTGAD------------LWLV  143 (276)
T ss_dssp             SSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHH-HHHH-HHHTT--TCCEEEEEECTTSTTCC------------HHHH
T ss_pred             chhhhHHHHHHHHHhhhheEEeccccCCcchhHH-HHHH-HHHHc--CCCEEEEEecccccccc------------cchh
Confidence            9999999888899999999999999998777765 4443 44433  89999999999987654            4455


Q ss_pred             HHHHHHHhCC
Q 028595          142 GEELRKQIGA  151 (207)
Q Consensus       142 ~~~~~~~~~~  151 (207)
                      ..++.+.++.
T Consensus       144 l~ei~~~l~~  153 (276)
T d2bv3a2         144 IRTMQERLGA  153 (276)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHHhCC
Confidence            6666666764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.28  E-value=5e-12  Score=95.18  Aligned_cols=112  Identities=18%  Similarity=0.145  Sum_probs=78.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCC--CCCc----cccCce----------eeee---eeEEEECCeEEEEEEEeCCCCc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR--SSIW----DYIPTV----------FDNF---SANVVAEGTTVNLGLWDTAGQE   64 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~----~~~~t~----------~~~~---~~~~~~~~~~~~l~i~D~~G~~   64 (207)
                      ..+|+++|..++| ||||+.+++..  ....    ....|.          +.+.   ...+..++  ..++++||||+.
T Consensus         2 iRNv~iiGh~~~G-KTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~   78 (267)
T d2dy1a2           2 IRTVALVGHAGSG-KTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYG   78 (267)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSG
T ss_pred             eeEEEEEcCCCCc-HHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchh
Confidence            4689999999999 99999998521  1100    000111          0011   11233344  568899999999


Q ss_pred             cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      .|.......++-+|++|+|.|..+.-..+.. ..| ....+.  ++|.+++.||.|..
T Consensus        79 dF~~e~~~al~~~D~avlvvda~~Gv~~~t~-~~~-~~~~~~--~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          79 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAW-TVAERL--GLPRMVVVTKLDKG  132 (267)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCEEEEEECGGGC
T ss_pred             hhhhhhhhhhcccCceEEEeeccCCccchhH-HHH-Hhhhhc--cccccccccccccc
Confidence            9988888889999999999999987666664 334 344443  89999999999974

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.27  E-value=4.6e-13  Score=98.89  Aligned_cols=157  Identities=11%  Similarity=0.001  Sum_probs=92.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCC--CCcc------------------------ccC---ceeeee-eeEEEECCeEEE
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS--SIWD------------------------YIP---TVFDNF-SANVVAEGTTVN   54 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~--~~~~------------------------~~~---t~~~~~-~~~~~~~~~~~~   54 (207)
                      .+|+++|--.+| ||||+.+|+...  ....                        +.+   .-+.+. ............
T Consensus         4 iNi~viGHVd~G-KTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           4 LNLIVIGHVDHG-KSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEESTTSS-HHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             cEEEEEecCCCC-HHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            689999999999 999999885211  0000                        000   001011 111112233467


Q ss_pred             EEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHH-----HHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc
Q 028595           55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV-----LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA  129 (207)
Q Consensus        55 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-----~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~  129 (207)
                      +.+.||||+..|-.....-+.-+|++|+|.|+.+....+..     ....+...... .-.+++++.||.|+......  
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~~~~iIv~iNK~D~~~~~~~--  159 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPYD--  159 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTTC--
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-CCCceEEEEEcccCCCcccc--
Confidence            89999999999988877788889999999999975322110     01111121111 23568999999998753210  


Q ss_pred             CCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHH
Q 028595          130 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  167 (207)
Q Consensus       130 ~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~  167 (207)
                        .........+...+...++.    .+++++||..|.|+.+
T Consensus       160 --~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 --EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             --HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence              00000122345555565543    3688999999999853

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=3.2e-12  Score=95.03  Aligned_cols=153  Identities=11%  Similarity=-0.028  Sum_probs=94.5

Q ss_pred             ceeEEEEecccccceeeeeeeccC--CCCCc------------------------cccC---ceeeee-eeEEEECCeEE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG--RSSIW------------------------DYIP---TVFDNF-SANVVAEGTTV   53 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~--~~~~~------------------------~~~~---t~~~~~-~~~~~~~~~~~   53 (207)
                      ..+|+++|--.+| ||||+.+|+.  +.+..                        ++.+   .-|.+. .....+.-...
T Consensus         6 ~iNi~iiGHvD~G-KsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           6 HINVVVIGHVDSG-KSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEECTTSC-HHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             ccEEEEEeCCCCC-HHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            3699999999999 9999998852  11000                        0000   001111 11111222347


Q ss_pred             EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh-------HHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCc
Q 028595           54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-------YENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDK  125 (207)
Q Consensus        54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~  125 (207)
                      .+.+.|+||+..|-.....-+..+|++|+|.|..+...       .+..  ..+......  ++| ++++.||.|+.+..
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~--eh~~~~~~~--gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR--EHALLAFTL--GVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH--HHHHHHHHT--TCCEEEEEEECGGGGTTC
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHH--HHHHHHHHc--CCCeEEEEEECCCCCCCC
Confidence            88999999999998777777888999999999986421       1111  222222222  555 88999999987643


Q ss_pred             ccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHH
Q 028595          126 HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  167 (207)
Q Consensus       126 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~  167 (207)
                      ..      ......++...+....+.    .+++.+|+.+|.|+.+
T Consensus       161 ~~------~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ES------RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HH------HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HH------HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            21      000123456666666664    3689999999988744

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=4e-12  Score=98.82  Aligned_cols=114  Identities=14%  Similarity=0.118  Sum_probs=79.8

Q ss_pred             ceeEEEEecccccceeeeeeeccCC--CCCc------cccCce------eeee-eeEEE----------------ECCeE
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR--SSIW------DYIPTV------FDNF-SANVV----------------AEGTT   52 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~------~~~~t~------~~~~-~~~~~----------------~~~~~   52 (207)
                      ..+|+++|..++| ||||+.+|+..  ....      .+..+.      +.+. ...+.                .+++.
T Consensus        17 IRNI~iiGhvd~G-KTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          17 VRNMSVIAHVDHG-KSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             EEEEEEECCGGGT-HHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             CcEEEEEeCCCCc-HHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            4589999999999 99999998611  1100      000000      0000 00111                13467


Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  122 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~  122 (207)
                      +.++++||||+..|.......++-+|++++|+|+.+.-..+.. ..|......   +.|++++.||+|..
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~~---~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALGE---RIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHHc---CCCeEEEEECcccc
Confidence            8899999999999999888899999999999999998777765 444444333   89999999999975

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.14  E-value=2.1e-11  Score=91.61  Aligned_cols=118  Identities=13%  Similarity=0.022  Sum_probs=72.2

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCc--cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc-------cc--
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR-------PL--   72 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~--   72 (207)
                      ..+|+++|.+++| ||||+|.+++.....  ...+++..........+|  ..+.++||||-.......       ..  
T Consensus        32 ~l~I~LvG~tg~G-KSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          32 SLTILVMGKGGVG-KSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             EEEEEEEESTTSS-HHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCc-HHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            4689999999999 999999999887432  223333333344556676  468899999954321111       11  


Q ss_pred             eecCCcEEEEEEeCCCh-hhH--HHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595           73 SYRGADVFVLAFSLVSR-ASY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  125 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~-~s~--~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~  125 (207)
                      .....+++++|.+++.. -+.  ......+...+.. .--.++++|.||+|..+..
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~-~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK-GIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECCSCCCGG
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch-hhhhCEEEEEECcccCCcC
Confidence            12346889999887653 121  1121222222211 1135799999999987644

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.89  E-value=1.4e-10  Score=85.84  Aligned_cols=121  Identities=15%  Similarity=0.098  Sum_probs=65.7

Q ss_pred             EEEEEEeCCCCccccccccc---ee--cCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595           53 VNLGLWDTAGQEDYNRLRPL---SY--RGADVFVLAFSLV---SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  124 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~---~~--~~~d~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~  124 (207)
                      ..+.+.|+||+..+......   ..  ...++++++.|..   ++......  .+........-..|.+++.||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~--~l~~~~~~~~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFV--RFFALLIDLRLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHH--HHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhH--HHHHHHHHHHhCCCceeeeeccccccH
Confidence            45789999998765322111   11  1356889999875   34443332  111111111127899999999998764


Q ss_pred             ccccc----------------CCCCCcc-cCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595          125 KHYLA----------------DHPGLVP-VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  175 (207)
Q Consensus       125 ~~~~~----------------~~~~~~~-v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  175 (207)
                      .....                ..+.... ..........+..+..+++++||.+|+|+++++..|-+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            32100                0000000 000001111112344588999999999999999988764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.68  E-value=1.1e-08  Score=77.22  Aligned_cols=82  Identities=12%  Similarity=-0.013  Sum_probs=52.3

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCe---------------EEEEEEEeCCCC----c
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGT---------------TVNLGLWDTAGQ----E   64 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~----~   64 (207)
                      .||.+||-|+|| ||||+|++++.+.. ..|.-|+-+...-.+.+.+.               ...+.+.|+||-    .
T Consensus         3 ~~~GivG~Pn~G-KSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           3 FKCGIVGLPNVG-KSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             ceEEEECCCCCC-HHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            599999999999 99999999977642 23433332222223333321               135889999984    2


Q ss_pred             cccccccce---ecCCcEEEEEEeCC
Q 028595           65 DYNRLRPLS---YRGADVFVLAFSLV   87 (207)
Q Consensus        65 ~~~~~~~~~---~~~~d~~i~v~d~~   87 (207)
                      .-..+...|   ++++|+++.|.|..
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence            334455544   56799999999763

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1.3e-08  Score=77.56  Aligned_cols=117  Identities=17%  Similarity=0.122  Sum_probs=71.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEE-----------CC----------------------
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVA-----------EG----------------------   50 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~-----------~~----------------------   50 (207)
                      -+|+++|..++| ||||||.|++..+. ....|++.......+.-           .+                      
T Consensus        27 P~ivvvG~~SsG-KSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          27 PQIAVVGGQSAG-KSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CEEEEEEBTTSC-HHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CeEEEEcCCCCC-HHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            368999999999 99999999998863 33333331111111100           00                      


Q ss_pred             -----------------eEEEEEEEeCCCCccc-------------cccccceecCCc-EEEEEEeCCChhhHHHHHHHH
Q 028595           51 -----------------TTVNLGLWDTAGQEDY-------------NRLRPLSYRGAD-VFVLAFSLVSRASYENVLKKW   99 (207)
Q Consensus        51 -----------------~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~   99 (207)
                                       ....+.++|+||-...             ..+...|+.+.+ ++++|.+.+...+.... ..+
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~-~~~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH-HHH
Confidence                             0123679999994321             133455666666 55667777665555555 455


Q ss_pred             HHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595          100 IPELQHYSPGVPVVLVGTKLDLREDK  125 (207)
Q Consensus       100 ~~~i~~~~~~~piivv~nK~D~~~~~  125 (207)
                      ...+..  ...++++|.||+|..+..
T Consensus       185 ~~~~~~--~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEVDP--QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHCT--TCSSEEEEEECGGGSCTT
T ss_pred             HHHhCc--CCCceeeEEeccccccch
Confidence            555533  246899999999987653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=4.8e-08  Score=73.49  Aligned_cols=115  Identities=15%  Similarity=0.079  Sum_probs=78.5

Q ss_pred             cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595           71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  150 (207)
Q Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  150 (207)
                      ...++.+|++++|.|+.++.+..+-  .+...+    .+.|.++|.||+|+.+..            ..+...++.+..+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~----~~Kp~IlVlNK~DLv~~~------------~~~~w~~~f~~~~   71 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRNP--MIEDIL----KNKPRIMLLNKADKADAA------------VTQQWKEHFENQG   71 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC----SSSCEEEEEECGGGSCHH------------HHHHHHHHHHTTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCCH--HHHHHH----cCCCeEEEEECccCCchH------------HHHHHHHHHHhcC
Confidence            3467889999999999998777653  233333    378999999999997543            2233344444445


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEeeecCCcccc
Q 028595          151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVR  205 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  205 (207)
                      . .++.+|+.++.+..++...+.+.+....+.. ..+...........+|+|+++
T Consensus        72 ~-~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~vvG~PNvG  124 (273)
T d1puja_          72 I-RSLSINSVNGQGLNQIVPASKEILQEKFDRM-RAKGVKPRAIRALIIGIPNVG  124 (273)
T ss_dssp             C-CEEECCTTTCTTGGGHHHHHHHHHHHHHHHH-HHTTCCCCCEEEEEEESTTSS
T ss_pred             C-ccceeecccCCCccccchhhhhhhhhhhhhh-hhccCCCCceEEEEEecCccc
Confidence            5 7889999999999988888776665432222 223334456666788988764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.56  E-value=5.1e-08  Score=74.94  Aligned_cols=104  Identities=12%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595           53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  132 (207)
Q Consensus        53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~  132 (207)
                      +.+.+..|.|.-.-.   ......+|.+++|......+..+....-   .+     ..+=++|.||+|+.+....     
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~g---il-----E~aDi~vvNKaD~~~~~~~-----  207 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERR-----  207 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHH-----
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhh---Hh-----hhhheeeEeccccccchHH-----
Confidence            566778877643221   1233458999999999887766654111   11     1234889999998765442     


Q ss_pred             CCcccCHHHHHHHHHHhC---------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          133 GLVPVTTAQGEELRKQIG---------ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       133 ~~~~v~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                           .......+...+.         .++.+.+||++++|++++++.+.+...
T Consensus       208 -----~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         208 -----ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             -----HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence                 2222222333221         237899999999999999999976654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.48  E-value=5.8e-08  Score=74.59  Aligned_cols=82  Identities=12%  Similarity=0.012  Sum_probs=44.6

Q ss_pred             eEEEEecccccceeeeeeeccCCCCC-ccccCc-----eeeeeee-----------------EEEECCeEEEEEEEeCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSI-WDYIPT-----VFDNFSA-----------------NVVAEGTTVNLGLWDTAG   62 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t-----~~~~~~~-----------------~~~~~~~~~~l~i~D~~G   62 (207)
                      ||.++|.|||| ||||+|++++.+.. ..|.-|     .|..+..                 ..........++++|+||
T Consensus         2 ~v~lvG~pn~G-KStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           2 EIGVVGKPNVG-KSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             EEEEEECTTSS-HHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             cEeEECCCCCC-HHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            79999999999 99999999987642 223212     1221100                 000112346799999999


Q ss_pred             Ccc----cccccc---ceecCCcEEEEEEeCCC
Q 028595           63 QED----YNRLRP---LSYRGADVFVLAFSLVS   88 (207)
Q Consensus        63 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~   88 (207)
                      --.    -..+..   ..++++|++++|.|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            321    122333   34567999999999863

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=3.4e-08  Score=76.03  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=51.1

Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC--
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--  150 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--  150 (207)
                      +...+|.+++|.+....+..+.. +.-+-+       .+=++|.||+|.......        .....+.+...+.+.  
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~-k~gi~e-------~aDi~VvNKaD~~~~~~~--------~~~~~~~~~al~~~~~~  227 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGI-KKGLME-------VADLIVINKDDGDNHTNV--------AIARHMYESALHILRRK  227 (327)
T ss_dssp             HHTTCSEEEEEECC------CCC-CHHHHH-------HCSEEEECCCCTTCHHHH--------HHHHHHHHHHHHHSCCS
T ss_pred             hhhccceEEEEecCCCchhhhhh-chhhhc-------cccEEEEEeecccchHHH--------HHHHHHHHHHhhhcccC
Confidence            44568999999887655555443 222111       223678899998754321        001222333332221  


Q ss_pred             ----CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595          151 ----ASYYIECSSKTQQNVKAVFDAAIKVVI  177 (207)
Q Consensus       151 ----~~~~~e~Sa~~~~~i~~~f~~i~~~~~  177 (207)
                          .++.+.|||.+|+|++++++.|.+...
T Consensus       228 ~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         228 YDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             BTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             CCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence                137899999999999999999976553

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.46  E-value=2.4e-08  Score=76.34  Aligned_cols=68  Identities=22%  Similarity=0.248  Sum_probs=41.7

Q ss_pred             EEEEEeCCCCccc-------------cccccceecCCcEEEEEE-eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCC
Q 028595           54 NLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAF-SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL  119 (207)
Q Consensus        54 ~l~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~  119 (207)
                      .+.++|+||-...             ..++..|+.+++.+|+++ +......-... ..+...+..  ...++++|.||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~-~~~~~~~~~--~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHH-HHHHHHhCc--CCCeEEEEEecc
Confidence            4679999994321             234567888898876665 43332222222 344444432  246899999999


Q ss_pred             CcccC
Q 028595          120 DLRED  124 (207)
Q Consensus       120 D~~~~  124 (207)
                      |....
T Consensus       209 D~~~~  213 (306)
T d1jwyb_         209 DLMDK  213 (306)
T ss_dssp             TSSCS
T ss_pred             ccccc
Confidence            98654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=5.6e-07  Score=65.16  Aligned_cols=87  Identities=15%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-
Q 028595           72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-  150 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  150 (207)
                      -...|.|.+++|+++.+|+--...+..|+-.....  ++|.+||.||+|+.+..            ..+....+...+. 
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~------------~~~~~~~~~~~~~~   71 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDED------------DLRKVRELEEIYSG   71 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHH------------HHHHHHHHHHHHTT
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHH------------HHHHHHHhhccccc
Confidence            34678999999999988754444447787776654  89999999999996543            2233344444332 


Q ss_pred             CcEEEEeccCCCCCHHHHHHHH
Q 028595          151 ASYYIECSSKTQQNVKAVFDAA  172 (207)
Q Consensus       151 ~~~~~e~Sa~~~~~i~~~f~~i  172 (207)
                      ..+.+.+|++++.+++++...+
T Consensus        72 ~~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          72 LYPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             TSCEEECCTTTCTTHHHHHHHH
T ss_pred             ceeEEEeccccchhHhhHHHHh
Confidence            2378999999999999988765

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.31  E-value=2.2e-07  Score=70.63  Aligned_cols=84  Identities=15%  Similarity=0.060  Sum_probs=55.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCe---------------EEEEEEEeCCCC---
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGT---------------TVNLGLWDTAGQ---   63 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~---   63 (207)
                      -.||.++|.|+|| ||||+|.+++...  ...|.-|+-+...-.+.+.+.               ...+.+.|+||.   
T Consensus        10 ~~kiGivG~Pn~G-KSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1          10 NLKTGIVGMPNVG-KSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             CCEEEEEECSSSS-HHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CcEEEEECCCCCC-HHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            3589999999999 9999999996543  344543332222223443321               246889999873   


Q ss_pred             -ccccccccce---ecCCcEEEEEEeCCC
Q 028595           64 -EDYNRLRPLS---YRGADVFVLAFSLVS   88 (207)
Q Consensus        64 -~~~~~~~~~~---~~~~d~~i~v~d~~~   88 (207)
                       ..-..+...+   ++.+|+++.|.|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence             3333343444   568999999999865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.24  E-value=3.2e-07  Score=66.72  Aligned_cols=86  Identities=23%  Similarity=0.251  Sum_probs=62.9

Q ss_pred             eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH---HHHHh
Q 028595           73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE---LRKQI  149 (207)
Q Consensus        73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~  149 (207)
                      ...|.|.+++|+++.+++--...+..|+-....  .++|.+||.||+|+.++.+           ..+..+.   .....
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL~~~~~-----------~~~~~~~~~~~y~~~   73 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQD-----------TEDTIQAYAEDYRNI   73 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHH-----------HHHHHHHHHHHHHHH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccccccHH-----------HHHHHHHHHHHHhhc
Confidence            457899999999998875444444777776655  4899999999999976543           2233333   33456


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHH
Q 028595          150 GASYYIECSSKTQQNVKAVFDAA  172 (207)
Q Consensus       150 ~~~~~~e~Sa~~~~~i~~~f~~i  172 (207)
                      |+ +.+.+|+.++.|++++...+
T Consensus        74 g~-~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          74 GY-DVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             TC-CEEECCHHHHTTCTTTGGGG
T ss_pred             cc-cceeeecCChhHHHHHHHhh
Confidence            87 89999999999988876544

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.95  E-value=1.4e-06  Score=65.29  Aligned_cols=55  Identities=13%  Similarity=-0.084  Sum_probs=34.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ   63 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~   63 (207)
                      ..+|+++|-+||| ||||+|++.+.+... ..++.|.+- ...+..+.   .+.+.||||-
T Consensus       112 ~~~v~vvG~PNvG-KSsliN~L~~~~~~~-~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         112 AIRALIIGIPNVG-KSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CEEEEEEESTTSS-HHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             ceEEEEEecCccc-hhhhhhhhhccceEE-ECCcccccccceEEECCC---CeEEecCCCc
Confidence            4689999999999 999999999877432 233334333 22333332   3789999995

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=3.1e-05  Score=55.82  Aligned_cols=57  Identities=7%  Similarity=-0.164  Sum_probs=34.3

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCcc--ccCc-----eeeeeeeEEEECCeEEEEEEEeCCCCccc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWD--YIPT-----VFDNFSANVVAEGTTVNLGLWDTAGQEDY   66 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~--~~~t-----~~~~~~~~~~~~~~~~~l~i~D~~G~~~~   66 (207)
                      ..+++|.++|| ||||+|+|.+......  ....     .+.+...-+.+++..   .|+||||-..+
T Consensus        97 t~~~~G~SGVG-KSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVG-KSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSS-HHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTC
T ss_pred             eEEEECCCCCC-HHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCccccc
Confidence            46899999999 9999999986642211  0000     012223344554322   58999997554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.97  E-value=9.1e-05  Score=53.45  Aligned_cols=54  Identities=13%  Similarity=-0.025  Sum_probs=32.0

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCc------c---ccCceeeeeeeEEEECCeEEEEEEEeCCCCccc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIW------D---YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY   66 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~------~---~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~   66 (207)
                      ..+++|.++|| ||||||+|.+.....      .   -..|  .+...-+..+| .   .|+||||-..+
T Consensus        99 ~~vl~G~SGVG-KSSLiN~L~~~~~~~t~~vs~~~~rGrHT--Tt~~~l~~~~g-g---~iiDTPG~r~~  161 (231)
T d1t9ha2          99 TTVFAGQSGVG-KSSLLNAISPELGLRTNEISEHLGRGKHT--TRHVELIHTSG-G---LVADTPGFSSL  161 (231)
T ss_dssp             EEEEEESHHHH-HHHHHHHHCC---------------------CCCCCEEEETT-E---EEESSCSCSSC
T ss_pred             eEEEECCCCcc-HHHHHHhhccHhHhhhcccccccCCCcee--eeeEEEEecCC-C---EEEECCccccc
Confidence            56899999999 999999998764221      0   0111  12222334455 2   37899997654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00042  Score=51.45  Aligned_cols=59  Identities=15%  Similarity=-0.035  Sum_probs=38.7

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccc-----cCceeeeeeeEEEECCeEEEEEEEeCCCCcc
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDY-----IPTVFDNFSANVVAEGTTVNLGLWDTAGQED   65 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~   65 (207)
                      =|.++|...+| ||+|+|.+.+....-..     ..|.|.........++....+.+.||.|...
T Consensus        34 vvsi~G~~~sG-KS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          34 VVAIVGLYRTG-KSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEBTTSS-HHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EEEEECCCCCC-HHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            46778888888 99999999987643222     2334443332222345567789999998643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0072  Score=42.98  Aligned_cols=73  Identities=12%  Similarity=0.069  Sum_probs=40.6

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-CcEEE
Q 028595           77 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYYI  155 (207)
Q Consensus        77 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~  155 (207)
                      .+++|.|.|.............+..+++.  .+   +++.||+|+.+..              +..++..+.++ ..+.+
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~--AD---~ivlNK~Dl~~~~--------------~~~~~~l~~lNP~a~Ii  182 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGY--AD---RILLTKTDVAGEA--------------EKLHERLARINARAPVY  182 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHT--CS---EEEEECTTTCSCT--------------HHHHHHHHHHCSSSCEE
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHh--CC---cccccccccccHH--------------HHHHHHHHHHhCCCeEE
Confidence            47889999988765443332233344432  12   5789999986532              34455556654 23666


Q ss_pred             EeccCCCCCHHHHH
Q 028595          156 ECSSKTQQNVKAVF  169 (207)
Q Consensus       156 e~Sa~~~~~i~~~f  169 (207)
                      +++- -...+..+|
T Consensus       183 ~~~~-g~v~~~~ll  195 (222)
T d1nija1         183 TVTH-GDIDLGLLF  195 (222)
T ss_dssp             ECCS-SCCCGGGGS
T ss_pred             EeeC-CccCHHHhh
Confidence            6552 224554443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.82  E-value=0.00044  Score=47.28  Aligned_cols=21  Identities=14%  Similarity=-0.064  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ||+++|++++| ||||++.+++
T Consensus         2 ki~I~G~~G~G-KSTLl~~i~~   22 (178)
T d1ye8a1           2 KIIITGEPGVG-KTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCcH-HHHHHHHHHh
Confidence            89999999999 9999999875

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.77  E-value=0.00057  Score=46.72  Aligned_cols=23  Identities=13%  Similarity=-0.009  Sum_probs=20.6

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..+|++.|.+++| ||||++.|..
T Consensus         7 ~K~I~i~G~~GsG-KTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSG-KSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSH-HHHHHHHHHH
T ss_pred             ceEEEEECCCCCC-HHHHHHHHHH
Confidence            4689999999999 9999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.71  E-value=0.00065  Score=45.95  Aligned_cols=23  Identities=9%  Similarity=-0.100  Sum_probs=20.3

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-||+++|.+++| |||+.+.|..
T Consensus         4 ~~~I~i~G~pGsG-KTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVG-KTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSS-HHHHHHHHHH
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHH
Confidence            4589999999999 9999999863

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.0015  Score=43.91  Aligned_cols=21  Identities=10%  Similarity=-0.186  Sum_probs=18.7

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      =++++|.+++| ||||++++..
T Consensus         4 vi~itG~~GSG-KTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTG-KTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSC-HHHHHHHHHH
T ss_pred             EEEEEcCCCCC-HHHHHHHHHH
Confidence            37899999999 9999999974

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.11  E-value=0.0032  Score=42.93  Aligned_cols=21  Identities=5%  Similarity=-0.200  Sum_probs=18.9

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      +|+++|++++| |||+...|..
T Consensus         2 ~I~i~G~pGSG-KsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAG-KGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            69999999999 9999988753

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=93.87  E-value=0.004  Score=41.94  Aligned_cols=23  Identities=0%  Similarity=-0.259  Sum_probs=20.4

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..+|++.|.+++| |||+.+.|..
T Consensus         5 ~~~I~i~G~~GsG-KTT~~~~La~   27 (174)
T d1y63a_           5 GINILITGTPGTG-KTSMAEMIAA   27 (174)
T ss_dssp             SCEEEEECSTTSS-HHHHHHHHHH
T ss_pred             CCEEEEEeCCCCC-HHHHHHHHHH
Confidence            3589999999999 9999999864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.87  E-value=0.0034  Score=41.38  Aligned_cols=20  Identities=0%  Similarity=-0.155  Sum_probs=16.7

Q ss_pred             EEEEecccccceeeeeeeccC
Q 028595            7 LACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~   27 (207)
                      |++.|.+++| ||||++.|..
T Consensus         5 Iii~G~pGsG-KTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSG-KSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSS-HHHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHHH
Confidence            5678888888 9999998854

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.82  E-value=0.0043  Score=42.94  Aligned_cols=25  Identities=12%  Similarity=-0.116  Sum_probs=22.0

Q ss_pred             cceeEEEEecccccceeeeeeeccCC
Q 028595            3 LLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         3 ~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .+.+|+++|.+++| |||+...|...
T Consensus         5 r~mrIiliG~PGSG-KtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSG-KGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSS-HHHHHHHHHHH
T ss_pred             cceeEEEECCCCCC-HHHHHHHHHHH
Confidence            46799999999999 99999998753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.75  E-value=0.0042  Score=42.82  Aligned_cols=23  Identities=4%  Similarity=-0.258  Sum_probs=20.4

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -.+|+++|++++| |||+...|..
T Consensus         3 ~~riil~G~pGSG-KsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAG-KGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSS-HHHHHHHHHH
T ss_pred             ccEEEEECCCCCC-HHHHHHHHHH
Confidence            4689999999999 9999998863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.69  E-value=0.0043  Score=42.48  Aligned_cols=22  Identities=0%  Similarity=-0.210  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      +|+++|.+++| |||+...|...
T Consensus         2 ~I~i~G~pGSG-KsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAG-KGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHHH
Confidence            79999999999 99999988744

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.67  E-value=0.0043  Score=42.39  Aligned_cols=22  Identities=5%  Similarity=-0.072  Sum_probs=19.7

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      +|+++|++++| |||+...|...
T Consensus         2 ~I~i~G~pGsG-KsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAG-KGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHHH
Confidence            79999999999 99999998643

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.59  E-value=0.0041  Score=41.86  Aligned_cols=20  Identities=0%  Similarity=-0.286  Sum_probs=17.4

Q ss_pred             EEEEecccccceeeeeeeccC
Q 028595            7 LACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~   27 (207)
                      +.|+|.+++| ||||++++..
T Consensus         4 i~I~G~~gSG-KTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSG-KTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSS-HHHHHHHHHH
T ss_pred             EEEEeCCCCC-HHHHHHHHHH
Confidence            3699999999 9999999863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.49  E-value=0.0062  Score=42.02  Aligned_cols=24  Identities=4%  Similarity=-0.256  Sum_probs=20.1

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..-|+++|++++| |||+..+|...
T Consensus         6 p~iI~i~G~pGSG-KsT~a~~La~~   29 (194)
T d1qf9a_           6 PNVVFVLGGPGSG-KGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSS-HHHHHHHHHHH
T ss_pred             CcEEEEECCCCCC-HHHHHHHHHHH
Confidence            3457899999999 99999998643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.0054  Score=41.78  Aligned_cols=21  Identities=10%  Similarity=-0.189  Sum_probs=19.0

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ||+++|++++| |||+...|..
T Consensus         2 ~I~i~G~pGSG-KsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAG-KGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            79999999999 9999988863

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.31  E-value=0.005  Score=42.86  Aligned_cols=21  Identities=0%  Similarity=-0.217  Sum_probs=18.7

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      =|+++|.+++| ||||.++|..
T Consensus         4 li~l~GlpgsG-KSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARG-KTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            47899999999 9999999873

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=93.28  E-value=0.0051  Score=41.13  Aligned_cols=20  Identities=5%  Similarity=-0.225  Sum_probs=17.5

Q ss_pred             EEEEecccccceeeeeeeccC
Q 028595            7 LACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~   27 (207)
                      |++.|.+++| |||+.+.|..
T Consensus         5 I~i~G~~GsG-KTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVG-KSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSS-HHHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHHH
Confidence            7888999999 9999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.19  E-value=0.0058  Score=41.76  Aligned_cols=22  Identities=0%  Similarity=-0.171  Sum_probs=19.8

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .+|+++|++++| |||+.+.|..
T Consensus         3 mrIvl~G~pGSG-KtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAG-KGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            479999999999 9999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.0071  Score=43.60  Aligned_cols=23  Identities=0%  Similarity=-0.242  Sum_probs=20.4

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -+++++|.+++| ||||++.+.+-
T Consensus        30 e~vaIvG~sGsG-KSTLl~ll~gl   52 (241)
T d2pmka1          30 EVIGIVGRSGSG-KSTLTKLIQRF   52 (241)
T ss_dssp             CEEEEECSTTSS-HHHHHHHHTTS
T ss_pred             CEEEEECCCCCC-HHHHHHHHHhc
Confidence            478999999999 99999998754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.95  E-value=0.0066  Score=42.49  Aligned_cols=22  Identities=5%  Similarity=-0.127  Sum_probs=19.3

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+++-
T Consensus        29 i~~l~G~NGsG-KSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIG-KTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCh-HHHHHHHHhcc
Confidence            46899999999 99999999764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.94  E-value=0.0067  Score=41.69  Aligned_cols=24  Identities=8%  Similarity=-0.249  Sum_probs=20.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..+|+++|++++| |||+...|...
T Consensus         3 Pm~I~i~GppGsG-KsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASG-KGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSS-HHHHHHHHHHH
T ss_pred             CeEEEEECCCCCC-HHHHHHHHHHH
Confidence            4589999999999 99999887633

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.0063  Score=40.20  Aligned_cols=21  Identities=0%  Similarity=-0.262  Sum_probs=19.0

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      +|+++|.+++| |||+.+.|..
T Consensus         4 ~I~l~G~~GsG-KSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAG-KSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSC-HHHHHHHHHH
T ss_pred             eEEEECCCCCC-HHHHHHHHHH
Confidence            79999999999 9999998864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.81  E-value=0.0096  Score=43.28  Aligned_cols=23  Identities=4%  Similarity=-0.198  Sum_probs=20.1

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -+++++|.+++| ||||++.+.+-
T Consensus        45 e~vaivG~sGsG-KSTLl~ll~gl   67 (255)
T d2hyda1          45 ETVAFVGMSGGG-KSTLINLIPRF   67 (255)
T ss_dssp             CEEEEECSTTSS-HHHHHTTTTTS
T ss_pred             CEEEEECCCCCc-HHHHHHHHHhc
Confidence            478999999999 99999988653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.60  E-value=0.0079  Score=43.00  Aligned_cols=22  Identities=0%  Similarity=-0.236  Sum_probs=19.1

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+-
T Consensus        33 ~~~iiG~sGsG-KSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSG-KSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSS-HHHHHHHHTTS
T ss_pred             EEEEECCCCCC-cchhhHhccCC
Confidence            47899999999 99999987654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.0077  Score=43.12  Aligned_cols=22  Identities=5%  Similarity=-0.085  Sum_probs=19.3

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|.+++| ||||++.+.+-
T Consensus        28 i~~liGpsGsG-KSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCG-KSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTS
T ss_pred             EEEEECCCCCh-HHHHHHHHhcC
Confidence            47899999999 99999998755

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.52  E-value=0.0094  Score=43.28  Aligned_cols=23  Identities=4%  Similarity=-0.204  Sum_probs=20.2

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -+++++|.+++| ||||++.+.+-
T Consensus        42 e~iaivG~sGsG-KSTLl~ll~gl   64 (253)
T d3b60a1          42 KTVALVGRSGSG-KSTIASLITRF   64 (253)
T ss_dssp             CEEEEEECTTSS-HHHHHHHHTTT
T ss_pred             CEEEEECCCCCh-HHHHHHHHhcc
Confidence            478999999999 99999998654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=92.51  E-value=0.009  Score=43.07  Aligned_cols=23  Identities=4%  Similarity=-0.291  Sum_probs=20.1

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -+++++|.+++| ||||++.+.+-
T Consensus        29 e~vaivG~sGsG-KSTLl~ll~gl   51 (242)
T d1mv5a_          29 SIIAFAGPSGGG-KSTIFSLLERF   51 (242)
T ss_dssp             EEEEEECCTTSS-HHHHHHHHTTS
T ss_pred             CEEEEECCCCCC-HHHHHHHHHHh
Confidence            478999999999 99999998654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.0092  Score=43.28  Aligned_cols=36  Identities=14%  Similarity=0.015  Sum_probs=26.6

Q ss_pred             eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCe
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGT   51 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~   51 (207)
                      -+++++|.+++| ||||++.+.+-     +.|+.|     .+.++|.
T Consensus        41 e~vaivG~sGsG-KSTLl~li~gl-----~~p~~G-----~I~i~g~   76 (251)
T d1jj7a_          41 EVTALVGPNGSG-KSTVAALLQNL-----YQPTGG-----QLLLDGK   76 (251)
T ss_dssp             CEEEEECSTTSS-HHHHHHHHTTS-----SCCSEE-----EEEETTE
T ss_pred             CEEEEECCCCCc-HHHHHHHHhcc-----cCCCcC-----EEEECCE
Confidence            478999999999 99999998654     335544     4556664

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.42  E-value=0.0073  Score=40.58  Aligned_cols=20  Identities=5%  Similarity=-0.283  Sum_probs=18.1

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      +|+++|.+++| |||+.+.+.
T Consensus         3 ~IvliG~~G~G-KSTig~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSG-KSTIGRRLA   22 (165)
T ss_dssp             SEEEECSTTSS-HHHHHHHHH
T ss_pred             cEEEECCCCCC-HHHHHHHHH
Confidence            68999999999 999988875

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.39  E-value=0.0096  Score=43.93  Aligned_cols=23  Identities=17%  Similarity=0.027  Sum_probs=20.3

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -.++++|..++| ||||++.+.+-
T Consensus        63 e~vaivG~nGsG-KSTLl~~i~Gl   85 (281)
T d1r0wa_          63 EMLAITGSTGSG-KTSLLMLILGE   85 (281)
T ss_dssp             CEEEEEESTTSS-HHHHHHHHHTS
T ss_pred             CEEEEECCCCCh-HHHHHHHHhCC
Confidence            368999999999 99999998764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=0.0085  Score=41.20  Aligned_cols=22  Identities=0%  Similarity=-0.200  Sum_probs=19.5

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -|+++|++++| ||||++++...
T Consensus         3 pIvl~GpsG~G-K~tl~~~L~~~   24 (186)
T d1gkya_           3 PIVISGPSGTG-KSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSS-HHHHHHHHHHH
T ss_pred             eEEEECCCCCC-HHHHHHHHHHh
Confidence            58999999999 99999998644

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.19  E-value=0.0092  Score=42.91  Aligned_cols=23  Identities=13%  Similarity=-0.041  Sum_probs=19.9

Q ss_pred             eEEEEecccccceeeeeeeccCCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      -++++|.+++| ||||++.+.+-.
T Consensus        34 ~~~liGpsGaG-KSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCG-KTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred             EEEEECCCCCh-HHHHHHHHHcCC
Confidence            47899999999 999999987653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.16  E-value=0.0093  Score=42.88  Aligned_cols=36  Identities=17%  Similarity=0.075  Sum_probs=26.3

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTT   52 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~   52 (207)
                      -++++|.+++| ||||++.+.+-.     .|+.|     .+.++|..
T Consensus        26 ~~~liGpnGaG-KSTll~~i~Gl~-----~p~~G-----~I~~~G~~   61 (240)
T d2onka1          26 YCVLLGPTGAG-KSVFLELIAGIV-----KPDRG-----EVRLNGAD   61 (240)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHTSS-----CCSEE-----EEEETTEE
T ss_pred             EEEEECCCCCh-HHHHHHHHHcCC-----CCCce-----EEEECCEE
Confidence            36789999999 999999998653     34433     45667743

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.13  E-value=0.0092  Score=40.35  Aligned_cols=19  Identities=5%  Similarity=-0.284  Sum_probs=16.5

Q ss_pred             EEEEecccccceeeeeeecc
Q 028595            7 LACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~   26 (207)
                      |++.|.+++| |||+++.|.
T Consensus         4 I~i~G~~GsG-KsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVG-STTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSC-HHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHH
Confidence            6777999999 999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.12  E-value=0.0083  Score=45.20  Aligned_cols=25  Identities=12%  Similarity=-0.114  Sum_probs=21.5

Q ss_pred             ceeEEEEecccccceeeeeeeccCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      ..+|++.|+.++| ||||++.++..-
T Consensus       166 ~~nili~G~tgSG-KTT~l~al~~~i  190 (323)
T d1g6oa_         166 GKNVIVCGGTGSG-KTTYIKSIMEFI  190 (323)
T ss_dssp             TCCEEEEESTTSS-HHHHHHHHGGGS
T ss_pred             CCCEEEEeecccc-chHHHHHHhhhc
Confidence            4579999999999 999999998543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.98  E-value=0.0099  Score=40.42  Aligned_cols=22  Identities=0%  Similarity=-0.212  Sum_probs=18.6

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .=|+++|.+++| |||+..++..
T Consensus        15 ~liil~G~pGsG-KST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAG-KSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHTG
T ss_pred             EEEEEECCCCCC-HHHHHHHHHH
Confidence            357899999999 9999998853

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.95  E-value=0.0083  Score=42.85  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTT   52 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~   52 (207)
                      -++++|.+++| ||||++.+.+-.     .|+.|     ++.++|..
T Consensus        28 ~~~liGpsGaG-KSTll~~l~Gl~-----~p~sG-----~I~~~G~~   63 (229)
T d3d31a2          28 YFVILGPTGAG-KTLFLELIAGFH-----VPDSG-----RILLDGKD   63 (229)
T ss_dssp             EEEEECCCTHH-HHHHHHHHHTSS-----CCSEE-----EEEETTEE
T ss_pred             EEEEECCCCCc-HHHHHHHHhcCc-----CCCCC-----EEEEccEe
Confidence            37899999999 999999998653     24433     55566644

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=91.76  E-value=0.012  Score=42.31  Aligned_cols=36  Identities=17%  Similarity=0.059  Sum_probs=26.2

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTT   52 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~   52 (207)
                      -++++|.+++| ||||++.+.+-.     .|+.|     .+.++|+.
T Consensus        33 ~~~iiG~sGsG-KSTLl~~i~Gl~-----~p~sG-----~I~~~g~~   68 (240)
T d3dhwc1          33 IYGVIGASGAG-KSTLIRCVNLLE-----RPTEG-----SVLVDGQE   68 (240)
T ss_dssp             EEEEEESTTSS-HHHHHHHHTTSS-----CCSEE-----EEEETTEE
T ss_pred             EEEEECCCCCC-HHHHHHHHcCCc-----cccCC-----ceEEcCeE
Confidence            46899999999 999999987643     34444     45666643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.011  Score=40.48  Aligned_cols=22  Identities=18%  Similarity=-0.069  Sum_probs=18.7

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -|+++|++++| |+||+++|...
T Consensus         5 ~ivl~Gpsg~G-K~tl~~~L~~~   26 (178)
T d1kgda_           5 TLVLLGAHGVG-RRHIKNTLITK   26 (178)
T ss_dssp             EEEEECCTTSS-HHHHHHHHHHH
T ss_pred             cEEEECCCCCC-HHHHHHHHHHh
Confidence            47888999999 99999998743

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.62  E-value=0.011  Score=40.35  Aligned_cols=21  Identities=14%  Similarity=-0.061  Sum_probs=17.6

Q ss_pred             EEEEecccccceeeeeeeccCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~   28 (207)
                      |+++|++++| ||||++.+...
T Consensus         5 ivl~GpsG~G-K~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVG-KSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSS-HHHHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHHhh
Confidence            6778888999 99999998644

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.012  Score=39.63  Aligned_cols=20  Identities=10%  Similarity=-0.139  Sum_probs=18.0

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      .|.+.|.+++| ||||+..+.
T Consensus         3 ~v~ItG~~GtG-KTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVG-KTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSC-HHHHHHHHH
T ss_pred             EEEEECCCCCc-HHHHHHHHH
Confidence            47899999999 999999986

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.29  E-value=0.015  Score=38.98  Aligned_cols=21  Identities=5%  Similarity=-0.278  Sum_probs=17.1

Q ss_pred             EEEEecccccceeeeeeeccCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~   28 (207)
                      |++.|.+++| |||+.+.+...
T Consensus         7 I~l~G~~GsG-KSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSG-KSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSC-HHHHHHHHHTC
T ss_pred             EEEECCCCCC-HHHHHHHHHHH
Confidence            5677999999 99999888643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=91.28  E-value=0.013  Score=42.07  Aligned_cols=36  Identities=8%  Similarity=-0.052  Sum_probs=26.3

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTT   52 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~   52 (207)
                      -++++|.+++| ||||++.+.+-.     .|+.|     .+.++|..
T Consensus        31 ~~~liG~sGaG-KSTll~~i~gl~-----~p~sG-----~I~~~g~~   66 (240)
T d1g2912          31 FMILLGPSGCG-KTTTLRMIAGLE-----EPSRG-----QIYIGDKL   66 (240)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHTSS-----CCSEE-----EEEETTEE
T ss_pred             EEEEECCCCCh-HHHHHHHHhcCC-----CCCCC-----EEEECCEE
Confidence            47899999999 999999987653     34443     45666644

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.28  E-value=0.013  Score=40.47  Aligned_cols=23  Identities=4%  Similarity=-0.239  Sum_probs=19.5

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .-|+++|++++| |||+...|...
T Consensus         9 ~iI~i~GppGSG-KsT~a~~La~~   31 (196)
T d1ukza_           9 SVIFVLGGPGAG-KGTQCEKLVKD   31 (196)
T ss_dssp             EEEEEECSTTSS-HHHHHHHHHHH
T ss_pred             cEEEEECCCCCC-HHHHHHHHHHH
Confidence            348899999999 99999998653

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=91.23  E-value=0.5  Score=31.55  Aligned_cols=56  Identities=16%  Similarity=0.200  Sum_probs=43.5

Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           86 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        86 ~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      .+|..+++.......+.|..  .+.|+|++|.......              ..+++.+|++..++ |++.+-
T Consensus         2 ~sd~~~l~~~v~~~~~~l~~--AkrPvIi~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~tt~   57 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIAN--RDKVAVLVGSKLRAAG--------------AEEAAVKFTDALGG-AVATMA   57 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT--CSCEEEEECTTTTTTT--------------CHHHHHHHHHHHCC-CEEEEG
T ss_pred             CCChHHHHHHHHHHHHHHHc--CCCEEEEECcCccccc--------------hHHHHHHHHHhhce-eEEecc
Confidence            36777888777777777765  4899999999887533              56889999999999 766543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.015  Score=39.90  Aligned_cols=22  Identities=5%  Similarity=-0.251  Sum_probs=19.4

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|+++|++++| |||+..+|..
T Consensus         2 ~iI~i~GppGSG-KsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAG-KGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSS-HHHHHHHHHH
T ss_pred             cEEEEECCCCCC-HHHHHHHHHH
Confidence            478999999999 9999988864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=91.12  E-value=0.013  Score=39.19  Aligned_cols=20  Identities=0%  Similarity=-0.169  Sum_probs=18.1

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      +|+++|.+++| |||+.+.+.
T Consensus         2 ~I~liG~~GsG-KsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSG-KSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSC-HHHHHHHHH
T ss_pred             cEEEECCCCCC-HHHHHHHHH
Confidence            68999999999 999988875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=91.12  E-value=0.015  Score=41.86  Aligned_cols=22  Identities=9%  Similarity=0.002  Sum_probs=19.3

Q ss_pred             EEEEecccccceeeeeeeccCCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~   29 (207)
                      ++++|..++| ||||++.+.+-.
T Consensus        35 ~~liGpnGaG-KSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAG-KTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSS-HHHHHHHHTTSS
T ss_pred             EEEECCCCCc-HHHHHHHHhCCC
Confidence            6899999999 999999997653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.01  E-value=0.014  Score=40.28  Aligned_cols=21  Identities=0%  Similarity=-0.260  Sum_probs=18.5

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -|+++|++++| ||||+++|..
T Consensus         2 pIvl~GPsGsG-K~tl~~~L~~   22 (190)
T d1lvga_           2 PVVLSGPSGAG-KSTLLKKLFQ   22 (190)
T ss_dssp             CEEEECCTTSS-HHHHHHHHHH
T ss_pred             eEEEECCCCCC-HHHHHHHHHH
Confidence            38999999999 9999998864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.00  E-value=0.014  Score=38.92  Aligned_cols=20  Identities=5%  Similarity=-0.192  Sum_probs=16.6

Q ss_pred             EEEEecccccceeeeeeeccC
Q 028595            7 LACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~   27 (207)
                      ++++|.+++| |||+.+.|..
T Consensus         9 ivl~G~~GsG-KsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSG-KSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSC-HHHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHHH
Confidence            5668888888 9999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=90.93  E-value=0.016  Score=41.65  Aligned_cols=22  Identities=5%  Similarity=-0.185  Sum_probs=19.4

Q ss_pred             EEEEecccccceeeeeeeccCCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~   29 (207)
                      ++++|..++| ||||++.+.+-.
T Consensus        31 ~glvG~nGaG-KSTLl~~l~G~~   52 (238)
T d1vpla_          31 FGLIGPNGAG-KTTTLRIISTLI   52 (238)
T ss_dssp             EEEECCTTSS-HHHHHHHHTTSS
T ss_pred             EEEECCCCCC-HHHHHHHHhcCC
Confidence            5799999999 999999997664

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.93  E-value=0.011  Score=42.55  Aligned_cols=36  Identities=8%  Similarity=0.152  Sum_probs=26.6

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTT   52 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~   52 (207)
                      -++++|.+++| ||||++.+.+-.     .|+.|     .+.++|+.
T Consensus        33 ~~~iiG~sGsG-KSTll~~i~gl~-----~p~~G-----~I~~~g~~   68 (242)
T d1oxxk2          33 RFGILGPSGAG-KTTFMRIIAGLD-----VPSTG-----ELYFDDRL   68 (242)
T ss_dssp             EEEEECSCHHH-HHHHHHHHHTSS-----CCSEE-----EEEETTEE
T ss_pred             EEEEECCCCCc-HHHHHHHHHcCc-----CCCCc-----eEEECCEE
Confidence            57899999999 999999997643     34444     45566654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.86  E-value=0.015  Score=40.79  Aligned_cols=21  Identities=0%  Similarity=-0.186  Sum_probs=18.0

Q ss_pred             EEEEecccccceeeeeeeccCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~   28 (207)
                      |+++|+++|| ||||+++|+..
T Consensus         5 ivi~GPSG~G-K~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAG-KSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSC-HHHHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHHhh
Confidence            6788999999 99999999754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=90.72  E-value=0.016  Score=39.20  Aligned_cols=20  Identities=15%  Similarity=-0.069  Sum_probs=16.6

Q ss_pred             eE-EEEecccccceeeeeeecc
Q 028595            6 KL-ACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki-~iiG~~~~GgKssli~~l~   26 (207)
                      || ++.|.+++| |||+++.|.
T Consensus         2 kiivi~G~~GsG-KTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVG-KSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSC-HHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHH
Confidence            44 567999999 999998885

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.49  E-value=0.02  Score=39.28  Aligned_cols=23  Identities=4%  Similarity=-0.240  Sum_probs=19.5

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .-|++-|..++| |||+++.|...
T Consensus        10 ~~I~ieG~~GsG-KTTl~~~L~~~   32 (197)
T d2vp4a1          10 FTVLIEGNIGSG-KTTYLNHFEKY   32 (197)
T ss_dssp             EEEEEECSTTSC-HHHHHHTTGGG
T ss_pred             eEEEEECCCCCC-HHHHHHHHHHH
Confidence            358899999999 99999998643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.44  E-value=0.019  Score=39.86  Aligned_cols=23  Identities=9%  Similarity=-0.141  Sum_probs=20.1

Q ss_pred             ceeEEEEecccccceeeeeeeccC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..+++++|.++|| ||+++..+..
T Consensus        43 k~n~lLvG~pGVG-KTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVG-KTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSC-HHHHHHHHHH
T ss_pred             CCCeEEEecCCcc-cHHHHHHHHH
Confidence            4589999999999 9999988764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=90.44  E-value=0.017  Score=38.55  Aligned_cols=22  Identities=9%  Similarity=-0.076  Sum_probs=16.8

Q ss_pred             eEEEE-ecccccceeeeeeeccCC
Q 028595            6 KLACL-FATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~ii-G~~~~GgKssli~~l~~~   28 (207)
                      ||++| |.+++| |||+.+.|...
T Consensus         4 kiI~l~G~~GsG-KsTva~~L~~~   26 (178)
T d1qhxa_           4 RMIILNGGSSAG-KSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHHH
Confidence            34444 889998 99999998643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=90.40  E-value=0.012  Score=42.04  Aligned_cols=22  Identities=9%  Similarity=-0.053  Sum_probs=19.1

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -++++|..++| ||||++.+.+-
T Consensus        27 i~~iiG~nGaG-KSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAG-KSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSS-HHHHHHHHHTS
T ss_pred             EEEEECCCCCc-HHHHHHHHhCC
Confidence            36889999999 99999999863

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.39  E-value=0.19  Score=35.44  Aligned_cols=22  Identities=5%  Similarity=-0.156  Sum_probs=19.2

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .+++.|.+++| ||++++.+...
T Consensus        35 ~lll~Gp~G~G-KTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTG-KKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSS-HHHHHHTHHHH
T ss_pred             eEEEECCCCCC-HHHHHHHHHHh
Confidence            58899999999 99999988643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.22  E-value=0.02  Score=41.51  Aligned_cols=22  Identities=5%  Similarity=-0.149  Sum_probs=19.4

Q ss_pred             EEEEecccccceeeeeeeccCCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~~   29 (207)
                      ++++|..++| ||||++.+.+-.
T Consensus        33 ~~liG~nGaG-KSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSG-KSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSS-HHHHHHHHTTSS
T ss_pred             EEEECCCCCc-HHHHHHHHHCCC
Confidence            6899999999 999999997663

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.21  E-value=0.019  Score=39.10  Aligned_cols=20  Identities=10%  Similarity=-0.203  Sum_probs=17.4

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      =|+|-|++++| ||||.++|.
T Consensus        24 iIgI~G~~GSG-KSTla~~L~   43 (198)
T d1rz3a_          24 VLGIDGLSRSG-KTTLANQLS   43 (198)
T ss_dssp             EEEEEECTTSS-HHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHH
Confidence            36788999999 999999986

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.10  E-value=0.075  Score=35.13  Aligned_cols=102  Identities=16%  Similarity=0.147  Sum_probs=58.8

Q ss_pred             CccceeEEEEec-ccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCc---------------
Q 028595            1 MELLAKLACLFA-TQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE---------------   64 (207)
Q Consensus         1 m~~~~ki~iiG~-~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~---------------   64 (207)
                      |....||+++|. .++|  +++...+..+........                +.+.+.|.....               
T Consensus         1 m~~p~KV~IiGA~G~VG--~~~a~~l~~~~l~~~~~~----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIG--YSLLFRIAAGEMLGKDQP----------------VILQLLEIPQAMKALEGVVMELEDCAF   62 (154)
T ss_dssp             CCCCEEEEESSTTSHHH--HHHHHHHHTTTTTCTTCC----------------EEEEEECCGGGHHHHHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCHHH--HHHHHHHHhccccccccc----------------hhHhHhccccchhhHcCchhhhhcccc
Confidence            778889999995 8999  888888887765322111                112222222100               


Q ss_pred             ------cccccccceecCCcEEEEEEeCCCh-----hh-----HHHHHHHHHHHHhhcCC-CCcEEEEeeCCCc
Q 028595           65 ------DYNRLRPLSYRGADVFVLAFSLVSR-----AS-----YENVLKKWIPELQHYSP-GVPVVLVGTKLDL  121 (207)
Q Consensus        65 ------~~~~~~~~~~~~~d~~i~v~d~~~~-----~s-----~~~~~~~~~~~i~~~~~-~~piivv~nK~D~  121 (207)
                            ....-....++++|++++.......     ..     ..- ...+.+.+.++++ +.-++++.|-.|.
T Consensus        63 ~~~~~~~~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i-~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          63 PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKI-FTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             TTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHH-HHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccccccccCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHH-HHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence                  0001112357789999998865532     11     122 2556666777664 5556677777663

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=89.86  E-value=0.02  Score=38.50  Aligned_cols=21  Identities=5%  Similarity=-0.137  Sum_probs=18.4

Q ss_pred             eeEEEEecccccceeeeeeecc
Q 028595            5 AKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~   26 (207)
                      -.|+++|.+++| |||+.+.+.
T Consensus         3 ~~Iil~G~~GsG-KSTia~~LA   23 (170)
T d1e6ca_           3 EPIFMVGARGCG-MTTVGRELA   23 (170)
T ss_dssp             CCEEEESCTTSS-HHHHHHHHH
T ss_pred             CCEEEECCCCCC-HHHHHHHHH
Confidence            358899999999 999999885

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.78  E-value=0.023  Score=41.30  Aligned_cols=36  Identities=6%  Similarity=0.067  Sum_probs=26.1

Q ss_pred             eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeE
Q 028595            6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTT   52 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~   52 (207)
                      -++++|.+++| ||||++.+.+-.     .|+.|     .+.++|+.
T Consensus        30 i~~iiG~sGsG-KSTLl~~i~Gl~-----~p~~G-----~I~~~G~~   65 (258)
T d1b0ua_          30 VISIIGSSGSG-KSTFLRCINFLE-----KPSEG-----AIIVNGQN   65 (258)
T ss_dssp             EEEEECCTTSS-HHHHHHHHTTSS-----CCSEE-----EEEETTEE
T ss_pred             EEEEECCCCCc-HHHHHHHHHcCc-----cCCCC-----CEEECCEE
Confidence            47899999999 999999987542     24433     45566654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.73  E-value=0.023  Score=41.51  Aligned_cols=24  Identities=8%  Similarity=-0.169  Sum_probs=20.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..+++++|.++|| ||++++.+...
T Consensus        39 k~n~lLVG~~GvG-KTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVG-KTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSS-HHHHHHHHHHH
T ss_pred             cCCcEEECCCCCc-HHHHHHHHHHH
Confidence            4579999999999 99999887643

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.52  E-value=0.019  Score=39.49  Aligned_cols=22  Identities=0%  Similarity=-0.256  Sum_probs=18.9

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      -|+++|++++| |||+..+|...
T Consensus        10 iI~l~G~pGSG-KsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSG-KGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSS-HHHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHHH
Confidence            37889999999 99999998653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=89.08  E-value=0.025  Score=37.73  Aligned_cols=20  Identities=0%  Similarity=-0.327  Sum_probs=17.3

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      -|.++|.+++| |||+.+.|.
T Consensus         8 ~I~l~G~~GsG-KTTia~~La   27 (183)
T d1m8pa3           8 TIFLTGYMNSG-KDAIARALQ   27 (183)
T ss_dssp             EEEEECSTTSS-HHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHH
Confidence            46789999999 999988875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.044  Score=38.61  Aligned_cols=24  Identities=8%  Similarity=-0.081  Sum_probs=20.4

Q ss_pred             ceeEEEEecccccceeeeeeeccCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ...|++-|..++| |||+++.|...
T Consensus         2 ~k~I~ieG~dGsG-KST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAG-KSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSS-HHHHHTTTGGG
T ss_pred             CCEEEEECCCCCC-HHHHHHHHHHH
Confidence            4578999999999 99999998653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=0.021  Score=38.88  Aligned_cols=21  Identities=0%  Similarity=-0.224  Sum_probs=17.6

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -|.++|.+++| |||+.+.|..
T Consensus        21 vI~L~G~pGSG-KTTiAk~La~   41 (195)
T d1x6va3          21 TVWLTGLSGAG-KTTVSMALEE   41 (195)
T ss_dssp             EEEEESSCHHH-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            45678999999 9999999853

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.36  E-value=0.11  Score=35.10  Aligned_cols=102  Identities=12%  Similarity=0.051  Sum_probs=60.1

Q ss_pred             ccceeEEEEec-ccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc--------------
Q 028595            2 ELLAKLACLFA-TQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY--------------   66 (207)
Q Consensus         2 ~~~~ki~iiG~-~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------------   66 (207)
                      ....||+++|. .++|  ++|+.+|..+.....                ...+.+.+.|.+.....              
T Consensus        22 k~~~kV~I~GA~G~Ig--~~l~~~La~g~v~g~----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMIS--NHLLFKLASGEVFGQ----------------DQPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHH--HHHHHHHHHTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHH--HHHHHHHHcCcccCC----------------CceEEEEEecCccccchhcchhhhhcccccc
Confidence            35679999995 8888  778888876653211                11244566665442110              


Q ss_pred             -------cccccceecCCcEEEEEEeCCCh--hhHHHH-------HHHHHHHHhhcCC-CCcEEEEeeCCCc
Q 028595           67 -------NRLRPLSYRGADVFVLAFSLVSR--ASYENV-------LKKWIPELQHYSP-GVPVVLVGTKLDL  121 (207)
Q Consensus        67 -------~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~-------~~~~~~~i~~~~~-~~piivv~nK~D~  121 (207)
                             ..-....++++|++|++......  ++..++       ...+.+.+.++++ +.-+++++|=.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                   00112346789999999865532  122111       3556667777765 6667788886663

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.36  E-value=0.026  Score=40.60  Aligned_cols=23  Identities=0%  Similarity=-0.331  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .-|++.|.+++| ||+|++.+.+.
T Consensus        33 ~~ilL~GpPGtG-KT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSG-KTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSC-THHHHHHHHHH
T ss_pred             EEEEEECCCCCC-HHHHHHHHHHH
Confidence            348899999999 99999988643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.65  E-value=0.036  Score=38.26  Aligned_cols=20  Identities=15%  Similarity=-0.164  Sum_probs=17.8

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      -|+|-|..++| |||++..|.
T Consensus         2 lI~ieG~dGsG-KST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAG-KRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSS-HHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHH
Confidence            38899999999 999998875

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=87.57  E-value=0.26  Score=31.90  Aligned_cols=25  Identities=20%  Similarity=0.090  Sum_probs=18.7

Q ss_pred             ceeEEEEecccccceeeeeeeccCCCC
Q 028595            4 LAKLACLFATQVTSFLLYVLSVSGRSS   30 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~~~~~   30 (207)
                      +.||.++|.-++|  +++...+.....
T Consensus         1 r~KI~IIGaG~VG--~~~a~~l~~~~l   25 (142)
T d1y6ja1           1 RSKVAIIGAGFVG--ASAAFTMALRQT   25 (142)
T ss_dssp             CCCEEEECCSHHH--HHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHH--HHHHHHHHhcCC
Confidence            3599999999999  667766665543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=87.25  E-value=0.059  Score=35.91  Aligned_cols=21  Identities=0%  Similarity=-0.376  Sum_probs=18.2

Q ss_pred             EEEEecccccceeeeeeeccCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~   28 (207)
                      |++-|+-++| ||||++.++..
T Consensus        36 i~L~G~LGaG-KTtfvr~~~~~   56 (158)
T d1htwa_          36 VYLNGDLGAG-KTTLTRGMLQG   56 (158)
T ss_dssp             EEEECSTTSS-HHHHHHHHHHH
T ss_pred             EEEecCCCcc-HHHHHHHHHhh
Confidence            6778999999 99999998744

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=87.18  E-value=0.2  Score=32.64  Aligned_cols=27  Identities=15%  Similarity=0.126  Sum_probs=21.5

Q ss_pred             CccceeEEEEecccccceeeeeeeccCCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      |-...||.++|.-++|  +++...+....
T Consensus         2 m~~~~KI~IIGaG~VG--~~~A~~l~~~~   28 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVG--SSYAFAMAQQG   28 (146)
T ss_dssp             BTTBCEEEEECCSHHH--HHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHH--HHHHHHHHhcC
Confidence            5567899999999999  77777776554

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.04  E-value=1.1  Score=30.83  Aligned_cols=66  Identities=11%  Similarity=0.060  Sum_probs=46.0

Q ss_pred             EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEeeCCCccc
Q 028595           52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLRE  123 (207)
Q Consensus        52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-vv~nK~D~~~  123 (207)
                      .+.+.++|+++....  .....+..+|.++++... +..+...+ ..+...+++  .+.|+. +|.|+.+...
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~-~~~~~~~~~--~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNP-EISCLTDT-MKVGIVLKK--AGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECS-CHHHHHHH-HHHHHHHHH--TTCEEEEEEEEEETSCT
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhcccccccc-cceecchh-hHHHHHHhh--hhhhhhhhhhccccccc
Confidence            367889999876432  233446679999999885 46667766 566666665  367765 8999988543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.85  E-value=0.043  Score=38.15  Aligned_cols=21  Identities=5%  Similarity=-0.240  Sum_probs=17.9

Q ss_pred             eeEEEEecccccceeeeeeecc
Q 028595            5 AKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~   26 (207)
                      +-|++-|+.++| ||||.+.|.
T Consensus         3 ~iIgI~G~~gSG-KSTla~~L~   23 (213)
T d1uj2a_           3 FLIGVSGGTASG-KSSVCAKIV   23 (213)
T ss_dssp             EEEEEECSTTSS-HHHHHHHHH
T ss_pred             EEEEEECCCCCC-HHHHHHHHH
Confidence            457889999999 999998874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=86.82  E-value=0.044  Score=39.22  Aligned_cols=20  Identities=5%  Similarity=-0.345  Sum_probs=17.6

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      -+++.|.+++| ||+|++++.
T Consensus        31 ~i~i~G~~G~G-KTsLl~~~~   50 (283)
T d2fnaa2          31 ITLVLGLRRTG-KSSIIKIGI   50 (283)
T ss_dssp             EEEEEESTTSS-HHHHHHHHH
T ss_pred             EEEEEcCCCCc-HHHHHHHHH
Confidence            46788999999 999999876

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=86.43  E-value=0.045  Score=38.73  Aligned_cols=22  Identities=5%  Similarity=-0.105  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..+++.|++++| ||++++.+.+
T Consensus        36 ~~~Ll~GPpG~G-KTtla~~la~   57 (239)
T d1ixsb2          36 EHLLLFGPPGLG-KTTLAHVIAH   57 (239)
T ss_dssp             CCEEEECCTTSC-HHHHHHHHHH
T ss_pred             CeEEEECCCCCC-HHHHHHHHHH
Confidence            358999999999 9999998864

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.60  E-value=0.052  Score=38.67  Aligned_cols=22  Identities=5%  Similarity=0.111  Sum_probs=18.5

Q ss_pred             eeEEEEecccccceeeeeeecc
Q 028595            5 AKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~   26 (207)
                      .++.+|-|+|.||||++++++.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            4678888888888999999975

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.43  E-value=0.44  Score=30.89  Aligned_cols=93  Identities=19%  Similarity=0.280  Sum_probs=55.3

Q ss_pred             eeEEEEec-ccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCC----------ccc-------
Q 028595            5 AKLACLFA-TQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----------EDY-------   66 (207)
Q Consensus         5 ~ki~iiG~-~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~-------   66 (207)
                      .||+++|. -.+|  +++...+..+.+..+                     +.++|+...          ..+       
T Consensus         1 sKv~IiGA~G~VG--~~~A~~l~~~~~~~e---------------------lvLiDi~~~~~~a~Dl~~~~~~~~~~~~~   57 (144)
T d1mlda1           1 AKVAVLGASGGIG--QPLSLLLKNSPLVSR---------------------LTLYDIAHTPGVAADLSHIETRATVKGYL   57 (144)
T ss_dssp             CEEEEETTTSTTH--HHHHHHHHTCTTCSE---------------------EEEEESSSHHHHHHHHTTSSSSCEEEEEE
T ss_pred             CeEEEECCCChHH--HHHHHHHHhCCccce---------------------EEEEeccccchhhHHHhhhhhhcCCCeEE
Confidence            48999994 8999  788888876664321                     233443210          000       


Q ss_pred             -cccccceecCCcEEEEEEeCCC-----hhh-H---HHHHHHHHHHHhhcCCCCcEEEEeeCCC
Q 028595           67 -NRLRPLSYRGADVFVLAFSLVS-----RAS-Y---ENVLKKWIPELQHYSPGVPVVLVGTKLD  120 (207)
Q Consensus        67 -~~~~~~~~~~~d~~i~v~d~~~-----~~s-~---~~~~~~~~~~i~~~~~~~piivv~nK~D  120 (207)
                       ..-....++++|++++..-...     +.. +   ..+...+.+.+.+++++.-++++.|=.|
T Consensus        58 ~~~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD  121 (144)
T d1mlda1          58 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN  121 (144)
T ss_dssp             SGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHH
T ss_pred             cCCChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence             0011234678999998866422     111 1   1123566777777778887888887777

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=85.21  E-value=0.06  Score=36.65  Aligned_cols=23  Identities=0%  Similarity=-0.312  Sum_probs=19.1

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      +=|++.|+.++| |||+.+.|...
T Consensus         4 ~IIgitG~~gSG-Kstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSG-KSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSC-HHHHHHHHHHT
T ss_pred             EEEEEECCCCCC-HHHHHHHHHHC
Confidence            457889999999 99999988643

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.12  E-value=0.061  Score=38.02  Aligned_cols=21  Identities=5%  Similarity=0.123  Sum_probs=17.7

Q ss_pred             eEEEEecccccceeeeeeecc
Q 028595            6 KLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~   26 (207)
                      ++.+|-|+|.||||++++++.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            477888888888999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=84.46  E-value=0.063  Score=37.88  Aligned_cols=21  Identities=0%  Similarity=-0.179  Sum_probs=18.7

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .+++.|++++| ||++++.+..
T Consensus        37 ~~L~~GPpGtG-KT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLG-KTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSS-HHHHHHHHHH
T ss_pred             eEEEECCCCCc-HHHHHHHHHh
Confidence            58999999999 9999998864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=84.06  E-value=0.072  Score=36.86  Aligned_cols=19  Identities=5%  Similarity=-0.368  Sum_probs=17.0

Q ss_pred             EEEEecccccceeeeeeecc
Q 028595            7 LACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~   26 (207)
                      |++-|.+++| |||+++.|.
T Consensus         5 IviEG~dGsG-KsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAG-KTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSC-HHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHH
Confidence            7788999999 999998875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=83.87  E-value=0.062  Score=41.28  Aligned_cols=22  Identities=9%  Similarity=-0.132  Sum_probs=18.2

Q ss_pred             ceeEEEEecccccceeeeeeecc
Q 028595            4 LAKLACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         4 ~~ki~iiG~~~~GgKssli~~l~   26 (207)
                      ..++++||.++|| ||+|+..|.
T Consensus        43 k~n~llvG~~GvG-Ktaiv~~la   64 (387)
T d1qvra2          43 KNNPVLIGEPGVG-KTAIVEGLA   64 (387)
T ss_dssp             CCCCEEEECTTSC-HHHHHHHHH
T ss_pred             CCCCeEECCCCCC-HHHHHHHHH
Confidence            3468999999999 999986554

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=83.17  E-value=0.091  Score=36.46  Aligned_cols=22  Identities=5%  Similarity=-0.207  Sum_probs=18.6

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..|+|-|++++| |||+...|..
T Consensus         4 i~IaIdGp~GsG-KgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSG-KSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSS-HHHHHHHHHH
T ss_pred             eEEEEECCCCCC-HHHHHHHHHH
Confidence            357777999999 9999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.86  E-value=0.081  Score=37.52  Aligned_cols=23  Identities=4%  Similarity=-0.233  Sum_probs=19.8

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      ..+++.|++++| ||++++.+++.
T Consensus        53 ~~lll~GPpG~G-KTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIG-KTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSS-HHHHHHHHHHH
T ss_pred             ceEEEECCCCCC-HHHHHHHHHHH
Confidence            358999999999 99999998754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.66  E-value=0.084  Score=37.56  Aligned_cols=22  Identities=5%  Similarity=-0.152  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-+++.|.+++| ||++++.+..
T Consensus        44 ~~lll~GppGtG-KT~l~~~l~~   65 (276)
T d1fnna2          44 PRATLLGRPGTG-KTVTLRKLWE   65 (276)
T ss_dssp             CEEEEECCTTSS-HHHHHHHHHH
T ss_pred             CceEEECCCCCC-HHHHHHHHHH
Confidence            468999999999 9999998764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.66  E-value=0.34  Score=31.76  Aligned_cols=101  Identities=18%  Similarity=0.186  Sum_probs=55.1

Q ss_pred             cceeEEEEe-cccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc---------------
Q 028595            3 LLAKLACLF-ATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------------   66 (207)
Q Consensus         3 ~~~ki~iiG-~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------------   66 (207)
                      ...||+++| ..++|  ++++..+..+.....                +....+.++|....+..               
T Consensus         2 ~p~KV~IiGA~G~VG--~~la~~l~~~~~~~~----------------~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~   63 (154)
T d5mdha1           2 EPIRVLVTGAAGQIA--YSLLYSIGNGSVFGK----------------DQPIILVLLDITPMMGVLDGVLMELQDCALPL   63 (154)
T ss_dssp             CCEEEEESSTTSHHH--HTTHHHHHTTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT
T ss_pred             CceEEEEECCCCHHH--HHHHHHHHHHHhcCC----------------CCccEEEEecCccchhhhhhhhhhhccccccc
Confidence            356999999 58999  677777776553211                01234556665431100               


Q ss_pred             ------cccccceecCCcEEEEEEeCCCh------hhHH---HHHHHHHHHHhhcCCCCc-EEEEeeCCCc
Q 028595           67 ------NRLRPLSYRGADVFVLAFSLVSR------ASYE---NVLKKWIPELQHYSPGVP-VVLVGTKLDL  121 (207)
Q Consensus        67 ------~~~~~~~~~~~d~~i~v~d~~~~------~s~~---~~~~~~~~~i~~~~~~~p-iivv~nK~D~  121 (207)
                            ..-....++++|++|+.-.....      +-+.   .+...+...+.+++++.. ++++.|-.|.
T Consensus        64 ~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence                  00012346678888887754321      1111   122555666667666554 4566776663

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.50  E-value=0.084  Score=37.03  Aligned_cols=22  Identities=14%  Similarity=-0.040  Sum_probs=19.1

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      ..+++.|++|+| ||++++.+..
T Consensus        46 ~~lll~Gp~G~G-KTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVG-KTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSS-HHHHHHHHHH
T ss_pred             CeEEEECCCCCc-HHHHHHHHHH
Confidence            358899999999 9999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=82.39  E-value=0.11  Score=35.84  Aligned_cols=23  Identities=0%  Similarity=-0.363  Sum_probs=19.2

Q ss_pred             eeEEEEecccccceeeeeeeccCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      +=|++.|+.++| |||+.+.|...
T Consensus         3 ~iIgITG~igSG-KStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSG-KTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSC-HHHHHHHHHTT
T ss_pred             EEEEEECCCCCC-HHHHHHHHHHC
Confidence            447899999999 99999888644

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=82.09  E-value=0.09  Score=37.61  Aligned_cols=22  Identities=0%  Similarity=-0.188  Sum_probs=19.3

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-|++.|++++| ||+|++.+.+
T Consensus        41 ~~vLL~GppGtG-KT~la~alA~   62 (246)
T d1d2na_          41 VSVLLEGPPHSG-KTALAAKIAE   62 (246)
T ss_dssp             EEEEEECSTTSS-HHHHHHHHHH
T ss_pred             eEEEEECcCCCC-HHHHHHHHhh
Confidence            358999999999 9999999863

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.86  E-value=0.48  Score=30.77  Aligned_cols=49  Identities=10%  Similarity=0.118  Sum_probs=30.4

Q ss_pred             ceecCCcEEEEEEeCCCh------h----hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCc
Q 028595           72 LSYRGADVFVLAFSLVSR------A----SYENVLKKWIPELQHYSPGVPVVLVGTKLDL  121 (207)
Q Consensus        72 ~~~~~~d~~i~v~d~~~~------~----s~~~~~~~~~~~i~~~~~~~piivv~nK~D~  121 (207)
                      ..++++|++++..-....      +    .... ...+.+.+.+++|+.-++++-|=.|.
T Consensus        70 ~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i-~~~i~~~i~~~~p~a~~ivvtNPvd~  128 (148)
T d1ldna1          70 DDCRDADLVVICAGANQKPGETRLDLVDKNIAI-FRSIVESVMASGFQGLFLVATNPVDI  128 (148)
T ss_dssp             GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHH-HHHHHHHHHHHTCCSEEEECSSSHHH
T ss_pred             HHhccceeEEEecccccccCcchhHHHHHHHHH-HHHHHHHHHhhCCCceEEEecCccHH
Confidence            456788999987654321      1    1222 25566777778888767777666653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=81.67  E-value=0.12  Score=35.71  Aligned_cols=24  Identities=4%  Similarity=-0.294  Sum_probs=19.5

Q ss_pred             eeEEEEecccccceeeeeeeccCCC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSGRS   29 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~~~   29 (207)
                      +=|++.|+.++| |||+.+.|....
T Consensus         4 ~iIgitG~igSG-KStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSG-KSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSC-HHHHHHHHHHTT
T ss_pred             EEEEEECCCcCC-HHHHHHHHHHCC
Confidence            347799999999 999999876443

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.35  E-value=3.2  Score=27.40  Aligned_cols=55  Identities=13%  Similarity=0.107  Sum_probs=39.6

Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595           87 VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  158 (207)
Q Consensus        87 ~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  158 (207)
                      ++++..++......+.|.+  .+.|++++|.......              ..+++.++++.+++ +++.+-
T Consensus        11 ~~~~~~~~~i~~~~~~l~~--AkrPvii~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~tt~   65 (179)
T d1pvda1          11 NDAESEKEVIDTILALVKD--AKNPVILADACCSRHD--------------VKAETKKLIDLTQF-PAFVTP   65 (179)
T ss_dssp             CCHHHHHHHHHHHHHHHHH--CSSEEEEECGGGTTTS--------------THHHHHHHHHHHCC-CEEECG
T ss_pred             CCCcccHHHHHHHHHHHHh--CCCCEEEEecccchhh--------------hHHHHHHHHHhhCc-eEEecc
Confidence            3455555555666777765  4899999998776432              56889999999998 776643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=81.01  E-value=0.11  Score=38.57  Aligned_cols=22  Identities=9%  Similarity=-0.085  Sum_probs=19.2

Q ss_pred             eeEEEEecccccceeeeeeeccC
Q 028595            5 AKLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         5 ~ki~iiG~~~~GgKssli~~l~~   27 (207)
                      .-++++|++++| ||.|.+.+..
T Consensus        50 ~~iLl~GPpG~G-KT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVG-KTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSS-HHHHHHHHHH
T ss_pred             ceEEEECCCCCC-HHHHHHHHhh
Confidence            458999999999 9999999864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=80.98  E-value=0.11  Score=39.04  Aligned_cols=27  Identities=4%  Similarity=-0.204  Sum_probs=23.0

Q ss_pred             CccceeEEEEecccccceeeeeeeccCC
Q 028595            1 MELLAKLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         1 m~~~~ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      |....+|++=|..++| |||+++.|.+.
T Consensus         3 ~~~~~rI~iEG~iGsG-KSTl~~~L~~~   29 (333)
T d1p6xa_           3 MVTIVRIYLDGVYGIG-KSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEEECSTTSS-HHHHHHHHHSG
T ss_pred             CCceEEEEEECCccCC-HHHHHHHHHHH
Confidence            4556799999999999 99999988653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.95  E-value=0.11  Score=36.06  Aligned_cols=19  Identities=0%  Similarity=-0.290  Sum_probs=15.8

Q ss_pred             EEEEecccccceeeeeeecc
Q 028595            7 LACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~   26 (207)
                      |++-|.+++| |||++..|.
T Consensus         6 I~ieG~dGsG-KsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAG-KSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSS-HHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHH
Confidence            5666999999 999887764

>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=80.91  E-value=2  Score=27.90  Aligned_cols=57  Identities=7%  Similarity=-0.106  Sum_probs=40.9

Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595           87 VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  160 (207)
Q Consensus        87 ~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  160 (207)
                      .+.++++...+.-.+.|..  .+.|++++|.-.....              ..++++++++++++ |++.+..-
T Consensus        10 ~~~~~l~a~~~~a~~~l~~--AkrP~il~G~gv~~~~--------------a~~~l~~l~e~~~i-Pv~tt~~g   66 (161)
T d1ovma1          10 ADSACLKAFRDAAENKLAM--SKRTALLADFLVLRHG--------------LKHALQKWVKEVPM-AHATMLMG   66 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHT--CSCEEEEECHHHHHTT--------------CHHHHHHHHHHSCC-EEEECGGG
T ss_pred             CCHHHHHHHHHHHHHHHHc--CCCcEEEECcCcChhh--------------hHHHHHHHHHhcCc-cEEEcCCc
Confidence            4556666665555666655  4899999997775432              56789999999999 88876443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.89  E-value=0.13  Score=37.75  Aligned_cols=19  Identities=0%  Similarity=-0.176  Sum_probs=13.6

Q ss_pred             EEEEecccccceeeeeeecc
Q 028595            7 LACLFATQVTSFLLYVLSVS   26 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~   26 (207)
                      |+|-|++++| |||+.+.|.
T Consensus         7 IgIaG~SGSG-KTTva~~l~   25 (288)
T d1a7ja_           7 ISVTGSSGAG-TSTVKHTFD   25 (288)
T ss_dssp             EEEESCC----CCTHHHHHH
T ss_pred             EEEECCCCCc-HHHHHHHHH
Confidence            7888999999 999998763

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=80.60  E-value=0.11  Score=36.07  Aligned_cols=21  Identities=0%  Similarity=-0.230  Sum_probs=18.0

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      =|.+.|.+++| ||||.+.|..
T Consensus        26 vIwltGlsGsG-KTTia~~L~~   46 (208)
T d1m7ga_          26 TIWLTGLSASG-KSTLAVELEH   46 (208)
T ss_dssp             EEEEECSTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCC-HHHHHHHHHH
Confidence            47889999999 9999998853

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=80.28  E-value=0.11  Score=35.80  Aligned_cols=21  Identities=0%  Similarity=-0.247  Sum_probs=17.0

Q ss_pred             EEEEecccccceeeeeeeccCC
Q 028595            7 LACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         7 i~iiG~~~~GgKssli~~l~~~   28 (207)
                      |++.|++++| |+|+...|...
T Consensus         6 I~I~GppGSG-KgT~ak~La~~   26 (225)
T d1ckea_           6 ITIDGPSGAG-KGTLCKAMAEA   26 (225)
T ss_dssp             EEEECCTTSS-HHHHHHHHHHH
T ss_pred             EEEECCCCCC-HHHHHHHHHHH
Confidence            4556999999 99999888644

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.25  E-value=0.12  Score=37.70  Aligned_cols=17  Identities=6%  Similarity=-0.197  Sum_probs=14.9

Q ss_pred             EEEecccccceeeeeeec
Q 028595            8 ACLFATQVTSFLLYVLSV   25 (207)
Q Consensus         8 ~iiG~~~~GgKssli~~l   25 (207)
                      +++|..++| ||+++.++
T Consensus        28 vlvG~NgsG-KS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSG-KSNIIDAI   44 (308)
T ss_dssp             EEECCTTTC-STHHHHHH
T ss_pred             EEECCCCCc-HHHHHHHH
Confidence            788998898 99999876

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.10  E-value=0.12  Score=36.26  Aligned_cols=21  Identities=14%  Similarity=-0.002  Sum_probs=18.3

Q ss_pred             eEEEEecccccceeeeeeeccC
Q 028595            6 KLACLFATQVTSFLLYVLSVSG   27 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~   27 (207)
                      -|++=|..++| |||+++.|..
T Consensus         4 ~IviEG~~GsG-KST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVG-KSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSS-HHHHHHHHHH
T ss_pred             EEEEECCCCCc-HHHHHHHHHH
Confidence            47888999999 9999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.08  E-value=0.12  Score=36.21  Aligned_cols=22  Identities=5%  Similarity=-0.047  Sum_probs=19.0

Q ss_pred             eEEEEecccccceeeeeeeccCC
Q 028595            6 KLACLFATQVTSFLLYVLSVSGR   28 (207)
Q Consensus         6 ki~iiG~~~~GgKssli~~l~~~   28 (207)
                      .+++.|++++| ||++++.++..
T Consensus        35 ~lll~Gp~G~G-KTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTG-KTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSS-HHHHHHHHHHH
T ss_pred             eEEEECCCCCC-hHHHHHHHHHH
Confidence            47899999999 99999998743