Citrus Sinensis ID: 028597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHcccccccccEEEEEEEEEEccEEEEEEccccccccccccHHHHHHHcccccccEEEEEccccccccEEEEcccccccccccHHHHHHHccccccccEEEEEEccccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEcccccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHccccccHHcEEEEEEEEEccEEEEEEEEcccHHHcHHHHHHHHHHHcccHHHEEEEEEEcccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHcccccHHHHHcc
Coil and Loop (DISEMBL)
mlyalsapktciscprgppfpqkrqvstrlcvhaslpadnggfkveytpwlivglgnpgikyhgtrhnvGFEMIDHIAQAQRIAMNTIQSKALigigsigevpillakpqaymnfsgesvgplaahyqvpLRHILVIYDEmslmngvlrlqpkgghghhnglKSVMNHLdgcrefprlcigignppgkmDMKAYLLqkfspiereqv
Flexible Loop (DISEMBL)
mlyalsapktciscprgppFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLqkfspiereqv
Low Complexity Region (SEG)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV
Disordered region (IsUnstruct)
*************************VSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLL***********
Disordered Region (DISOPRED)
*******PK***************************************PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFS*******
Disordered Region (DISEMBL)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV
Disordered Region (DISPRO)
****LSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPI*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q9FKN4	246	Chloroplastic group IIB i	yes	no	1.0	0.841	0.708	9e-83
Q9LF14	240	Chloroplastic group IIB i	no	no	0.898	0.775	0.737	7e-76
Q5ZCL8	259	Chloroplastic group IIB i	yes	no	0.855	0.683	0.719	1e-71
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.922	0.746	0.661	2e-71
Q6NLS8	219	Peptidyl-tRNA hydrolase,	no	no	0.777	0.735	0.633	5e-55
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.768	0.552	0.597	8e-55
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	no	no	0.768	0.636	0.578	4e-51
Q10LI6	186	CRS2-like protein, chloro	no	no	0.550	0.612	0.649	5e-37
Q181A2	186	Peptidyl-tRNA hydrolase O	yes	no	0.758	0.844	0.430	9e-36
B8G3X3	188	Peptidyl-tRNA hydrolase O	yes	no	0.739	0.813	0.464	4e-35

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  306 bits (783), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 148/209 (70%), Positives = 171/209 (81%), Gaps = 2/209 (0%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 178
           SVGPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 179 CIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQM 209

Required for the splicing of group IIB introns in chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  283 bits (723), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 158/187 (84%), Gaps = 1/187 (0%)

Query: 21  PQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA 80
           P  R+   R+C   S   D+  FKVEYTPWLIVGLGNPG KYHGTRHNVGFEMID +A+ 
Sbjct: 18  PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARK 76

Query: 81  QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 140
           + + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGESVG LA+HY+VPLRHIL+IYDE
Sbjct: 77  EGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDE 136

Query: 141 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFS 200
           M+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LLQKFS
Sbjct: 137 MALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFS 196

Query: 201 PIEREQV 207
           P+E++Q+
Sbjct: 197 PLEQKQI 203

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  268 bits (686), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/178 (71%), Positives = 149/178 (83%), Gaps = 1/178 (0%)

Query: 30  LCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ 89
           + V AS+P D      EYTPWLI GLGNPG KYHGTRHNVGFEM+D IA+ + I MNTIQ
Sbjct: 46  IAVVASVP-DPAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQ 104

Query: 90  SKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLR 149
           SK+L+GIGSIGEVP+LL KPQ+Y+N+SGE++GPLAA+YQVPLRHILV+YDEMSL NGVLR
Sbjct: 105 SKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLR 164

Query: 150 LQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           LQ KGGHG HNGL++VM  LD  RE PRL IGIG+PPGKMD +A+LLQKFS  ER Q+
Sbjct: 165 LQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQI 222

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  268 bits (684), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 160/204 (78%), Gaps = 13/204 (6%)

Query: 4   ALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYH 63
           +L+AP   I  PR  PF           V +S+P D     VEYTPWLI GLGNPG KY+
Sbjct: 29  SLTAPLHRIRRPR--PF----------TVVSSVP-DPAAGPVEYTPWLIAGLGNPGNKYY 75

Query: 64  GTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPL 123
           GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPL
Sbjct: 76  GTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPL 135

Query: 124 AAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 183
           AA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG
Sbjct: 136 AAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIG 195

Query: 184 NPPGKMDMKAYLLQKFSPIEREQV 207
           +PPGKMD +A+LLQKFS  ER Q+
Sbjct: 196 SPPGKMDPRAFLLQKFSSEERVQI 219

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  214 bits (544), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 126/161 (78%)

Query: 47  YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
           + PWL +GLGNPG KY GTRHN+GFEMID  A++  I MN +  KA++G G + ++P++L
Sbjct: 16  HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 166
           AKPQ YMN SGES GPLAA+Y++PL  +LV++D+M L  GVLRLQ KGGHG HNGLKSVM
Sbjct: 76  AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query: 167 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           NH  G REF RL IGIG PPG+MD KA+LLQKFS   RE++
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERM 176

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  213 bits (541), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 126/159 (79%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
           PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAK
Sbjct: 94  PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           PQ +MN SGESVG + + Y++PL+ +LV+YD++ L  G LRL PKGGHG HNG++S+++ 
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           L G R+FPRL IGIG PPGKMD   ++L++F+  E+E++
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEEL 252

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  200 bits (509), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 125/159 (78%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
           PWL VGLGNPG  Y GTRHNVGFEMID IA+A+ I+++++Q KA++G G IG+ PI+LAK
Sbjct: 55  PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           PQ +MN SGESVG L +++++PL  +LV+YD++ L    LRL PKGGHG HNG++S++NH
Sbjct: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINH 174

Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           L   R+FPRL IGIG PPGKMD   ++L+ F+  E+E++
Sbjct: 175 LKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEEL 213

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1

 Score =  154 bits (388), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 87/114 (76%)

Query: 48  TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLA 107
            PWL VGLGNPG KY  TRHNVGF+MID  AQ+Q I++     KAL G G +  VP+LLA
Sbjct: 59  NPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLA 118

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNG 161
           KPQ YMN SGESVGPLAA+Y++PL  +LV +D+M L  GVLRLQPKGG+G HNG
Sbjct: 119 KPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1

 Score =  150 bits (378), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
           +++VGLGNPG KY  TRHNVGF++ID +A+   I++  I+ KALIG G +G   +LL KP
Sbjct: 2   YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKP 61

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
           Q YMN SGE++  +  +Y+V L +I+V+YD++ L  G +R++ KG  G HNG+KS+   L
Sbjct: 62  QTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL 121

Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            G  +FPR+ +G+  P    D+  ++L +F   E + +
Sbjct: 122 -GSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNI 158

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Clostridium difficile (strain 630) (taxid: 272563)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 100/155 (64%), Gaps = 2/155 (1%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
           WLIVGLGNPG +Y  TRHN+GF  ++ +A+   +     ++K+ I  G I    + L KP
Sbjct: 2   WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKP 61

Query: 110 QAYMNFSGESVGPLAAHYQV-PLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           Q YMN SG++V  L   Y++ P R +LVIYD++ L    LRL+ +G  G HNG++S++  
Sbjct: 62  QTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQ 121

Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIE 203
           L G  EFPRL IGIG PPG+MD   Y+L +F+P E
Sbjct: 122 L-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEE 155

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224079329	244	predicted protein [Populus trichocarpa]	1.0	0.848	0.816	2e-97
255551384	253	peptidyl-tRNA hydrolase, putative [Ricin	1.0	0.818	0.768	9e-91
225452074	246	PREDICTED: chloroplastic group IIB intro	0.995	0.837	0.785	3e-86
449455782	249	PREDICTED: chloroplastic group IIB intro	0.908	0.755	0.815	3e-84
388501072	247	unknown [Lotus japonicus]	1.0	0.838	0.685	3e-81
358248120	244	uncharacterized protein LOC100804132 [Gl	1.0	0.848	0.714	3e-81
42573527	250	chloroplastic group IIB intron splicing	1.0	0.828	0.708	4e-81
15240875	246	chloroplastic group IIB intron splicing	1.0	0.841	0.708	5e-81
297805938	241	predicted protein [Arabidopsis lyrata su	0.985	0.846	0.700	6e-81
26451849	246	putative CRS2 [Arabidopsis thaliana]	1.0	0.841	0.703	1e-80

>gi|224079329|ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|222848787|gb|EEE86334.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/207 (81%), Positives = 186/207 (89%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           MLYA+S P+TCISCPR   F ++  VS RLCV ASLP +  G KVEYTPWLIVGLGNPG 
Sbjct: 1   MLYAVSTPRTCISCPRSSRFHRRNLVSVRLCVRASLPDNANGVKVEYTPWLIVGLGNPGT 60

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV 120
           KYHGTRHNVGFEMID IAQA+ + MNTIQSKALIGIG IGEVPILLAKPQAYMNFSGESV
Sbjct: 61  KYHGTRHNVGFEMIDRIAQAEGVLMNTIQSKALIGIGCIGEVPILLAKPQAYMNFSGESV 120

Query: 121 GPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 180
           GPLAAHY++PLRHIL+IYDEM+L NG+LR+QPKGGHGHHNG+KSVM+HLDGCREFPRLCI
Sbjct: 121 GPLAAHYKIPLRHILLIYDEMNLPNGILRVQPKGGHGHHNGVKSVMDHLDGCREFPRLCI 180

Query: 181 GIGNPPGKMDMKAYLLQKFSPIEREQV 207
           GIGNPPG MDMKA+LLQKFSP EREQ+
Sbjct: 181 GIGNPPGTMDMKAFLLQKFSPTEREQI 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551384|ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus communis] gi|223544111|gb|EEF45636.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]

 Score =  338 bits (867), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 166/216 (76%), Positives = 180/216 (83%), Gaps = 9/216 (4%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPAD-NGGFKVEYTPWLIVGLGNPG 59
           MLYA+S P TCISCPR   F  +   STRL +  SLP + NG  K+EYTPWLIVGLGNPG
Sbjct: 1   MLYAVSTPNTCISCPRNSFFRPRHLASTRLSIRVSLPENGNGVAKIEYTPWLIVGLGNPG 60

Query: 60  IKYHGTRHNV--------GFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA 111
            KYHGTRHNV        GFEMID IA+A+ +AMNTIQSKALIGIG I EVPILL KPQA
Sbjct: 61  NKYHGTRHNVTNASLDLVGFEMIDKIAKAEAVAMNTIQSKALIGIGCIKEVPILLVKPQA 120

Query: 112 YMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDG 171
           YMNFSGESVGPLAAHYQVPLRHIL+IYDEMSL NGV+RLQPKGGHGHHNG+KSVM HLDG
Sbjct: 121 YMNFSGESVGPLAAHYQVPLRHILLIYDEMSLPNGVMRLQPKGGHGHHNGVKSVMEHLDG 180

Query: 172 CREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           CREFPRLCIGIGNPPG MDM+A+LLQKFS  EREQ+
Sbjct: 181 CREFPRLCIGIGNPPGTMDMRAFLLQKFSSTEREQI 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452074|ref|XP_002284030.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic [Vitis vinifera] gi|296087264|emb|CBI33638.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 165/210 (78%), Positives = 179/210 (85%), Gaps = 4/210 (1%)

Query: 1   MLYALSAPKTCISCPRGPP---FPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGN 57
           MLYA+S P T ISC R      F ++R    RLCV ASLP D  G KVEYTPWLIVGLGN
Sbjct: 1   MLYAVSGPSTSISCRRSLDYHGFRRRRLAPARLCVSASLP-DANGIKVEYTPWLIVGLGN 59

Query: 58  PGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 117
           PG KYHGTRHNVGFEMID I+Q + I +NTIQSKALIGIGSIGEVPILLAKPQAYMNFSG
Sbjct: 60  PGNKYHGTRHNVGFEMIDRISQEEGILLNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 119

Query: 118 ESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPR 177
           ESVGPLAA+YQVPLRHILV+YDEM+L NGVLRL P+GGHG+HNGLK+VM HLDGCREFPR
Sbjct: 120 ESVGPLAAYYQVPLRHILVVYDEMNLPNGVLRLAPRGGHGYHNGLKNVMGHLDGCREFPR 179

Query: 178 LCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           LCIGIGNPPG MDMKAYLLQKFS  ER+Q+
Sbjct: 180 LCIGIGNPPGTMDMKAYLLQKFSFEERKQI 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455782|ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucumis sativus] gi|449519774|ref|XP_004166909.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucumis sativus]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/190 (81%), Positives = 167/190 (87%), Gaps = 2/190 (1%)

Query: 20  FPQKR-QVSTRLCVHASLP-ADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHI 77
           FP  +  VSTRL V AS P +D+ G KVEYTPWLIVGLGNPG KYHGTRHNVGFEMID I
Sbjct: 23  FPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSI 82

Query: 78  AQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVI 137
           AQAQ I MNTIQSKALIGIGSIGEVPILLAKPQ YMNF GESVGPLAAHYQ+PLRH+L+ 
Sbjct: 83  AQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVLLT 142

Query: 138 YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQ 197
           YDEM+L NGVLRLQPK GHGHHNG+KSVM HLDG REFPRLCIGIGNPPG MDMKA+LLQ
Sbjct: 143 YDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQ 202

Query: 198 KFSPIEREQV 207
           KFS +ER+Q+
Sbjct: 203 KFSSVERKQI 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501072|gb|AFK38602.1| unknown [Lotus japonicus]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 144/210 (68%), Positives = 172/210 (81%), Gaps = 3/210 (1%)

Query: 1   MLYALSAPKTCISCPRGPPFPQ---KRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGN 57
           ML+A SAP  C+S PR   +P    K    TR  V  S+P    G +VEYTPWL+VGLGN
Sbjct: 1   MLHAASAPSLCLSYPRNLHYPSNLTKHPAKTRFSVRCSVPGTKNGAQVEYTPWLVVGLGN 60

Query: 58  PGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 117
           PG KYHGTRHNVGFE+ID +++A+ I MNTIQSKALIG+GSIG+VP+LLAKPQ YMNFSG
Sbjct: 61  PGSKYHGTRHNVGFEIIDSLSRAEGILMNTIQSKALIGLGSIGDVPVLLAKPQTYMNFSG 120

Query: 118 ESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPR 177
           E+VGPLAA+Y++PLRHI+++YDE SL NGVLRLQPKGGHGHHNG K+VM HLDG R+FPR
Sbjct: 121 EAVGPLAAYYRIPLRHIILVYDETSLPNGVLRLQPKGGHGHHNGSKNVMGHLDGSRDFPR 180

Query: 178 LCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           L IGIGNPPG MD +A+LLQKFS +ER+Q+
Sbjct: 181 LAIGIGNPPGSMDSRAFLLQKFSSVERQQI 210

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248120|ref|NP_001239818.1| uncharacterized protein LOC100804132 [Glycine max] gi|255645504|gb|ACU23247.1| unknown [Glycine max]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 148/207 (71%), Positives = 169/207 (81%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           ML+A+SAP  C+S P    +P      T   V  S+     G KVEYTPWLI+GLGNPG 
Sbjct: 1   MLHAVSAPSFCLSYPGNLHYPPSSVQKTCFSVRCSVSQTKNGAKVEYTPWLIIGLGNPGN 60

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV 120
           KYHGTRHNVGFE+ID +++A+ I MNTIQSKALIGIGSIGEVPILLAKPQ YMNFSGESV
Sbjct: 61  KYHGTRHNVGFEIIDSLSRAEGIQMNTIQSKALIGIGSIGEVPILLAKPQTYMNFSGESV 120

Query: 121 GPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 180
           GPLAA+YQVPLRHIL+++DE SL NGVLRLQPKGGHGHHNGLK+VM HLDGC  FPRL +
Sbjct: 121 GPLAAYYQVPLRHILLVFDETSLPNGVLRLQPKGGHGHHNGLKNVMGHLDGCSAFPRLAV 180

Query: 181 GIGNPPGKMDMKAYLLQKFSPIEREQV 207
           GIGNPPG MD++AYLLQKFS  ER+Q+
Sbjct: 181 GIGNPPGTMDLRAYLLQKFSVEERKQI 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573527|ref|NP_974860.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana] gi|332006907|gb|AED94290.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana]

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/209 (70%), Positives = 171/209 (81%), Gaps = 2/209 (0%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 5   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 64

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 65  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 124

Query: 119 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 178
           SVGPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 125 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 184

Query: 179 CIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+
Sbjct: 185 SIGIGNPPGNMDMKAFLLQKFSPLERKQM 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240875|ref|NP_198645.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana] gi|75309164|sp|Q9FKN4.1|CRS2A_ARATH RecName: Full=Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic; AltName: Full=CRS2-like protein A; AltName: Full=Chloroplastic RNA splicing factor 2-A; Flags: Precursor gi|9758861|dbj|BAB09443.1| unnamed protein product [Arabidopsis thaliana] gi|90962962|gb|ABE02405.1| At5g38290 [Arabidopsis thaliana] gi|332006908|gb|AED94291.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana]

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 148/209 (70%), Positives = 171/209 (81%), Gaps = 2/209 (0%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 178
           SVGPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 179 CIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQM 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805938|ref|XP_002870853.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316689|gb|EFH47112.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 145/207 (70%), Positives = 170/207 (82%), Gaps = 3/207 (1%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           M  + S P T +  P+    P  ++ S+   + ASLP  +   KVEYTPWLIVGLGNPG 
Sbjct: 1   MFCSSSPPITSLLYPKAQKKPNSKRFSS---LRASLPVSDNKLKVEYTPWLIVGLGNPGF 57

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESV 120
           KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQAYMNFSGESV
Sbjct: 58  KYYGTRHNIGFEMIDHIARATEISMNTIQSKALVGIGSVGEVPILLVKPQAYMNFSGESV 117

Query: 121 GPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 180
           GPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL I
Sbjct: 118 GPLAAYYQIPLRHILMIYDDMGLPNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSI 177

Query: 181 GIGNPPGKMDMKAYLLQKFSPIEREQV 207
           GIGNPPG MDMKA+LLQKFSP+ER+Q+
Sbjct: 178 GIGNPPGNMDMKAFLLQKFSPLERKQI 204

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451849|dbj|BAC43017.1| putative CRS2 [Arabidopsis thaliana]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/209 (70%), Positives = 171/209 (81%), Gaps = 2/209 (0%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 178
           SVGPLAA+YQ+PLRHIL+IYD++ L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDLGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 179 CIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQM 209

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	1.0	0.828	0.708	7.1e-77
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.898	0.775	0.737	3.7e-71
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.777	0.735	0.633	8e-53
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.768	0.552	0.597	1.9e-51
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.743	0.823	0.448	8.8e-31
UNIPROTKB|P65865	191	pth "Peptidyl-tRNA hydrolase"	0.763	0.827	0.45	1.1e-30
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.734	0.817	0.437	1.1e-30
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.743	0.814	0.392	3.6e-25
TIGR_CMR|SPO_0811	239	SPO_0811 "peptidyl-tRNA hydrol	0.739	0.640	0.367	3.6e-25
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.729	0.782	0.411	9.7e-25

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 148/209 (70%), Positives = 171/209 (81%)

Query:     1 MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
             M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct:     5 MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 64

Query:    59 GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
             G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct:    65 GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 124

Query:   119 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 178
             SVGPLAA+YQ+PLRHIL+IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct:   125 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 184

Query:   179 CIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
              IGIGNPPG MDMKA+LLQKFSP+ER+Q+
Sbjct:   185 SIGIGNPPGNMDMKAFLLQKFSPLERKQM 213

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 138/187 (73%), Positives = 158/187 (84%)

Query:    21 PQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA 80
             P  R+   R+C   S   D+  FKVEYTPWLIVGLGNPG KYHGTRHNVGFEMID +A+ 
Sbjct:    18 PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARK 76

Query:    81 QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 140
             + + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGESVG LA+HY+VPLRHIL+IYDE
Sbjct:    77 EGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDE 136

Query:   141 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFS 200
             M+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LLQKFS
Sbjct:   137 MALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFS 196

Query:   201 PIEREQV 207
             P+E++Q+
Sbjct:   197 PLEQKQI 203

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 102/161 (63%), Positives = 126/161 (78%)

Query:    47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
             + PWL +GLGNPG KY GTRHN+GFEMID  A++  I MN +  KA++G G + ++P++L
Sbjct:    16 HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query:   107 AKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 166
             AKPQ YMN SGES GPLAA+Y++PL  +LV++D+M L  GVLRLQ KGGHG HNGLKSVM
Sbjct:    76 AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query:   167 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
             NH  G REF RL IGIG PPG+MD KA+LLQKFS   RE++
Sbjct:   136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERM 176

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 95/159 (59%), Positives = 126/159 (79%)

Query:    49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
             PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAK
Sbjct:    94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query:   109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
             PQ +MN SGESVG + + Y++PL+ +LV+YD++ L  G LRL PKGGHG HNG++S+++ 
Sbjct:   154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query:   169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
             L G R+FPRL IGIG PPGKMD   ++L++F+  E+E++
Sbjct:   214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEEL 252

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 70/156 (44%), Positives = 100/156 (64%)

Query:    50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
             ++I GLGNPG +Y  TRHN GF ++D +A+   I +   + K+L+G G I  V +LL KP
Sbjct:     2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61

Query:   110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             Q YMN SG +V    + Y++PL  ++V+YD++ L  G +RL+ KG  G H G+ S+++ L
Sbjct:    62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL 121

Query:   170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE 205
              G  E PRL IGIG P    D+K Y+LQ F+  ERE
Sbjct:   122 -GSEEIPRLKIGIGRP-AVGDVKDYVLQPFTGAERE 155

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P65865 pth "Peptidyl-tRNA hydrolase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 72/160 (45%), Positives = 100/160 (62%)

Query:    49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ-SKALIGIGSIGEVPILLA 107
             P L+VGLGNPG  Y  TRHN+GF + D +A          + S A +  G      ++LA
Sbjct:     4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63

Query:   108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
             KP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct:    64 KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123

Query:   168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
              L G ++F R+ IGIG PPG+ D  A++L+ F+P ER +V
Sbjct:   124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV 162

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 67/153 (43%), Positives = 98/153 (64%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             LIVGLGNPG +Y  TRHN+GF  ID +A+   I++N  + K L G G +    ++L KP 
Sbjct:     3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62

Query:   111 AYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 170
              YMN SGES+ PL  +Y++ +   +V+YD++ +  G LRL+ KG  G HNG+KS ++HL 
Sbjct:    63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL- 121

Query:   171 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIE 203
             G +EF R+ +GI  P   M +  Y+L +F+  E
Sbjct:   122 GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEE 154

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 62/158 (39%), Positives = 91/158 (57%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             LI+GLGNPG +Y G RHNVGF+ +   A+   I+ +     +  G G I +  I+LAKPQ
Sbjct:     3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQ 62

Query:   111 AYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 170
              YMN SG++   L   Y +    I+V+ D++ L  G +RL+  G  G HNG+ S++  + 
Sbjct:    63 TYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI- 121

Query:   171 GCREFPRLCIGIGNPPGK---MDMKAYLLQKFSPIERE 205
             G +EF RL IGIG P  +    ++  ++L  F   ERE
Sbjct:   122 GTKEFIRLKIGIGKPDSRNNGTEVVDHVLGNFGGEERE 159

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_0811 SPO_0811 "peptidyl-tRNA hydrolase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 57/155 (36%), Positives = 90/155 (58%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             L VGLGNPG KY   RHN+GF  +D IA+        ++ +  I  G +G   +LL KP+
Sbjct:     3 LFVGLGNPGAKYARNRHNIGFMALDRIAEDHGFGPWRVKFQGQIAEGRLGREKVLLLKPE 62

Query:   111 AYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 170
              +MN SG+SVG     Y++    I V++DE+ L  G ++++  GGH  HNGL+S+ +H+ 
Sbjct:    63 TFMNRSGQSVGEAMRFYKLDSTDITVLHDELDLAPGKVKVKAGGGHAGHNGLRSIHDHIG 122

Query:   171 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE 205
                 + R+ +GIG+P  K  +  Y+L  F+  + +
Sbjct:   123 AA--YDRVRLGIGHPGRKEAVAGYVLHDFARADED 155

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 63/153 (41%), Positives = 90/153 (58%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             LIVGLGNPG KY  TRHN GF ++D +A A   ++       + G G+     +LL KPQ
Sbjct:     5 LIVGLGNPGPKYLWTRHNAGFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKPQ 64

Query:   111 AYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 170
              YMN SG SV      +++PL   +VI+D++ +  G ++++  GGHG HNGL+S++  L 
Sbjct:    65 TYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQELG 124

Query:   171 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIE 203
             G   F R+ +GIG P    D+  Y+L  FS  E
Sbjct:   125 GAG-FVRVRVGIGRPVHG-DVVNYVLTNFSQDE 155

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FKN4	CRS2A_ARATH	No assigned EC number	0.7081	1.0	0.8414	yes	no
Q5ZCL8	CRS2_ORYSJ	No assigned EC number	0.7191	0.8550	0.6833	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.914
3rd Layer	3.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0038001802	hypothetical protein (244 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.29.190.1	ribose-phosphate diphosphokinase (EC-2.7.6.1) (340 aa)	•						•		0.450
	estExt_Genewise1_v1.C_LG_II0778	hypothetical protein (286 aa)			•	•			•		0.425
	gw1.XVII.983.1	hypothetical protein (611 aa)			•						0.423

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-105
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	9e-76
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	1e-68
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	4e-64
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	2e-60
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	2e-51

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  300 bits (771), Expect = e-105
 Identities = 127/160 (79%), Positives = 144/160 (90%)

Query: 48  TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLA 107
           TPWLI GLGNPG KY GTRHNVGFEM+D IA+A+ I MNTIQ K+L+GIGSIG+VP+LLA
Sbjct: 1   TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLA 60

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KPQ YMN+SGESVGPLAA+Y+VPLRHILVIYD+MSL NGVLRLQPKGGHG HNGL+SV+ 
Sbjct: 61  KPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIE 120

Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  EREQ+
Sbjct: 121 HLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQI 160

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  225 bits (575), Expect = 9e-76
 Identities = 84/157 (53%), Positives = 107/157 (68%), Gaps = 1/157 (0%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
           LIVGLGNPG KY  TRHNVGF ++D +A+   ++    + K L+G G IG   +LL KPQ
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQ 60

Query: 111 AYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 170
            YMN SGE+V  LA  Y++P   ILVI+D++ L  G +RL+  GG G HNGLKS++ HL 
Sbjct: 61  TYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL- 119

Query: 171 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           G  +FPRL IGIG PP KMD+  Y+L KFS  ERE +
Sbjct: 120 GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELL 156

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  207 bits (529), Expect = 1e-68
 Identities = 80/158 (50%), Positives = 104/158 (65%), Gaps = 2/158 (1%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQS-KALIGIGSIGEVPILLAKP 109
           LIVGLGNPG KY  TRHNVGF +ID +A+   +++   +  K LI  G I    ++L KP
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLKP 60

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
           Q YMN SGE+V  +A  Y++P   ILV++D++ L  G LRL+  GG G HNGLKS++ HL
Sbjct: 61  QTYMNLSGEAVRAIARFYKIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIIQHL 120

Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            G  +F RL IGIG PP K D+  Y+L KFSP E E +
Sbjct: 121 -GTNDFKRLRIGIGRPPDKNDVADYVLSKFSPEELELL 157

Length = 183

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  196 bits (500), Expect = 4e-64
 Identities = 74/160 (46%), Positives = 100/160 (62%), Gaps = 3/160 (1%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA-QRIAMNTIQSKALIGIGSIGEVPILLA 107
             LIVGLGNPG +Y  TRHN+GF ++D +A+          + K LI  G I    ++L 
Sbjct: 2   MKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILL 61

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KPQ YMN SG++V  LA  Y++P   ILVI+D++ L  G +RL+  GG G HNGLKS++ 
Sbjct: 62  KPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIA 121

Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           HL G ++F RL IGIG  P K  +  Y+L KFS  E+E +
Sbjct: 122 HL-GTQDFWRLRIGIGR-PDKKKVVDYVLGKFSKEEQELL 159

Length = 189

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  186 bits (475), Expect = 2e-60
 Identities = 75/162 (46%), Positives = 101/162 (62%), Gaps = 4/162 (2%)

Query: 48  TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK--ALIGIGSIGEVPIL 105
              LIVGLGNPG KY  TRHNVGF ++D +A+   ++    + K   L+  G+I    ++
Sbjct: 1   MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLS-FKEEKKFNGLVAKGTIEGEKVI 59

Query: 106 LAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSV 165
           L KP  YMN SG++VG LA+ Y++    ILV++DE+ L  G +RL+  GG G HNGLKS+
Sbjct: 60  LLKPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSI 119

Query: 166 MNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           + HL G   F RL IGIG P    D+  Y+L KFS  ERE +
Sbjct: 120 IAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELL 160

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  163 bits (415), Expect = 2e-51
 Identities = 68/155 (43%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG KY GTRHN GF ++D +A    +++ T +        G +    ++L KP
Sbjct: 3   LIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKP 62

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             YMN SGE+V  LA+ Y++    +LV++DE+ L  G +RL+  GG G HNGLKS+++HL
Sbjct: 63  LTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL 122

Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIER 204
            G   F RL IGIG+P G   +  ++L KF+  E 
Sbjct: 123 -GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSEL 156

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0
cd06070	140	H2MP_like-2 Putative [NiFe] hydrogenase-specific C	82.95

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-69  Score=458.63  Aligned_cols=159  Identities=47%  Similarity=0.760  Sum_probs=152.2

Q ss_pred             cCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCc-cccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 028597           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (207)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~-~~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~  126 (207)
                      +++|||||||||++|+.||||||||++|.||+++++++ +.+++.+.+++..+.+++++|+||+||||+||++|.++++|
T Consensus         1 ~~kLIVGLGNPG~~Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~f   80 (190)
T COG0193           1 MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASF   80 (190)
T ss_pred             CcEEEEECCCCchhhcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHH
Confidence            36899999999999999999999999999999999998 45678899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhc
Q 028597          127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  206 (207)
Q Consensus       127 ~ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~  206 (207)
                      |++.+++++|||||||+|+|++|||.+||++||||||||+++| ||++|+|||||||||..+++|++|||++|+++|++.
T Consensus        81 y~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGlKSi~~~l-Gt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~  159 (190)
T COG0193          81 YKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEEREL  159 (190)
T ss_pred             hCCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccHHHHHHHh-CCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 599999999999999988899999999999999876


Q ss_pred             C
Q 028597          207 V  207 (207)
Q Consensus       207 l  207 (207)
                      |
T Consensus       160 l  160 (190)
T COG0193         160 L  160 (190)
T ss_pred             H
Confidence            4

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=4.1e-69  Score=456.48  Aligned_cols=159  Identities=79%  Similarity=1.318  Sum_probs=151.0

Q ss_pred             CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcC
Q 028597           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ  128 (207)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~k  128 (207)
                      |+|||||||||++|++|||||||+++|+||+++++++++.++.+.+++..+++++++|+||+||||+||++|+++++||+
T Consensus         2 ~~LIvGLGNPG~~Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~yk   81 (191)
T cd02406           2 PWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYK   81 (191)
T ss_pred             cEEEEEcCCCchhhCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHhC
Confidence            58999999999999999999999999999999998876667788889889999999999999999999999999999999


Q ss_pred             CCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597          129 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV  207 (207)
Q Consensus       129 i~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  207 (207)
                      ++++++||||||||||+|++|+|.+||++||||||||+++|++|++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        82 i~~~~ilVihDdldl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l  160 (191)
T cd02406          82 VPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQI  160 (191)
T ss_pred             CCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999965789999999999998767899999999999998754

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=2.7e-68  Score=444.41  Aligned_cols=156  Identities=54%  Similarity=0.922  Sum_probs=149.5

Q ss_pred             EEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCC
Q 028597           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP  130 (207)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ki~  130 (207)
                      |||||||||++|++|||||||+++|+||++++.++++.++.+.++...+.+++++|+||+||||+||++|++++++|+++
T Consensus         1 LIvGLGNPG~~Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~   80 (171)
T cd00462           1 LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIP   80 (171)
T ss_pred             CEEEECCCCcccCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCC
Confidence            69999999999999999999999999999999988776778999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597          131 LRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV  207 (207)
Q Consensus       131 ~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  207 (207)
                      ++++||||||||+|+|++|+|.+||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        81 ~~~ilVihDdldl~~G~vrlk~~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l  156 (171)
T cd00462          81 PEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELL  156 (171)
T ss_pred             hhHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999 5899999999999998778999999999999999764

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=1.6e-67  Score=445.39  Aligned_cols=158  Identities=43%  Similarity=0.703  Sum_probs=149.2

Q ss_pred             CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (207)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~  127 (207)
                      |+|||||||||++|+.|||||||+++|+||++++.++.+ .++.+.++...+++++++|+||+||||+||++|++++++|
T Consensus         1 ~~LIvGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~   80 (188)
T TIGR00447         1 IKLIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFY   80 (188)
T ss_pred             CEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHh
Confidence            589999999999999999999999999999999988763 4567888888899999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV  207 (207)
Q Consensus       128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  207 (207)
                      +++++++||||||||+|+|++|+|.+||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        81 ~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l  159 (188)
T TIGR00447        81 RIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLL  159 (188)
T ss_pred             CCChHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 5899999999999998777899999999999998764

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=3.1e-66  Score=437.75  Aligned_cols=158  Identities=47%  Similarity=0.769  Sum_probs=148.1

Q ss_pred             cCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 028597           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (207)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~  126 (207)
                      +++|||||||||++|++|||||||+++|.||++++..+. ..++.+.++...+++++++|+||+||||+||++|++++++
T Consensus         1 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~   80 (189)
T PRK05426          1 MMKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANF   80 (189)
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence            368999999999999999999999999999999987664 3467789999999889999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhc
Q 028597          127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  206 (207)
Q Consensus       127 ~ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~  206 (207)
                      |++++++++|||||||+|+|++|+|.+||++||||||||+++| ||++|+|||||||||+ ..++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGlkSI~~~l-gt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~  158 (189)
T PRK05426         81 YKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQEL  158 (189)
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 5889999999999997 5679999999999999986


Q ss_pred             C
Q 028597          207 V  207 (207)
Q Consensus       207 l  207 (207)
                      |
T Consensus       159 l  159 (189)
T PRK05426        159 L  159 (189)
T ss_pred             H
Confidence            4

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=9.3e-65  Score=426.01  Aligned_cols=156  Identities=51%  Similarity=0.863  Sum_probs=135.3

Q ss_pred             EEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccc-cceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCC
Q 028597           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ-SKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQV  129 (207)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~-~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ki  129 (207)
                      |||||||||++|++|||||||+++|+||++++.++...+ +.+.++...+.+++++|+||+||||+||.+|++++++|++
T Consensus         1 LivGLGNPG~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i   80 (184)
T PF01195_consen    1 LIVGLGNPGPKYENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKI   80 (184)
T ss_dssp             EEEE---SSTTTTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT-
T ss_pred             CEEEcCCCChhhcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCC
Confidence            799999999999999999999999999999998886654 7788888889999999999999999999999999999999


Q ss_pred             CCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597          130 PLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV  207 (207)
Q Consensus       130 ~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  207 (207)
                      ++++++|||||+|+|+|++|+|.+||++||||||||+++| +|++|+|||||||||+++.++++|||++|+++|++.|
T Consensus        81 ~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l  157 (184)
T PF01195_consen   81 PPENILVIHDDLDLPLGKIRLKKGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELL  157 (184)
T ss_dssp             -GGGEEEEEEETTSSTTEEEEEESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHH
T ss_pred             CcceEEEEEeccCCCCCeEEEccCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999 5899999999999999778999999999999999864

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-54  Score=366.64  Aligned_cols=157  Identities=65%  Similarity=1.114  Sum_probs=150.6

Q ss_pred             CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcC
Q 028597           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ  128 (207)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~k  128 (207)
                      +|+|+||||||++|.+|||||||.++|.||++++++..+.+.++..+.+.+++..+++++|++|||.||++|.+++..|+
T Consensus        39 ~wli~GLGNPg~~y~gTRHnvG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y~  118 (224)
T KOG2255|consen   39 PWLIVGLGNPGSKYVGTRHNVGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALYK  118 (224)
T ss_pred             ceEEEecCCCcccccccchhhHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhhc
Confidence            69999999999999999999999999999999999877766667777788999999999999999999999999999999


Q ss_pred             CCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHh
Q 028597          129 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE  205 (207)
Q Consensus       129 i~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~  205 (207)
                      ++.++++||||||++|+|++++|++||++||||+||++.++++...|+||+||||||++++|+.+|||++|++.|++
T Consensus       119 i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgHNGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~k  195 (224)
T KOG2255|consen  119 IPLRHIVVIHDELELPLGKLRLRPGGSHRGHNGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQK  195 (224)
T ss_pred             chheeEEEEeccccCcCceEEeccCCCccccccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhH
Confidence            99999999999999999999999999999999999999999887899999999999999999999999999999987

>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease

Probab=82.95  E-value=12  Score=29.82  Aligned_cols=84  Identities=21%  Similarity=0.256  Sum_probs=50.1

Q ss_pred             EEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcCCC
Q 028597           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVP  130 (207)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ki~  130 (207)
                      ||+|+|||=.    .-==+|+.++++|++ .++                     -++.       .|.....++.++.  
T Consensus         1 lVlGiGN~l~----~DDg~G~~v~~~L~~-~~v---------------------~vi~-------~g~~~~~ll~~i~--   45 (140)
T cd06070           1 LIIGVGNRLY----GDDGFGSCLAEALEQ-CGA---------------------PVFD-------GGLDGFGLLSHLE--   45 (140)
T ss_pred             CEEEECchhc----ccCcHHHHHHHHHhh-CCC---------------------EEEE-------CCCcHHHHHHHHc--
Confidence            5899999864    333599999999976 111                     1111       1222223344432  


Q ss_pred             CCcEEEEeecCC--CCCceEEEccC---------CCCCCCC-chHHHHHhc
Q 028597          131 LRHILVIYDEMS--LMNGVLRLQPK---------GGHGHHN-GLKSVMNHL  169 (207)
Q Consensus       131 ~~~ilVihDDLd--lp~G~vrlk~g---------Gs~~GHN-GLKSI~~~L  169 (207)
                      ..+.+||.|=++  .++|.++++..         .+...|+ |+.++...+
T Consensus        46 ~~d~viiVDA~~~~~~pG~~~~~~~~~~~~~~~~~~~s~H~~~l~~~l~~~   96 (140)
T cd06070          46 NYDIVIFIDVAVIDEDVGVFKITPEPASVAEQISFETDAHRLGPAHLLLLL   96 (140)
T ss_pred             CCCEEEEEEeecCCCCCeEEEEecCchhccccccCCCCCCcCCHHHHHHHH
Confidence            345566667644  58898887542         2224566 999987665

Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		1e-71
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		9e-71
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		5e-69
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		2e-27
2lgj_A	191	Solution Structure Of Mspth Length = 191		2e-27
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		2e-27
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		2e-26
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		6e-18
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		7e-17
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		3e-16
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		4e-16
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		4e-16
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		6e-16
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		7e-16
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		8e-16

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  265 bits (677), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 144/163 (88%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER Q+
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQI 175

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  262 bits (670), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 122/163 (74%), Positives = 143/163 (87%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNT QSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER Q+
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQI 175

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  256 bits (655), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 119/163 (73%), Positives = 141/163 (86%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           +EYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNT Q K+L+G GSIGEVP+
Sbjct: 1   MEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPV 60
Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 61  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 120
Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER Q+
Sbjct: 121 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQI 163

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER +V
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV 162

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 101/160 (63%), Gaps = 2/160 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A     A     +S A +  G +    ++LA
Sbjct: 4   PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTSVVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KP+ YMN SG  VGPLA  Y VP + I+VI+DE+ +  G +RL+  GG G HNGL+SV +
Sbjct: 64  KPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            L G + F R+ IG+G PPG+ D  A++L+ F+  ER +V
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEV 162

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER +V
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV 162

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A     A     +S A +  G +    ++LA
Sbjct: 4   PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTTVVLA 63
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KP+  MN SG  VGPLA  Y VP + I+VI+DE+ +  G +RL+  GG G HNGL+SV +
Sbjct: 64  KPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            L G + F R+ IG+G PPG+ D  A++L+ F+  ER +V
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEV 162

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN GF  ++ +A    I + N  +   + G G+I    + L  P
Sbjct: 6   LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             YMN SG+SV P +  YQ+    IL+ +DE+ +  GV+RL+  GGHG HNGL+ ++ H+
Sbjct: 66  MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI 125
Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQK 198
                F RL IGIG+P  K  +  ++L K
Sbjct: 126 --GPNFHRLRIGIGHPGSKERVSGHVLGK 152

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 4/159 (2%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQA--QRIAMNTIQSKALIGIGSIGEVPILLAK 108
           +I+GLGN G +Y  TRHNVG   I  IAQ   Q  + N   +  L  + SI    ++L  
Sbjct: 25  MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKV-SIDYNNVVLVF 83
Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           P  YMN SG +V  +A  Y++    ILV++DE+ + +G +RL+  GGHG HNGL+S+  H
Sbjct: 84  PTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQH 143
Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           L G  ++ RL IGIG+P  K  +  Y+L   S  +++ +
Sbjct: 144 L-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDI 181

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 8/139 (5%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK----ALIGIGSIGEVPILL 106
           LIVGLGNPG +Y  TRHN GF ++D +A   R A  T++ +           +    + L
Sbjct: 25  LIVGLGNPGAEYTATRHNAGFWLVDQLA---REAGATLRDERRFHGFYAKARLYGEEVHL 81
Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 166
            +PQ YMN SG+SV  LA  +++    ILV +DE+ L  G ++L+  GG G HNGLK + 
Sbjct: 82  LEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDIS 141
Query: 167 NHLDGCREFPRLCIGIGNP 185
            HL   +++ RL IGIG+P
Sbjct: 142 AHL-SSQQYWRLRIGIGHP 159

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN G   ++ +A AQ +++   +    L+G  S     + L  P
Sbjct: 6   LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 65
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             YMN SG+SV  LA  +++    ILV +DE+ +  GV +L+  GGHG HNGL+ ++  L
Sbjct: 66  TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 125
Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE 205
                F RL +GIG+P     +  Y+L +    E+E
Sbjct: 126 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 161

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN G   ++ +A AQ +++   +    L+G  S     + L  P
Sbjct: 12  LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 71
Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             YMN SG+SV  LA  +++    ILV +DE+ +  GV +L+  GGHG HNGL+ ++  L
Sbjct: 72  TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 131
Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE 205
                F RL +GIG+P     +  Y+L +    E+E
Sbjct: 132 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 167

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 5/151 (3%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 61
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
            P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 62  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 121
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQK 198
            L     F RL IGIG+P  K  +  ++L K
Sbjct: 122 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGK 152

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 5/151 (3%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 8   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 65
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
            P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 66  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 125
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQK 198
            L     F RL IGIG+P  K  +  ++L K
Sbjct: 126 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGK 156

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 5/151 (3%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 25  LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 82
Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
            P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 83  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 142
Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQK 198
            L     F RL IGIG+P  K  +  ++L K
Sbjct: 143 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGK 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	6e-90
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	2e-79
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	2e-76
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	1e-73
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	4e-69
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	2e-67
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	1e-66

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  261 bits (670), Expect = 6e-90
 Identities = 123/163 (75%), Positives = 144/163 (88%)

Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPV 72

Query: 105 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKS 164
           L+ KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132

Query: 165 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER Q+
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQI 175

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  234 bits (599), Expect = 2e-79
 Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 2/160 (1%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
           KP+ YMN SG  +GPLA  Y V   +I+VI+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123

Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER +V
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV 162

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  227 bits (580), Expect = 2e-76
 Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 1/160 (0%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
             LIVGLGNPG +Y  TRHN G   ++ +A AQ +++    +   L+G  S     + L 
Sbjct: 4   VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLL 63

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
            P  YMN SG+SV  LA  +++    ILV +DE+ +  GV +L+  GGHG HNGL+ ++ 
Sbjct: 64  IPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIA 123

Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            L     F RL +GIG+P     +  Y+L +    E+E +
Sbjct: 124 QLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELL 163

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  220 bits (562), Expect = 1e-73
 Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 1/159 (0%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGL NPG +Y  TRHN G   +D +A+  R  +    +        ++G   + L  
Sbjct: 3   KLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           P  +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++ 
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISK 122

Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           L     F RL IGIG+P  K  +  ++L K    E++ +
Sbjct: 123 LGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI 161

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  208 bits (533), Expect = 4e-69
 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 2/160 (1%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
             +I+GLGN G +Y  TRHNVG   I  IAQ    + ++  +    +   SI    ++L 
Sbjct: 23  IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLV 82

Query: 108 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 167
            P  YMN SG +V  +A  Y++    ILV++DE+ + +G +RL+  GGHG HNGL+S+  
Sbjct: 83  FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQ 142

Query: 168 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           HL G  ++ RL IGIG+P  K  +  Y+L   S  +++ +
Sbjct: 143 HL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDI 181

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  203 bits (520), Expect = 2e-67
 Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 3/159 (1%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGLGNPG +Y  TRHN GF  ++ +A    I +    +   + G G+I    + L  
Sbjct: 5   SLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           P  YMN SG+SV P +  YQ+    IL+ +DE+ +  GV+RL+  GGHG HNGL+ ++ H
Sbjct: 65  PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPH 124

Query: 169 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
           +     F RL IGIG+P  K  +  ++L K    E+  +
Sbjct: 125 IG--PNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLM 161

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  203 bits (518), Expect = 1e-66
 Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGLGNPG +Y  TRHN GF ++D +A+     +    +         +    + L +
Sbjct: 24  KLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLE 83

Query: 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 168
           PQ YMN SG+SV  LA  +++    ILV +DE+ L  G ++L+  GG G HNGLK +  H
Sbjct: 84  PQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAH 143

Query: 169 LDGCREFPRLCIGIGNPP----------GKMDMKAYLLQKFSPIEREQV 207
           L   +++ RL IGIG+P            K D+  ++L+     E++ +
Sbjct: 144 L-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVI 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=3e-70  Score=462.64  Aligned_cols=159  Identities=35%  Similarity=0.580  Sum_probs=150.1

Q ss_pred             CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (207)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~  127 (207)
                      |+|||||||||++|++||||||||++|+||++++++++ +.++++.++++.+++++++|+||+||||+||++|+++++||
T Consensus         2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y   81 (193)
T 2pth_A            2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence            58999999999999999999999999999999999987 55688999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV  207 (207)
Q Consensus       128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  207 (207)
                      +|++++|||||||||||+|++|+|.+||++||||||||+++||+|++|+|||||||||..+.++++|||++|+++|++.|
T Consensus        82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  161 (193)
T 2pth_A           82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999932899999999999996555799999999999999864

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=3.9e-70  Score=461.44  Aligned_cols=158  Identities=46%  Similarity=0.805  Sum_probs=150.1

Q ss_pred             CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (207)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~  127 (207)
                      |+|||||||||++|++|||||||+++|+||+++++++.+ .++++.++++.+++++++|+||+||||+||++|+++++||
T Consensus         4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~y   83 (191)
T 2z2i_A            4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFY   83 (191)
T ss_dssp             CEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHT
T ss_pred             cEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHh
Confidence            589999999999999999999999999999999998865 4588999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV  207 (207)
Q Consensus       128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  207 (207)
                      +++++++||||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        84 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  162 (191)
T 2z2i_A           84 SVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV  162 (191)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 5899999999999996556799999999999999864

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=1e-69  Score=463.80  Aligned_cols=158  Identities=38%  Similarity=0.610  Sum_probs=151.7

Q ss_pred             CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (207)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~  127 (207)
                      |+|||||||||++|++|||||||+++|+||+++++++++. ++.+.++++.+++++++|+||+||||+||++|+++++||
T Consensus        23 ~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y  102 (207)
T 3nea_A           23 IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFY  102 (207)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHHh
Confidence            6899999999999999999999999999999999998765 688999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV  207 (207)
Q Consensus       128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  207 (207)
                      +++++++||||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus       103 ki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~l  181 (207)
T 3nea_A          103 KIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDI  181 (207)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred             CCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 5899999999999998878899999999999999764

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=1.4e-69  Score=462.44  Aligned_cols=162  Identities=75%  Similarity=1.263  Sum_probs=152.6

Q ss_pred             cCcCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHH
Q 028597           46 EYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAA  125 (207)
Q Consensus        46 ~~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~  125 (207)
                      ++.++|||||||||++|++|||||||+++|+||+++++++++.++.+.++++.+++++++|+||+||||+||++|+++++
T Consensus        14 ~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~   93 (205)
T 1ryb_A           14 EYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAA   93 (205)
T ss_dssp             -CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHH
Confidence            44579999999999999999999999999999999999988777899999999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHh
Q 028597          126 HYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE  205 (207)
Q Consensus       126 ~~ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~  205 (207)
                      ||++++++|||||||||||+|++|+|.+||++||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|++
T Consensus        94 ~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  173 (205)
T 1ryb_A           94 YYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERV  173 (205)
T ss_dssp             HTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHH
T ss_pred             HhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999338999999999999976567999999999999997


Q ss_pred             cC
Q 028597          206 QV  207 (207)
Q Consensus       206 ~l  207 (207)
                      .|
T Consensus       174 ~l  175 (205)
T 1ryb_A          174 QI  175 (205)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=6.9e-69  Score=456.34  Aligned_cols=157  Identities=39%  Similarity=0.631  Sum_probs=149.7

Q ss_pred             eEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcC
Q 028597           50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ  128 (207)
Q Consensus        50 ~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~k  128 (207)
                      -|||||||||++|+.|||||||+++|+||+++++++.+ .++.+.++++.+++++++|+||+||||+||++|+++++||+
T Consensus        11 ~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yk   90 (199)
T 4fyj_A           11 QLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFR   90 (199)
T ss_dssp             CEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHhC
Confidence            59999999999999999999999999999999998764 46789999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCC-CccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597          129 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCR-EFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV  207 (207)
Q Consensus       129 i~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~-~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  207 (207)
                      ++++++||||||||||+|++|+|.+||++||||||||+++| ||+ +|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        91 i~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  169 (199)
T 4fyj_A           91 IAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELL  169 (199)
T ss_dssp             CCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred             CCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999 577 9999999999998888999999999999999764

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=7.7e-69  Score=462.45  Aligned_cols=160  Identities=37%  Similarity=0.597  Sum_probs=148.4

Q ss_pred             CcCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHH
Q 028597           47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAA  125 (207)
Q Consensus        47 ~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~  125 (207)
                      ||++|||||||||++|+.|||||||+++|+||+++++++.+. ++.+.+++..+++++++|+||+||||+||++|+++++
T Consensus        21 m~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~  100 (222)
T 3v2i_A           21 SMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAH  100 (222)
T ss_dssp             -CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             ceEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHH
Confidence            457899999999999999999999999999999999987754 5789999999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCC----------CCcccccccc
Q 028597          126 HYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP----------PGKMDMKAYL  195 (207)
Q Consensus       126 ~~ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP----------~~~~~v~~yV  195 (207)
                      ||++++++|||||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||          +.+.++++||
T Consensus       101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yV  179 (222)
T 3v2i_A          101 FFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFV  179 (222)
T ss_dssp             HHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHT
T ss_pred             HhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHh
Confidence            99999999999999999999999999999999999999999999 589999999999999          5556899999


Q ss_pred             cCCCChHHHhcC
Q 028597          196 LQKFSPIEREQV  207 (207)
Q Consensus       196 Ls~Fs~~E~~~l  207 (207)
                      |++|+++|++.|
T Consensus       180 L~~fs~~E~~~l  191 (222)
T 3v2i_A          180 LKPPRKEEQDVI  191 (222)
T ss_dssp             TSCCCHHHHHHH
T ss_pred             ccCCCHHHHHHH
Confidence            999999999764

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=4e-68  Score=449.67  Aligned_cols=157  Identities=40%  Similarity=0.670  Sum_probs=149.5

Q ss_pred             CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (207)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~  127 (207)
                      ++|||||||||++|++|||||||+++|+||++++++++. .++.+.+++..+++++++|+||+||||+||++|+++++||
T Consensus         4 ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~   83 (193)
T 4hoy_A            4 ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFY   83 (193)
T ss_dssp             CCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHT
T ss_pred             ceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHc
Confidence            469999999999999999999999999999999998865 4678999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV  207 (207)
Q Consensus       128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  207 (207)
                      +++++++||||||||||+|++|+|.+||++||||||||+++| || ||+|||||||||+++.++++|||++|+++|++.|
T Consensus        84 ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  161 (193)
T 4hoy_A           84 QIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLM  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHH
T ss_pred             CCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 45 7999999999999888999999999999999753

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=2.4e-70  Score=463.75  Aligned_cols=158  Identities=39%  Similarity=0.619  Sum_probs=148.8

Q ss_pred             CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (207)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~  127 (207)
                      |+|||||||||++|++|||||||+++|+||+++++++. +.++.+.++++.+++++++|+||+||||+||++|+++++||
T Consensus         4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fy   83 (194)
T 4fno_A            4 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF   83 (194)
Confidence            57999999999999999999999999999999998876 34688888888888999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCC-CCccEEEEccCCCCCcccccccccCCCChHHHhc
Q 028597          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGC-REFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  206 (207)
Q Consensus       128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt-~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~  206 (207)
                      +|+++++||||||||||+|++|+|.+||++||||||||+++| || ++|+|||||||||..+.++++|||++|+++|++.
T Consensus        84 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  162 (194)
T 4fno_A           84 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL  162 (194)
Confidence            999999999999999999999999999999999999999999 58 8999999999999645679999999999999986


Q ss_pred             C
Q 028597          207 V  207 (207)
Q Consensus       207 l  207 (207)
                      |
T Consensus       163 l  163 (194)
T 4fno_A          163 L  163 (194)
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	1e-51
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	2e-44

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  163 bits (413), Expect = 1e-51
 Identities = 121/161 (75%), Positives = 142/161 (88%)

Query: 47  YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
           YTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+
Sbjct: 1   YTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLV 60

Query: 107 AKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 166
            KPQ+YMN+SGE++GPLAA+YQVPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+
Sbjct: 61  VKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVI 120

Query: 167 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
            HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER Q+
Sbjct: 121 EHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQI 161

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  144 bits (365), Expect = 2e-44
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 1/158 (0%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKP 109
           LIVGL NPG +Y  TRHN G   +D +A+  R  +    +        ++G   + L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 110 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 169
             +MN SG++V  +A+ +++    ILV +DE+ L  GV + +  GGHG HNGLK +++ L
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL 123

Query: 170 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207
                F RL IGIG+P  K  +  ++L K    E++ +
Sbjct: 124 GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0
d1cfza_	162	Hydrogenase maturating endopeptidase HybD {Escheri	84.97

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=5.7e-68  Score=445.79  Aligned_cols=161  Identities=75%  Similarity=1.263  Sum_probs=154.2

Q ss_pred             CcCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHH
Q 028597           47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAH  126 (207)
Q Consensus        47 ~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~  126 (207)
                      +|+||||||||||++|++|||||||++||+||++++.+++..++.+.++...+++++++|+||+||||+||++|++++++
T Consensus         1 ~~p~LIvGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~   80 (191)
T d1ryba_           1 YTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAY   80 (191)
T ss_dssp             CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred             CCceEEEEcCCCCccccCCccHHHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHh
Confidence            57899999999999999999999999999999999999887788899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhc
Q 028597          127 YQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  206 (207)
Q Consensus       127 ~ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~  206 (207)
                      |+++++++||||||||||+|++|+|.+||++||||||||+++|+++++|+|||||||||+++.++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~  160 (191)
T d1ryba_          81 YQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQ  160 (191)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHH
T ss_pred             hccCcceeEEEEcccccccCceeeccCCCCCcCcchhhHHHHhCCchheEEEeecCCCCcccCCcccccCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999997678999999999999888899999999999999976


Q ss_pred             C
Q 028597          207 V  207 (207)
Q Consensus       207 l  207 (207)
                      |
T Consensus       161 l  161 (191)
T d1ryba_         161 I  161 (191)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6e-66  Score=433.73  Aligned_cols=159  Identities=35%  Similarity=0.580  Sum_probs=149.6

Q ss_pred             CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY  127 (207)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~  127 (207)
                      |+|||||||||++|++|||||||++||.||++++.+++. .++.+.++...+.+++++|+||+||||+||++|++++++|
T Consensus         2 mklivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   81 (193)
T d2ptha_           2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             EEEEEECCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHHHh
Confidence            679999999999999999999999999999999998764 3567888888899999999999999999999999999999


Q ss_pred             CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597          128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV  207 (207)
Q Consensus       128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l  207 (207)
                      ++++++++|||||||+|+|++|+|.+||++||||||||+++||.+++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        82 ~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~~l  161 (193)
T d2ptha_          82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHH
T ss_pred             CCCHHHeEEEecchhccCCCcccccCCCccccccHHHHHHHhhcccchheeeeeccCCcccCCccceeCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999954458999999999998877899999999999999763

>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: HybD-like
family: Hydrogenase maturating endopeptidase HybD
domain: Hydrogenase maturating endopeptidase HybD
species: Escherichia coli [TaxId: 562]

Probab=84.97  E-value=0.39  Score=36.24  Aligned_cols=32  Identities=22%  Similarity=0.457  Sum_probs=25.7

Q ss_pred             cCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCC
Q 028597           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRI   83 (207)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~   83 (207)
                      |+.+|+|+|||=.    .-==+|..++++|++++..
T Consensus         1 MrilVlGiGN~l~----gDDgvG~~v~~~L~~~~~~   32 (162)
T d1cfza_           1 MRILVLGVGNILL----TDEAIGVRIVEALEQRYIL   32 (162)
T ss_dssp             CCEEEEEESCTTB----GGGGHHHHHHHHHHHHEEC
T ss_pred             CeEEEEEECCccc----ccCcHHHHHHHHHHHhcCC
Confidence            4679999999854    4446999999999998653