Citrus Sinensis ID: 028606

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
MQDHFDLQASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDCLRILAEQSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYFYFHYVCRLTLSGSL
ccccccccEEEEEcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHccccccEEEEEcccHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccc
ccccccEEEEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHccccccEEEEEEccccHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHEccccccccHEEEEEEEccccccccccccc
mqdhfdlqastyvggdfdALKVTKSILKSIatdqpvddndlnLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCrplvescapgskdiiTARFTDVATMVATtstypleclsdedCLRILAEqslgttdfsndtepilgpsdrsshrmdieednniedhQAQERRNWTVSLVIKLLYIIISSRGLFNFYFYFHYVCRLTLSGSL
mqdhfdlqastyvggdfdALKVTKSILKSiatdqpvddndLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDCLRILAEQslgttdfsndtepilgpsdrsshRMDIEEDnniedhqaqerrNWTVSLVIKLLYIIISSRGLFNFYFYFHYVCRLTLSGSL
MQDHFDLQASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDCLRILAEQSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYFYFHYVCRLTLSGSL
********ASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDCLRILAEQSL***************************************RNWTVSLVIKLLYIIISSRGLFNFYFYFHYVCRLTL****
MQDHFDLQASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDCLRILAEQSLGTTDFSNDTEPILGPSDRSSHRMDI*EDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYFYFHYVCRLT*S***
MQDHFDLQASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDCLRILAEQSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYFYFHYVCRLTLSGSL
**DHFDLQASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDCLRILAEQSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYFYFHYVCRLT*****
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MQDHFDLQASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDCLRILAEQSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYFYFHYVCRLTLSGSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query206 2.2.26 [Sep-21-2011]
Q9LRR4 1054 Putative disease resistan yes no 0.626 0.122 0.338 1e-15
Q7XBQ9 970 Disease resistance protei N/A no 0.669 0.142 0.316 3e-14
Q7XA40 992 Putative disease resistan N/A no 0.631 0.131 0.328 5e-14
Q9LRR5 1424 Putative disease resistan no no 0.694 0.100 0.289 2e-12
Q7XA39 988 Putative disease resistan N/A no 0.660 0.137 0.304 1e-11
Q7XA42 979 Putative disease resistan N/A no 0.616 0.129 0.310 3e-11
Q9T048 985 Disease resistance protei no no 0.529 0.110 0.315 5e-05
>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 Back     alignment and function desciption
 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 77/133 (57%), Gaps = 4/133 (3%)

Query: 1   MQDHFDLQASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGK--KFL 58
           ++ +F  +   +V  +FD  K+TK + +S+ T +P +  DL++LQ KLK++ +G    FL
Sbjct: 222 VRSYFGTKVWAHVSEEFDVFKITKKVYESV-TSRPCEFTDLDVLQVKLKERLTGTGLPFL 280

Query: 59  LFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDC 118
           L LDDLWN N+  W  L +P + + A GS+ ++T R   VA+++     + L+ LSD DC
Sbjct: 281 LVLDDLWNENFADWDLLRQPFIHA-AQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDC 339

Query: 119 LRILAEQSLGTTD 131
             +  +   G  +
Sbjct: 340 WSLFMKTVFGNQE 352
Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 Back     alignment and function description
>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 Back     alignment and function description
>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 Back     alignment and function description
>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query206
315666952162 resistance protein-like protein [Citrus 0.776 0.987 0.968 9e-86
315666950167 resistance protein-like protein [Citrus 0.776 0.958 0.968 1e-85
315666948164 resistance protein-like protein [Citrus 0.776 0.975 0.962 4e-85
315666954161 resistance protein-like protein [Citrus 0.771 0.987 0.968 5e-85
315666956144 resistance protein-like protein [Citrus 0.679 0.972 0.964 3e-73
53680926172 resistance protein-like protein, partial 0.650 0.779 0.585 1e-34
53680938172 resistance protein-like protein, partial 0.650 0.779 0.570 1e-33
315666972155 resistance protein-like protein [Citrus 0.645 0.858 0.574 1e-32
315666970156 resistance protein-like protein [Citrus 0.645 0.852 0.574 1e-32
53680898171 resistance protein-like protein, partial 0.631 0.760 0.568 5e-31
>gi|315666952|gb|ADU55711.1| resistance protein-like protein [Citrus reticulata x Citrus trifoliata] Back     alignment and taxonomy information
 Score =  322 bits (824), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 155/160 (96%), Positives = 156/160 (97%)

Query: 1   MQDHFDLQASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLF 60
           MQDHFDLQASTYVGGDFD LKV KSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLF
Sbjct: 3   MQDHFDLQASTYVGGDFDVLKVMKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLF 62

Query: 61  LDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDCLR 120
           LDDLWNVNYDLWSYLCRPLVESCAPGSKD+IT RFTDVATMVATTSTYPLECLSDEDCL 
Sbjct: 63  LDDLWNVNYDLWSYLCRPLVESCAPGSKDVITTRFTDVATMVATTSTYPLECLSDEDCLH 122

Query: 121 ILAEQSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIED 160
           ILAEQSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIED
Sbjct: 123 ILAEQSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIED 162

Source: Citrus reticulata x Citrus trifoliata

Species: Citrus reticulata x Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|315666950|gb|ADU55710.1| resistance protein-like protein [Citrus reticulata x Citrus trifoliata] Back     alignment and taxonomy information
>gi|315666948|gb|ADU55709.1| resistance protein-like protein [Citrus reticulata] Back     alignment and taxonomy information
>gi|315666954|gb|ADU55712.1| resistance protein-like protein [Citrus reticulata x Citrus trifoliata] Back     alignment and taxonomy information
>gi|315666956|gb|ADU55713.1| resistance protein-like protein [Citrus reticulata x Citrus trifoliata] Back     alignment and taxonomy information
>gi|53680926|gb|AAU89650.1| resistance protein-like protein, partial [Citrus trifoliata] Back     alignment and taxonomy information
>gi|53680938|gb|AAU89656.1| resistance protein-like protein, partial [Citrus trifoliata] Back     alignment and taxonomy information
>gi|315666972|gb|ADU55717.1| resistance protein-like protein [Citrus reticulata x Citrus trifoliata] Back     alignment and taxonomy information
>gi|315666970|gb|ADU55716.1| resistance protein-like protein [Citrus trifoliata] Back     alignment and taxonomy information
>gi|53680898|gb|AAU89636.1| resistance protein-like protein, partial [Citrus trifoliata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query206
TAIR|locus:2091672 1054 AT3G14470 [Arabidopsis thalian 0.626 0.122 0.338 7.4e-16
TAIR|locus:2091662 1424 AT3G14460 [Arabidopsis thalian 0.684 0.099 0.293 6.5e-13
UNIPROTKB|O48647 1802 O48647 "XA1" [Oryza sativa (ta 0.660 0.075 0.301 1.4e-12
TAIR|locus:2136447 985 AT4G27190 [Arabidopsis thalian 0.572 0.119 0.292 2.1e-05
TAIR|locus:2078012 852 ZAR1 "HOPZ-ACTIVATED RESISTANC 0.616 0.149 0.248 0.00065
TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 211 (79.3 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 45/133 (33%), Positives = 77/133 (57%)

Query:     1 MQDHFDLQASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGK--KFL 58
             ++ +F  +   +V  +FD  K+TK + +S+ T +P +  DL++LQ KLK++ +G    FL
Sbjct:   222 VRSYFGTKVWAHVSEEFDVFKITKKVYESV-TSRPCEFTDLDVLQVKLKERLTGTGLPFL 280

Query:    59 LFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDC 118
             L LDDLWN N+  W  L +P + + A GS+ ++T R   VA+++     + L+ LSD DC
Sbjct:   281 LVLDDLWNENFADWDLLRQPFIHA-AQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDC 339

Query:   119 LRILAEQSLGTTD 131
               +  +   G  +
Sbjct:   340 WSLFMKTVFGNQE 352
GO:0005576 "extracellular region" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0043531 "ADP binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030997001
SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (1178 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 1e-14
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information 
 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 2   QDHFDLQASTYVGGDFDALKVTKSILKSI-ATDQPVDDNDLNLLQGKLKKQFSGKKFLLF 60
             HFD  A   V   +   ++ K IL+ +   D    + + + L  K+K+    K+FLL 
Sbjct: 46  GGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLV 105

Query: 61  LDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTST-YPLECLSDEDCL 119
           LDD+W    + W  +  P       GS+ I+T R   VA  +  TS  + +E L  E+  
Sbjct: 106 LDDVW--EKNDWDKIGVPFP-DGENGSRVIVTTRSESVAGRMGGTSKPHEVESLEPEESW 162

Query: 120 RIL 122
            + 
Sbjct: 163 ELF 165

Length = 285

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 206
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 100.0
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 99.96
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.9
PF05729166 NACHT: NACHT domain 97.37
PRK06893229 DNA replication initiation factor; Validated 97.21
PRK04841 903 transcriptional regulator MalT; Provisional 97.03
PRK00411394 cdc6 cell division control protein 6; Reviewed 96.19
PF13173128 AAA_14: AAA domain 96.1
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 96.09
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 95.93
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 95.31
TIGR02928365 orc1/cdc6 family replication initiation protein. M 94.76
PRK09087226 hypothetical protein; Validated 93.58
PRK05564313 DNA polymerase III subunit delta'; Validated 92.86
cd01128249 rho_factor Transcription termination factor rho is 92.59
PRK08084235 DNA replication initiation factor; Provisional 91.64
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 91.46
PRK05642234 DNA replication initiation factor; Validated 90.73
TIGR02903 615 spore_lon_C ATP-dependent protease, Lon family. Me 90.23
TIGR00767415 rho transcription termination factor Rho. Members 90.2
PRK08727233 hypothetical protein; Validated 89.87
PRK06620214 hypothetical protein; Validated 89.58
PRK09376416 rho transcription termination factor Rho; Provisio 89.36
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 88.12
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 88.07
PRK13342 413 recombination factor protein RarA; Reviewed 87.13
PRK07471365 DNA polymerase III subunit delta'; Validated 86.98
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 86.57
PF02463220 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: 86.08
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 85.86
PRK14087450 dnaA chromosomal replication initiation protein; P 85.24
PRK14086617 dnaA chromosomal replication initiation protein; P 84.75
PTZ00112 1164 origin recognition complex 1 protein; Provisional 84.67
COG1373 398 Predicted ATPase (AAA+ superfamily) [General funct 83.91
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 83.81
COG2256 436 MGS1 ATPase related to the helicase subunit of the 82.12
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 81.14
PRK12402337 replication factor C small subunit 2; Reviewed 81.13
PRK13341 725 recombination factor protein RarA/unknown domain f 80.68
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 80.4
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 80.22
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 80.02
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-37  Score=272.11  Aligned_cols=192  Identities=24%  Similarity=0.349  Sum_probs=166.2

Q ss_pred             CcCCCCeeEEEEeCCCCCHHHHHHHHHHHhhcCCCC--CCCCHHHHHHHHHHHcCCCcEEEEEcCCCCCChhhHHHHhhh
Q 028606            1 MQDHFDLQASTYVGGDFDALKVTKSILKSIATDQPV--DDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRP   78 (206)
Q Consensus         1 v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~   78 (206)
                      |+++||.++||+||++|+...++++|++.+ +....  .....++++..|.+.|++|||||||||||  +...|+.|+.+
T Consensus       206 v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l-~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW--~~~dw~~I~~~  282 (889)
T KOG4658|consen  206 VGNHFDGVIWVVVSKEFTTRKIQQTILERL-GLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIW--EEVDWDKIGVP  282 (889)
T ss_pred             hcccCceEEEEEEcccccHHhHHHHHHHHh-ccCCcccchhhHHHHHHHHHHHhccCceEEEEeccc--ccccHHhcCCC
Confidence            578999999999999999999999999998 54332  23344789999999999999999999999  88999999999


Q ss_pred             ccCCCCCCcEEEEeCCChHHHHh-hCCCCceeCCCCCHHHHHHHHHHhhcCCCCCCC-C-ch----------------hh
Q 028606           79 LVESCAPGSKDIITARFTDVATM-VATTSTYPLECLSDEDCLRILAEQSLGTTDFSN-D-TE----------------PI  139 (206)
Q Consensus        79 l~~~~~~gs~IivTTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~af~~~~~~~-~-~~----------------~~  139 (206)
                      +| ....||+|++|||+++||.. |++...++++.|+.++||.||++.+|....... . +.                .+
T Consensus       283 ~p-~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~v  361 (889)
T KOG4658|consen  283 FP-SRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNV  361 (889)
T ss_pred             CC-CccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHH
Confidence            99 77889999999999999999 888889999999999999999999976633222 1 11                28


Q ss_pred             hcchhhcCCCCCHHHHHHHHhhchhhcc------cchHHHHHHHHhcCCCchhHHHHHhHhhhhhh
Q 028606          140 LGPSDRSSHRMDIEEDNNIEDHQAQERR------NWTVSLVIKLLYIIISSRGLFNFYFYFHYVCR  199 (206)
Q Consensus       140 lg~~l~~~~~~~~~~w~~~~~~~~~~~~------~~~i~~~L~~sy~~Lp~~~lk~CflY~~~~~r  199 (206)
                      +|+.|  ..+.+.++|+++.+.+.+...      .+.+.++|++||++||++ +|.||+||+.||.
T Consensus       362 iG~~m--a~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPE  424 (889)
T KOG4658|consen  362 LGGLL--ACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPE  424 (889)
T ss_pred             HHHHh--cCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCc
Confidence            88889  777789999999998876622      248899999999999977 9999999999997

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 3e-17
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
 Score = 78.3 bits (193), Expect = 3e-17
 Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 20/133 (15%)

Query: 1   MQDHFDLQAS-TYVGGDFDA--LKVTKSILKSI---ATDQPVDDNDLNLLQGKLKKQFSG 54
           ++  F        VG    +  L   +++   +    +       ++   + +L+     
Sbjct: 174 LEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 233

Query: 55  K--KFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTS--TYPL 110
           K  + LL LDD+W+                     + ++T R   V   V          
Sbjct: 234 KHPRSLLILDDVWDSWV--LKAF--------DSQCQILLTTRDKSVTDSVMGPKYVVPVE 283

Query: 111 ECLSDEDCLRILA 123
             L  E  L IL+
Sbjct: 284 SSLGKEKGLEILS 296
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query206
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 99.94
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 99.88
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.82
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 99.71
1w5s_A 412 Origin recognition complex subunit 2 ORC2; replica 97.8
1fnn_A 389 CDC6P, cell division control protein 6; ORC1, AAA 96.98
2v1u_A387 Cell division control protein 6 homolog; DNA repli 96.96
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 96.86
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 96.51
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 96.5
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 96.32
2chg_A226 Replication factor C small subunit; DNA-binding pr 95.6
2fna_A357 Conserved hypothetical protein; structural genomic 95.52
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 95.24
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 90.57
2chq_A319 Replication factor C small subunit; DNA-binding pr 89.21
1jr3_A 373 DNA polymerase III subunit gamma; processivity, pr 88.63
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 87.2
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 85.05
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 83.83
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 81.16
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
Probab=99.94  E-value=1.3e-27  Score=204.62  Aligned_cols=184  Identities=11%  Similarity=0.096  Sum_probs=137.4

Q ss_pred             CcCCCCeeEEEEeCCCC--CHHHHHHHHHHHhhcCCC-------CCCCCHHHHHHHHHHHcCCC-cEEEEEcCCCCCChh
Q 028606            1 MQDHFDLQASTYVGGDF--DALKVTKSILKSIATDQP-------VDDNDLNLLQGKLKKQFSGK-KFLLFLDDLWNVNYD   70 (206)
Q Consensus         1 v~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~-------~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~   70 (206)
                      ++++|++++||++++.+  ++.+++++|+.++ +...       .+..+.+.+...+++.|+++ ||||||||||  +..
T Consensus       180 ~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l-~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~--~~~  256 (549)
T 2a5y_B          180 IGINYDSIVWLKDSGTAPKSTFDLFTDILLML-KSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV--QEE  256 (549)
T ss_dssp             BTTTBSEEEEEECCCCSTTHHHHHHHHHHHHH-TTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC--CHH
T ss_pred             HhccCCcEEEEEECCCCCCCHHHHHHHHHHHH-hcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC--Cch
Confidence            46789999999999986  8999999999999 5431       12335677889999999996 9999999999  766


Q ss_pred             hHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCC-CCceeCCCCCHHHHHHHHHHhhcCCCCCCCCch------------
Q 028606           71 LWSYLCRPLVESCAPGSKDIITARFTDVATMVAT-TSTYPLECLSDEDCLRILAEQSLGTTDFSNDTE------------  137 (206)
Q Consensus        71 ~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~af~~~~~~~~~~------------  137 (206)
                      .+ .    ++  ..+||+||||||++.++..++. ..+|++++|+.++||+||.+.+|+........+            
T Consensus       257 ~~-~----~~--~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl  329 (549)
T 2a5y_B          257 TI-R----WA--QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN  329 (549)
T ss_dssp             HH-H----HH--HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred             hh-c----cc--ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence            54 1    11  1159999999999999998863 357999999999999999999987643111111            


Q ss_pred             ----hhhcchhhcCCCCCHHHHHHHHhhchhhcccchHHHHHHHHhcCCCchhHHHHHh-----------Hhhhhhh
Q 028606          138 ----PILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYF-----------YFHYVCR  199 (206)
Q Consensus       138 ----~~lg~~l~~~~~~~~~~w~~~~~~~~~~~~~~~i~~~L~~sy~~Lp~~~lk~Cfl-----------Y~~~~~r  199 (206)
                          .++|+.+  +.+ + ++|...+....+....+.+..+|.+||++||++ +|.||+           ||++||.
T Consensus       330 PLAl~~~g~~l--~~~-~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~  401 (549)
T 2a5y_B          330 PATLMMFFKSC--EPK-T-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPP  401 (549)
T ss_dssp             HHHHHHHHTTC--CSS-S-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCT
T ss_pred             hHHHHHHHHHh--ccc-h-HHHHHHhHHHhhcccHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCC
Confidence                1455555  222 2 334343433333323457888999999999999 999999           9999986
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 206
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 6e-11
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.9 bits (139), Expect = 6e-11
 Identities = 13/132 (9%), Positives = 29/132 (21%), Gaps = 19/132 (14%)

Query: 2   QDHFDLQASTYVGGDFDALKVTKSILKSIA---------TDQPVDDNDLNLLQGKLKKQF 52
             ++D        G              +                   + L +       
Sbjct: 73  GINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALI 132

Query: 53  SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV-ATTSTYPLE 111
                L   DD+       W         +     + ++T R  +++     T     + 
Sbjct: 133 DRPNTLFVFDDVVQEETIRW---------AQELRLRCLVTTRDVEISNAASQTCEFIEVT 183

Query: 112 CLSDEDCLRILA 123
            L  ++C   L 
Sbjct: 184 SLEIDECYDFLE 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query206
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 99.94
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 91.34
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 87.47
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=7.2e-28  Score=187.73  Aligned_cols=179  Identities=9%  Similarity=0.044  Sum_probs=132.9

Q ss_pred             cCCCCeeEEEEeCCCCCHHHHHHHHHHHhh--cCCC-------CCCCCHHHHHHHHHHHcCCCcEEEEEcCCCCCChhhH
Q 028606            2 QDHFDLQASTYVGGDFDALKVTKSILKSIA--TDQP-------VDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLW   72 (206)
Q Consensus         2 ~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~--~~~~-------~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~   72 (206)
                      +.+|++++||++++.++...+...+...+.  +...       ....+.......+.+.+.++|+|+||||||  +...|
T Consensus        73 ~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~--~~~~~  150 (277)
T d2a5yb3          73 GINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV--QEETI  150 (277)
T ss_dssp             TTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC--CHHHH
T ss_pred             hhcCceEEEEEecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhh--HHhhh
Confidence            457999999999999987777666544321  2111       112233444567888999999999999999  88888


Q ss_pred             HHHhhhccCCCCCCcEEEEeCCChHHHHhhCCC-CceeCCCCCHHHHHHHHHHhhcCCCCCCCCch--------------
Q 028606           73 SYLCRPLVESCAPGSKDIITARFTDVATMVATT-STYPLECLSDEDCLRILAEQSLGTTDFSNDTE--------------  137 (206)
Q Consensus        73 ~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~-~~~~l~~L~~~~~~~Lf~~~af~~~~~~~~~~--------------  137 (206)
                      +.+.       ..|||||||||++.++..+... +.|++++|+.++||+||..++|........++              
T Consensus       151 ~~~~-------~~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPL  223 (277)
T d2a5yb3         151 RWAQ-------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPA  223 (277)
T ss_dssp             HHHH-------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHH
T ss_pred             hhhc-------ccCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHH
Confidence            7543       2489999999999999887654 68999999999999999999976544322211              


Q ss_pred             --hhhcchhhcCCCCCHHHHHHHHhhchhhcccchHHHHHHHHhcCCCchhHHHHHhHh
Q 028606          138 --PILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYFYF  194 (206)
Q Consensus       138 --~~lg~~l~~~~~~~~~~w~~~~~~~~~~~~~~~i~~~L~~sy~~Lp~~~lk~CflY~  194 (206)
                        .++|+.+.   ..+.++|....+.+.... .+.+..+|.+||++||++ +|.||-|+
T Consensus       224 Al~~ig~~l~---~k~~~~~~~~~~~L~~~~-~~~v~~il~~sY~~L~~~-lk~c~~~l  277 (277)
T d2a5yb3         224 TLMMFFKSCE---PKTFEKMAQLNNKLESRG-LVGVECITPYSYKSLAMA-LQRCVEVL  277 (277)
T ss_dssp             HHHHHHTTCC---SSSHHHHHHHHHHHHHHC-SSTTCCCSSSSSSSHHHH-HHHHHHTS
T ss_pred             HHHHHHHHhc---cCCHHHHHHHHHHHhcCc-HHHHHHHHHHHHhcccHH-HHHHHHhC
Confidence              15666663   346889988888774332 357888999999999999 99999874
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure