Citrus Sinensis ID: 028608

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MAVRGAAAIACTTRGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGKFMHYKEFSH
Secondary Structure (PSIPRED)
cccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHccccccEEEEEcccccccHHHHccccHHHHHcccEEEEcccEEEEcHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEHHEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEccccccHcccccccccccEEEEEEccccHHHHHHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHHcEcccccEEccHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MAVRGAAAIACttrgrnpfvssanhyffmrfhhspsrsfqrftshpnhrsgyRNQIRAIQgatadpltskkeydkdpspenwkikmlydgdcplcMREVNMLKErnkqygtikfvdissdeysieenqgldyktvmGSIHAIvsdgtvvtDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGKfmhykefsh
Flexible Loop (DISEMBL)
MAVRGAAAiacttrgrnpfVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAIQGatadpltskkeydkdpspenwkikmLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGKFmhykefsh
Low Complexity Region (SEG)
MAVRGAAAIACTTRGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGKFMHYKEFSH
Disordered region (IsUnstruct)
******AAIACTTRGRNPFVSSANHYFFMRFH*************************************************WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGKFMHYK****
Disordered Region (DISOPRED)
***********************NHYFFMRFHH***************************************************KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGKFMHY*****
Disordered Region (DISEMBL)
MAVRGAAAIACTTRGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGKFMHYKEFSH
Disordered Region (DISPRO)
*AVRGAAAIACTTRGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAIQGATADPLTS********SPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGKFMHY*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVRGAAAIACTTRGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGKFMHYKEFSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q8W485	214	Uncharacterized protein A	yes	no	0.898	0.864	0.615	2e-64

>sp|Q8W485|Y5010_ARATH Uncharacterized protein At5g50100, mitochondrial OS=Arabidopsis thaliana GN=At5g50100 PE=1 SV=1

 Score =  244 bits (624), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/200 (61%), Positives = 149/200 (74%), Gaps = 15/200 (7%)

Query: 1   MAVRGAAAIACTT---RGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIR 57
           MA RGA A A +T     RNP + S + +F   F+H       R        +G++ Q+R
Sbjct: 1   MATRGAVAAAASTIWKHRRNPSLRSLSRHFNPNFNH-------RIIP-----TGFKYQVR 48

Query: 58  AIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI 117
           AIQG + DP+ +  +  ++P P+NWKIKMLYDGDCPLCMREVNML ERN+++GTIKFVDI
Sbjct: 49  AIQGTSTDPVITPLKNREEPKPQNWKIKMLYDGDCPLCMREVNMLMERNEKHGTIKFVDI 108

Query: 118 SSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIA 177
           SS++YS E+NQGLDYKTVMG IHAI SDG VV  VEAFRRLYEEVGLGWVY ITK+EPI 
Sbjct: 109 SSNDYSPEDNQGLDYKTVMGQIHAIQSDGNVVKGVEAFRRLYEEVGLGWVYTITKFEPIG 168

Query: 178 KIADFVYSVWAKYRLQITGK 197
           K+AD VY VWAKYRLQ+TG+
Sbjct: 169 KLADVVYDVWAKYRLQVTGR 188

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
255587476	222	conserved hypothetical protein [Ricinus	0.941	0.873	0.65	2e-67
363807536	227	uncharacterized protein LOC100814016 [Gl	0.888	0.806	0.675	2e-65
225457126	215	PREDICTED: uncharacterized protein At5g5	0.883	0.846	0.675	2e-65
224135751	167	predicted protein [Populus trichocarpa]	0.684	0.844	0.804	7e-64
297792301	213	hypothetical protein ARALYDRAFT_495066 [	0.898	0.868	0.628	3e-63
363807530	208	uncharacterized protein LOC100785087 [Gl	0.873	0.865	0.649	8e-63
18423105	214	putative thiol-disulfide oxidoreductase	0.898	0.864	0.615	1e-62
18146782	221	PBng143 [Vigna radiata]	0.927	0.864	0.636	1e-62
388518351	216	unknown [Lotus japonicus]	0.781	0.745	0.680	4e-59
449440704	223	PREDICTED: uncharacterized protein At5g5	0.951	0.878	0.580	4e-59

>gi|255587476|ref|XP_002534285.1| conserved hypothetical protein [Ricinus communis] gi|223525573|gb|EEF28096.1| conserved hypothetical protein [Ricinus communis]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/200 (65%), Positives = 152/200 (76%), Gaps = 6/200 (3%)

Query: 1   MAVRGAAAIACTTRGRNPFVSSAN--HYFFMRFHHSPSRSFQRFTSHPNHRSG-YRNQIR 57
           MA++G    AC    R  + SS +   Y   RFHHS S   +RFT +P  ++G +   +R
Sbjct: 1   MAIKGVVT-ACNVARRGSYQSSLSVPRYLTFRFHHSSSYPPKRFTFYPTSQTGKFMYSVR 59

Query: 58  AIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI 117
           AI  A  DP+T+KK+ ++  +P  WKIKMLYDGDCPLCMREVNML+ERNK Y TIKFVDI
Sbjct: 60  AIHKAIVDPVTTKKKNEEKSTP--WKIKMLYDGDCPLCMREVNMLRERNKSYDTIKFVDI 117

Query: 118 SSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIA 177
           SS +YS EENQGLDY TVMG IHAI+SDGT+VTDVEAFRRLYE+VGLGWVYAITKYEPI 
Sbjct: 118 SSKDYSPEENQGLDYTTVMGRIHAILSDGTIVTDVEAFRRLYEQVGLGWVYAITKYEPIG 177

Query: 178 KIADFVYSVWAKYRLQITGK 197
            IAD VYS WAKYRLQITG+
Sbjct: 178 SIADVVYSFWAKYRLQITGR 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807536|ref|NP_001242657.1| uncharacterized protein LOC100814016 [Glycine max] gi|255647257|gb|ACU24096.1| unknown [Glycine max]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 144/185 (77%), Gaps = 2/185 (1%)

Query: 13  TRGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAIQGATADPLTSKKE 72
           ++  NP   S  H   ++FH+ PS + +     P      R  IRAI  AT +P  SKKE
Sbjct: 20  SKPHNPPFLSLPHPNTLKFHNQPSHNPRNNVLLPLPSRSQRCYIRAISDATVEPEISKKE 79

Query: 73  YDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDY 132
            ++  SP++WKIKMLYDGDCPLCMREVNML+ERNK YGTIKFVDI SD+YS EENQGLDY
Sbjct: 80  QNE--SPKDWKIKMLYDGDCPLCMREVNMLRERNKSYGTIKFVDIGSDDYSPEENQGLDY 137

Query: 133 KTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRL 192
           +TVMG IHAI+SDG+VVTDVEAFRRLYE VGLGWVYAITKYEPIAKIAD +Y VWAKYRL
Sbjct: 138 ETVMGRIHAILSDGSVVTDVEAFRRLYEHVGLGWVYAITKYEPIAKIADPIYGVWAKYRL 197

Query: 193 QITGK 197
           QITG+
Sbjct: 198 QITGR 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457126|ref|XP_002283569.1| PREDICTED: uncharacterized protein At5g50100, mitochondrial [Vitis vinifera] gi|297733833|emb|CBI15080.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 129/191 (67%), Positives = 147/191 (76%), Gaps = 9/191 (4%)

Query: 7   AAIACTTRGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAIQGATADP 66
           AA  C  +  +P + +       RFH S S    +F S+P   +G R  IRAI GATA+ 
Sbjct: 8   AASVCIGKHGSPSLRT-------RFHGSASNPLHKFISYPT-VAGLRYPIRAIHGATAEA 59

Query: 67  LTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEE 126
           +  KK   ++ S ++WKIKMLYDG+CPLCMREVNML+ERNKQYG IKFVDISSD+YS EE
Sbjct: 60  VAPKKA-GEEKSYQDWKIKMLYDGECPLCMREVNMLRERNKQYGAIKFVDISSDDYSPEE 118

Query: 127 NQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSV 186
           NQGLDYKTVMG IHAI SDGTVVTDVEAFRRLYEEVGLGWVYAITKY+PIA IAD VY V
Sbjct: 119 NQGLDYKTVMGRIHAIQSDGTVVTDVEAFRRLYEEVGLGWVYAITKYKPIATIADAVYGV 178

Query: 187 WAKYRLQITGK 197
           WAKYRLQITG+
Sbjct: 179 WAKYRLQITGR 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135751|ref|XP_002322151.1| predicted protein [Populus trichocarpa] gi|222869147|gb|EEF06278.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 115/143 (80%), Positives = 129/143 (90%), Gaps = 2/143 (1%)

Query: 55  QIRAIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKF 114
           ++RAI  AT +PLTS K+   +P P+NW IKMLYDGDCPLCMREVNML+ERN+ YGTIKF
Sbjct: 2   RVRAIHEATVEPLTSNKQ--NEPQPQNWNIKMLYDGDCPLCMREVNMLRERNESYGTIKF 59

Query: 115 VDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYE 174
           VDISSDEYS EENQGLDYKTVMG IHAI+SDGTVVTDVEAFR+LYEEVGLGWVYA+TKYE
Sbjct: 60  VDISSDEYSPEENQGLDYKTVMGRIHAILSDGTVVTDVEAFRKLYEEVGLGWVYAVTKYE 119

Query: 175 PIAKIADFVYSVWAKYRLQITGK 197
           PIA IAD +YSVWAKYRLQ+TG+
Sbjct: 120 PIATIADAIYSVWAKYRLQVTGR 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792301|ref|XP_002864035.1| hypothetical protein ARALYDRAFT_495066 [Arabidopsis lyrata subsp. lyrata] gi|297309870|gb|EFH40294.1| hypothetical protein ARALYDRAFT_495066 [Arabidopsis lyrata subsp. lyrata]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 150/199 (75%), Gaps = 14/199 (7%)

Query: 1   MAVRGAAAIACTT--RGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRA 58
           MA RGAAA A T     RNP + S +++F   F+H       R        +G++ Q+RA
Sbjct: 1   MATRGAAAAASTIWKHRRNPSLRSLSNHFNPNFNH-------RIIP-----TGFKYQVRA 48

Query: 59  IQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118
           IQG + DP+ +  +   +P P+NWKIKMLYDGDCPLCMREVNML ERN+++GTIKFVDIS
Sbjct: 49  IQGTSTDPVITPLKNRDEPKPQNWKIKMLYDGDCPLCMREVNMLMERNEKHGTIKFVDIS 108

Query: 119 SDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAK 178
           S++YS E+NQGLDYKTVMG IHAI SDG VVT VEAFRRLYEEVGLGWVY ITK+EPI K
Sbjct: 109 SNDYSPEDNQGLDYKTVMGQIHAIQSDGNVVTGVEAFRRLYEEVGLGWVYTITKFEPIGK 168

Query: 179 IADFVYSVWAKYRLQITGK 197
           +AD VY VWAKYRLQ+TG+
Sbjct: 169 LADVVYDVWAKYRLQVTGR 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807530|ref|NP_001242656.1| uncharacterized protein LOC100785087 [Glycine max] gi|255639025|gb|ACU19813.1| unknown [Glycine max]

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 141/191 (73%), Gaps = 11/191 (5%)

Query: 9   IACTTRGRNPFVSSANHY--FFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAIQGATADP 66
           ++  +R +NP   S  H     ++FH  P         HP      R  +RAI     +P
Sbjct: 13  VSRISRPQNPSFFSLQHRNNGTLKFHSPP-------FHHPLPTPSKRRNVRAISEVAVEP 65

Query: 67  LTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEE 126
             SKKE ++  SP++WKIKMLYDGDCPLCMREVNML+ERNK YGTIKFVDI SDEYS EE
Sbjct: 66  EISKKEQNE--SPKDWKIKMLYDGDCPLCMREVNMLRERNKSYGTIKFVDIGSDEYSPEE 123

Query: 127 NQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSV 186
           NQGLDY+TVMG IHAI+SDGTV TDVEAFRRLYE VGLGWVYAITKYEPIAKIAD +Y V
Sbjct: 124 NQGLDYETVMGRIHAILSDGTVATDVEAFRRLYEHVGLGWVYAITKYEPIAKIADSLYGV 183

Query: 187 WAKYRLQITGK 197
           WAKYRLQITG+
Sbjct: 184 WAKYRLQITGR 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423105|ref|NP_568719.1| putative thiol-disulfide oxidoreductase DCC [Arabidopsis thaliana] gi|75162429|sp|Q8W485.1|Y5010_ARATH RecName: Full=Uncharacterized protein At5g50100, mitochondrial; Flags: Precursor gi|17065380|gb|AAL32844.1| Unknown protein [Arabidopsis thaliana] gi|20148617|gb|AAM10199.1| unknown protein [Arabidopsis thaliana] gi|21593055|gb|AAM65004.1| unknown [Arabidopsis thaliana] gi|332008513|gb|AED95896.1| putative thiol-disulfide oxidoreductase DCC [Arabidopsis thaliana]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/200 (61%), Positives = 149/200 (74%), Gaps = 15/200 (7%)

Query: 1   MAVRGAAAIACTT---RGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIR 57
           MA RGA A A +T     RNP + S + +F   F+H       R        +G++ Q+R
Sbjct: 1   MATRGAVAAAASTIWKHRRNPSLRSLSRHFNPNFNH-------RIIP-----TGFKYQVR 48

Query: 58  AIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI 117
           AIQG + DP+ +  +  ++P P+NWKIKMLYDGDCPLCMREVNML ERN+++GTIKFVDI
Sbjct: 49  AIQGTSTDPVITPLKNREEPKPQNWKIKMLYDGDCPLCMREVNMLMERNEKHGTIKFVDI 108

Query: 118 SSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIA 177
           SS++YS E+NQGLDYKTVMG IHAI SDG VV  VEAFRRLYEEVGLGWVY ITK+EPI 
Sbjct: 109 SSNDYSPEDNQGLDYKTVMGQIHAIQSDGNVVKGVEAFRRLYEEVGLGWVYTITKFEPIG 168

Query: 178 KIADFVYSVWAKYRLQITGK 197
           K+AD VY VWAKYRLQ+TG+
Sbjct: 169 KLADVVYDVWAKYRLQVTGR 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18146782|dbj|BAB82450.1| PBng143 [Vigna radiata]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 150/198 (75%), Gaps = 7/198 (3%)

Query: 1   MAVRGAAAIACTTRGRNP-FVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAI 59
           + V  AA+++  +  +NP F S       ++FH+SPS +  R  + P     Y   IR I
Sbjct: 5   LRVATAASVSRNSMPKNPTFFSLPYFNCTLKFHNSPSLN-PRPNALPTRPHHY---IRVI 60

Query: 60  QGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS 119
             AT +P  SKK+  K+ SP++WKIKMLYDGDCPLCMREVNML+ERN+ YGTIKFVDI S
Sbjct: 61  SEATVEPEISKKQ--KNDSPKDWKIKMLYDGDCPLCMREVNMLRERNRSYGTIKFVDIGS 118

Query: 120 DEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKI 179
           D+YS +ENQ +DY+T MG IHAI+SDGTVVTDVEAFRRLYE VGLGWVYAITKYEPIAKI
Sbjct: 119 DDYSPDENQNIDYETAMGRIHAILSDGTVVTDVEAFRRLYEHVGLGWVYAITKYEPIAKI 178

Query: 180 ADFVYSVWAKYRLQITGK 197
           AD VY VWAKYRLQITG+
Sbjct: 179 ADSVYGVWAKYRLQITGR 196

Source: Vigna radiata

Species: Vigna radiata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518351|gb|AFK47237.1| unknown [Lotus japonicus]

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 117/172 (68%), Positives = 132/172 (76%), Gaps = 11/172 (6%)

Query: 27  FFMRFHHSPSRSFQRFTSHPNHRSGYRNQIRAI-QGATADPLTSKKEYDKDPSPENWKIK 85
           FF   HH+           P  + G +  IRAI + A  +P  SKKE D      +WKIK
Sbjct: 30  FFSLPHHNLPLPL------PIRKLGSQCHIRAISEAAAVEPAISKKEGDG----RDWKIK 79

Query: 86  MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSD 145
           +LYDGDCPLCMREVNML+ERNK YGTIKFVDI SD+YS EENQGLDY+T MG IHA++SD
Sbjct: 80  ILYDGDCPLCMREVNMLRERNKSYGTIKFVDIGSDDYSPEENQGLDYETAMGRIHAVLSD 139

Query: 146 GTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGK 197
           GTVVTDVEAFRRLYE+VGLGWVYAITKYEPIAKIAD VY VWAKYRLQ+TG+
Sbjct: 140 GTVVTDVEAFRRLYEQVGLGWVYAITKYEPIAKIADSVYGVWAKYRLQVTGR 191

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440704|ref|XP_004138124.1| PREDICTED: uncharacterized protein At5g50100, mitochondrial-like [Cucumis sativus] gi|449477382|ref|XP_004155007.1| PREDICTED: uncharacterized protein At5g50100, mitochondrial-like [Cucumis sativus]

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/198 (58%), Positives = 143/198 (72%), Gaps = 2/198 (1%)

Query: 1   MAVRGAAAIACTTRGRNPFVSSANHYFFMRFHHSPSRSFQRFTS-HPNHRSGYRNQIRAI 59
           MA  GAAA A  ++      +                S Q F+     ++ G + QIRAI
Sbjct: 1   MAFGGAAAPAMASKFATTITTPIRLIPSSHLPKLGRHSTQLFSPFRTTNQLGLKYQIRAI 60

Query: 60  QGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS 119
             A  DP++S KE + + S ++WKIKMLYDGDCPLCMREVNML+ERNKQYGTIKFVDI S
Sbjct: 61  SEAVVDPVSSNKE-NGEGSSQSWKIKMLYDGDCPLCMREVNMLRERNKQYGTIKFVDIGS 119

Query: 120 DEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKI 179
           D+Y+ +ENQGLDYKTVMG IHAI++DGTVV DVEAFR+LYE+VGLGWVYA+TKYEP  ++
Sbjct: 120 DDYTPQENQGLDYKTVMGRIHAILADGTVVRDVEAFRKLYEQVGLGWVYAVTKYEPFGRL 179

Query: 180 ADFVYSVWAKYRLQITGK 197
           AD  Y +WA+YRLQ+TG+
Sbjct: 180 ADAAYGLWARYRLQLTGR 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2170041	214	AT5G50100 "AT5G50100" [Arabido	0.898	0.864	0.62	1.2e-60
UNIPROTKB|Q885H3	163	PSPTO_1860 "Uncharacterized pr	0.514	0.650	0.330	7.4e-11
UNIPROTKB|Q8EIR5	129	SO_0771 "Thiol-disulphide oxid	0.524	0.837	0.258	4.2e-07
TIGR_CMR|SO_0771	129	SO_0771 "conserved hypothetica	0.524	0.837	0.258	4.2e-07
UNIPROTKB|Q74GL0	138	GSU0236 "Uncharacterized prote	0.446	0.666	0.276	7.2e-07
TIGR_CMR|GSU_0236	138	GSU_0236 "conserved hypothetic	0.446	0.666	0.276	7.2e-07
UNIPROTKB|Q9KR35	139	VC_1812 "Putative uncharacteri	0.529	0.784	0.278	2.1e-06
TIGR_CMR|VC_1812	139	VC_1812 "conserved hypothetica	0.529	0.784	0.278	2.1e-06

TAIR|locus:2170041 AT5G50100 "AT5G50100" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 124/200 (62%), Positives = 150/200 (75%)

Query:     1 MAVRGAAAIACTT---RGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIR 57
             MA RGA A A +T     RNP + S + +F   F+H       R    P   +G++ Q+R
Sbjct:     1 MATRGAVAAAASTIWKHRRNPSLRSLSRHFNPNFNH-------RII--P---TGFKYQVR 48

Query:    58 AIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI 117
             AIQG + DP+ +  +  ++P P+NWKIKMLYDGDCPLCMREVNML ERN+++GTIKFVDI
Sbjct:    49 AIQGTSTDPVITPLKNREEPKPQNWKIKMLYDGDCPLCMREVNMLMERNEKHGTIKFVDI 108

Query:   118 SSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIA 177
             SS++YS E+NQGLDYKTVMG IHAI SDG VV  VEAFRRLYEEVGLGWVY ITK+EPI 
Sbjct:   109 SSNDYSPEDNQGLDYKTVMGQIHAIQSDGNVVKGVEAFRRLYEEVGLGWVYTITKFEPIG 168

Query:   178 KIADFVYSVWAKYRLQITGK 197
             K+AD VY VWAKYRLQ+TG+
Sbjct:   169 KLADVVYDVWAKYRLQVTGR 188

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

UNIPROTKB|Q885H3 PSPTO_1860 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 37/112 (33%), Positives = 60/112 (53%)

Query:    82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHA 141
             W + + +DG+CPLC RE+ +L+ R      + FVDIS D +      GL    +  S+HA
Sbjct:    17 WPLTLYFDGECPLCAREIKVLRARAAA-DRLLFVDISDDAFDASL-LGLTLPQMESSLHA 74

Query:   142 IVSDGTVVTDVEAFRRLYEEVGLG-WVYAITKYEPIAK-IADFVYSVWAKYR 191
                DGT VT ++A    +   GLG WV  ++   PI + +   +Y ++ ++R
Sbjct:    75 RFDDGTWVTGLDATLWSWRAAGLGKWVAPLSW--PILRPLFTVLYRLFCRFR 124

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EIR5 SO_0771 "Thiol-disulphide oxidoreductase DCC family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 117 (46.2 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 30/116 (25%), Positives = 62/116 (53%)

Query:    83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQ-GLDYKTVMGSIHA 141
             ++++ +DG+CPLC  E+  LK R+     I+ VD++++ +S   +    DY   +  +H 
Sbjct:     2 ELRIFFDGNCPLCSAEMRQLKARDPD-DHIELVDLNAENFSSRFSYIDKDYANTI--LHG 58

Query:   142 IVSDGTVVTDVEAFRRLYEEVGLG-WVYAITKYEPIAK-IADFVYSVWAKYRLQIT 195
               + G V+  ++   + +   G   W+  +    P+ K +AD+ Y  +AK+R +I+
Sbjct:    59 ETASGQVLLGLDVTCKAWALTGTRPWIQVLRL--PLIKPLADWCYLRFAKHRYRIS 112

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_0771 SO_0771 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 117 (46.2 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 30/116 (25%), Positives = 62/116 (53%)

Query:    83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQ-GLDYKTVMGSIHA 141
             ++++ +DG+CPLC  E+  LK R+     I+ VD++++ +S   +    DY   +  +H 
Sbjct:     2 ELRIFFDGNCPLCSAEMRQLKARDPD-DHIELVDLNAENFSSRFSYIDKDYANTI--LHG 58

Query:   142 IVSDGTVVTDVEAFRRLYEEVGLG-WVYAITKYEPIAK-IADFVYSVWAKYRLQIT 195
               + G V+  ++   + +   G   W+  +    P+ K +AD+ Y  +AK+R +I+
Sbjct:    59 ETASGQVLLGLDVTCKAWALTGTRPWIQVLRL--PLIKPLADWCYLRFAKHRYRIS 112

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q74GL0 GSU0236 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 115 (45.5 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 26/94 (27%), Positives = 44/94 (46%)

Query:    77 PSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVM 136
             P+P  + + + YDG C +C  E+ + + +N   G + FVDIS   +      G+  +  M
Sbjct:     2 PTPPAFPLTVFYDGACSVCAAEMAVYRRKNHG-GRLVFVDISDPAFD-PSPWGITLEAFM 59

Query:   137 GSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAI 170
               +HAI  DG     VE F  +++       Y +
Sbjct:    60 AQMHAIDRDGRAYRGVEGFWAIWQAFPASTFYGL 93

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0236 GSU_0236 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 115 (45.5 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 26/94 (27%), Positives = 44/94 (46%)

Query:    77 PSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVM 136
             P+P  + + + YDG C +C  E+ + + +N   G + FVDIS   +      G+  +  M
Sbjct:     2 PTPPAFPLTVFYDGACSVCAAEMAVYRRKNHG-GRLVFVDISDPAFD-PSPWGITLEAFM 59

Query:   137 GSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAI 170
               +HAI  DG     VE F  +++       Y +
Sbjct:    60 AQMHAIDRDGRAYRGVEGFWAIWQAFPASTFYGL 93

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KR35 VC_1812 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 111 (44.1 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 32/115 (27%), Positives = 60/115 (52%)

Query:    86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSD 145
             + +DG CPLC  E+  LK  + Q   I  VD+  D  ++     +D +  +  +H I   
Sbjct:    16 IFFDGQCPLCCNEMRALKTADHQ-ARILLVDVH-DTDTMSCYPSIDKQRALSILHGIDQQ 73

Query:   146 GTVVTDVEAFRRLYEEVGLG-WVYAITKYEPIAK-IADFVYSVWAKYRLQITGKF 198
             G ++  ++     +  V    W++ IT+  PI K I+D +Y ++AK+R++++  F
Sbjct:    74 GQLLYGLDVTVLAWRLVNRHRWLF-ITRM-PILKGISDRMYLLFAKHRMRLSRWF 126

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_1812 VC_1812 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 111 (44.1 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 32/115 (27%), Positives = 60/115 (52%)

Query:    86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSD 145
             + +DG CPLC  E+  LK  + Q   I  VD+  D  ++     +D +  +  +H I   
Sbjct:    16 IFFDGQCPLCCNEMRALKTADHQ-ARILLVDVH-DTDTMSCYPSIDKQRALSILHGIDQQ 73

Query:   146 GTVVTDVEAFRRLYEEVGLG-WVYAITKYEPIAK-IADFVYSVWAKYRLQITGKF 198
             G ++  ++     +  V    W++ IT+  PI K I+D +Y ++AK+R++++  F
Sbjct:    74 GQLLYGLDVTVLAWRLVNRHRWLF-ITRM-PILKGISDRMYLLFAKHRMRLSRWF 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      206       206   0.00097  111 3  11 22  0.46    32
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  191 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.96u 0.16s 21.12t   Elapsed:  00:00:01
  Total cpu time:  20.96u 0.16s 21.12t   Elapsed:  00:00:01
  Start:  Mon May 20 18:26:51 2013   End:  Mon May 20 18:26:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W485	Y5010_ARATH	No assigned EC number	0.615	0.8980	0.8644	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XV.1392.1	hypothetical protein (167 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XI.1083.1	hypothetical protein (264 aa)	•								0.477
	gw1.II.4176.1	SubName- Full=Putative uncharacterized protein; (163 aa)	•								0.404
	estExt_Genewise1_v1.C_LG_XII1182	hypothetical protein (279 aa)	•								0.403

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam04134	113	pfam04134, DUF393, Protein of unknown function, DU	7e-28
COG3011	137	COG3011, COG3011, Predicted thiol-disulfide oxidor	6e-14

>gnl|CDD|217918 pfam04134, DUF393, Protein of unknown function, DUF393

 Score =  101 bits (253), Expect = 7e-28
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 87  LYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE-YSIEENQGLDYKTVMGSIHAIVSD 145
           LYDG+CPLC REV  L+ R++  G ++FVDI S E  ++ E  G+D + +   +H +   
Sbjct: 2   LYDGECPLCNREVRFLERRDRG-GRLRFVDIQSAEGQALLEAFGIDPEDLDSRLH-VEDG 59

Query: 146 GTVVTDVEAFRRLYEEVG--LGWVYAITKYEPIAKIADFVYSVWAKYRLQITGK 197
           G V T  +AF  ++  +      + A+ +   +  + D +Y   A+ R ++ G+
Sbjct: 60  GDVYTGSDAFLEIWRLLPGPWRLLAALLRLPRLRPLRDALYRFIARNRYRLFGR 113

Members of this family have two highly conserved cysteine residues near their N-terminus. The function of these proteins is unknown. Length = 113

>gnl|CDD|225556 COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only]

 Score = 65.5 bits (160), Expect = 6e-14
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 77  PSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE-YSIEENQGLDYKTV 135
           P  +   + +LYDG CPLC   V  L  R++  G I+F  + S+   ++ E  GLD + V
Sbjct: 3   PQMKKPDLVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDV 61

Query: 136 MGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQIT 195
                 +V  G ++   +A  R+   +   W   +  +     + D VY  +A  R +  
Sbjct: 62  --DSVLLVEAGQLLVGSDAAIRILRLLPGPWRLLVWLWILPRPLRDRVYDFFADNRYRWF 119

Query: 196 GK 197
           G+
Sbjct: 120 GR 121

Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
PF04134	114	DUF393: Protein of unknown function, DUF393; Inter	99.96
COG3011	137	Predicted thiol-disulfide oxidoreductase [General	99.96
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	96.42
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.08
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	95.99
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	95.74
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	95.39
PHA03050	108	glutaredoxin; Provisional	95.04
PRK10638	83	glutaredoxin 3; Provisional	94.82
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	94.69
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	94.65
PRK11200	85	grxA glutaredoxin 1; Provisional	94.25
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	94.04
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	93.8
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	93.75
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	93.05
COG3019	149	Predicted metal-binding protein [General function	92.76
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	92.69
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	92.68
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	92.66
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	92.5
PF13728	215	TraF: F plasmid transfer operon protein	92.11
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	92.02
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	91.5
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	91.41
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	90.93
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	90.58
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	90.46
PRK10824	115	glutaredoxin-4; Provisional	90.36
PRK10329	81	glutaredoxin-like protein; Provisional	90.34
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	90.23
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	90.17
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	90.01
KOG1422	221	consensus Intracellular Cl- channel CLIC, contains	89.46
PTZ00051	98	thioredoxin; Provisional	89.06
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	89.01
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	88.85
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	88.8
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	88.65
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	88.61
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	88.58
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	88.45
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	87.97
PRK13728	181	conjugal transfer protein TrbB; Provisional	87.8
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	87.69
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	87.18
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	86.69
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	86.63
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	86.62
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	86.02
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	85.98
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	85.89
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	85.87
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	85.82
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	85.47
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	85.3
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	85.0
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	84.84
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	84.41
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	84.31
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	84.14
PTZ00062	204	glutaredoxin; Provisional	84.04
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	83.45
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	82.82
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	81.98
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	81.98
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	81.73
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	81.44
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	81.1
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	81.02
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	80.76
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	80.74
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	80.67

>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG

Probab=99.96  E-value=4.5e-29  Score=190.74  Aligned_cols=110  Identities=32%  Similarity=0.587  Sum_probs=100.8

Q ss_pred             EEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe-EEehHHHHHHHHHHcC
Q 028608           86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT-VVTDVEAFRRLYEEVG  163 (206)
Q Consensus        86 VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~-v~~G~dA~~~il~~lp  163 (206)
                      |||||+||||++++++++++|. .+.|+|+|+|++.... ++..|++.|++++.+|+ +++|+ ++.|++|++++++.++
T Consensus         1 v~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~~   78 (114)
T PF04134_consen    1 VFYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRLP   78 (114)
T ss_pred             CEECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHcC
Confidence            7999999999999999999986 7999999998887765 56899999999999999 77886 9999999999999998


Q ss_pred             c--hhhhhhhcccchhhHHHHHHHHHHhhcccccCC
Q 028608          164 L--GWVYAITKYEPIAKIADFVYSVWAKYRLQITGK  197 (206)
Q Consensus       164 ~--~w~~~ll~l~pv~~l~d~~Yr~VArnR~ri~Gr  197 (206)
                      .  +|+..++.+|++++++|++|++||+||++|+||
T Consensus        79 ~~~~~l~~l~~lp~~~~l~~~~Y~~iA~~R~~~~gr  114 (114)
T PF04134_consen   79 GPWRWLAWLLRLPGIRPLADRLYRWIARNRYRWFGR  114 (114)
T ss_pred             cchHHHHHHHHcccHHHHHHHHHHHHHhhHhhhhCc
Confidence            6  555678899999999999999999999999997

Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].

>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]

Probab=99.96  E-value=9e-29  Score=197.25  Aligned_cols=123  Identities=27%  Similarity=0.389  Sum_probs=109.3

Q ss_pred             CCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHHHH
Q 028608           77 PSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAF  155 (206)
Q Consensus        77 ~~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~  155 (206)
                      ++.+.+.++|+|||.|+||..+|+||.++|. .++|+|.++|++.+.. ++..|+++|...  .|+.+++|+.+.|+||+
T Consensus         3 ~~~~~p~~vvlyDG~C~lC~~~vrfLi~~D~-~~~i~f~~~q~e~g~~~l~~~~l~~~~~~--s~~~~~~g~~~~~sdA~   79 (137)
T COG3011           3 PQMKKPDLVVLYDGVCPLCDGWVRFLIRRDQ-GGRIRFAALQSEPGQALLEAAGLDPEDVD--SVLLVEAGQLLVGSDAA   79 (137)
T ss_pred             CCCCCCCEEEEECCcchhHHHHHHHHHHhcc-CCcEEEEeccCchhhhHHhhcCCChhhhh--eeeEecCCceEeccHHH
Confidence            3456678899999999999999999999997 7999999999999887 778899998843  56778999999999999


Q ss_pred             HHHHHHcCchhhhh-hhcccchhhHHHHHHHHHHhhcccccCCCCcCcc
Q 028608          156 RRLYEEVGLGWVYA-ITKYEPIAKIADFVYSVWAKYRLQITGKFMHYKE  203 (206)
Q Consensus       156 ~~il~~lp~~w~~~-ll~l~pv~~l~d~~Yr~VArnR~ri~Gr~~~C~~  203 (206)
                      +++++.++.+|++. .+...| +|++|.+|++||+|||+|||+.+.|..
T Consensus        80 ~~i~~~L~~~Wr~~~~~~~lp-~plrD~~Y~~~A~nRyrwfGr~~~~~~  127 (137)
T COG3011          80 IRILRLLPGPWRLLVWLWILP-RPLRDRVYDFFADNRYRWFGRKDQCEL  127 (137)
T ss_pred             HHHHHHCCcceeeeehhhccc-hHHHHHHHHHHHHhhhhhcCccccccc
Confidence            99999999999864 455566 999999999999999999999998864

>TIGR02180 GRX_euk Glutaredoxin

Probab=96.42  E-value=0.011  Score=41.46  Aligned_cols=71  Identities=17%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-----H-HhCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-----E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR  157 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-----l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~  157 (206)
                      +++|+-.+||.|.+...+|.++.. ...+.+++++......     + +..|.      ..+-.+.-+|+...|.+-+++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~i-~~~~~~~~v~~~~~~~~~~~~l~~~~g~------~~vP~v~i~g~~igg~~~~~~   73 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLNV-KPAYEVVELDQLSNGSEIQDYLEEITGQ------RTVPNIFINGKFIGGCSDLLA   73 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCC-CCCCEEEEeeCCCChHHHHHHHHHHhCC------CCCCeEEECCEEEcCHHHHHH
Confidence            478999999999999999998864 3447888877542111     1 11122      122334458999999999998


Q ss_pred             HHHH
Q 028608          158 LYEE  161 (206)
Q Consensus       158 il~~  161 (206)
                      +...
T Consensus        74 ~~~~   77 (84)
T TIGR02180        74 LYKS   77 (84)
T ss_pred             HHHc
Confidence            8764

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.08  E-value=0.031  Score=38.94  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=47.4

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL  158 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i  158 (206)
                      +++||.=..||.|.+...+|.+++.   .+.++++..+.....+...+...   ..+-++--||+.+.|.+.+..+
T Consensus         2 ~v~ly~~~~C~~C~ka~~~L~~~gi---~~~~~di~~~~~~~~el~~~~g~---~~vP~v~i~~~~iGg~~~~~~~   71 (73)
T cd03027           2 RVTIYSRLGCEDCTAVRLFLREKGL---PYVEINIDIFPERKAELEERTGS---SVVPQIFFNEKLVGGLTDLKSL   71 (73)
T ss_pred             EEEEEecCCChhHHHHHHHHHHCCC---ceEEEECCCCHHHHHHHHHHhCC---CCcCEEEECCEEEeCHHHHHhh
Confidence            5788888899999999999998753   58888998754321111111111   2233445689999999988764

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.99  E-value=0.05  Score=36.18  Aligned_cols=68  Identities=19%  Similarity=0.362  Sum_probs=46.5

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HHh-CCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EEN-QGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~~-~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il  159 (206)
                      ++++|.-..||.|.....+|.+..   -.+..+++..+... . +.. .|.      ..+-++-.+|+.+.|++.+.++.
T Consensus         1 ~v~ly~~~~Cp~C~~~~~~L~~~~---i~~~~~di~~~~~~~~~l~~~~~~------~~~P~~~~~~~~igg~~~~~~~~   71 (72)
T cd02066           1 KVVVFSKSTCPYCKRAKRLLESLG---IEFEEIDILEDGELREELKELSGW------PTVPQIFINGEFIGGYDDLKALH   71 (72)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcC---CcEEEEECCCCHHHHHHHHHHhCC------CCcCEEEECCEEEecHHHHHHhh
Confidence            467888899999999999998875   35778888775432 1 111 111      12323445899999999887653

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.74  E-value=0.035  Score=38.80  Aligned_cols=70  Identities=19%  Similarity=0.336  Sum_probs=47.0

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H----H-HhCCCChhcccceEEEEEeCCeEEehHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I----E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFR  156 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~----l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~  156 (206)
                      ++++|+-.+||.|.....+|.++..   .+.+++++..... .    + +..|.      ..+-++--+|+.+.|.+-+.
T Consensus         1 ~v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~------~~~P~v~~~g~~igg~~~~~   71 (82)
T cd03419           1 PVVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQ------RTVPNVFIGGKFIGGCDDLM   71 (82)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCC------CCCCeEEECCEEEcCHHHHH
Confidence            4688899999999999999998754   4666666654321 1    1 11121      12223345899999999998


Q ss_pred             HHHHH
Q 028608          157 RLYEE  161 (206)
Q Consensus       157 ~il~~  161 (206)
                      .+...
T Consensus        72 ~~~~~   76 (82)
T cd03419          72 ALHKS   76 (82)
T ss_pred             HHHHc
Confidence            88764

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=95.39  E-value=0.18  Score=35.77  Aligned_cols=71  Identities=13%  Similarity=0.315  Sum_probs=49.8

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HH-hCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EE-NQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR  157 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~-~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~  157 (206)
                      .+.+++||.=..||+|.+..++|.+++.   .+..+++..+.... +. ..|      ...+-++.-||+.+.|++.+..
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi---~y~~idi~~~~~~~~~~~~~g------~~~vP~i~i~g~~igG~~~l~~   76 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEKGY---DFEEIPLGNDARGRSLRAVTG------ATTVPQVFIGGKLIGGSDELEA   76 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHcCC---CcEEEECCCChHHHHHHHHHC------CCCcCeEEECCEEEcCHHHHHH
Confidence            4567899999999999999999987643   46777887653322 11 111      1234455669999999998876


Q ss_pred             HH
Q 028608          158 LY  159 (206)
Q Consensus       158 il  159 (206)
                      .+
T Consensus        77 ~l   78 (79)
T TIGR02190        77 YL   78 (79)
T ss_pred             Hh
Confidence            54

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PHA03050 glutaredoxin; Provisional

Probab=95.04  E-value=0.12  Score=39.67  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh----hH-H-HhCCCChhcccceEEEEEeCCeEEehH
Q 028608           79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY----SI-E-ENQGLDYKTVMGSIHAIVSDGTVVTDV  152 (206)
Q Consensus        79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~----~~-l-~~~gld~e~~~~~lhvv~~dG~v~~G~  152 (206)
                      ....+++||-=.+||+|.+..++|.+.......+..+++.....    .. + +..|-      ..+-.+.-+|+.+.|.
T Consensus        10 i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~------~tVP~IfI~g~~iGG~   83 (108)
T PHA03050         10 LANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG------RTVPRIFFGKTSIGGY   83 (108)
T ss_pred             hccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC------CCcCEEEECCEEEeCh
Confidence            34567899999999999999999988754223678888875211    11 1 11221      2334445689999999


Q ss_pred             HHHHHHHHH
Q 028608          153 EAFRRLYEE  161 (206)
Q Consensus       153 dA~~~il~~  161 (206)
                      +-+.++-..
T Consensus        84 ddl~~l~~~   92 (108)
T PHA03050         84 SDLLEIDNM   92 (108)
T ss_pred             HHHHHHHHc
Confidence            988886543

>PRK10638 glutaredoxin 3; Provisional

Probab=94.82  E-value=0.23  Score=35.46  Aligned_cols=73  Identities=16%  Similarity=0.304  Sum_probs=48.5

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      +++||--..||+|.+...+|.++..   .+..+++..+.........++   -...+-++.-+|+.+.|.+.+.++...
T Consensus         3 ~v~ly~~~~Cp~C~~a~~~L~~~gi---~y~~~dv~~~~~~~~~l~~~~---g~~~vP~i~~~g~~igG~~~~~~~~~~   75 (83)
T PRK10638          3 NVEIYTKATCPFCHRAKALLNSKGV---SFQEIPIDGDAAKREEMIKRS---GRTTVPQIFIDAQHIGGCDDLYALDAR   75 (83)
T ss_pred             cEEEEECCCChhHHHHHHHHHHcCC---CcEEEECCCCHHHHHHHHHHh---CCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence            5777888999999999999988753   577788865532111111111   112344555689999999998877654

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=94.69  E-value=0.46  Score=32.87  Aligned_cols=70  Identities=14%  Similarity=0.236  Sum_probs=45.0

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEE-e---CCeEEehHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIV-S---DGTVVTDVEAFRRL  158 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~-~---dG~v~~G~dA~~~i  158 (206)
                      +++||+...||+|.+...+|..+..   .++++++.......+...   +   ...+-++. .   +|++...+.+++.-
T Consensus         1 ~i~Ly~~~~~p~c~kv~~~L~~~gi---~y~~~~~~~~~~~~~~~~---~---~~~vP~l~~~~~~~~~~l~eS~~I~~y   71 (77)
T cd03040           1 KITLYQYKTCPFCCKVRAFLDYHGI---PYEVVEVNPVSRKEIKWS---S---YKKVPILRVESGGDGQQLVDSSVIIST   71 (77)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC---ceEEEECCchhHHHHHHh---C---CCccCEEEECCCCCccEEEcHHHHHHH
Confidence            4688999999999999999987653   366666543222112111   1   12333443 3   48899999999886


Q ss_pred             HHH
Q 028608          159 YEE  161 (206)
Q Consensus       159 l~~  161 (206)
                      +..
T Consensus        72 L~~   74 (77)
T cd03040          72 LKT   74 (77)
T ss_pred             HHH
Confidence            654

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.65  E-value=0.21  Score=34.32  Aligned_cols=70  Identities=16%  Similarity=0.318  Sum_probs=48.0

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-H-HhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il  159 (206)
                      +++||.=-.||.|.....+|.+++   -.+..+++..+... + + +..|.     ...+-++.-+|+...|.+.+.++.
T Consensus         1 ~i~ly~~~~Cp~C~~ak~~L~~~~---i~~~~i~i~~~~~~~~~~~~~~~~-----~~~vP~v~i~g~~igg~~~~~~~~   72 (75)
T cd03418           1 KVEIYTKPNCPYCVRAKALLDKKG---VDYEEIDVDGDPALREEMINRSGG-----RRTVPQIFIGDVHIGGCDDLYALE   72 (75)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCC---CcEEEEECCCCHHHHHHHHHHhCC-----CCccCEEEECCEEEeChHHHHHHH
Confidence            367888889999999999998875   36788888765221 1 1 11121     112344556899999999998876


Q ss_pred             H
Q 028608          160 E  160 (206)
Q Consensus       160 ~  160 (206)
                      +
T Consensus        73 ~   73 (75)
T cd03418          73 R   73 (75)
T ss_pred             h
Confidence            4

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=94.25  E-value=0.31  Score=34.83  Aligned_cols=75  Identities=17%  Similarity=0.309  Sum_probs=50.0

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCChhhh--HH-HhCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISSDEYS--IE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR  157 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s~~~~--~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~  157 (206)
                      +++||+=..||+|.+..++|.+...  ..-.+.++++..+...  .+ ...|...    ..+-.+--||+...|.+-+..
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~----~~vP~ifi~g~~igg~~~~~~   77 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV----ETVPQIFVDQKHIGGCTDFEA   77 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC----CcCCEEEECCEEEcCHHHHHH
Confidence            5788999999999999999988531  1245788888765311  11 1122111    123344469999999999988


Q ss_pred             HHHH
Q 028608          158 LYEE  161 (206)
Q Consensus       158 il~~  161 (206)
                      +.+.
T Consensus        78 ~~~~   81 (85)
T PRK11200         78 YVKE   81 (85)
T ss_pred             HHHH
Confidence            7765

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=94.04  E-value=0.26  Score=33.64  Aligned_cols=36  Identities=25%  Similarity=0.428  Sum_probs=29.5

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE  121 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~  121 (206)
                      +++||+-.+||.|.+...+|.+..   -.+.++++..+.
T Consensus         1 ~v~ly~~~~C~~C~~~~~~L~~~~---~~~~~idi~~~~   36 (77)
T TIGR02200         1 TITVYGTTWCGYCAQLMRTLDKLG---AAYEWVDIEEDE   36 (77)
T ss_pred             CEEEEECCCChhHHHHHHHHHHcC---CceEEEeCcCCH
Confidence            478999999999999999998764   357888887554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=93.80  E-value=0.58  Score=32.75  Aligned_cols=72  Identities=7%  Similarity=0.037  Sum_probs=44.6

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-Ee-CCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VS-DGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv-~~-dG~v~~G~dA~~~il~~  161 (206)
                      +++++...||+|.+...+|..++.   .++.+++........+...+.+   ...+-++ +. +|.+..++.|++.-+..
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~gi---~y~~~~v~~~~~~~~~~~~~~p---~~~vP~l~~~~~~~~l~es~~I~~yL~~   75 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTELEL---DVILYPCPKGSPKRDKFLEKGG---KVQVPYLVDPNTGVQMFESADIVKYLFK   75 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHcCC---cEEEEECCCChHHHHHHHHhCC---CCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence            577888899999999888887643   4666776543211111112222   1333343 33 47899999999987654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=93.75  E-value=0.24  Score=35.19  Aligned_cols=42  Identities=21%  Similarity=0.450  Sum_probs=29.1

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccC--CCEEEEeCCChh
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQY--GTIKFVDISSDE  121 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~--~~I~fvdi~s~~  121 (206)
                      ...-++.||..+|+.|......+.+.-...  ..+.++.++.+.
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~   62 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD   62 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC
Confidence            345678899999999999888777663222  456666655543

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=93.05  E-value=0.73  Score=33.30  Aligned_cols=74  Identities=19%  Similarity=0.358  Sum_probs=48.2

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhhh--HH-HhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEYS--IE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL  158 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~~~--~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i  158 (206)
                      ++||.=.+||+|.+..++|.++...  .-.+..++++.+...  .+ +..|..    ...+-++.-||+...|.+-+..+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~----~~tVP~ifi~g~~igG~~dl~~~   77 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKP----VETVPQIFVDEKHVGGCTDFEQL   77 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCC----CCCcCeEEECCEEecCHHHHHHH
Confidence            4677778999999999999887431  124677777754311  11 112211    12344555699999999999987


Q ss_pred             HHH
Q 028608          159 YEE  161 (206)
Q Consensus       159 l~~  161 (206)
                      .+.
T Consensus        78 ~~~   80 (86)
T TIGR02183        78 VKE   80 (86)
T ss_pred             HHh
Confidence            664

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=92.76  E-value=0.79  Score=37.29  Aligned_cols=109  Identities=19%  Similarity=0.199  Sum_probs=65.2

Q ss_pred             CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEeh---HHH
Q 028608           79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTD---VEA  154 (206)
Q Consensus        79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~G---~dA  154 (206)
                      .+..+++|+||-.|+=|+.|++.++..+-   .+.-+..  ++... .+..|+++|-.  +-|-..-+|.++-|   .+|
T Consensus        23 a~~~~~~vyksPnCGCC~~w~~~mk~~Gf---~Vk~~~~--~d~~alK~~~gIp~e~~--SCHT~VI~Gy~vEGHVPa~a   95 (149)
T COG3019          23 AQATEMVVYKSPNCGCCDEWAQHMKANGF---EVKVVET--DDFLALKRRLGIPYEMQ--SCHTAVINGYYVEGHVPAEA   95 (149)
T ss_pred             cceeeEEEEeCCCCccHHHHHHHHHhCCc---EEEEeec--CcHHHHHHhcCCChhhc--cccEEEEcCEEEeccCCHHH
Confidence            37789999999999999999999985432   3444443  33333 34588876532  34544458887766   577


Q ss_pred             HHHHHHHcC-chhhh---hhhcccchhhHHHHHHHHHHhhcccc
Q 028608          155 FRRLYEEVG-LGWVY---AITKYEPIAKIADFVYSVWAKYRLQI  194 (206)
Q Consensus       155 ~~~il~~lp-~~w~~---~ll~l~pv~~l~d~~Yr~VArnR~ri  194 (206)
                      +.+++..-| ..=++   ....-++.-.=..-.|+.|+.|+..+
T Consensus        96 I~~ll~~~pd~~GlavPgmp~gs~Gme~~~~~~Y~Vv~~~~~g~  139 (149)
T COG3019          96 IARLLAEKPDAKGLAVPGMPVGSPGMEGDRKDSYDVVAVNGDGQ  139 (149)
T ss_pred             HHHHHhCCCCcceecCCCCcCCCCCcCCCCCCceEEEEEcCccc
Confidence            777776544 11111   11121221111245688888887543

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=92.69  E-value=0.63  Score=32.48  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=47.2

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      ++||-=..||.|....++|.+++   -.+..+++..+.....+...+.-   ...+-++.-+|+.+.|.+.+..+...
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~~---i~~~~~di~~~~~~~~~~~~~~g---~~~vP~i~i~g~~igg~~~~~~~~~~   72 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSKG---VTFTEIRVDGDPALRDEMMQRSG---RRTVPQIFIGDVHVGGCDDLYALDRE   72 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHcC---CCcEEEEecCCHHHHHHHHHHhC---CCCcCEEEECCEEEcChHHHHHHHHc
Confidence            35677789999999999998874   35778888765422111100000   12234455689999999999887654

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=92.68  E-value=0.57  Score=32.26  Aligned_cols=68  Identities=15%  Similarity=0.378  Sum_probs=46.4

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHh-CCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EEN-QGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~-~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il  159 (206)
                      +++||-=..||+|.+..++|.+++   -.+..+++..+.... +.. .|.      ..+-++--+|+...|++.+.+.+
T Consensus         2 ~v~lys~~~Cp~C~~ak~~L~~~~---i~~~~~~v~~~~~~~~~~~~~g~------~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTKPGCPFCARAKAALQENG---ISYEEIPLGKDITGRSLRAVTGA------MTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHcC---CCcEEEECCCChhHHHHHHHhCC------CCcCeEEECCEEEeCHHHHHHHh
Confidence            467777889999999999998764   357778887654221 111 121      23445556899999998887764

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=92.66  E-value=0.64  Score=33.90  Aligned_cols=61  Identities=16%  Similarity=0.246  Sum_probs=40.7

Q ss_pred             CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HH-hCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           91 DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EE-NQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        91 ~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~-~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      .||+|.+..++|.+..   -.+..+++..+....  +. ..|      ...+-.+--+|+.+.|.+-+.++..
T Consensus        22 ~Cp~C~~ak~~L~~~~---i~y~~idv~~~~~~~~~l~~~~g------~~tvP~vfi~g~~iGG~~~l~~l~~   85 (90)
T cd03028          22 RCGFSRKVVQILNQLG---VDFGTFDILEDEEVRQGLKEYSN------WPTFPQLYVNGELVGGCDIVKEMHE   85 (90)
T ss_pred             CCcHHHHHHHHHHHcC---CCeEEEEcCCCHHHHHHHHHHhC------CCCCCEEEECCEEEeCHHHHHHHHH
Confidence            8999999999998764   457888876553221  11 112      1123344568999999998887654

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=92.50  E-value=0.6  Score=34.91  Aligned_cols=79  Identities=14%  Similarity=0.147  Sum_probs=50.3

Q ss_pred             CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh-hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608           79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY-SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR  157 (206)
Q Consensus        79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~-~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~  157 (206)
                      ..+.+++||==..||+|.+..++|.+..   -.+..+++..... ..++ ..+..-.-...+-.+--+|+.+.|.+-+.+
T Consensus         5 i~~~~Vvvysk~~Cp~C~~ak~~L~~~~---i~~~~vdid~~~~~~~~~-~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~   80 (99)
T TIGR02189         5 VSEKAVVIFSRSSCCMCHVVKRLLLTLG---VNPAVHEIDKEPAGKDIE-NALSRLGCSPAVPAVFVGGKLVGGLENVMA   80 (99)
T ss_pred             hccCCEEEEECCCCHHHHHHHHHHHHcC---CCCEEEEcCCCccHHHHH-HHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence            3456788898999999999999998764   3467778864422 1110 000000011234455569999999998887


Q ss_pred             HHHH
Q 028608          158 LYEE  161 (206)
Q Consensus       158 il~~  161 (206)
                      +.+.
T Consensus        81 l~~~   84 (99)
T TIGR02189        81 LHIS   84 (99)
T ss_pred             HHHc
Confidence            6543

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PF13728 TraF: F plasmid transfer operon protein

Probab=92.11  E-value=0.13  Score=43.88  Aligned_cols=39  Identities=18%  Similarity=0.530  Sum_probs=28.8

Q ss_pred             CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      .+.+.+++||+|+|++|....--|+.... .-.|....++
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~-~yg~~v~~vs  157 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFAD-KYGFSVIPVS  157 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHH-HhCCEEEEEe
Confidence            36788999999999999999988887754 2334444433

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=92.02  E-value=0.9  Score=32.81  Aligned_cols=77  Identities=19%  Similarity=0.224  Sum_probs=47.4

Q ss_pred             CCCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeC-CeEEehHHH
Q 028608           76 DPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSD-GTVVTDVEA  154 (206)
Q Consensus        76 ~~~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~d-G~v~~G~dA  154 (206)
                      .+.++..++++|+-..||.|.+....|...+.   .+.++.+....... ....+++   ...+-++..+ |.++..+.|
T Consensus        11 ~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~-~~~~~np---~~~vPvL~~~~g~~l~eS~a   83 (89)
T cd03055          11 EPPPVPGIIRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPD-WFLEKNP---QGKVPALEIDEGKVVYESLI   83 (89)
T ss_pred             CCCCCCCcEEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcH-HHHhhCC---CCCcCEEEECCCCEEECHHH
Confidence            34467778899999999999988777776643   35555554322111 1111111   2334455444 889999999


Q ss_pred             HHHHH
Q 028608          155 FRRLY  159 (206)
Q Consensus       155 ~~~il  159 (206)
                      +++-+
T Consensus        84 I~~yL   88 (89)
T cd03055          84 ICEYL   88 (89)
T ss_pred             HHHhh
Confidence            87643

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=91.50  E-value=0.46  Score=31.98  Aligned_cols=36  Identities=19%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      ++++||=.+||.|......+.+.......+.|..+.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id   37 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMID   37 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEE
Confidence            468999999999999999988764323446665443

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=91.41  E-value=0.17  Score=44.57  Aligned_cols=38  Identities=13%  Similarity=0.326  Sum_probs=29.9

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      +++.+++||+|+||+|...+--|+.... .-.|...+++
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~-~yg~~v~~VS  180 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRD-TYGLSVIPVS  180 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHH-HhCCeEEEEe
Confidence            5688999999999999999999988754 3445555544

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=90.93  E-value=0.42  Score=38.79  Aligned_cols=29  Identities=21%  Similarity=0.652  Sum_probs=25.0

Q ss_pred             CCCCceEEEEcCCChhhHHHHHHHHhhcc
Q 028608           79 PENWKIKMLYDGDCPLCMREVNMLKERNK  107 (206)
Q Consensus        79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~  107 (206)
                      .++..++.||-.+||.|+.++-.+.+.-.
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~   77 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQ   77 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHH
Confidence            56678999999999999999999987743

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=90.58  E-value=1.4  Score=32.84  Aligned_cols=63  Identities=17%  Similarity=0.316  Sum_probs=41.0

Q ss_pred             CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HH-hCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EE-NQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        90 G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~-~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      ..||+|.+..++|.++..   .+..+|+..+....  +. ..|-      ..+-.+--+|+.+.|.+.+.++.+.
T Consensus        25 ~~Cp~C~~ak~lL~~~~i---~~~~~di~~~~~~~~~l~~~tg~------~tvP~vfi~g~~iGG~ddl~~l~~~   90 (97)
T TIGR00365        25 PQCGFSARAVQILKACGV---PFAYVNVLEDPEIRQGIKEYSNW------PTIPQLYVKGEFVGGCDIIMEMYQS   90 (97)
T ss_pred             CCCchHHHHHHHHHHcCC---CEEEEECCCCHHHHHHHHHHhCC------CCCCEEEECCEEEeChHHHHHHHHC
Confidence            479999999999988753   47777875443211  11 1121      1233344589999999999887653

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=90.46  E-value=0.24  Score=43.77  Aligned_cols=38  Identities=18%  Similarity=0.382  Sum_probs=29.0

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      +++.+++||+|+||+|...+--|+.... .-.|...+++
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~-~ygi~v~~VS  187 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAK-EYGISVIPIS  187 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHH-HhCCeEEEEe
Confidence            6688999999999999999998877754 2335544444

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK10824 glutaredoxin-4; Provisional

Probab=90.36  E-value=1.6  Score=33.99  Aligned_cols=74  Identities=18%  Similarity=0.275  Sum_probs=45.5

Q ss_pred             CCCCceEEEEcC-----CChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HH-hCCCChhcccceEEEEEeCCeEEe
Q 028608           79 PENWKIKMLYDG-----DCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EE-NQGLDYKTVMGSIHAIVSDGTVVT  150 (206)
Q Consensus        79 ~~~~~l~VlYDG-----~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~-~~gld~e~~~~~lhvv~~dG~v~~  150 (206)
                      ..+.+++||==|     .||+|.+..+.|.....   .+..+++..+... . +. ..|-  ...    --|--+|+.+.
T Consensus        12 I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i---~~~~idi~~d~~~~~~l~~~sg~--~TV----PQIFI~G~~IG   82 (115)
T PRK10824         12 IAENPILLYMKGSPKLPSCGFSAQAVQALSACGE---RFAYVDILQNPDIRAELPKYANW--PTF----PQLWVDGELVG   82 (115)
T ss_pred             HhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCC---CceEEEecCCHHHHHHHHHHhCC--CCC----CeEEECCEEEc
Confidence            345566666665     89999999999988753   4555666544321 1 11 1111  111    12224899999


Q ss_pred             hHHHHHHHHHH
Q 028608          151 DVEAFRRLYEE  161 (206)
Q Consensus       151 G~dA~~~il~~  161 (206)
                      |.|-+.++...
T Consensus        83 G~ddl~~l~~~   93 (115)
T PRK10824         83 GCDIVIEMYQR   93 (115)
T ss_pred             ChHHHHHHHHC
Confidence            99998887653

>PRK10329 glutaredoxin-like protein; Provisional

Probab=90.34  E-value=1.5  Score=31.60  Aligned_cols=62  Identities=11%  Similarity=0.285  Sum_probs=40.4

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      +++||--.+||+|.+...+|.++.   -.+..+++..+....  +...|.      ..+-++..+|..+.|++
T Consensus         2 ~v~lYt~~~Cp~C~~ak~~L~~~g---I~~~~idi~~~~~~~~~~~~~g~------~~vPvv~i~~~~~~Gf~   65 (81)
T PRK10329          2 RITIYTRNDCVQCHATKRAMESRG---FDFEMINVDRVPEAAETLRAQGF------RQLPVVIAGDLSWSGFR   65 (81)
T ss_pred             EEEEEeCCCCHhHHHHHHHHHHCC---CceEEEECCCCHHHHHHHHHcCC------CCcCEEEECCEEEecCC
Confidence            578888999999999999997754   357778887654221  111121      23444555677777765

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=90.23  E-value=1.1  Score=28.83  Aligned_cols=68  Identities=24%  Similarity=0.299  Sum_probs=40.6

Q ss_pred             EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608           85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL  158 (206)
Q Consensus        85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i  158 (206)
                      ++++-..||.|.+....+...+.   .++.+.+............+.+   ...+-++..+|..+.++.|+.+-
T Consensus         2 ~ly~~~~~~~~~~~~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~---~~~~P~l~~~~~~~~es~~I~~y   69 (71)
T cd00570           2 KLYYFPGSPRSLRVRLALEEKGL---PYELVPVDLGEGEQEEFLALNP---LGKVPVLEDGGLVLTESLAILEY   69 (71)
T ss_pred             EEEeCCCCccHHHHHHHHHHcCC---CcEEEEeCCCCCCCHHHHhcCC---CCCCCEEEECCEEEEcHHHHHHH
Confidence            67888889999998888877643   3555554433211100111111   22344555678999999887764

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=90.17  E-value=0.5  Score=40.71  Aligned_cols=36  Identities=22%  Similarity=0.383  Sum_probs=27.6

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEE
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFV  115 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fv  115 (206)
                      ....++||.|-+||+|++.-..+.+.+...-.+.+.
T Consensus       107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~  142 (232)
T PRK10877        107 EKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYL  142 (232)
T ss_pred             CCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence            445789999999999999999998876423345554

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=90.01  E-value=0.77  Score=34.07  Aligned_cols=43  Identities=23%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             CCCceEEEEcC-CChhhHHHHHHHHhhcc--cCCCEEEEeCCChhh
Q 028608           80 ENWKIKMLYDG-DCPLCMREVNMLKERNK--QYGTIKFVDISSDEY  122 (206)
Q Consensus        80 ~~~~l~VlYDG-~CplC~~~v~~L~r~d~--~~~~I~fvdi~s~~~  122 (206)
                      ..+-+++||.+ +||.|..++.-|.+.-.  ....+.++-++.+..
T Consensus        25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~   70 (124)
T PF00578_consen   25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP   70 (124)
T ss_dssp             TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred             CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence            35678999999 99999999987766531  123567766665443

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]

Probab=89.46  E-value=2.4  Score=36.66  Aligned_cols=94  Identities=18%  Similarity=0.170  Sum_probs=59.7

Q ss_pred             EcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc-Cchh
Q 028608           88 YDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV-GLGW  166 (206)
Q Consensus        88 YDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l-p~~w  166 (206)
                      +.|+||||++...-|..++. .=.+.-+|++.....   ...+.+..   .+-++.-||.+.+.++.+...+... +.+.
T Consensus        17 ~~Gdcpf~qr~~m~L~~k~~-~f~vttVd~~~kp~~---f~~~sp~~---~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~   89 (221)
T KOG1422|consen   17 SLGDCPFCQRLFMTLELKGV-PFKVTTVDLSRKPEW---FLDISPGG---KPPVLKFDEKWVTDSDKIEEFLEEKLPPPK   89 (221)
T ss_pred             cCCCChhHHHHHHHHHHcCC-CceEEEeecCCCcHH---HHhhCCCC---CCCeEEeCCceeccHHHHHHHHHHhcCCCC
Confidence            47999999999888876654 345777887765432   23344432   3457778999999999999988774 4433


Q ss_pred             hhhhhcccchhhHHHHHHHHHHh
Q 028608          167 VYAITKYEPIAKIADFVYSVWAK  189 (206)
Q Consensus       167 ~~~ll~l~pv~~l~d~~Yr~VAr  189 (206)
                      ...+ .-+-...++.-+|.-++.
T Consensus        90 ~~~~-~~~E~asag~diF~kF~~  111 (221)
T KOG1422|consen   90 LPTL-APPESASAGSDIFAKFSA  111 (221)
T ss_pred             Cccc-CCHHHHhhHHHHHHHHHH
Confidence            2221 122234556666655543

>PTZ00051 thioredoxin; Provisional

Probab=89.06  E-value=0.83  Score=32.73  Aligned_cols=64  Identities=27%  Similarity=0.460  Sum_probs=40.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      .-++.||..+|+-|+.....+.+.......+.|+.+..+.... ...+++.  ..=+ + ++..+|+..
T Consensus        20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt-~-~~~~~g~~~   84 (98)
T PTZ00051         20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENIT--SMPT-F-KVFKNGSVV   84 (98)
T ss_pred             eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCc--eeeE-E-EEEeCCeEE
Confidence            4568999999999999988887764334457777665543332 3455552  2222 3 344687643

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=89.01  E-value=0.7  Score=40.28  Aligned_cols=37  Identities=11%  Similarity=0.229  Sum_probs=26.5

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDI  117 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi  117 (206)
                      ...++||.|-+||+|++.-.-+..+...+ -+++++++
T Consensus       118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~  155 (251)
T PRK11657        118 PRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV  155 (251)
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence            34689999999999999988877654311 24566654

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=88.85  E-value=0.93  Score=30.06  Aligned_cols=62  Identities=18%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH---HHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI---EENQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~---l~~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      ++++|+-.+||.|.....+|.+.+   -.+..+++.++....   .+..|..      .+-++.-+|+++.|.+
T Consensus         1 ~i~lf~~~~C~~C~~~~~~l~~~~---i~~~~vdi~~~~~~~~~~~~~~~~~------~vP~~~~~~~~~~g~~   65 (74)
T TIGR02196         1 KVKVYTTPWCPPCKKAKEYLTSKG---IAFEEIDVEKDSAAREEVLKVLGQR------GVPVIVIGHKIIVGFD   65 (74)
T ss_pred             CEEEEcCCCChhHHHHHHHHHHCC---CeEEEEeccCCHHHHHHHHHHhCCC------cccEEEECCEEEeeCC
Confidence            468999999999999988887653   357778887643221   1223321      1223334688876654

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=88.80  E-value=1.9  Score=30.99  Aligned_cols=57  Identities=21%  Similarity=0.248  Sum_probs=40.7

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccc
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMG  137 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~  137 (206)
                      ..-+++||+.+|+-|......+.+.... .+.+.|+-+..+.... ....|+..+..-.
T Consensus        13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~   71 (103)
T cd02982          13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPV   71 (103)
T ss_pred             CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCE
Confidence            4566888999999999999988776432 2668888877776443 5678887554433

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=88.65  E-value=4.3  Score=27.62  Aligned_cols=66  Identities=20%  Similarity=0.268  Sum_probs=40.4

Q ss_pred             EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEe-CCeEEehHHHHHH
Q 028608           85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVS-DGTVVTDVEAFRR  157 (206)
Q Consensus        85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~-dG~v~~G~dA~~~  157 (206)
                      ++|+-..||+|.+....+..++.   .++++.+....... +...+++   ...+-++.. ||.....+.|+++
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~-~~~~~np---~~~vP~L~~~~g~~l~eS~aI~~   68 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPA-EMLAASP---KGTVPVLVLGNGTVIEESLDIMR   68 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCH-HHHHHCC---CCCCCEEEECCCcEEecHHHHHH
Confidence            67778899999999888887654   35555444221111 1112232   233445544 6999999998875

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=88.61  E-value=2.6  Score=28.28  Aligned_cols=69  Identities=16%  Similarity=0.134  Sum_probs=40.4

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL  158 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i  158 (206)
                      +++++...||.|.+..-.+...+.   .++.+.+.....  .......+.+   ...+-++..+|.+...+.|+++-
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p---~~~vP~l~~~~~~i~es~aI~~y   71 (73)
T cd03056           1 MKLYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNP---NGEVPVLELDGRVLAESNAILVY   71 (73)
T ss_pred             CEEEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCC---CCCCCEEEECCEEEEcHHHHHHH
Confidence            468889999999988777776643   244444331110  0011111222   23344555678999999998764

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=88.58  E-value=2  Score=31.47  Aligned_cols=38  Identities=13%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDIS  118 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~  118 (206)
                      ..-++.||-.+|+.|..++..+.+... ..+.+.++.+.
T Consensus        22 k~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~   60 (114)
T cd02967          22 RPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS   60 (114)
T ss_pred             CeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe
Confidence            455788999999999999988877532 12346666553

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=88.45  E-value=3.2  Score=28.11  Aligned_cols=70  Identities=17%  Similarity=0.214  Sum_probs=41.4

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC--ChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS--SDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~--s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il  159 (206)
                      +++||...|+.|.+..-.+...+.   .++.+.+.  ...........+.+   .+.+-++..+|.+...+.|+..-+
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p---~~~vP~l~~~~~~l~es~aI~~yL   72 (74)
T cd03045           1 IDLYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNP---QHTVPTLVDNGFVLWESHAILIYL   72 (74)
T ss_pred             CEEEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCc---CCCCCEEEECCEEEEcHHHHHHHH
Confidence            478999999999988888877643   34444433  21100011122222   233445555788999999987644

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=87.97  E-value=4.7  Score=27.26  Aligned_cols=67  Identities=12%  Similarity=0.268  Sum_probs=40.8

Q ss_pred             EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-EeCCeEEehHHHHHHHH
Q 028608           85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv-~~dG~v~~G~dA~~~il  159 (206)
                      ++++.-.||+|.+..-.|..++.   .++.+.+..........  +.+   .+.+-++ +.||.+..++.|+++-+
T Consensus         2 ~Ly~~~~~p~~~rvr~~L~~~gl---~~~~~~~~~~~~~~~~~--~~~---~~~vP~L~~~~~~~l~es~aI~~yL   69 (71)
T cd03037           2 KLYIYEHCPFCVKARMIAGLKNI---PVEQIILQNDDEATPIR--MIG---AKQVPILEKDDGSFMAESLDIVAFI   69 (71)
T ss_pred             ceEecCCCcHhHHHHHHHHHcCC---CeEEEECCCCchHHHHH--hcC---CCccCEEEeCCCeEeehHHHHHHHH
Confidence            57888899999988888876643   45555554332111111  111   2334344 34588999999988654

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=87.80  E-value=0.61  Score=39.16  Aligned_cols=55  Identities=18%  Similarity=0.352  Sum_probs=36.2

Q ss_pred             cCCCCCCCCCcCCCCCCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           62 ATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        62 ~~~~p~~~~~~~~~~~~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      ...+|.....++ ..-+..+.++++||-.+||.|..++-.|.+.... -.+.++.++
T Consensus        52 ~~~~~~f~l~dG-~~v~lsd~~lV~FwaswCp~C~~e~P~L~~l~~~-~g~~Vi~Vs  106 (181)
T PRK13728         52 KPAPRWFRLSNG-RQVNLADWKVVLFMQGHCPYCHQFDPVLKQLAQQ-YGFSVFPYT  106 (181)
T ss_pred             CCCCCccCCCCC-CEeehhHceEEEEECCCCHhHHHHHHHHHHHHHH-cCCEEEEEE
Confidence            334455555543 2233566679999999999999999888777442 236665554

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=87.69  E-value=0.92  Score=34.63  Aligned_cols=38  Identities=18%  Similarity=0.336  Sum_probs=27.1

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCC--CEEEEeC
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYG--TIKFVDI  117 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~--~I~fvdi  117 (206)
                      ....+++|+|=.||.|...-..+.+.....+  ++.|.++
T Consensus         5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~   44 (154)
T cd03023           5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF   44 (154)
T ss_pred             CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence            3457899999999999999888876432122  4566555

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=87.18  E-value=1  Score=37.22  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=27.6

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI  117 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi  117 (206)
                      ....+++|+|-+||+|.+.-..+.+... .-++.+..+
T Consensus        77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~-~v~v~~~~~  113 (197)
T cd03020          77 GKRVVYVFTDPDCPYCRKLEKELKPNAD-GVTVRIFPV  113 (197)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhccC-ceEEEEEEc
Confidence            4568999999999999999998876322 345555544

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=86.69  E-value=6.6  Score=26.34  Aligned_cols=70  Identities=14%  Similarity=0.249  Sum_probs=42.4

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      +++++...||.|.+....+...+.   .+..+.+......+ ....+.+   .+.+-++..+|.....+.|+..-+.
T Consensus         1 ~~ly~~~~~~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~-~~~~~~p---~~~vP~l~~~~~~l~es~aI~~yL~   70 (73)
T cd03059           1 MTLYSGPDDVYSHRVRIVLAEKGV---SVEIIDVDPDNPPE-DLAELNP---YGTVPTLVDRDLVLYESRIIMEYLD   70 (73)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCC---ccEEEEcCCCCCCH-HHHhhCC---CCCCCEEEECCEEEEcHHHHHHHHH
Confidence            468888999999999888876643   34444433221111 1111222   2334455567789999999887654

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=86.63  E-value=0.99  Score=27.51  Aligned_cols=38  Identities=24%  Similarity=0.381  Sum_probs=25.6

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChh
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDE  121 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~  121 (206)
                      +++++..+|+.|......+.+....  .-.+..++.....
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP   40 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh
Confidence            4789999999999999998864111  2344555554443

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=86.62  E-value=1.6  Score=30.00  Aligned_cols=49  Identities=20%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCC
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLD  131 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld  131 (206)
                      +++|||-.+|+.|......+.+.... ...+.+..+..+.... .+.+|+.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~   52 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIM   52 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCc
Confidence            46899999999999999988765211 2335555444332222 3445553

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=86.02  E-value=2.6  Score=33.29  Aligned_cols=38  Identities=11%  Similarity=0.234  Sum_probs=26.4

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s  119 (206)
                      .-+++||..+|+.|......+.+.-.  ....+.++.+..
T Consensus        63 ~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~  102 (173)
T PRK03147         63 GVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNV  102 (173)
T ss_pred             EEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence            36789999999999998777765532  123466666653

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=85.98  E-value=1.5  Score=31.04  Aligned_cols=51  Identities=24%  Similarity=0.422  Sum_probs=34.5

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCC-CEEEEeCCChhhhH-HHhCCCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYG-TIKFVDISSDEYSI-EENQGLD  131 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~-~I~fvdi~s~~~~~-l~~~gld  131 (206)
                      ..-++.||..+|+.|......+.+...... .+.|..+..+.... ...++++
T Consensus        18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~   70 (103)
T PF00085_consen   18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVK   70 (103)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCS
T ss_pred             CCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCC
Confidence            456788999999999999988866643223 67776665554433 4566663

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=85.89  E-value=5.2  Score=32.77  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=26.0

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      .-++.||..+|+.|..++-.|.+...  ..+.++.+.
T Consensus        70 ~vvv~FwatwC~~C~~e~p~l~~l~~--~~~~vi~v~  104 (185)
T PRK15412         70 PVLLNVWATWCPTCRAEHQYLNQLSA--QGIRVVGMN  104 (185)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHH--cCCEEEEEE
Confidence            45788999999999999999887743  235555443

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=85.87  E-value=0.8  Score=33.64  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=17.5

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHh
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKE  104 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r  104 (206)
                      ...+++|+|-+||.|...-..+.+
T Consensus         6 k~~v~~F~~~~C~~C~~~~~~~~~   29 (112)
T PF13098_consen    6 KPIVVVFTDPWCPYCKKLEKELFP   29 (112)
T ss_dssp             SEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHH
Confidence            446788999999999988777764

...

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=85.82  E-value=2  Score=29.83  Aligned_cols=61  Identities=11%  Similarity=0.111  Sum_probs=38.7

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSD  145 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~---~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~d  145 (206)
                      .-+++||..+|+.|......+.+....   ...+.|..+.-+.... .+.+++..  . =.+.+++++
T Consensus        17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~--~-Pt~~~~~~~   81 (101)
T cd02961          17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG--Y-PTIKLFPNG   81 (101)
T ss_pred             cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC--C-CEEEEEcCC
Confidence            567899999999999988877654321   3678888776554222 45566632  2 224455544

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=85.47  E-value=5.8  Score=26.43  Aligned_cols=67  Identities=24%  Similarity=0.273  Sum_probs=38.1

Q ss_pred             EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh---hhhHHHhCCCChhcccceEEEEE-eCCeEEehHHHHHHH
Q 028608           85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD---EYSIEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRRL  158 (206)
Q Consensus        85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~---~~~~l~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~i  158 (206)
                      ++|+-..|+.|.+..-.|..++.   .++.+.+...   .... ....+.+   .+.+-++. .+|.++..+.|++.-
T Consensus         2 ~Ly~~~~s~~~~~~~~~L~~~~l---~~~~~~v~~~~~~~~~~-~~~~~~p---~~~vP~l~~~~~~~l~es~aI~~y   72 (74)
T cd03051           2 KLYDSPTAPNPRRVRIFLAEKGI---DVPLVTVDLAAGEQRSP-EFLAKNP---AGTVPVLELDDGTVITESVAICRY   72 (74)
T ss_pred             EEEeCCCCcchHHHHHHHHHcCC---CceEEEeecccCccCCH-HHHhhCC---CCCCCEEEeCCCCEEecHHHHHHH
Confidence            56777789999998888877653   2333333211   1111 1112222   22334443 578899999998764

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=85.30  E-value=3.7  Score=28.24  Aligned_cols=34  Identities=15%  Similarity=0.318  Sum_probs=27.0

Q ss_pred             EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608           85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE  121 (206)
Q Consensus        85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~  121 (206)
                      +||-=..||.|....++|.+++   -.+..+++..+.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~~---i~~~~~di~~~~   35 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEHG---IAFEEINIDEQP   35 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHCC---CceEEEECCCCH
Confidence            4566678999999999998864   368888988654

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=85.00  E-value=4.5  Score=29.20  Aligned_cols=65  Identities=20%  Similarity=0.299  Sum_probs=37.7

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      ..-+++||..+|+.|......+.+.-. ..+.+.|..+..+.... ....++.  ..= .+.++ .+|++.
T Consensus        14 ~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~--~vP-t~~i~-~~g~~v   80 (97)
T cd02949          14 RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIM--GTP-TVQFF-KDKELV   80 (97)
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCe--ecc-EEEEE-ECCeEE
Confidence            345688999999999999888866421 12356665555432222 3455552  121 24344 577754

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR02740 TraF-like TraF-like protein

Probab=84.84  E-value=3.2  Score=36.66  Aligned_cols=40  Identities=20%  Similarity=0.585  Sum_probs=28.4

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCC-CEEEEeCCC
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYG-TIKFVDISS  119 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~-~I~fvdi~s  119 (206)
                      +..-++.||-++|+.|...+-.|.+.-...+ .|..+++..
T Consensus       166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~  206 (271)
T TIGR02740       166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDG  206 (271)
T ss_pred             CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCC
Confidence            3457899999999999999988877643222 344555544

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=84.41  E-value=3  Score=31.72  Aligned_cols=39  Identities=23%  Similarity=0.251  Sum_probs=27.5

Q ss_pred             CCceEEEEcCCChh-hHHHHHHHHhhcccC-----CCEEEEeCCC
Q 028608           81 NWKIKMLYDGDCPL-CMREVNMLKERNKQY-----GTIKFVDISS  119 (206)
Q Consensus        81 ~~~l~VlYDG~Cpl-C~~~v~~L~r~d~~~-----~~I~fvdi~s  119 (206)
                      ..-+++||-.+|+. |..++..+.+.-...     +.+.++.++.
T Consensus        23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~   67 (142)
T cd02968          23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV   67 (142)
T ss_pred             CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence            45678889999996 999988887652211     2477776653

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=84.31  E-value=4.5  Score=26.62  Aligned_cols=65  Identities=23%  Similarity=0.397  Sum_probs=37.7

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEA  154 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA  154 (206)
                      +++|+=.+||.|.+....|.+.+   -.+..+++........+...+.   -...+-++..+|+.+.|.+.
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~~---i~~~~~~i~~~~~~~~~~~~~~---~~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDERG---IPFEEVDVDEDPEALEELKKLN---GYRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHCC---CCeEEEeCCCCHHHHHHHHHHc---CCcccCEEEECCEEEecCCH
Confidence            57778788999999888887653   3577777765322111111010   01223344457788877653

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=84.14  E-value=1.7  Score=30.79  Aligned_cols=70  Identities=10%  Similarity=0.033  Sum_probs=39.9

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhc---ccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe--EEehH
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERN---KQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT--VVTDV  152 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d---~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~--v~~G~  152 (206)
                      +..-+++||+.+|+.|+.....+.+..   ...+.+.+..+..+.... .+.+++..  . =.+.+++.++.  .+.|.
T Consensus        13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~--~-P~~~~~~~~~~~~~~~g~   88 (102)
T TIGR01126        13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG--F-PTIKFFPKGKKPVDYEGG   88 (102)
T ss_pred             CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc--C-CEEEEecCCCcceeecCC
Confidence            344579999999999998766664432   211257777655543332 34566632  2 23545554442  35553

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PTZ00062 glutaredoxin; Provisional

Probab=84.04  E-value=4  Score=34.81  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=47.5

Q ss_pred             CCCCceEEEEcC-----CChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HH-hCCCChhcccceEEEEEeCCeEEe
Q 028608           79 PENWKIKMLYDG-----DCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EE-NQGLDYKTVMGSIHAIVSDGTVVT  150 (206)
Q Consensus        79 ~~~~~l~VlYDG-----~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~-~~gld~e~~~~~lhvv~~dG~v~~  150 (206)
                      ..+.+++||==|     .||+|++.+++|.+...   .+...|+..+... . +. ..|-      ..+-.+.-+|+.+.
T Consensus       110 i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i---~y~~~DI~~d~~~~~~l~~~sg~------~TvPqVfI~G~~IG  180 (204)
T PTZ00062        110 IRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGV---KYETYNIFEDPDLREELKVYSNW------PTYPQLYVNGELIG  180 (204)
T ss_pred             HhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCC---CEEEEEcCCCHHHHHHHHHHhCC------CCCCeEEECCEEEc
Confidence            556666777665     79999999999988643   4667788754322 1 11 1111      11223445899999


Q ss_pred             hHHHHHHHHH
Q 028608          151 DVEAFRRLYE  160 (206)
Q Consensus       151 G~dA~~~il~  160 (206)
                      |.+-+.++..
T Consensus       181 G~d~l~~l~~  190 (204)
T PTZ00062        181 GHDIIKELYE  190 (204)
T ss_pred             ChHHHHHHHH
Confidence            9998887665

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=83.45  E-value=3.7  Score=30.60  Aligned_cols=66  Identities=20%  Similarity=0.330  Sum_probs=41.4

Q ss_pred             CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608           90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV  162 (206)
Q Consensus        90 G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l  162 (206)
                      |.||+|.+..-.|..+..   .++.+++......+ ....+++.   +.+-++..+|.++..+.++.+.+...
T Consensus        20 g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~-~~~~~nP~---g~vPvL~~~~~~i~eS~~I~eYLde~   85 (91)
T cd03061          20 GNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPE-DLKDLAPG---TQPPFLLYNGEVKTDNNKIEEFLEET   85 (91)
T ss_pred             CCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCH-HHHHhCCC---CCCCEEEECCEEecCHHHHHHHHHHH
Confidence            789999999888877643   35445443221111 12222322   33445566889999999999887764

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=82.82  E-value=2.4  Score=31.01  Aligned_cols=49  Identities=16%  Similarity=0.164  Sum_probs=32.6

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCC
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLD  131 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld  131 (206)
                      .+.+|++.+|+.|......+.+.-...+.+.|.-+.-+.... ...+|+.
T Consensus        15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~   64 (89)
T cd03026          15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIM   64 (89)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCc
Confidence            689999999999999888887764323456655544333322 3456663

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=81.98  E-value=7.2  Score=27.06  Aligned_cols=69  Identities=10%  Similarity=0.038  Sum_probs=41.1

Q ss_pred             EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh--hhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608           85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD--EYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~--~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il  159 (206)
                      ++||...|+.|.+..-.+..++.   .++++.+.-.  .........+++   +..+-++..||.+...+.|+..-+
T Consensus         2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP---~g~vP~L~~~g~~l~Es~aI~~yL   72 (73)
T cd03052           2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNP---TGEVPVLIHGDNIICDPTQIIDYL   72 (73)
T ss_pred             EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCc---CCCCCEEEECCEEEEcHHHHHHHh
Confidence            67888889999887766766543   3444443221  111111223333   234455566899999999988643

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=81.98  E-value=17  Score=33.97  Aligned_cols=72  Identities=10%  Similarity=0.233  Sum_probs=46.7

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHH--HhCC---CChhcccceEEEEEeCCeEEehHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIE--ENQG---LDYKTVMGSIHAIVSDGTVVTDVEAFRR  157 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l--~~~g---ld~e~~~~~lhvv~~dG~v~~G~dA~~~  157 (206)
                      +++||--..||.|.+..++|.+++   -.+..+++..+.....  +..+   +-...-...+-.+.-+|+.+.|.+.+..
T Consensus         3 ~V~vys~~~Cp~C~~aK~~L~~~g---i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~   79 (410)
T PRK12759          3 EVRIYTKTNCPFCDLAKSWFGAND---IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA   79 (410)
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCC---CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence            578999999999999999998875   3577888874432111  1111   0000112233345558999999998876

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=81.73  E-value=2.3  Score=29.30  Aligned_cols=22  Identities=27%  Similarity=0.458  Sum_probs=19.7

Q ss_pred             eEEEEcCCChhhHHHHHHHHhh
Q 028608           84 IKMLYDGDCPLCMREVNMLKER  105 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~  105 (206)
                      +++|+|=.||.|...-..+.+.
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~   22 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKL   22 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHH
Confidence            4789999999999999999876

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=81.44  E-value=9.1  Score=27.02  Aligned_cols=65  Identities=15%  Similarity=0.281  Sum_probs=41.0

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      +..=++.||-.+|+-|......+.+.... ...+.|..+..+.... ...+++.  ..=+ +.++ .+|+.
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~Pt-~~~~-~~g~~   80 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEIT--AVPT-FVFF-RNGTI   80 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCc--cccE-EEEE-ECCEE
Confidence            34456889999999999998888766432 3578887776553332 3455553  2322 3243 57874

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=81.10  E-value=3.8  Score=29.19  Aligned_cols=39  Identities=10%  Similarity=0.183  Sum_probs=27.5

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCCh
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSD  120 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~---~~~I~fvdi~s~  120 (206)
                      .-++.||..+|+.|.....-+.+....   ...+.|..+..+
T Consensus        20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~   61 (104)
T cd02995          20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT   61 (104)
T ss_pred             cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence            456789999999999988877665421   135777655543

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=81.02  E-value=2.8  Score=31.85  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=28.7

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE  121 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~  121 (206)
                      ++||.-..|+.|++..+||.+++.   .+.++++..+.
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~~i---~~~~idi~~~~   35 (111)
T cd03036           1 LKFYEYPKCSTCRKAKKWLDEHGV---DYTAIDIVEEP   35 (111)
T ss_pred             CEEEECCCCHHHHHHHHHHHHcCC---ceEEecccCCc
Confidence            478899999999999999988753   58888886543

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=80.76  E-value=9.8  Score=26.17  Aligned_cols=69  Identities=22%  Similarity=0.250  Sum_probs=45.0

Q ss_pred             EEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608           86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV  162 (206)
Q Consensus        86 VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l  162 (206)
                      ++....||+|.+..-.++.+..   .++++++....... ....  .   -...+-++..||.++.++.+++.-+...
T Consensus         1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~--~---p~~~vPvL~~~g~~l~dS~~I~~yL~~~   70 (75)
T PF13417_consen    1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKL--N---PKGKVPVLVDDGEVLTDSAAIIEYLEER   70 (75)
T ss_dssp             EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHH--S---TTSBSSEEEETTEEEESHHHHHHHHHHH
T ss_pred             CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhh--c---ccccceEEEECCEEEeCHHHHHHHHHHH
Confidence            4677899999999888877643   46666655433211 1111  1   1233445567899999999999877654

...

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=80.74  E-value=11  Score=25.57  Aligned_cols=71  Identities=15%  Similarity=0.162  Sum_probs=41.7

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      +++|+...|+.|.+..-.+...+.   .+.++.+.....  .......+.+   .+.+-++..+|.++..+.|++.-+.
T Consensus         2 ~~Ly~~~~s~~s~~v~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~P---~~~vP~l~~~g~~l~es~aI~~yL~   74 (76)
T cd03053           2 LKLYGAAMSTCVRRVLLCLEEKGV---DYELVPVDLTKGEHKSPEHLARNP---FGQIPALEDGDLKLFESRAITRYLA   74 (76)
T ss_pred             eEEEeCCCChhHHHHHHHHHHcCC---CcEEEEeCccccccCCHHHHhhCC---CCCCCEEEECCEEEEcHHHHHHHHh
Confidence            467778889999988777766543   344444332111  0011122222   2334455567889999999987654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=80.67  E-value=5.6  Score=33.36  Aligned_cols=68  Identities=21%  Similarity=0.176  Sum_probs=39.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      -.+++||..+||.|......+.+.....+.+.+..+..+.... ...+|+..  . =.+ ++..+|+.+.|..
T Consensus       135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~--v-Ptl-~i~~~~~~~~G~~  203 (215)
T TIGR02187       135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMS--V-PKI-VINKGVEEFVGAY  203 (215)
T ss_pred             cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCcc--C-CEE-EEecCCEEEECCC
Confidence            3567789999999998888777664323456654333322222 23455521  1 123 4455676577753

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	96.36
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	96.26
1kte_A	105	Thioltransferase; redox-active center, electron tr	95.79
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	95.69
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	95.59
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	95.55
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	95.37
2l57_A	126	Uncharacterized protein; structural genomics, unkn	95.35
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	95.12
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	95.12
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	94.96
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	94.89
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	94.86
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	94.73
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	94.69
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	94.67
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	94.49
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	94.49
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	94.27
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	94.26
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	94.22
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	94.17
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	94.13
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	94.09
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	93.91
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	93.83
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	93.73
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	93.73
4evm_A	138	Thioredoxin family protein; structural genomics, n	93.69
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	93.67
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	93.4
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	93.35
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	93.23
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	93.14
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	93.06
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	93.01
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	93.01
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	92.96
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	92.92
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	92.9
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	92.87
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	92.8
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	92.69
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	92.69
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	92.58
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	92.58
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	92.57
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	92.54
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	92.43
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	92.43
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	92.42
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	92.35
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	92.28
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	92.14
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	92.11
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	92.1
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	92.05
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	92.04
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	91.92
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	91.89
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	91.88
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	91.76
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	91.75
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	91.74
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	91.62
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	91.38
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	91.36
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	91.32
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	91.3
2lrt_A	152	Uncharacterized protein; structural genomics, thio	91.28
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	91.25
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	91.24
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	91.21
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	91.11
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	91.07
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	91.03
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	90.93
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	90.93
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	90.92
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	90.8
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	90.79
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	90.7
3raz_A	151	Thioredoxin-related protein; structural genomics,	90.55
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	90.5
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	90.46
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	90.44
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	90.42
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	90.39
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	90.25
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	90.19
3q18_A	239	GSTO-2, glutathione S-transferase omega-2; glutath	90.18
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	89.94
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	89.83
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	89.82
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	89.74
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	89.38
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	89.35
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	89.32
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	89.29
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	89.28
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	89.28
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	89.27
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	89.24
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	89.19
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	88.93
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	88.91
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	88.84
1ttz_A	87	Conserved hypothetical protein; structural genomic	88.79
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	88.76
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	88.55
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	88.18
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	88.13
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	88.12
4hi7_A	228	GI20122; GST, glutathione S-transferase, enzyme fu	88.09
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	88.05
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	88.01
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	87.93
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	87.88
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	87.83
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	87.66
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	87.49
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	87.35
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	87.31
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	87.29
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	87.15
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	87.11
3qav_A	243	RHO-class glutathione S-transferase; cytosol; 2.10	86.91
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	86.78
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	86.77
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	86.75
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	86.73
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	86.71
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	86.59
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	86.59
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	86.44
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	86.44
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	86.37
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	86.15
2imi_A	221	Epsilon-class glutathione S-transferase; HET: GSH;	86.1
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	86.02
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	85.99
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	85.83
3rbt_A	246	Glutathione transferase O1; glutathione S-transfer	85.79
3fz4_A	120	Putative arsenate reductase; APC61768, structural	85.76
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	85.68
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	85.66
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	85.49
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	85.46
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	85.4
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	85.14
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	85.06
3bby_A	215	Uncharacterized GST-like protein YFCF; NP_416804.1	85.04
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	84.94
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	84.69
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	84.55
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	84.38
1r5a_A	218	Glutathione transferase; glutathione S-transferase	84.28
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	84.2
4hz2_A	230	Glutathione S-transferase domain; glutathione,enzy	84.09
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	84.06
1gnw_A	211	Glutathione S-transferase; herbicide detoxificatio	84.04
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	83.97
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	83.82
1z6m_A	175	Conserved hypothetical protein; structural genomic	83.63
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	83.51
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	83.25
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	82.91
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	83.47
1ljr_A	244	HGST T2-2, glutathione S-transferase; HET: GSH; 3.	82.77
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	82.76
3ein_A	209	GST class-theta, glutathione S-transferase 1-1; de	82.73
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	82.47
1axd_A	209	Glutathione S-transferase I; transferase, herbicid	82.44
3m3m_A	210	Glutathione S-transferase; PSI-II, structural geno	82.44
2hnl_A	225	Glutathione S-transferase 1; prostaglandin synthas	82.38
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	82.29
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	81.88
3lyk_A	216	Stringent starvation protein A homolog; structural	81.86
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	81.76
3l78_A	120	Regulatory protein SPX; transcription, transcripti	81.7
2v6k_A	214	Maleylpyruvate isomerase; glutathione-S-transferas	81.6
3ay8_A	216	Glutathione S-transferase; GST fold, GST binding,	81.42
1v2a_A	210	Glutathione transferase GST1-6; glutathione S-tran	81.37
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	81.34
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	81.33
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	81.24
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	81.19
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	81.08
1e6b_A	221	Glutathione S-transferase; 1.65A {Arabidopsis thal	81.08
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	81.0
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	80.83
1k0d_A	260	URE2 protein; nitrate assimilation, structural gen	80.8
4iel_A	229	Glutathione S-transferase, N-terminal domain PROT;	80.75
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	80.6
4id0_A	214	Glutathione S-transferase-like protein YIBF; GST,	80.5
3vk9_A	216	Glutathione S-transferase delta; glutathione bindi	80.48
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	80.47
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	80.28

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=96.36  E-value=0.0089  Score=40.89  Aligned_cols=77  Identities=16%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh----hHH-HhCCCChhcccceEEEEEeCCeEEehHHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY----SIE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFR  156 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~----~~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~  156 (206)
                      .+++||....||.|.+...+|.+...   .+.++++.....    ..+ +..|...-.. ..+-++.-||+.+.|++.+.
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~i---~~~~~~vd~~~~~~~~~el~~~~g~~~~~~-~~vP~i~i~g~~i~g~~~i~   79 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENNI---AFDETIIDDYAQRSKFYDEMNQSGKVIFPI-STVPQIFIDDEHIGGFTELK   79 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCSHHHHHHHHHHHHTTTCCSSCC-CSSCEEEETTEEEESHHHHH
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcCC---CceEEEeecCCChhHHHHHHHHhCCCCCCC-CccCEEEECCEEEeChHHHH
Confidence            45788888999999999999987643   466665544322    111 2223200000 12334445999999999999


Q ss_pred             HHHHHc
Q 028608          157 RLYEEV  162 (206)
Q Consensus       157 ~il~~l  162 (206)
                      .++..+
T Consensus        80 ~~~~~~   85 (89)
T 3msz_A           80 ANADKI   85 (89)
T ss_dssp             HTHHHH
T ss_pred             HHHHHH
Confidence            887753

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=96.26  E-value=0.01  Score=40.08  Aligned_cols=70  Identities=14%  Similarity=0.307  Sum_probs=47.6

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh--HH-HhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS--IE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~--~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il  159 (206)
                      ++++|+-.+||.|.+...+|.+..   -.+..+++..+...  .+ +..|.      ..+-++..+|+.+.|++++.++.
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~~~---i~~~~~~i~~~~~~~~~~~~~~~~------~~vP~l~~~g~~i~g~~~i~~~~   72 (82)
T 1fov_A            2 NVEIYTKETCPYCHRAKALLSSKG---VSFQELPIDGNAAKREEMIKRSGR------TTVPQIFIDAQHIGGYDDLYALD   72 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHT---CCCEEEECTTCSHHHHHHHHHHSS------CCSCEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEECCCChhHHHHHHHHHHCC---CCcEEEECCCCHHHHHHHHHHhCC------CCcCEEEECCEEEeCHHHHHHHH
Confidence            578888899999999999998864   35788888753221  11 12222      12223345999999999988776


Q ss_pred             HH
Q 028608          160 EE  161 (206)
Q Consensus       160 ~~  161 (206)
                      ..
T Consensus        73 ~~   74 (82)
T 1fov_A           73 AR   74 (82)
T ss_dssp             HT
T ss_pred             HC
Confidence            54

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=95.79  E-value=0.027  Score=39.98  Aligned_cols=75  Identities=15%  Similarity=0.338  Sum_probs=50.1

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh----hh-HH-HhCCCChhcccceEEEEEeCCeEEehHHH
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE----YS-IE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEA  154 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~----~~-~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA  154 (206)
                      ..++++|+=.+||.|.+...+|.+.......+.++++..+.    .. .+ +..|..      .+-.+.-+|+.+.|.+.
T Consensus        11 ~~~v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~------~vP~i~~~g~~i~g~~~   84 (105)
T 1kte_A           11 PGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGAR------TVPRVFIGKECIGGCTD   84 (105)
T ss_dssp             TTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCC------CSCEEEETTEEEESHHH
T ss_pred             cCCEEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCC------CcCeEEECCEEEeccHH
Confidence            44689999999999999999998875422338999987642    11 11 223331      12222348999999998


Q ss_pred             HHHHHHH
Q 028608          155 FRRLYEE  161 (206)
Q Consensus       155 ~~~il~~  161 (206)
                      +..+...
T Consensus        85 ~~~~~~~   91 (105)
T 1kte_A           85 LESMHKR   91 (105)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
Confidence            8776554

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=95.69  E-value=0.042  Score=38.03  Aligned_cols=71  Identities=18%  Similarity=0.300  Sum_probs=47.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-H-HhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL  158 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i  158 (206)
                      .++++|+-.+||.|.+...+|.+.+   -.+..+++..+... . + +..|.      ..+-++..+|+.+.|++++..+
T Consensus         6 ~~v~ly~~~~C~~C~~~~~~L~~~~---i~~~~~di~~~~~~~~~l~~~~~~------~~vP~l~~~g~~i~g~~~i~~~   76 (92)
T 2khp_A            6 VDVIIYTRPGCPYCARAKALLARKG---AEFNEIDASATPELRAEMQERSGR------NTFPQIFIGSVHVGGCDDLYAL   76 (92)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT---CCCEEEESTTSHHHHHHHHHHHTS------SCCCEEEETTEEEESHHHHHHH
T ss_pred             ccEEEEECCCChhHHHHHHHHHHcC---CCcEEEECCCCHHHHHHHHHHhCC------CCcCEEEECCEEEcCHHHHHHH
Confidence            4688889999999999999998764   35888898764321 1 1 12222      1122233589999999998776


Q ss_pred             HHH
Q 028608          159 YEE  161 (206)
Q Consensus       159 l~~  161 (206)
                      ...
T Consensus        77 ~~~   79 (92)
T 2khp_A           77 EDE   79 (92)
T ss_dssp             HTT
T ss_pred             HHc
Confidence            543

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=95.59  E-value=0.02  Score=39.65  Aligned_cols=70  Identities=17%  Similarity=0.273  Sum_probs=47.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-HH-HhC-CCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-IE-ENQ-GLDYKTVMGSIHAIVSDGTVVTDVEAFRRL  158 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~l-~~~-gld~e~~~~~lhvv~~dG~v~~G~dA~~~i  158 (206)
                      .++++|+-.+||.|.+...+|.+..   -.+..+++. +... .+ +.. |.      ..+-++..+|+.+.|++++.++
T Consensus         6 ~~v~~y~~~~C~~C~~~~~~L~~~~---i~~~~vdv~-~~~~~~l~~~~~~~------~~vP~l~~~g~~i~g~~~i~~~   75 (89)
T 2klx_A            6 KEIILYTRPNCPYCKRARDLLDKKG---VKYTDIDAS-TSLRQEMVQRANGR------NTFPQIFIGDYHVGGCDDLYAL   75 (89)
T ss_dssp             CCEEEESCSCCTTTHHHHHHHHHHT---CCEEEECSC-HHHHHHHHHHHHSS------CCSCEEEETTEECCSHHHHHHH
T ss_pred             ceEEEEECCCChhHHHHHHHHHHcC---CCcEEEECC-HHHHHHHHHHhCCC------CCcCEEEECCEEEeChHHHHHH
Confidence            4678888899999999999998864   358888887 2221 12 222 32      1122333599999999999887


Q ss_pred             HHH
Q 028608          159 YEE  161 (206)
Q Consensus       159 l~~  161 (206)
                      ...
T Consensus        76 ~~~   78 (89)
T 2klx_A           76 ENK   78 (89)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            665

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=95.55  E-value=0.069  Score=38.53  Aligned_cols=73  Identities=22%  Similarity=0.314  Sum_probs=51.4

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHh-C-CCChhcccceEEEEEeCCeEEehHHHH
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EEN-Q-GLDYKTVMGSIHAIVSDGTVVTDVEAF  155 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~-~-gld~e~~~~~lhvv~~dG~v~~G~dA~  155 (206)
                      ...+++||.-.+||+|.+...+|.++..   .+..+++..+....  +.. . |.      ..+-.+.-+|+.+.|++-+
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~i---~y~~idI~~~~~~~~~l~~~~~g~------~~vP~ifi~g~~igG~d~l   84 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRKGV---EFQEYCIDGDNEAREAMAARANGK------RSLPQIFIDDQHIGGCDDI   84 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHHTC---CCEEEECTTCHHHHHHHHHHTTTC------CCSCEEEETTEEEESHHHH
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHCCC---CCEEEEcCCCHHHHHHHHHHhCCC------CCCCEEEECCEEEeChHHH
Confidence            4467899999999999999999998753   57888887754321  211 1 22      1222344599999999988


Q ss_pred             HHHHHH
Q 028608          156 RRLYEE  161 (206)
Q Consensus       156 ~~il~~  161 (206)
                      ..+...
T Consensus        85 ~~~~~~   90 (99)
T 3qmx_A           85 YALDGA   90 (99)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            877654

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=95.37  E-value=0.042  Score=38.15  Aligned_cols=72  Identities=17%  Similarity=0.296  Sum_probs=45.4

Q ss_pred             ceEEEEcC----CChhhHHHHHHHHhhcccCCCEEEEeCC-----Chhh-hH-H-HhCCCChhcccceEEEEEe-CCeEE
Q 028608           83 KIKMLYDG----DCPLCMREVNMLKERNKQYGTIKFVDIS-----SDEY-SI-E-ENQGLDYKTVMGSIHAIVS-DGTVV  149 (206)
Q Consensus        83 ~l~VlYDG----~CplC~~~v~~L~r~d~~~~~I~fvdi~-----s~~~-~~-l-~~~gld~e~~~~~lhvv~~-dG~v~  149 (206)
                      +++||.=.    .||+|.+...+|.++.   -.+.++++.     .+.. .+ + +..|...-.. ..+-.+-- ||+.+
T Consensus         1 ~v~iY~~~~~~~~Cp~C~~ak~~L~~~g---i~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~-~tvP~v~i~~g~~i   76 (87)
T 1aba_A            1 MFKVYGYDSNIHKCGPCDNAKRLLTVKK---QPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIG-LTMPQVFAPDGSHI   76 (87)
T ss_dssp             CEEEEECCTTTSCCHHHHHHHHHHHHTT---CCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTT-CCSCEEECTTSCEE
T ss_pred             CEEEEEeCCCCCcCccHHHHHHHHHHcC---CCEEEEEeeccccccCHHHHHHHHHHhCCCCCCC-CccCEEEEECCEEE
Confidence            35677778    9999999999998864   358999998     3322 11 2 1223210000 02334444 89999


Q ss_pred             ehHHHHHHH
Q 028608          150 TDVEAFRRL  158 (206)
Q Consensus       150 ~G~dA~~~i  158 (206)
                      .|++-+.++
T Consensus        77 gG~d~l~~~   85 (87)
T 1aba_A           77 GGFDQLREY   85 (87)
T ss_dssp             ESHHHHHHH
T ss_pred             eCHHHHHHh
Confidence            999987765

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=95.35  E-value=0.2  Score=36.08  Aligned_cols=77  Identities=13%  Similarity=0.174  Sum_probs=46.5

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCC--ChhhhH-HHhCCCChhcccceEEEEEeCCeE---Eeh---
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDIS--SDEYSI-EENQGLDYKTVMGSIHAIVSDGTV---VTD---  151 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~--s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v---~~G---  151 (206)
                      .-++.||..+|+.|......+.+..... +.+.|+.+.  .+.... .+.+|+..  . =.+.+++.+|++   +.|   
T Consensus        28 ~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~--~-Pt~~~~~~~G~~~~~~~G~~~  104 (126)
T 2l57_A           28 PTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANI--V-PTTVFLDKEGNKFYVHQGLMR  104 (126)
T ss_dssp             CEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCS--S-SEEEEECTTCCEEEEEESCCC
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcc--e-eEEEEECCCCCEEEEecCCCC
Confidence            4578889999999999998887653212 457776665  443332 34566531  1 134466668885   445   


Q ss_pred             HHHHHHHHHH
Q 028608          152 VEAFRRLYEE  161 (206)
Q Consensus       152 ~dA~~~il~~  161 (206)
                      .+.+...+..
T Consensus       105 ~~~l~~~l~~  114 (126)
T 2l57_A          105 KNNIETILNS  114 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3445555444

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.12  E-value=0.0058  Score=46.27  Aligned_cols=71  Identities=18%  Similarity=0.287  Sum_probs=48.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh---hh-h-HH-HhCCCChhcccceEEEEEeCCeEEehHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD---EY-S-IE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAF  155 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~---~~-~-~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~  155 (206)
                      .+++||+-.+||.|.+...+|.++..   .+.++++...   .. . .+ +..|+.  .    +-.+..+|+.+.|.+.+
T Consensus        27 ~~vvvf~~~~Cp~C~~~~~~L~~~~i---~~~~vdid~~~~~~~~~~~l~~~~g~~--~----vP~l~i~G~~igg~~~l   97 (130)
T 2cq9_A           27 NCVVIFSKTSCSYCTMAKKLFHDMNV---NYKVVELDLLEYGNQFQDALYKMTGER--T----VPRIFVNGTFIGGATDT   97 (130)
T ss_dssp             SSEEEEECSSCSHHHHHHHHHHHHTC---CCEEEETTTSTTHHHHHHHHHHHHSSC--C----SSEEEETTEEEEEHHHH
T ss_pred             CcEEEEEcCCChHHHHHHHHHHHcCC---CcEEEECcCCcCcHHHHHHHHHHhCCC--C----cCEEEECCEEEcChHHH
Confidence            46899999999999999999988753   5788888754   11 1 11 223331  1    11223489999999988


Q ss_pred             HHHHHH
Q 028608          156 RRLYEE  161 (206)
Q Consensus       156 ~~il~~  161 (206)
                      ..+...
T Consensus        98 ~~~~~~  103 (130)
T 2cq9_A           98 HRLHKE  103 (130)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            776654

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=95.12  E-value=0.034  Score=40.67  Aligned_cols=75  Identities=20%  Similarity=0.302  Sum_probs=48.0

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh----h-hHH-HhCCCChhcccceEEEEEeCCeEEehHH
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE----Y-SIE-ENQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~----~-~~l-~~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      ...++++|+-.+||.|.+...+|.+.....+.+..+++..+.    . ..+ +..|..  ..    -.+.-+|+.+.|.+
T Consensus        17 ~~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~--~v----P~v~i~g~~igg~~   90 (114)
T 2hze_A           17 ANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGK--TV----PRIFFGKTSIGGYS   90 (114)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCC--SS----CEEEETTEEEESHH
T ss_pred             ccCCEEEEEeCCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCC--Cc----CEEEECCEEEeCcH
Confidence            345789999999999999999998764321238889987642    1 112 233431  11    12223899999998


Q ss_pred             HHHHHHH
Q 028608          154 AFRRLYE  160 (206)
Q Consensus       154 A~~~il~  160 (206)
                      -+..+..
T Consensus        91 ~~~~~~~   97 (114)
T 2hze_A           91 DLLEIDN   97 (114)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665443

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=94.96  E-value=0.13  Score=36.70  Aligned_cols=39  Identities=15%  Similarity=0.347  Sum_probs=28.0

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS  119 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s  119 (206)
                      ..-++.||..+|+.|......+.+.......+.++.+..
T Consensus        26 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~   64 (136)
T 1zzo_A           26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAG   64 (136)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeC
Confidence            346788999999999999988877643233566665543

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=94.89  E-value=0.12  Score=37.20  Aligned_cols=38  Identities=21%  Similarity=0.398  Sum_probs=27.4

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      ..-++.||..+|+.|......+.+.-.....+.++.++
T Consensus        25 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~   62 (136)
T 1lu4_A           25 KPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIA   62 (136)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEE
Confidence            34678899999999999998887764323356666554

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=94.86  E-value=0.043  Score=40.23  Aligned_cols=73  Identities=15%  Similarity=0.209  Sum_probs=47.8

Q ss_pred             CCCceEEEEcC-----CChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HH-hCCCChhcccceEEEEEeCCeEEeh
Q 028608           80 ENWKIKMLYDG-----DCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EE-NQGLDYKTVMGSIHAIVSDGTVVTD  151 (206)
Q Consensus        80 ~~~~l~VlYDG-----~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~-~~gld~e~~~~~lhvv~~dG~v~~G  151 (206)
                      .+.+++||--+     .||+|.+..++|.++..   .+..+++..+... . +. ..|.      ..+-.+--+|+.+.|
T Consensus        16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi---~~~~~dI~~~~~~~~~l~~~~g~------~tvP~ifi~g~~iGG   86 (109)
T 3ipz_A           16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNV---PFEDVNILENEMLRQGLKEYSNW------PTFPQLYIGGEFFGG   86 (109)
T ss_dssp             TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTC---CCEEEEGGGCHHHHHHHHHHHTC------SSSCEEEETTEEEEC
T ss_pred             ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCC---CcEEEECCCCHHHHHHHHHHHCC------CCCCeEEECCEEEeC
Confidence            44566666666     89999999999988753   5788888644322 1 21 1121      112234459999999


Q ss_pred             HHHHHHHHHH
Q 028608          152 VEAFRRLYEE  161 (206)
Q Consensus       152 ~dA~~~il~~  161 (206)
                      .+-+.++...
T Consensus        87 ~d~l~~l~~~   96 (109)
T 3ipz_A           87 CDITLEAFKT   96 (109)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9988887654

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=94.73  E-value=0.037  Score=41.05  Aligned_cols=73  Identities=14%  Similarity=0.261  Sum_probs=48.0

Q ss_pred             ceEEEEcCCChhhHHH-HHHHHhhcccCCCEEEEeCCChhh-----hHH-HhCCCChhcccceEEEEEeCCeEEehHHHH
Q 028608           83 KIKMLYDGDCPLCMRE-VNMLKERNKQYGTIKFVDISSDEY-----SIE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAF  155 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~-v~~L~r~d~~~~~I~fvdi~s~~~-----~~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~  155 (206)
                      +++||+-.+||.|.+. ..+|.+.....-.+..+++..+..     ..+ +..|..      .+-.+.-+|+.+.|.+-+
T Consensus        26 ~Vvvf~~~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~------tvP~vfi~g~~igG~d~l   99 (118)
T 3c1r_A           26 EIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQR------TVPNIYINGKHIGGNDDL   99 (118)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCC------SSCEEEETTEEEESHHHH
T ss_pred             cEEEEEcCCCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCC------CcCEEEECCEEEEcHHHH
Confidence            5789999999999999 888876541013577788875421     112 223431      122334599999999988


Q ss_pred             HHHHHH
Q 028608          156 RRLYEE  161 (206)
Q Consensus       156 ~~il~~  161 (206)
                      ..+...
T Consensus       100 ~~l~~~  105 (118)
T 3c1r_A          100 QELRET  105 (118)
T ss_dssp             HHHHHH
T ss_pred             HHHHHC
Confidence            887654

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=94.69  E-value=0.13  Score=37.33  Aligned_cols=74  Identities=12%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             CCCCceEEEEc-----CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HH-hCCCChhcccceEEEEEeCCeEEe
Q 028608           79 PENWKIKMLYD-----GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EE-NQGLDYKTVMGSIHAIVSDGTVVT  150 (206)
Q Consensus        79 ~~~~~l~VlYD-----G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~-~~gld~e~~~~~lhvv~~dG~v~~  150 (206)
                      ....+++||+-     ..||+|.+...+|.++.   -.+..+++..+... . +. ..|.      ..+-++.-+|+.+.
T Consensus        12 i~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~---i~~~~vdi~~~~~~~~~l~~~~g~------~~vP~ifi~g~~ig   82 (109)
T 1wik_A           12 TNKASVMLFMKGNKQEAKCGFSKQILEILNSTG---VEYETFDILEDEEVRQGLKTFSNW------PTYPQLYVRGDLVG   82 (109)
T ss_dssp             HTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTC---SCEEEEESSSCHHHHHHHHHHHSC------CSSCEEECSSSEEE
T ss_pred             hccCCEEEEEecCCCCCCCchHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHhCC------CCCCEEEECCEEEc
Confidence            34557888888     79999999999998874   35888899765321 1 11 2222      12223446899999


Q ss_pred             hHHHHHHHHHH
Q 028608          151 DVEAFRRLYEE  161 (206)
Q Consensus       151 G~dA~~~il~~  161 (206)
                      |.+-+..+...
T Consensus        83 G~d~l~~l~~~   93 (109)
T 1wik_A           83 GLDIVKELKDN   93 (109)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHC
Confidence            99987777654

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=94.67  E-value=0.091  Score=37.75  Aligned_cols=71  Identities=14%  Similarity=0.233  Sum_probs=47.3

Q ss_pred             CCceEEEEc-----CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--H-HhCCCChhcccceEEEEEeCCeEEehH
Q 028608           81 NWKIKMLYD-----GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--E-ENQGLDYKTVMGSIHAIVSDGTVVTDV  152 (206)
Q Consensus        81 ~~~l~VlYD-----G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l-~~~gld~e~~~~~lhvv~~dG~v~~G~  152 (206)
                      ..+++||+-     .+||.|.+...+|.++..   .+..+++..+....  + ...|..      .+-.+.-+|+.+.|.
T Consensus        16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i---~~~~vdi~~~~~~~~~l~~~~g~~------~vP~v~i~g~~igg~   86 (105)
T 2yan_A           16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGV---EYETFDILEDEEVRQGLKAYSNWP------TYPQLYVKGELVGGL   86 (105)
T ss_dssp             SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTC---CCEEEEGGGCHHHHHHHHHHHTCC------SSCEEEETTEEEECH
T ss_pred             cCCEEEEEecCCCCCCCccHHHHHHHHHHCCC---CeEEEECCCCHHHHHHHHHHHCCC------CCCeEEECCEEEeCh
Confidence            345788877     899999999999988753   57788886543211  1 112321      122333599999999


Q ss_pred             HHHHHHHH
Q 028608          153 EAFRRLYE  160 (206)
Q Consensus       153 dA~~~il~  160 (206)
                      +-+..+..
T Consensus        87 d~~~~l~~   94 (105)
T 2yan_A           87 DIVKELKE   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887654

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=94.49  E-value=0.23  Score=37.37  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s  119 (206)
                      .-++.||..+|+.|......|.+.......+.++.+..
T Consensus        39 ~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~   76 (165)
T 3ha9_A           39 VVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDF   76 (165)
T ss_dssp             EEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             EEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEe
Confidence            45677999999999999999887754334677776643

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=94.49  E-value=0.13  Score=33.70  Aligned_cols=62  Identities=19%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      ++++|+..+||.|.+...+|.+.+   -.+..+++..+....  ++..|+.      .+-++..+|+.+.|.+
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~~~---i~~~~~di~~~~~~~~~~~~~~~~------~vP~l~~~g~~~~g~~   65 (75)
T 1r7h_A            2 SITLYTKPACVQCTATKKALDRAG---LAYNTVDISLDDEARDYVMALGYV------QAPVVEVDGEHWSGFR   65 (75)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTT---CCCEEEETTTCHHHHHHHHHTTCB------CCCEEEETTEEEESCC
T ss_pred             eEEEEeCCCChHHHHHHHHHHHcC---CCcEEEECCCCHHHHHHHHHcCCC------ccCEEEECCeEEcCCC
Confidence            478899999999999999998764   357888888653221  2233331      1223334888887765

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=94.27  E-value=0.1  Score=39.11  Aligned_cols=75  Identities=7%  Similarity=0.140  Sum_probs=48.2

Q ss_pred             CCceEEEEcC-----CChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HH-hCCCChhcccceEEEEEeCCeEEehH
Q 028608           81 NWKIKMLYDG-----DCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EE-NQGLDYKTVMGSIHAIVSDGTVVTDV  152 (206)
Q Consensus        81 ~~~l~VlYDG-----~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~-~~gld~e~~~~~lhvv~~dG~v~~G~  152 (206)
                      +.+++||-=+     .||+|.+..++|.++......+..+++..+... . +. ..|-      ..+-.+--+|+.+.|.
T Consensus        15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~------~tvP~vfI~g~~iGG~   88 (121)
T 3gx8_A           15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEW------PTIPQLYVNKEFIGGC   88 (121)
T ss_dssp             SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTC------CSSCEEEETTEEEESH
T ss_pred             cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCC------CCCCeEEECCEEEecH
Confidence            3455555555     899999999999887542123888888765322 1 21 1121      1232344599999999


Q ss_pred             HHHHHHHHH
Q 028608          153 EAFRRLYEE  161 (206)
Q Consensus       153 dA~~~il~~  161 (206)
                      +-+..+...
T Consensus        89 d~l~~l~~~   97 (121)
T 3gx8_A           89 DVITSMARS   97 (121)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            988887764

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=94.26  E-value=0.053  Score=41.08  Aligned_cols=73  Identities=12%  Similarity=0.214  Sum_probs=48.2

Q ss_pred             CceEEEEcCCChhhHHH-HHHHHhhcccCCCEEEEeCCChhh-----hHH-HhCCCChhcccceEEEEEeCCeEEehHHH
Q 028608           82 WKIKMLYDGDCPLCMRE-VNMLKERNKQYGTIKFVDISSDEY-----SIE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEA  154 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~-v~~L~r~d~~~~~I~fvdi~s~~~-----~~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA  154 (206)
                      .+++||+=.+||+|.+. ..+|.+.....-.+.++++..+..     ..+ +..|.      ..+-.+.-+|+.+.|.+-
T Consensus        37 ~~Vvvy~~~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~------~tVP~vfi~g~~igG~d~  110 (129)
T 3ctg_A           37 KEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQ------KTVPNVYINGKHIGGNSD  110 (129)
T ss_dssp             SSEEEEECTTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSC------CSSCEEEETTEEEESHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCC------CCCCEEEECCEEEcCHHH
Confidence            35799999999999999 888877641113578888875421     112 22332      122234459999999998


Q ss_pred             HHHHHH
Q 028608          155 FRRLYE  160 (206)
Q Consensus       155 ~~~il~  160 (206)
                      +..+..
T Consensus       111 l~~l~~  116 (129)
T 3ctg_A          111 LETLKK  116 (129)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=94.22  E-value=0.25  Score=35.50  Aligned_cols=72  Identities=15%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HHh--CCCChhcccceEE-EEEeCCeEEehH--HH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EEN--QGLDYKTVMGSIH-AIVSDGTVVTDV--EA  154 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~~--~gld~e~~~~~lh-vv~~dG~v~~G~--dA  154 (206)
                      .+++||-=.+||+|.+..++|.++.   -.+..+++..+... + ...  .|.      +.+- ++..||++..|.  +.
T Consensus         4 a~I~vYs~~~Cp~C~~aK~~L~~~g---i~y~~idi~~d~~~~~~~~~~~~G~------~tVP~I~i~Dg~~l~~~~~~e   74 (92)
T 2lqo_A            4 AALTIYTTSWCGYCLRLKTALTANR---IAYDEVDIEHNRAAAEFVGSVNGGN------RTVPTVKFADGSTLTNPSADE   74 (92)
T ss_dssp             SCEEEEECTTCSSHHHHHHHHHHTT---CCCEEEETTTCHHHHHHHHHHSSSS------SCSCEEEETTSCEEESCCHHH
T ss_pred             CcEEEEcCCCCHhHHHHHHHHHhcC---CceEEEEcCCCHHHHHHHHHHcCCC------CEeCEEEEeCCEEEeCCCHHH
Confidence            4678888999999999999998864   36889999865432 1 111  121      1122 334789998884  44


Q ss_pred             HHHHHHHc
Q 028608          155 FRRLYEEV  162 (206)
Q Consensus       155 ~~~il~~l  162 (206)
                      +.+.+..+
T Consensus        75 l~~~L~el   82 (92)
T 2lqo_A           75 VKAKLVKI   82 (92)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            44444443

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=94.17  E-value=0.14  Score=37.28  Aligned_cols=38  Identities=13%  Similarity=0.316  Sum_probs=26.6

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDIS  118 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~  118 (206)
                      ..-++.||..+|+.|......+.+.... .+.+.++.+.
T Consensus        30 k~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~   68 (148)
T 2b5x_A           30 KPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVH   68 (148)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             CEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEE
Confidence            3467889999999999998887765321 1226666554

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=94.13  E-value=0.13  Score=37.59  Aligned_cols=73  Identities=11%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh-h-h--H-H-HhCCCChhcccceEEEEEeCCeEEehHH
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE-Y-S--I-E-ENQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~-~-~--~-l-~~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      ++.+++||.-.+||+|.+...+|.++.   -.+..+++.... . .  . + +..|.      ..+-.+--+|+.+.|.+
T Consensus        15 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~---i~~~~~dvd~~~~~~~~~~~l~~~~g~------~tvP~vfi~g~~igG~d   85 (114)
T 3h8q_A           15 ERSRVVIFSKSYCPHSTRVKELFSSLG---VECNVLELDQVDDGARVQEVLSEITNQ------KTVPNIFVNKVHVGGCD   85 (114)
T ss_dssp             HHCSEEEEECTTCHHHHHHHHHHHHTT---CCCEEEETTTSTTHHHHHHHHHHHHSC------CSSCEEEETTEEEESHH
T ss_pred             ccCCEEEEEcCCCCcHHHHHHHHHHcC---CCcEEEEecCCCChHHHHHHHHHHhCC------CccCEEEECCEEEeCHH
Confidence            345689999999999999999998874   357888887421 1 1  1 1 12222      12323345999999999


Q ss_pred             HHHHHHHH
Q 028608          154 AFRRLYEE  161 (206)
Q Consensus       154 A~~~il~~  161 (206)
                      -+.++...
T Consensus        86 ~l~~l~~~   93 (114)
T 3h8q_A           86 QTFQAYQS   93 (114)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHC
Confidence            88887654

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=94.09  E-value=0.11  Score=38.72  Aligned_cols=38  Identities=13%  Similarity=0.314  Sum_probs=26.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s  119 (206)
                      .-++.||..+|+.|..+...+.+.-.  ....+.++.++.
T Consensus        31 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~   70 (152)
T 2lrn_A           31 YVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVST   70 (152)
T ss_dssp             EEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEEC
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEc
Confidence            45788999999999998887766521  122366665543

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=93.91  E-value=0.11  Score=37.53  Aligned_cols=72  Identities=11%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh---hhh--H-HH-hCCCChhcccceEEEEEeCCeEEehHH
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD---EYS--I-EE-NQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~---~~~--~-l~-~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      ..+++||.-.+||.|.+...+|.++.   -.+..+++...   ...  . +. ..|.      ..+-.+.-+|+.+.|.+
T Consensus        18 ~~~v~vy~~~~Cp~C~~~~~~L~~~~---i~~~~~di~~~~~~~~~~~~~l~~~~g~------~tvP~ifi~g~~igG~~   88 (113)
T 3rhb_A           18 ENTVVIYSKTWCSYCTEVKTLFKRLG---VQPLVVELDQLGPQGPQLQKVLERLTGQ------HTVPNVFVCGKHIGGCT   88 (113)
T ss_dssp             HSSEEEEECTTCHHHHHHHHHHHHTT---CCCEEEEGGGSTTHHHHHHHHHHHHHSC------CSSCEEEETTEEEESHH
T ss_pred             cCCEEEEECCCChhHHHHHHHHHHcC---CCCeEEEeecCCCChHHHHHHHHHHhCC------CCcCEEEECCEEEcCcH
Confidence            34589999999999999999998874   35778888652   111  1 21 1232      12323445999999999


Q ss_pred             HHHHHHHH
Q 028608          154 AFRRLYEE  161 (206)
Q Consensus       154 A~~~il~~  161 (206)
                      -+..+...
T Consensus        89 ~~~~~~~~   96 (113)
T 3rhb_A           89 DTVKLNRK   96 (113)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            88877654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=93.83  E-value=0.17  Score=33.76  Aligned_cols=62  Identities=11%  Similarity=0.283  Sum_probs=40.8

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EENQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      ++++|+..+||.|.....+|.+.+   -.+..+++..+... . +...|+.      .+-++..+|+.+.|.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~~~---i~~~~vdi~~~~~~~~~~~~~g~~------~vP~~~~~g~~~~g~~   65 (81)
T 1h75_A            2 RITIYTRNDCVQCHATKRAMENRG---FDFEMINVDRVPEAAEALRAQGFR------QLPVVIAGDLSWSGFR   65 (81)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTT---CCCEEEETTTCHHHHHHHHHTTCC------SSCEEEETTEEEESCC
T ss_pred             EEEEEcCCCChhHHHHHHHHHHCC---CCeEEEECCCCHHHHHHHHHhCCC------ccCEEEECCEEEecCC
Confidence            478899999999999999998764   35788888764321 1 2224432      1222234888877765

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=93.73  E-value=0.21  Score=33.50  Aligned_cols=75  Identities=17%  Similarity=0.345  Sum_probs=44.0

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhh--hH-HHhCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEY--SI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR  157 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~~--~~-l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~  157 (206)
                      ++++|+-.+||.|.....+|.+....  .-.+..+++..+..  .. .+..|.....    +-.+.-+|+.+.|.+.+..
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~----vP~i~~~g~~i~~~~~l~~   77 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVET----VPQIFVDQQHIGGYTDFAA   77 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCC----SCEEEETTEEEESSHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCce----eCeEEECCEEEECHHHHHH
Confidence            46788889999999999999875321  12344455543221  11 2234411111    2223348999999887777


Q ss_pred             HHHH
Q 028608          158 LYEE  161 (206)
Q Consensus       158 il~~  161 (206)
                      ++..
T Consensus        78 ~~~~   81 (85)
T 1ego_A           78 WVKE   81 (85)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=93.73  E-value=0.11  Score=40.16  Aligned_cols=72  Identities=17%  Similarity=0.278  Sum_probs=48.0

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh---hh-h-HH-HhCCCChhcccceEEEEEeCCeEEehHH
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD---EY-S-IE-ENQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~---~~-~-~l-~~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      ...+++||+..+||.|.....+|.+...   .+..+++...   .. . .+ +..|+.  .    +-.+..+|+.+.|.+
T Consensus        47 ~~~~Vvvf~~~~Cp~C~~~k~~L~~~~i---~~~~vdId~~~~~~~~~~~L~~~~g~~--t----vP~ifi~G~~igG~d  117 (146)
T 2ht9_A           47 SDNCVVIFSKTSCSYCTMAKKLFHDMNV---NYKVVELDLLEYGNQFQDALYKMTGER--T----VPRIFVNGTFIGGAT  117 (146)
T ss_dssp             HHCSEEEEECTTCHHHHHHHHHHHHHTC---CCEEEEGGGCTTHHHHHHHHHHHHSCC--C----SCEEEETTEEEESHH
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHcCC---CeEEEECccCcCCHHHHHHHHHHhCCC--C----cCeEEECCEEEeCch
Confidence            3457899999999999999999988753   5777887643   11 1 11 233431  1    122234999999998


Q ss_pred             HHHHHHH
Q 028608          154 AFRRLYE  160 (206)
Q Consensus       154 A~~~il~  160 (206)
                      .+..+..
T Consensus       118 ~l~~l~~  124 (146)
T 2ht9_A          118 DTHRLHK  124 (146)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776544

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=93.69  E-value=0.34  Score=34.21  Aligned_cols=36  Identities=11%  Similarity=0.204  Sum_probs=27.3

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDI  117 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi  117 (206)
                      .-++.||..+|+.|......+.+.... ...+.++.+
T Consensus        24 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i   60 (138)
T 4evm_A           24 KVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTV   60 (138)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEE
T ss_pred             EEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            356779999999999999988776431 346777776

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=93.67  E-value=0.16  Score=36.74  Aligned_cols=38  Identities=18%  Similarity=0.387  Sum_probs=28.4

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccC--CCEEEEeCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQY--GTIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~--~~I~fvdi~s  119 (206)
                      .-+++||..+|+.|......+.+.....  ..+.++.+..
T Consensus        36 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~   75 (145)
T 3erw_A           36 KTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNL   75 (145)
T ss_dssp             EEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEEC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEc
Confidence            4578899999999999988887763322  3688877754

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=93.40  E-value=0.097  Score=38.86  Aligned_cols=37  Identities=11%  Similarity=0.199  Sum_probs=26.2

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDI  117 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi  117 (206)
                      ..-++.||..+|+.|......+.+.-... -.+-.+++
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~   68 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISR   68 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            45678899999999999998887764322 23444444

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=93.35  E-value=0.48  Score=33.68  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=40.5

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE---EehH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV---VTDV  152 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v---~~G~  152 (206)
                      .-++.||..+|+.|......+.+.......+.|+.+.-+.... .+.+|+..  .= .+ ++..+|++   +.|.
T Consensus        36 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~P-t~-~~~~~G~~~~~~~G~  106 (122)
T 2vlu_A           36 LVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEA--MP-TF-LFMKEGDVKDRVVGA  106 (122)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--SS-EE-EEEETTEEEEEEESS
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCc--cc-EE-EEEeCCEEEEEEeCc
Confidence            4578999999999999998887654323336666554433222 34566531  11 23 34478885   4553

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=93.23  E-value=0.2  Score=35.72  Aligned_cols=68  Identities=16%  Similarity=0.226  Sum_probs=45.0

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh-----hH-HHhCCCChhcccceEEEEEeCCeEEehHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY-----SI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAF  155 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~-----~~-l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~  155 (206)
                      ..++|||-.+||.|......|.+...   .+.++++..+..     .. ...+|+.  ..= .+   ..+|+...|.+.+
T Consensus        20 ~~vv~f~a~~C~~C~~~~~~l~~~~~---~~~~v~v~~~~~~~~~~~~l~~~~~v~--~~P-t~---~~~g~~v~~~~~~   90 (116)
T 2e7p_A           20 APVVVFSKTYCGYCNRVKQLLTQVGA---SYKVVELDELSDGSQLQSALAHWTGRG--TVP-NV---FIGGKQIGGCDTV   90 (116)
T ss_dssp             SSEEEEECTTCHHHHHHHHHHHHHTC---CCEEEEGGGSTTHHHHHHHHHHHHSCC--SSC-EE---EETTEEEECHHHH
T ss_pred             CCEEEEECCCChhHHHHHHHHHHcCC---CeEEEEccCCCChHHHHHHHHHHhCCC--CcC-EE---EECCEEECChHHH
Confidence            35788999999999999999988753   467888765432     11 2334442  111 12   2489999888776


Q ss_pred             HHH
Q 028608          156 RRL  158 (206)
Q Consensus       156 ~~i  158 (206)
                      ..+
T Consensus        91 ~~~   93 (116)
T 2e7p_A           91 VEK   93 (116)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=93.14  E-value=0.79  Score=31.94  Aligned_cols=73  Identities=18%  Similarity=0.108  Sum_probs=49.6

Q ss_pred             CceEEEEcCCChhh------HHHHHHHHhhcccCCCEEEEeCCChhhh-H-H-HhCCCChhcccceEEEEEeCCeEEehH
Q 028608           82 WKIKMLYDGDCPLC------MREVNMLKERNKQYGTIKFVDISSDEYS-I-E-ENQGLDYKTVMGSIHAIVSDGTVVTDV  152 (206)
Q Consensus        82 ~~l~VlYDG~CplC------~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l-~~~gld~e~~~~~lhvv~~dG~v~~G~  152 (206)
                      .+++||.=..||+|      .+..++|.++.   -.+..+|+..+... . + +..|-+.    ..+-.+--+|+.+.|.
T Consensus         2 ~~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~---i~~~~~di~~~~~~~~~l~~~~g~~~----~~vP~ifi~g~~igG~   74 (93)
T 1t1v_A            2 SGLRVYSTSVTGSREIKSQQSEVTRILDGKR---IQYQLVDISQDNALRDEMRTLAGNPK----ATPPQIVNGNHYCGDY   74 (93)
T ss_dssp             CCEEEEECSSCSCHHHHHHHHHHHHHHHHTT---CCCEEEETTSCHHHHHHHHHHTTCTT----CCSCEEEETTEEEEEH
T ss_pred             CCEEEEEcCCCCCchhhHHHHHHHHHHHHCC---CceEEEECCCCHHHHHHHHHHhCCCC----CCCCEEEECCEEEeCH
Confidence            36788999999999      88888988764   35888899765322 1 2 2233211    1233445699999999


Q ss_pred             HHHHHHHHH
Q 028608          153 EAFRRLYEE  161 (206)
Q Consensus       153 dA~~~il~~  161 (206)
                      +.+..+...
T Consensus        75 d~l~~l~~~   83 (93)
T 1t1v_A           75 ELFVEAVEQ   83 (93)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            998887653

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=93.06  E-value=0.14  Score=37.70  Aligned_cols=73  Identities=15%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             CCCceEEEEc-----CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HH-hCCCChhcccceEEEEEeCCeEEeh
Q 028608           80 ENWKIKMLYD-----GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EE-NQGLDYKTVMGSIHAIVSDGTVVTD  151 (206)
Q Consensus        80 ~~~~l~VlYD-----G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~-~~gld~e~~~~~lhvv~~dG~v~~G  151 (206)
                      .+.+++||-=     ..||+|.+..++|.++..   .+..+|+..+... . +. ..|.      ..+-.+--+|+.+.|
T Consensus        14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi---~y~~~di~~d~~~~~~l~~~~g~------~tvP~ifi~g~~iGG   84 (111)
T 3zyw_A           14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNI---QFSSFDIFSDEEVRQGLKAYSSW------PTYPQLYVSGELIGG   84 (111)
T ss_dssp             TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTC---CCEEEEGGGCHHHHHHHHHHHTC------CSSCEEEETTEEEEC
T ss_pred             hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCC---CeEEEECcCCHHHHHHHHHHHCC------CCCCEEEECCEEEec
Confidence            3445566655     799999999999988743   5778888754322 1 21 1121      123344569999999


Q ss_pred             HHHHHHHHHH
Q 028608          152 VEAFRRLYEE  161 (206)
Q Consensus       152 ~dA~~~il~~  161 (206)
                      .+-+.++...
T Consensus        85 ~d~l~~l~~~   94 (111)
T 3zyw_A           85 LDIIKELEAS   94 (111)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
Confidence            9988877654

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=93.01  E-value=0.31  Score=35.57  Aligned_cols=64  Identities=11%  Similarity=0.265  Sum_probs=40.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      .-++.||..+|+.|......+.+.......+.|+.+..+.... .+.+|+..  .= .+ ++..+|++.
T Consensus        40 ~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~--~P-t~-~~~~~G~~~  104 (124)
T 1xfl_A           40 LVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQA--MP-TF-MFLKEGKIL  104 (124)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCS--SS-EE-EEEETTEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCc--cC-EE-EEEECCEEE
Confidence            3468899999999999999887764334467777665543332 34566531  11 23 344788853

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=93.01  E-value=0.22  Score=35.87  Aligned_cols=67  Identities=16%  Similarity=0.260  Sum_probs=40.6

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE---EehHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV---VTDVE  153 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v---~~G~d  153 (206)
                      -++.||..+|+.|......+.+.......+.|+.+..+.... .+.+++..  .= .+ ++..+|++   +.|..
T Consensus        33 vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~P-t~-~~~~~G~~~~~~~G~~  103 (114)
T 2oe3_A           33 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTA--MP-TF-VLGKDGQLIGKIIGAN  103 (114)
T ss_dssp             EEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--BS-EE-EEEETTEEEEEEESSC
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCc--cc-EE-EEEeCCeEEEEEeCCC
Confidence            468899999999999998887763323336665554333222 34555532  21 23 34578886   56654

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=92.96  E-value=0.15  Score=37.17  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=38.4

Q ss_pred             ceEEEEcCCChhhHHHHHHHH--hhcccC-CCEEEEeCCC---hhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           83 KIKMLYDGDCPLCMREVNMLK--ERNKQY-GTIKFVDISS---DEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~--r~d~~~-~~I~fvdi~s---~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      -++.||-.+|+-|......+.  +..... +.+.++.+.-   +.... ...+|++.....=.+.+++.+|++.
T Consensus        32 vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           32 TLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             EEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred             EEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEE
Confidence            468899999999999888776  332101 2355544332   22222 3566663222222355677899865

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=92.92  E-value=0.37  Score=39.20  Aligned_cols=72  Identities=11%  Similarity=0.313  Sum_probs=49.1

Q ss_pred             CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh-hHH-HhCCCChhcccceEEEEEeCCeEEehHHHHH
Q 028608           79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY-SIE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFR  156 (206)
Q Consensus        79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~-~~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~  156 (206)
                      ....+++||.-..||+|.+...+|.++.   -.+..+++..+.. ..+ +..|.      ..+-++.-+|+.+.|++.+.
T Consensus       167 i~~~~i~ly~~~~Cp~C~~a~~~L~~~~---i~~~~~~i~~~~~~~~l~~~~g~------~~vP~~~~~g~~i~g~~~i~  237 (241)
T 1nm3_A          167 QVQESISIFTKPGCPFCAKAKQLLHDKG---LSFEEIILGHDATIVSVRAVSGR------TTVPQVFIGGKHIGGSDDLE  237 (241)
T ss_dssp             CCCCCEEEEECSSCHHHHHHHHHHHHHT---CCCEEEETTTTCCHHHHHHHTCC------SSSCEEEETTEEEESHHHHH
T ss_pred             cccceEEEEECCCChHHHHHHHHHHHcC---CceEEEECCCchHHHHHHHHhCC------CCcCEEEECCEEEECHHHHH
Confidence            3456789999999999999999998874   3578888876432 122 22332      11223345899999999887


Q ss_pred             HHH
Q 028608          157 RLY  159 (206)
Q Consensus       157 ~il  159 (206)
                      +.+
T Consensus       238 ~~l  240 (241)
T 1nm3_A          238 KYF  240 (241)
T ss_dssp             HC-
T ss_pred             HHh
Confidence            643

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=92.90  E-value=0.28  Score=36.21  Aligned_cols=37  Identities=14%  Similarity=0.283  Sum_probs=25.3

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~  118 (206)
                      .-++.||..+|+.|......+.+.-..  ...+.++.+.
T Consensus        28 ~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~   66 (151)
T 2f9s_A           28 GVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVN   66 (151)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEE
Confidence            457788999999999998887665221  1236655543

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=92.87  E-value=0.68  Score=31.25  Aligned_cols=63  Identities=17%  Similarity=0.305  Sum_probs=38.1

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.......+.|+.+..+.... ...+++..  .= .+.++ .+|+.
T Consensus        18 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~P-t~~~~-~~g~~   81 (104)
T 2e0q_A           18 IAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMS--LP-TVIFF-KDGEP   81 (104)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--SC-EEEEE-ETTEE
T ss_pred             cEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccc--cC-EEEEE-ECCeE
Confidence            3568889999999999998887664322336666555433322 34566532  11 23244 78885

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=92.80  E-value=0.27  Score=36.87  Aligned_cols=40  Identities=15%  Similarity=0.374  Sum_probs=28.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChh
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDE  121 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~  121 (206)
                      .-++.||-.+|+.|......|.+.-..  ...+.++.++.+.
T Consensus        43 ~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~   84 (158)
T 3hdc_A           43 IVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK   84 (158)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS
T ss_pred             EEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH
Confidence            356778999999999988888766321  2468887766543

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=92.69  E-value=0.29  Score=34.19  Aligned_cols=64  Identities=17%  Similarity=0.280  Sum_probs=38.2

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ..-++.||..+|+.|......+.+..... +.+.|+.+..+.... .+.+|+..  .= .+ ++..+|++
T Consensus        24 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~P-t~-~~~~~G~~   89 (112)
T 1t00_A           24 KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMS--IP-TL-NVYQGGEV   89 (112)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--SS-EE-EEEETTEE
T ss_pred             CeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCc--cc-EE-EEEeCCEE
Confidence            34578899999999999988877653212 346665554433222 34566531  11 23 34478886

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=92.69  E-value=0.35  Score=35.58  Aligned_cols=37  Identities=22%  Similarity=0.351  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      ..-++.||..+|+.|..+...+.+.-. .+.+.++.+.
T Consensus        43 k~~ll~f~~~~C~~C~~~~~~l~~l~~-~~~v~~v~v~   79 (156)
T 1kng_A           43 KVSLVNVWASWCVPCHDEAPLLTELGK-DKRFQLVGIN   79 (156)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHTT-CTTSEEEEEE
T ss_pred             CEEEEEEEcccCHhHHHHHHHHHHHHh-cCCeEEEEEE
Confidence            345788999999999999999988754 3457666654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=92.58  E-value=0.46  Score=34.74  Aligned_cols=65  Identities=20%  Similarity=0.309  Sum_probs=40.0

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT  147 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~  147 (206)
                      ...-++.||..+|+.|......+.+.... .+.+.|+.+.-+.... ...+|+..  . =.+.+++.+|+
T Consensus        51 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~-Pt~~~~~~~g~  117 (141)
T 3hxs_A           51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQS--I-PTIWFVPMKGE  117 (141)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--S-SEEEEECSSSC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCC--c-CEEEEEeCCCC
Confidence            34567889999999999998888766321 2356665554433322 34566631  1 12446667777

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=92.58  E-value=0.12  Score=35.61  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=28.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      .+++||...+||.|.+...+|.++.   -.+.++++.
T Consensus        12 ~~v~ly~~~~Cp~C~~~~~~L~~~g---i~~~~~~v~   45 (92)
T 3ic4_A           12 AEVLMYGLSTCPHCKRTLEFLKREG---VDFEVIWID   45 (92)
T ss_dssp             SSSEEEECTTCHHHHHHHHHHHHHT---CCCEEEEGG
T ss_pred             ceEEEEECCCChHHHHHHHHHHHcC---CCcEEEEee
Confidence            4688898999999999999998875   357778876

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=92.57  E-value=0.39  Score=34.86  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=26.6

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccC---CCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQY---GTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~---~~I~fvdi~  118 (206)
                      .-++.||..+|+.|...+..+.+.-...   ..+.++.++
T Consensus        35 ~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~   74 (148)
T 3fkf_A           35 YLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGIS   74 (148)
T ss_dssp             EEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred             EEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEE
Confidence            4577889999999999998887663222   337776554

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=92.54  E-value=0.76  Score=32.83  Aligned_cols=63  Identities=14%  Similarity=0.133  Sum_probs=38.4

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.... .+.+.|+.+..+.... .+.+++..  .= .+.++ .+|++
T Consensus        33 ~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~--~P-t~~~~-~~G~~   97 (119)
T 1w4v_A           33 PVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSA--VP-TVLAM-KNGDV   97 (119)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCS--SS-EEEEE-ETTEE
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCc--cc-EEEEE-eCCcE
Confidence            457899999999999998888765321 2356666554433322 34566532  11 23344 78885

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.43  E-value=0.52  Score=34.40  Aligned_cols=76  Identities=14%  Similarity=0.075  Sum_probs=48.6

Q ss_pred             CceEEEEcCCChhhH------HHHHHHHhhcccCCCEEEEeCCChhhh-H-HHhC-CCCh--hcccceEEEEEeCCeEEe
Q 028608           82 WKIKMLYDGDCPLCM------REVNMLKERNKQYGTIKFVDISSDEYS-I-EENQ-GLDY--KTVMGSIHAIVSDGTVVT  150 (206)
Q Consensus        82 ~~l~VlYDG~CplC~------~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~~~-gld~--e~~~~~lhvv~~dG~v~~  150 (206)
                      .+++||.=..||+|.      +...+|.++.   -.+..+|+..+... . +... +-+.  ..-...+-++--+|+.+.
T Consensus         8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~g---i~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~iG   84 (111)
T 2ct6_A            8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANK---IEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCG   84 (111)
T ss_dssp             CCEEEEECSSCSCHHHHHHHHHHHHHHHHTT---CCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEEE
T ss_pred             cEEEEEEcCCCCCcccchhHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEEEe
Confidence            468899999999999      7888887764   36888999865332 1 2222 0000  000112334456899999


Q ss_pred             hHHHHHHHHH
Q 028608          151 DVEAFRRLYE  160 (206)
Q Consensus       151 G~dA~~~il~  160 (206)
                      |.+-+..+..
T Consensus        85 G~d~l~~l~~   94 (111)
T 2ct6_A           85 DYDSFFESKE   94 (111)
T ss_dssp             EHHHHHHHHT
T ss_pred             CHHHHHHHHH
Confidence            9998877654

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=92.43  E-value=0.49  Score=34.70  Aligned_cols=63  Identities=14%  Similarity=0.196  Sum_probs=39.0

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.......+.|+.+.-+.... .+.+++..  .=+ + ++..+|++
T Consensus        39 ~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~--~Pt-~-~i~~~G~~  102 (125)
T 1r26_A           39 LTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQ--LPT-F-IIARSGKM  102 (125)
T ss_dssp             CEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--SSE-E-EEEETTEE
T ss_pred             EEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCc--ccE-E-EEEeCCeE
Confidence            4578999999999999998887764323446666554433322 34566531  212 3 34478885

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=92.42  E-value=0.63  Score=32.04  Aligned_cols=64  Identities=16%  Similarity=0.221  Sum_probs=38.2

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ..-++.||..+|+.|......+.+.... .+.+.++.+..+.... .+.+|+..  .= .+ ++..+|+.
T Consensus        20 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~P-t~-~~~~~G~~   85 (107)
T 1dby_A           20 VPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRS--IP-TI-MVFKGGKK   85 (107)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCS--SC-EE-EEESSSSE
T ss_pred             CcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCc--CC-EE-EEEeCCEE
Confidence            3467889999999999998888765321 2346666555433222 33455531  11 23 33468875

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=92.35  E-value=0.45  Score=33.36  Aligned_cols=63  Identities=17%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.......+.|+.+..+.... .+.+|+..  .= .+ ++..+|+.
T Consensus        30 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~P-t~-~~~~~g~~   93 (118)
T 2vm1_A           30 LVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEA--MP-TF-LFIKDGEK   93 (118)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCS--BS-EE-EEEETTEE
T ss_pred             EEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCc--Cc-EE-EEEeCCeE
Confidence            4578899999999999998887764333456666554443322 34566531  21 23 33478875

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=92.28  E-value=0.71  Score=31.83  Aligned_cols=63  Identities=14%  Similarity=0.240  Sum_probs=38.5

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.... .+.+.|+.+..+.... .+.+|+..  .= .+.++ .+|++
T Consensus        22 ~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~P-t~~~~-~~G~~   86 (108)
T 2trx_A           22 AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG--IP-TLLLF-KNGEV   86 (108)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCS--SS-EEEEE-ETTEE
T ss_pred             eEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcc--cC-EEEEE-eCCEE
Confidence            457889999999999998888765321 2357776654433222 34556531  11 23344 78886

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=92.14  E-value=0.43  Score=33.64  Aligned_cols=62  Identities=21%  Similarity=0.394  Sum_probs=37.8

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      -++.||..+|+.|......+.+.......+.|+.+..+.... .+.+|+..  .= .+ ++..+|+.
T Consensus        29 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~--~P-t~-~~~~~G~~   91 (112)
T 1syr_A           29 VIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITS--MP-TF-KVYKNGSS   91 (112)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCS--SS-EE-EEEETTEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCc--cc-EE-EEEECCcE
Confidence            467899999999999998887764323446665554433222 34555531  11 23 34468875

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=92.11  E-value=0.53  Score=32.93  Aligned_cols=67  Identities=13%  Similarity=0.244  Sum_probs=40.4

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh--hhhHHHhCCCChhcccceEEEEEeCCeE---EehH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD--EYSIEENQGLDYKTVMGSIHAIVSDGTV---VTDV  152 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~--~~~~l~~~gld~e~~~~~lhvv~~dG~v---~~G~  152 (206)
                      .-++.||..+|+.|......+.+.......+.|+.+..+  .......+|+..  .=+ + +++.+|++   +.|.
T Consensus        26 ~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~--~Pt-~-~~~~~G~~~~~~~G~   97 (111)
T 2pu9_C           26 PVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRV--VPT-F-KILKENSVVGEVTGA   97 (111)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSB--SSE-E-EEESSSSEEEEEESS
T ss_pred             EEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCe--eeE-E-EEEeCCcEEEEEcCC
Confidence            457889999999999999888776432334666555433  222234455531  112 3 45678875   4554

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=92.10  E-value=0.74  Score=33.77  Aligned_cols=65  Identities=22%  Similarity=0.264  Sum_probs=40.0

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ..-++.||..+|+.|......+.+.... .+.+.|+.+.-+.... .+.+|+..  . =.+.+++.+|++
T Consensus        39 k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~~G~~  105 (136)
T 2l5l_A           39 KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRS--I-PSILFIPMEGKP  105 (136)
T ss_dssp             SCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--S-CEEEEECSSSCC
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCC--C-CEEEEECCCCcE
Confidence            4567899999999999998888765321 2346666554433222 34566532  2 124456678875

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=92.05  E-value=0.18  Score=38.30  Aligned_cols=76  Identities=11%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh----hhH-HH-hCCCChhcccceEEEEEeCCeEEehHH
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE----YSI-EE-NQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~----~~~-l~-~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      .+.+++||.=..||+|.+..++|.+...-...+..+++....    .+. +. ..|.      ..+-.+--+|+.+.|.|
T Consensus        12 ~~~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~------~tVP~IfI~G~~IGG~d   85 (127)
T 3l4n_A           12 DLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGR------GTVPNLLVNGVSRGGNE   85 (127)
T ss_dssp             TSCSEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSC------CSSCEEEETTEECCCHH
T ss_pred             ccCCEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCC------CCcceEEECCEEEcCHH
Confidence            455789999999999999999998852102357777776431    111 11 1121      12334445999999999


Q ss_pred             HHHHHHHH
Q 028608          154 AFRRLYEE  161 (206)
Q Consensus       154 A~~~il~~  161 (206)
                      -+.++-..
T Consensus        86 dl~~l~~~   93 (127)
T 3l4n_A           86 EIKKLHTQ   93 (127)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            88776543

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=92.04  E-value=0.68  Score=31.68  Aligned_cols=63  Identities=16%  Similarity=0.239  Sum_probs=38.3

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.... .+.+.|+.+..+.... .+.+|+..  .= .+.++ .+|+.
T Consensus        22 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~P-t~~~~-~~G~~   86 (107)
T 2i4a_A           22 LVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRS--IP-TLMLV-RDGKV   86 (107)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCS--SS-EEEEE-ETTEE
T ss_pred             EEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCc--cC-EEEEE-eCCEE
Confidence            456789999999999998888765321 2357776555433222 34566532  11 23344 78885

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=91.92  E-value=0.57  Score=32.03  Aligned_cols=63  Identities=13%  Similarity=0.217  Sum_probs=39.1

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+..... +.+.|+.+..+.... ...+|+..  .= .+ ++..+|+.
T Consensus        22 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~P-t~-~~~~~G~~   86 (106)
T 1xwb_A           22 LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISS--MP-TF-VFLKNGVK   86 (106)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCS--SS-EE-EEEETTEE
T ss_pred             EEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCc--cc-EE-EEEcCCcE
Confidence            3568899999999999988887653222 467777665443332 34556531  11 23 34468875

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=91.89  E-value=0.57  Score=34.44  Aligned_cols=39  Identities=21%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCCh
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSD  120 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~  120 (206)
                      .-++.||..+|+.|...+..+.+.-..  ...+.++.+..+
T Consensus        30 ~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d   70 (154)
T 3kcm_A           30 VVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSID   70 (154)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcC
Confidence            456789999999999998888765321  224666655443

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=91.88  E-value=0.4  Score=33.37  Aligned_cols=63  Identities=14%  Similarity=0.261  Sum_probs=38.5

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCC-CEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYG-TIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~-~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+...... .+.|+.+..+.... .+.+|+..  .=+ + ++..+|++
T Consensus        26 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt-~-~~~~~G~~   90 (112)
T 1ep7_A           26 PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITA--MPT-F-HVYKDGVK   90 (112)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCB--SSE-E-EEEETTEE
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCc--ccE-E-EEEECCeE
Confidence            45788999999999999988876632222 56666555443322 34455531  112 3 34478885

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=91.76  E-value=0.44  Score=35.01  Aligned_cols=37  Identities=11%  Similarity=0.335  Sum_probs=25.8

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~  118 (206)
                      .-++.||..+|+.|......+.+.-.  ....+.++.+.
T Consensus        30 ~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~   68 (153)
T 2l5o_A           30 VTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVA   68 (153)
T ss_dssp             EEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEE
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence            45788899999999998888766522  12347776554

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=91.75  E-value=0.36  Score=33.57  Aligned_cols=62  Identities=18%  Similarity=0.383  Sum_probs=37.3

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      -++.||..+|+.|......+.+.......+.|+.+..+.... .+.+|+..  .= .+ ++..+|++
T Consensus        29 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~--~P-t~-~~~~~G~~   91 (113)
T 1ti3_A           29 IVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEA--MP-TF-IFLKDGKL   91 (113)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSS--TT-EE-EEEETTEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCc--cc-EE-EEEeCCEE
Confidence            456789999999999998887764333467777665443222 23344421  11 23 33468875

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=91.74  E-value=0.6  Score=31.82  Aligned_cols=63  Identities=11%  Similarity=0.219  Sum_probs=38.0

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+||.|......+.+.......+.|+.+..+.... .+.+|+..  .=+ + ++..+|+.
T Consensus        21 ~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~Pt-~-~~~~~g~~   84 (104)
T 2vim_A           21 LIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTA--MPT-F-VFIKDGKE   84 (104)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--SSE-E-EEEETTEE
T ss_pred             eEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCcc--ccE-E-EEEeCCcE
Confidence            4567799999999999998887764323356666554433222 34556531  112 3 33458875

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=91.62  E-value=0.79  Score=31.79  Aligned_cols=66  Identities=12%  Similarity=0.234  Sum_probs=39.5

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      ...-++.||..+|+.|......+.+..... +.+.|+.+..+.... .+.+|+..  .= .+.++ .+|++.
T Consensus        25 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~--~P-t~~~~-~~G~~~   92 (115)
T 1thx_A           25 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEG--VP-ALRLV-KGEQIL   92 (115)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCS--SS-EEEEE-ETTEEE
T ss_pred             CceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCc--ee-EEEEE-cCCEEE
Confidence            345678999999999999998887653212 346665554333222 34566632  11 24344 788853

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=91.38  E-value=0.54  Score=32.14  Aligned_cols=64  Identities=16%  Similarity=0.297  Sum_probs=38.3

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ..-++.||..+|+.|......+.+..... +.+.|+.+..+.... .+.+++..  .= .+.++ .+|+.
T Consensus        20 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~P-t~~~~-~~G~~   85 (106)
T 3die_A           20 GVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMS--IP-TLIVF-KDGQP   85 (106)
T ss_dssp             SEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--BS-EEEEE-ETTEE
T ss_pred             CcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcc--cC-EEEEE-eCCeE
Confidence            34578899999999999998887663212 336665554433332 34566532  21 23344 58874

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=91.36  E-value=0.56  Score=35.33  Aligned_cols=64  Identities=13%  Similarity=0.214  Sum_probs=39.5

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ..-++.||..+|+.|......+.+.......+.|+.+.-+.... .+.+|+..  .= .+.+++ +|++
T Consensus        33 ~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~P-t~~~~~-~G~~   97 (153)
T 2wz9_A           33 SLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISS--VP-TFLFFK-NSQK   97 (153)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCS--SS-EEEEEE-TTEE
T ss_pred             CeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCC--CC-EEEEEE-CCEE
Confidence            34578899999999999998887764323456666554433222 34566531  21 243555 8875

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=91.32  E-value=0.61  Score=31.99  Aligned_cols=63  Identities=13%  Similarity=0.174  Sum_probs=37.6

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.... .+.+.++.+..+.... .+.+|+..  .= .+.++ .+|+.
T Consensus        19 ~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~--~P-t~~~~-~~G~~   83 (105)
T 1nsw_A           19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMS--IP-TLILF-KGGRP   83 (105)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCS--SS-EEEEE-ETTEE
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCcc--cc-EEEEE-eCCeE
Confidence            457889999999999998887765321 2346665554333222 34566632  11 23344 78885

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=91.30  E-value=0.27  Score=37.73  Aligned_cols=70  Identities=16%  Similarity=0.274  Sum_probs=45.7

Q ss_pred             ceEEEEc-----CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HH-hCCCChhcccceEEEEEeCCeEEehHHH
Q 028608           83 KIKMLYD-----GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EE-NQGLDYKTVMGSIHAIVSDGTVVTDVEA  154 (206)
Q Consensus        83 ~l~VlYD-----G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~-~~gld~e~~~~~lhvv~~dG~v~~G~dA  154 (206)
                      +++||.=     -.||+|.+..++|.++..   .+..+++..+... . +. ..|..      .+-++--||+.+.|.+-
T Consensus        36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv---~y~~vdI~~d~~~~~~L~~~~G~~------tvP~VfI~G~~iGG~d~  106 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGFSAQAVQALAACGE---RFAYVDILQNPDIRAELPKYANWP------TFPQLWVDGELVGGCDI  106 (135)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHTTCS---CCEEEEGGGCHHHHHHHHHHHTCC------SSCEEEETTEEEESHHH
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHcCC---ceEEEECCCCHHHHHHHHHHHCCC------CcCEEEECCEEEEChHH
Confidence            4566666     489999999999987743   5788888654322 1 21 12321      23234459999999998


Q ss_pred             HHHHHHH
Q 028608          155 FRRLYEE  161 (206)
Q Consensus       155 ~~~il~~  161 (206)
                      +..+...
T Consensus       107 l~~l~~~  113 (135)
T 2wci_A          107 VIEMYQR  113 (135)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
Confidence            8776554

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=91.28  E-value=0.36  Score=36.21  Aligned_cols=39  Identities=13%  Similarity=0.004  Sum_probs=26.4

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCCh
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSD  120 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~  120 (206)
                      .-++.||-.+|+.|..++..|.+.-..  ...+.++.++.+
T Consensus        37 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d   77 (152)
T 2lrt_A           37 VVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLD   77 (152)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECS
T ss_pred             EEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEcc
Confidence            357788999999999998877665221  123666666543

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=91.25  E-value=0.23  Score=36.60  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=25.6

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~  118 (206)
                      .-+++||..+|+.|......+.+.-..  ...+.++.+.
T Consensus        32 ~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~   70 (152)
T 2lja_A           32 YIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLS   70 (152)
T ss_dssp             EEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEE
T ss_pred             EEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEE
Confidence            457788999999999888877665221  2346666554

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=91.24  E-value=0.29  Score=36.43  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=26.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s  119 (206)
                      .-++.||..+||.|......+.+.-.  ....+.++.+..
T Consensus        36 ~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~   75 (165)
T 3or5_A           36 AYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAV   75 (165)
T ss_dssp             EEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEEC
T ss_pred             EEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEEC
Confidence            45788999999999999988876532  123377776553

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=91.11  E-value=0.45  Score=34.97  Aligned_cols=78  Identities=13%  Similarity=0.085  Sum_probs=43.2

Q ss_pred             CceEEEEcCCChhhHHHHHHH---HhhcccCCCEEEEeCCC----hhhhH-HHhCCCChhcccceEEEEEeCCeEE----
Q 028608           82 WKIKMLYDGDCPLCMREVNML---KERNKQYGTIKFVDISS----DEYSI-EENQGLDYKTVMGSIHAIVSDGTVV----  149 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L---~r~d~~~~~I~fvdi~s----~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~----  149 (206)
                      .-++.||-.+|+.|......+   .+.......+.++.+.-    +.... .+.+|+..  . =.+.+++.+|++.    
T Consensus        33 ~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~--~-Pt~~~~d~~G~~v~~~~  109 (134)
T 2fwh_A           33 PVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG--L-PTILFFDGQGQEHPQAR  109 (134)
T ss_dssp             CEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCS--S-SEEEEECTTSCBCGGGC
T ss_pred             cEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCC--C-CEEEEECCCCCEeeeee
Confidence            457889999999999876443   22211122365554443    22222 34566632  2 2354677899863    


Q ss_pred             -eh---HHHHHHHHHHc
Q 028608          150 -TD---VEAFRRLYEEV  162 (206)
Q Consensus       150 -~G---~dA~~~il~~l  162 (206)
                       .|   .+.+...+..+
T Consensus       110 ~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A          110 VTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             BCSCCCHHHHHHHHHHC
T ss_pred             eeeccCHHHHHHHHHhc
Confidence             44   35555555554

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=91.07  E-value=0.73  Score=31.55  Aligned_cols=62  Identities=15%  Similarity=0.234  Sum_probs=37.5

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      -++.||..+|+.|......+.+..... +.+.|+.+..+.... ...+++..  .= .+.++ .+|+.
T Consensus        24 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~--~P-t~~~~-~~g~~   87 (109)
T 3tco_A           24 VLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLN--IP-TTLIF-VNGQL   87 (109)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCS--SS-EEEEE-ETTEE
T ss_pred             EEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCccc--CC-EEEEE-cCCcE
Confidence            468899999999999998887664322 356665554433332 34566531  21 23344 78874

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=91.03  E-value=0.9  Score=30.93  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=39.0

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      +..-++.||..+|+.|......+.+.... .+.+.|..+..+.... .+.+|+..  .= .+ ++..+|+.
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~P-t~-~~~~~g~~   84 (105)
T 1fb6_A           18 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRS--IP-TV-LFFKNGER   84 (105)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--SS-EE-EEEETTEE
T ss_pred             CCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCc--cc-EE-EEEeCCeE
Confidence            34567889999999999998888665321 2346666554443322 34556531  11 23 33468875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=90.93  E-value=0.77  Score=31.33  Aligned_cols=63  Identities=17%  Similarity=0.274  Sum_probs=38.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+..... +.+.|+.+..+.... .+.+++..  .= .+.++ .+|++
T Consensus        20 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~--~P-t~~~~-~~g~~   84 (109)
T 2yzu_A           20 LVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMS--IP-TVILF-KDGQP   84 (109)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCS--SS-EEEEE-ETTEE
T ss_pred             eEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCc--CC-EEEEE-eCCcE
Confidence            4568899999999999988877653212 357776655433222 34566532  11 23344 78885

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=90.93  E-value=0.46  Score=35.89  Aligned_cols=38  Identities=21%  Similarity=0.359  Sum_probs=25.8

Q ss_pred             ceEEEE-cCCChhhHHHHHHHHhhcc--cCCCEEEEeCCCh
Q 028608           83 KIKMLY-DGDCPLCMREVNMLKERNK--QYGTIKFVDISSD  120 (206)
Q Consensus        83 ~l~VlY-DG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s~  120 (206)
                      -++.|| -.+||.|..++..|.+.-.  ....+.++.++.+
T Consensus        32 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d   72 (161)
T 3drn_A           32 IVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSD   72 (161)
T ss_dssp             EEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESC
T ss_pred             EEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            456677 9999999999988876532  1233666665543

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=90.92  E-value=0.59  Score=32.94  Aligned_cols=64  Identities=13%  Similarity=0.172  Sum_probs=38.5

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ..-++.||..+|+.|......+.+..... +.+.|+.+.-+.... .+.+|+..  .= .+ ++..+|+.
T Consensus        31 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~--~P-t~-~~~~~g~~   96 (121)
T 2i1u_A           31 KPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVS--IP-TL-ILFKDGQP   96 (121)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--SS-EE-EEEETTEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCc--CC-EE-EEEECCEE
Confidence            34679999999999999998887653212 346665554333222 34566531  11 23 33468876

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=90.80  E-value=0.52  Score=35.16  Aligned_cols=37  Identities=14%  Similarity=0.290  Sum_probs=26.0

Q ss_pred             ceEEEE-cCCChhhHHHHHHHHhhcccC--CCEEEEeCCC
Q 028608           83 KIKMLY-DGDCPLCMREVNMLKERNKQY--GTIKFVDISS  119 (206)
Q Consensus        83 ~l~VlY-DG~CplC~~~v~~L~r~d~~~--~~I~fvdi~s  119 (206)
                      -++.|| -.+|+.|..++..|.+.-...  ..+.++.++.
T Consensus        39 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~   78 (160)
T 1xvw_A           39 VLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISV   78 (160)
T ss_dssp             EEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEES
T ss_pred             EEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeC
Confidence            456666 889999999999888764322  3577766654

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=90.79  E-value=0.39  Score=37.01  Aligned_cols=38  Identities=18%  Similarity=0.376  Sum_probs=27.0

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCC-CEEEEeCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYG-TIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~-~I~fvdi~s  119 (206)
                      .-++.||..+|+.|..++..|.+.-.... .+.++.++.
T Consensus        35 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~   73 (188)
T 2cvb_A           35 LLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINA   73 (188)
T ss_dssp             EEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEEC
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEc
Confidence            45788899999999998877766532122 288777764

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=90.70  E-value=0.075  Score=35.37  Aligned_cols=36  Identities=19%  Similarity=0.418  Sum_probs=25.9

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCC
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDIS  118 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~  118 (206)
                      .+++||+.+||.|......+.+..... +.+.|+.+.
T Consensus         5 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd   41 (85)
T 1fo5_A            5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYIN   41 (85)
T ss_dssp             EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEE
T ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEE
Confidence            578999999999999998887753212 356655443

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=90.55  E-value=0.83  Score=33.74  Aligned_cols=39  Identities=26%  Similarity=0.445  Sum_probs=27.7

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCCh
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSD  120 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~  120 (206)
                      .-++.||-.+||.|..++..|.+....  ...+.++.++.+
T Consensus        26 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d   66 (151)
T 3raz_A           26 VRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALD   66 (151)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESS
T ss_pred             EEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            346778999999999999988775321  245777665543

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=90.50  E-value=0.24  Score=37.99  Aligned_cols=37  Identities=14%  Similarity=0.354  Sum_probs=27.0

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCC--CEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYG--TIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~--~I~fvdi~  118 (206)
                      ..+++|+|-+||.|..+...+.+.....+  ++.|.++.
T Consensus        24 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p   62 (175)
T 3gyk_A           24 VTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWP   62 (175)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            46788999999999999988877643223  45565543

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=90.46  E-value=0.91  Score=32.06  Aligned_cols=62  Identities=15%  Similarity=0.292  Sum_probs=39.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+..... .+.|+.+..+.... .+.+|+..  .=+ + ++..+|++
T Consensus        35 ~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~--~Pt-~-~~~~~G~~   97 (117)
T 2xc2_A           35 LVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISA--MPT-F-IAIKNGEK   97 (117)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTCCS--SSE-E-EEEETTEE
T ss_pred             EEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCCCc--cce-E-EEEeCCcE
Confidence            4568899999999999999998875423 56666554443332 34566531  112 3 34478875

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=90.44  E-value=0.66  Score=33.88  Aligned_cols=64  Identities=17%  Similarity=0.177  Sum_probs=39.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      .-++.||-.+|+.|......+.+.....+.+.|+.+..+.... .+.+|+..  .= .+ ++..+|++.
T Consensus        48 ~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~--~P-t~-~~~~~G~~~  112 (139)
T 3d22_A           48 IVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKA--TP-TF-FFLRDGQQV  112 (139)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCE--ES-EE-EEEETTEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCc--cc-EE-EEEcCCeEE
Confidence            4578899999999999998887764333456666554443332 34566632  11 23 334788753

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=90.42  E-value=0.072  Score=35.45  Aligned_cols=64  Identities=27%  Similarity=0.434  Sum_probs=37.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeE-EehH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTV-VTDV  152 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~---~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v-~~G~  152 (206)
                      -.+++||+.+||.|......+.+....   .-.+..+++..+... .+.+|+.  ..= .+ ++  ||++ +.|.
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~v~--~~P-t~-~~--~G~~~~~G~   70 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK-AIEYGLM--AVP-AI-AI--NGVVRFVGA   70 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGG-GGGTCSS--CSS-EE-EE--TTTEEEECS
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHH-HHhCCce--eeC-EE-EE--CCEEEEccC
Confidence            357899999999999999888764211   224445555443221 2345553  111 12 22  8885 6664

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=90.39  E-value=0.47  Score=34.81  Aligned_cols=37  Identities=8%  Similarity=0.172  Sum_probs=24.6

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~  118 (206)
                      .-++.||..+|+.|......|.+....  ...+.++.+.
T Consensus        30 ~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~   68 (152)
T 3gl3_A           30 VVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVN   68 (152)
T ss_dssp             EEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence            356779999999999988877665221  1225555444

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=90.25  E-value=0.36  Score=34.35  Aligned_cols=36  Identities=17%  Similarity=0.323  Sum_probs=29.7

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS  119 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s  119 (206)
                      ..+++||+-.+||.|.+...+|.++..   .+..+++..
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~i---~y~~vdI~~   56 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTKKLLTDLGV---DFDYVYVDR   56 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHHHTB---CEEEEEGGG
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCC---CcEEEEeec
Confidence            456889999999999999999988753   478888874

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=90.19  E-value=0.74  Score=30.81  Aligned_cols=37  Identities=16%  Similarity=0.473  Sum_probs=29.0

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCC
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISS  119 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s  119 (206)
                      ++++||-.+||.|......+.+..... ..+.++++..
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~   40 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGT   40 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTT
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecC
Confidence            578999999999999999887764322 3578888875

>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A*

Probab=90.18  E-value=1.7  Score=34.70  Aligned_cols=76  Identities=13%  Similarity=0.136  Sum_probs=48.2

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEe-CCeEEehHHHHHHH
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVS-DGTVVTDVEAFRRL  158 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~-dG~v~~G~dA~~~i  158 (206)
                      +..+++++|-..||.|.+..-.|...+.   .++.+.+.-....+ ....+.+   .+.+-++.. ||.++..+.|+++-
T Consensus        20 ~~~~~~Ly~~~~sp~~~~v~~~L~~~gi---~~e~~~v~~~~~~~-~~~~~nP---~g~vP~L~~~~g~~l~eS~aI~~y   92 (239)
T 3q18_A           20 PEGLIRIYSMRFCPYSHRTRLVLKAKDI---RHEVVNINLRNKPE-WYYTKHP---FGHIPVLETSQSQLIYESVIACEY   92 (239)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHHHHTTC---CEEEEEBCSSSCCG-GGGGTST---TCCSCEEECTTCCEECSHHHHHHH
T ss_pred             CCCeEEEEeCCCChHHHHHHHHHHHcCC---CcEEEecCcccCCH-HHHhcCC---CCCCCEEEeCCCceeecHHHHHHH
Confidence            4568899999999999988777776543   35555443221111 1112222   233445555 89999999999987


Q ss_pred             HHHc
Q 028608          159 YEEV  162 (206)
Q Consensus       159 l~~l  162 (206)
                      +...
T Consensus        93 L~~~   96 (239)
T 3q18_A           93 LDDA   96 (239)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7664

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=89.94  E-value=0.72  Score=32.87  Aligned_cols=65  Identities=14%  Similarity=0.300  Sum_probs=39.1

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh--hhhHHHhCCCChhcccceEEEEEeCCeEE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD--EYSIEENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~--~~~~l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      ..-++.||..+||-|......+.+.......+.|+.+..+  .....+.+|+..  .=+ + ++..+|++.
T Consensus        38 ~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~--~Pt-~-~~~~~G~~~  104 (124)
T 1faa_A           38 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRV--VPT-F-KILKENSVV  104 (124)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSS--SSE-E-EEEETTEEE
T ss_pred             CEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCe--eeE-E-EEEeCCcEE
Confidence            3457889999999999999888776432334666555433  222234455531  112 3 455788853

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=89.83  E-value=0.54  Score=33.62  Aligned_cols=63  Identities=8%  Similarity=0.141  Sum_probs=39.5

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||-.+|+-|......+.+.......+.|+.+.-+.... .+.+|+.-  .= .+.+ ..+|+.
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~--~P-t~~~-~~~G~~   96 (116)
T 3qfa_C           33 LVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKS--MP-TFQF-FKKGQK   96 (116)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCS--SS-EEEE-ESSSSE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCcc--cc-EEEE-EeCCeE
Confidence            3467799999999999999888875434447776555443333 34566632  21 2323 367865

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=89.82  E-value=0.38  Score=34.08  Aligned_cols=65  Identities=18%  Similarity=0.292  Sum_probs=39.7

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEe
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVT  150 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~  150 (206)
                      .-+++||..+|+.|......+.+.......+.|+.+..+.... .+.+|+..  .= .+.++ .+|+...
T Consensus        21 ~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~P-t~~~~-~~G~~v~   86 (110)
T 2l6c_A           21 DAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFER--VP-TLVFI-RDGKVAK   86 (110)
T ss_dssp             EEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCS--SC-EEEEE-ESSSEEE
T ss_pred             CEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcc--cC-EEEEE-ECCEEEE
Confidence            3578899999999999999888775433456565444333222 34566531  21 23344 7887654

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=89.74  E-value=1.2  Score=33.31  Aligned_cols=37  Identities=16%  Similarity=0.299  Sum_probs=27.3

Q ss_pred             CceEEEEcCCCh-hhHHHHHHHHhhcccCC-----CEEEEeCC
Q 028608           82 WKIKMLYDGDCP-LCMREVNMLKERNKQYG-----TIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~Cp-lC~~~v~~L~r~d~~~~-----~I~fvdi~  118 (206)
                      .-++.||-.+|+ .|..++..|.+......     .+.++.++
T Consensus        37 ~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is   79 (172)
T 2k6v_A           37 VVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVS   79 (172)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEE
Confidence            457778899999 59999998887643232     57777665

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=89.38  E-value=0.46  Score=33.53  Aligned_cols=64  Identities=17%  Similarity=0.297  Sum_probs=38.8

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      .-++.||..+|+-|......+.+.......+.|+.+..+.... .+.+++..  .= .+.++ .+|+..
T Consensus        26 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~P-t~~~~-~~G~~~   90 (109)
T 3f3q_A           26 LVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSA--MP-TLLLF-KNGKEV   90 (109)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS--SS-EEEEE-ETTEEE
T ss_pred             EEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCc--cC-EEEEE-ECCEEE
Confidence            3467799999999999998887764334446665554433322 34556531  21 24344 488754

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=89.35  E-value=0.71  Score=35.39  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=25.6

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~  118 (206)
                      .-++.||-.+|+.|..++..|.+.-..  ...+.++.++
T Consensus        62 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~  100 (186)
T 1jfu_A           62 TLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAIN  100 (186)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEE
T ss_pred             EEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEE
Confidence            457888999999999998887765321  1346555544

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=89.32  E-value=1.4  Score=33.19  Aligned_cols=74  Identities=12%  Similarity=0.196  Sum_probs=47.0

Q ss_pred             CCCceEEEEcCC-----ChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--H-HhCCCChhcccceEEEEEeCCeEEeh
Q 028608           80 ENWKIKMLYDGD-----CPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--E-ENQGLDYKTVMGSIHAIVSDGTVVTD  151 (206)
Q Consensus        80 ~~~~l~VlYDG~-----CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l-~~~gld~e~~~~~lhvv~~dG~v~~G  151 (206)
                      .+.+++||-=|.     ||+|.+..+.|.....  ..+..+++.++....  + +..|-  .++= ++   --+|+.+.|
T Consensus        18 ~~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv--~~~~~~~v~~~~~~r~~l~~~sg~--~TvP-qI---FI~g~~IGG   89 (118)
T 2wul_A           18 KKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGV--RDYAAYNVLDDPELRQGIKDYSNW--PTIP-QV---YLNGEFVGG   89 (118)
T ss_dssp             HHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTC--CSCEEEETTSCHHHHHHHHHHHTC--CSSC-EE---EETTEEEEC
T ss_pred             hcCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCC--cCeEeecccCCHHHHHHHHHhccC--CCCC-eE---eECCEEECC
Confidence            345666666664     9999999999987642  347777876654321  1 11221  1221 22   349999999


Q ss_pred             HHHHHHHHHH
Q 028608          152 VEAFRRLYEE  161 (206)
Q Consensus       152 ~dA~~~il~~  161 (206)
                      .|-+.++...
T Consensus        90 ~Ddl~~l~~~   99 (118)
T 2wul_A           90 CDILLQMHQN   99 (118)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHC
Confidence            9988887665

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=89.29  E-value=0.66  Score=35.78  Aligned_cols=36  Identities=17%  Similarity=0.226  Sum_probs=27.6

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      ..-++.||..+||.|..++..|.+.-. . .+.++.++
T Consensus        59 k~vll~F~a~~C~~C~~~~~~l~~l~~-~-~v~vv~vs   94 (176)
T 3kh7_A           59 KPALVNVWGTWCPSCRVEHPELTRLAE-Q-GVVIYGIN   94 (176)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHH-T-TCEEEEEE
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHH-C-CCEEEEEe
Confidence            345778999999999999999988754 2 46666555

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=89.28  E-value=1  Score=32.80  Aligned_cols=24  Identities=13%  Similarity=-0.032  Sum_probs=19.8

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhh
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKER  105 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~  105 (206)
                      .-++.||-.+|+.|..++..|.+.
T Consensus        30 ~vll~F~a~wC~~C~~~~~~l~~l   53 (144)
T 1i5g_A           30 TVFFYFSASWCPPSRAFTPQLIDF   53 (144)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHH
Confidence            356778999999999998887665

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=89.28  E-value=1.2  Score=31.88  Aligned_cols=63  Identities=13%  Similarity=0.211  Sum_probs=37.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCC--EEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGT--IKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~--I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.......  +.|+.+..+.... .+.+|+..  .= .+ ++..+|+.
T Consensus        35 ~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~--~P-t~-~~~~~G~~  100 (121)
T 2j23_A           35 VVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRA--MP-TF-VFFKNGQK  100 (121)
T ss_dssp             CEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCS--SS-EE-EEEETTEE
T ss_pred             EEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCc--cc-EE-EEEECCeE
Confidence            357899999999999999888776432222  6665554333222 33455531  11 23 33468875

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=89.27  E-value=0.56  Score=32.09  Aligned_cols=64  Identities=9%  Similarity=0.238  Sum_probs=40.0

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ..-++.||..+|+.|......+.+.......+.|+.+..+.... .+.+++.  ..= .+.++ .+|+.
T Consensus        21 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~P-t~~~~-~~g~~   85 (105)
T 3m9j_A           21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVK--SMP-TFQFF-KKGQK   85 (105)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCC--BSS-EEEEE-ETTEE
T ss_pred             CeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCC--cCc-EEEEE-ECCeE
Confidence            34578899999999999999887764333446666555443333 3456653  222 23344 67775

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=89.24  E-value=1.9  Score=31.69  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGL  130 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gl  130 (206)
                      .-++.||-.+|+-|......+.+... .-.+.|+.+..+.... .+.+|+
T Consensus        42 ~vvv~F~a~wC~~C~~~~p~l~~l~~-~~~v~~~~vd~~~~~~l~~~~~v   90 (133)
T 3cxg_A           42 SIVIKFGAVWCKPCNKIKEYFKNQLN-YYYVTLVDIDVDIHPKLNDQHNI   90 (133)
T ss_dssp             EEEEEEECTTCHHHHHTHHHHHGGGG-TEECEEEEEETTTCHHHHHHTTC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHH-hcCEEEEEEeccchHHHHHhcCC
Confidence            45688999999999999999887754 2246666554433332 345665

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=89.19  E-value=0.94  Score=33.20  Aligned_cols=62  Identities=19%  Similarity=0.292  Sum_probs=39.2

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      -++.||..+|+.|......+.+..... +.+.|+.+..+.... ...+++..  .= .+.++ .+|++
T Consensus        53 vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~P-t~~~~-~~G~~  116 (140)
T 1v98_A           53 TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRS--VP-TLVLF-RRGAP  116 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCS--SS-EEEEE-ETTEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCc--cC-EEEEE-eCCcE
Confidence            578899999999999998887663222 357777666544332 34556531  11 23233 68885

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=88.93  E-value=0.92  Score=33.18  Aligned_cols=63  Identities=13%  Similarity=0.197  Sum_probs=37.4

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.... .+.+.|+.+..+.... .+.+++.  ..= .+.++ .+|++
T Consensus        42 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~--~~P-t~~~~-~~G~~  106 (128)
T 2o8v_B           42 AILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR--GIP-TLLLF-KNGEV  106 (128)
T ss_dssp             EEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCC--SSS-EEEEE-ETTEE
T ss_pred             EEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCC--ccC-EEEEE-eCCEE
Confidence            456888999999999988877665321 2357776654433222 2344442  111 23344 78885

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=88.91  E-value=1.1  Score=34.10  Aligned_cols=64  Identities=8%  Similarity=0.137  Sum_probs=39.4

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ..-++.||..+|+.|......+.+.... .+.+.|+.+..+.... ...+|+..  .= .+.++ .+|+.
T Consensus        65 ~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~P-t~~~~-~~G~~  130 (155)
T 2ppt_A           65 LPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQG--IP-AFILF-HKGRE  130 (155)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCS--SS-EEEEE-ETTEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCc--CC-EEEEE-eCCeE
Confidence            3467899999999999998888765321 2357776655443332 34566632  11 23233 68885

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=88.84  E-value=0.29  Score=37.89  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=25.6

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEe
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVD  116 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvd  116 (206)
                      ...+++|+|-+||+|.+....+.+.+  .-++.|..
T Consensus        15 ~~~vv~f~D~~Cp~C~~~~~~l~~l~--~v~v~~~~   48 (147)
T 3gv1_A           15 KLKVAVFSDPDCPFCKRLEHEFEKMT--DVTVYSFM   48 (147)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHTTCC--SEEEEEEE
T ss_pred             CEEEEEEECCCChhHHHHHHHHhhcC--ceEEEEEE
Confidence            45689999999999999999887653  23455543

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=88.79  E-value=1.3  Score=31.05  Aligned_cols=59  Identities=24%  Similarity=0.344  Sum_probs=40.2

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEE-eCCeEEeh
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIV-SDGTVVTD  151 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~-~dG~v~~G  151 (206)
                      ++++|+=.+|+.|......|.+...  ..+.-+|+..+... .+.+|+.       +-++. .||+...|
T Consensus         2 ~vv~f~a~~C~~C~~~~~~L~~~~~--~~~~~vdid~~~~l-~~~~g~~-------vPtl~~~~G~~v~g   61 (87)
T 1ttz_A            2 ALTLYQRDDCHLCDQAVEALAQARA--GAFFSVFIDDDAAL-ESAYGLR-------VPVLRDPMGRELDW   61 (87)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHTTC--CCEEEEECTTCHHH-HHHHTTT-------CSEEECTTCCEEES
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHH--hheEEEECCCCHHH-HHHhCCC-------cCeEEEECCEEEeC
Confidence            5789999999999999999988743  33677888765432 2345652       22333 67886644

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=88.76  E-value=0.44  Score=36.81  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=25.6

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCC
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISS  119 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s  119 (206)
                      -++.||..+|+.|..++..|.+....  ...+.++.++.
T Consensus        49 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~   87 (196)
T 2ywi_A           49 TVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINS   87 (196)
T ss_dssp             EEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEEC
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence            57888999999999988877665321  12366665553

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=88.55  E-value=0.31  Score=39.44  Aligned_cols=37  Identities=16%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI  117 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi  117 (206)
                      ...+++|+|-+||.|.++...+.+.....-++.++.+
T Consensus        87 k~~vv~F~d~~Cp~C~~~~~~l~~l~~~~v~v~~~~~  123 (216)
T 1eej_A           87 KHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAF  123 (216)
T ss_dssp             CEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEEC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence            4468999999999999999988877532234555443

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=88.18  E-value=1  Score=30.98  Aligned_cols=63  Identities=11%  Similarity=0.140  Sum_probs=39.3

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccC----CCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQY----GTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~----~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.....    ..+.|+.+..+.... .+.+++..  .= .+ ++..+|+.
T Consensus        23 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~P-t~-~~~~~g~~   90 (111)
T 3uvt_A           23 ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRG--YP-TL-LLFRGGKK   90 (111)
T ss_dssp             EEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCS--SS-EE-EEEETTEE
T ss_pred             cEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCc--cc-EE-EEEeCCcE
Confidence            3578899999999999998887764321    367776555443332 34566632  21 23 33367764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=88.13  E-value=0.83  Score=31.66  Aligned_cols=64  Identities=8%  Similarity=0.197  Sum_probs=38.4

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ..-++.||..+|+.|......+.+.....+.+.|+.+.-+.... .+.+|+..  .= .+.+ ..+|+.
T Consensus        22 ~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~P-t~~~-~~~G~~   86 (107)
T 1gh2_A           22 RLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISA--TP-TFQF-FRNKVR   86 (107)
T ss_dssp             SCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCS--SS-EEEE-EETTEE
T ss_pred             CEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCc--cc-EEEE-EECCeE
Confidence            34578899999999999998887764323456665554333222 34566531  21 2323 368874

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=88.12  E-value=0.69  Score=33.80  Aligned_cols=39  Identities=21%  Similarity=0.405  Sum_probs=27.4

Q ss_pred             CceEEEEcCCChhhHHHHHHHHh---hcc--cCCCEEEEeCCCh
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKE---RNK--QYGTIKFVDISSD  120 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r---~d~--~~~~I~fvdi~s~  120 (206)
                      .-++.||-.+|+.|..++..+.+   .-.  ....+.++.++.+
T Consensus        33 ~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d   76 (142)
T 3eur_A           33 YTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPD   76 (142)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECS
T ss_pred             EEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcC
Confidence            45677899999999999888877   211  1245777766544

>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis}

Probab=88.09  E-value=1.3  Score=35.18  Aligned_cols=76  Identities=13%  Similarity=-0.004  Sum_probs=46.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      .++++|+...||+|.+..-.|...+. .-.+..+++...+....+...+++   .+.+-++..+|.++..+.|+++-+..
T Consensus         2 ~kpiLY~~~~Sp~~~~vr~~L~~~gi-~ye~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~d~~~~l~eS~aI~~YL~~   77 (228)
T 4hi7_A            2 VKPILYGIDASPPVRAVKLTLAALQL-PYDYKIVNLMNKEQHSEEYLKKNP---QHTVPLLEDGDANIADSHAIMAYLVS   77 (228)
T ss_dssp             -CCEEEECTTCHHHHHHHHHHHHHTC-CCEEEECCTTTTGGGSHHHHHHCT---TCCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             CceEEEECCCChHHHHHHHHHHHhCC-CCEEEEecCCCcccCCHHHHHhCC---CCceeeEEECCEEEechHHHHHHHHH
Confidence            35689999999999987777766653 123444555443211111111122   23455666789999999999987644

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=88.05  E-value=0.56  Score=38.69  Aligned_cols=35  Identities=14%  Similarity=0.258  Sum_probs=25.3

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCC--EEEEeC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGT--IKFVDI  117 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~--I~fvdi  117 (206)
                      ..+++|+|-+||.|.++..-+.+... .+.  |.++++
T Consensus        99 ~~v~~F~D~~Cp~C~~~~~~l~~~~~-~g~v~v~~~~~  135 (241)
T 1v58_A           99 VIVYVFADPFCPYCKQFWQQARPWVD-SGKVQLRTLLV  135 (241)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHH-TTSEEEEEEEC
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHHh-CCcEEEEEEEC
Confidence            35888999999999999888776533 234  455554

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=88.01  E-value=2.1  Score=32.59  Aligned_cols=36  Identities=17%  Similarity=0.148  Sum_probs=24.4

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCC
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDIS  118 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~---~~~I~fvdi~  118 (206)
                      -++.||-.+|+.|..++..|.+.-..   ...+.++.++
T Consensus        51 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~   89 (165)
T 3s9f_A           51 VFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILAS   89 (165)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred             EEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            46778999999999999888665211   1345555444

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=87.93  E-value=0.51  Score=33.31  Aligned_cols=63  Identities=19%  Similarity=0.247  Sum_probs=36.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.... .+.+.|+.+..+.... .+.+|+..  .= .+.++ .+|++
T Consensus        19 ~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~P-t~~~~-~~G~~   83 (112)
T 2voc_A           19 VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMS--IP-TLLVL-KDGEV   83 (112)
T ss_dssp             EEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCS--BS-EEEEE-ETTEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCc--cc-EEEEE-eCCEE
Confidence            346788999999999988877665321 1346665554332222 34566531  21 24344 78885

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=87.88  E-value=0.86  Score=35.57  Aligned_cols=36  Identities=14%  Similarity=0.322  Sum_probs=25.5

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEe
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVD  116 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvd  116 (206)
                      ...+++|||-+||.|......+.+..... +++.|..
T Consensus        26 ~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~   62 (195)
T 3hd5_A           26 KIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQ   62 (195)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEE
T ss_pred             CeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEE
Confidence            34689999999999999988887663322 2454443

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=87.83  E-value=1.2  Score=33.27  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=25.1

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEe
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVD  116 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvd  116 (206)
                      .-++.||..+||.|..+...+.+.....-.+-.++
T Consensus        53 ~vll~F~a~~C~~C~~~~~~l~~l~~~~v~vv~v~   87 (168)
T 2b1k_A           53 PVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMN   87 (168)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEE
Confidence            45788899999999999998887753222344444

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=87.66  E-value=1.1  Score=34.76  Aligned_cols=38  Identities=3%  Similarity=-0.052  Sum_probs=25.9

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDIS  118 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~  118 (206)
                      ..-++.||..+||.|..++..|.+.-..  ...+.++.++
T Consensus        49 k~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs   88 (190)
T 2vup_A           49 SPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFP   88 (190)
T ss_dssp             SCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            3457888999999999998887665211  1236666553

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=87.49  E-value=0.72  Score=33.46  Aligned_cols=37  Identities=24%  Similarity=0.553  Sum_probs=24.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHh---h---cccCCCEEEEeCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKE---R---NKQYGTIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r---~---d~~~~~I~fvdi~s  119 (206)
                      .-++.||..+||.|..++..+.+   .   .. ...+.++.++.
T Consensus        29 ~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~-~~~~~~v~v~~   71 (142)
T 3ewl_A           29 YTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVE-NGTLRVLAIYP   71 (142)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHHTCHHHHHHHH-HTSEEEEEEEC
T ss_pred             EEEEEEECCCCccHHHHHHHHHHhHHHHHHhc-cCCeEEEEEEe
Confidence            45677899999999998655544   1   11 13466666543

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*

Probab=87.35  E-value=3.7  Score=32.65  Aligned_cols=75  Identities=12%  Similarity=0.138  Sum_probs=48.0

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEe-CCeEEehHHHHHH
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVS-DGTVVTDVEAFRR  157 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~-dG~v~~G~dA~~~  157 (206)
                      +..+++++|...||.|.+..-.|.....   .++.+.+.-....+ ...  +.+   ...+-++.. ||.++.++.|+++
T Consensus        20 ~~~~~~Ly~~~~sp~~~~v~~~L~~~gi---~ye~~~v~~~~~~~~~~~--~~P---~g~vP~L~~~~g~~l~eS~aI~~   91 (241)
T 3vln_A           20 PEGSIRIYSMRFSPFAERTRLVLKAKGI---RHEVININLKNKPEWFFK--KNP---FGLVPVLENSQGQLIYESAITCE   91 (241)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHHHHHTC---CEEEEEBCTTSCCTTHHH--HCT---TCCSCEEECTTCCEEESHHHHHH
T ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHcCC---CCeEEecCcccCCHHHHH--hCC---CCCCCEEEECCCcEEEcHHHHHH
Confidence            4668999999999999988877877643   45555543221111 100  111   133445555 8999999999998


Q ss_pred             HHHHc
Q 028608          158 LYEEV  162 (206)
Q Consensus       158 il~~l  162 (206)
                      -+...
T Consensus        92 yL~~~   96 (241)
T 3vln_A           92 YLDEA   96 (241)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77664

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=87.31  E-value=0.42  Score=38.59  Aligned_cols=37  Identities=22%  Similarity=0.339  Sum_probs=26.8

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI  117 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi  117 (206)
                      ...+++|+|-+||.|.+....+.+.....-++.|..+
T Consensus        87 k~~vv~F~d~~Cp~C~~~~~~l~~~~~~~v~v~~~~~  123 (211)
T 1t3b_A           87 KHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAF  123 (211)
T ss_dssp             SEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEEC
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHHHHhCCcEEEEEEC
Confidence            3468899999999999999988876432234555443

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=87.29  E-value=1.6  Score=31.88  Aligned_cols=24  Identities=17%  Similarity=0.019  Sum_probs=19.7

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhh
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKER  105 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~  105 (206)
                      .-++.||-.+|+.|..++..|.+.
T Consensus        30 ~vll~F~a~wC~~C~~~~p~l~~l   53 (146)
T 1o8x_A           30 LVFFYFSASWCPPARGFTPQLIEF   53 (146)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEEEccCCHHHHHHHHHHHHH
Confidence            356778999999999998877665

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=87.15  E-value=0.72  Score=32.17  Aligned_cols=65  Identities=17%  Similarity=0.228  Sum_probs=37.0

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      ..-++.||..+|+.|......+.+....  ...+.|+.+..+.... ...+|+..  .=+ + ++..+|+..
T Consensus        22 ~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt-~-~~~~~G~~~   89 (112)
T 3d6i_A           22 KLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISA--VPY-F-IIIHKGTIL   89 (112)
T ss_dssp             CCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCS--SSE-E-EEEETTEEE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCc--ccE-E-EEEECCEEE
Confidence            3456889999999999999888766432  2346666555433222 34566531  112 3 233688853

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=87.11  E-value=1.8  Score=30.62  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=28.6

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      ....+++|+-.+||.|.....+|.+... .-.+..+|+.
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~-~i~~~~vdi~   52 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD-RFILQEVDIT   52 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSS-SSEEEEEETT
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhhh-CCeEEEEECC
Confidence            3456888888899999999999976543 3456667876

>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A*

Probab=86.91  E-value=1.5  Score=35.35  Aligned_cols=76  Identities=22%  Similarity=0.287  Sum_probs=46.3

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV  162 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l  162 (206)
                      ++++||...||+|.+..-.|...+.. -.+..+++............+.+   ...+-++..+|.++..+.|+++-+...
T Consensus        26 ~~~Ly~~~~sp~~~rv~~~L~~~gi~-ye~~~v~~~~~~~~~~~~~~~nP---~g~vPvL~~~g~~l~eS~aI~~YL~~~  101 (243)
T 3qav_A           26 KPFVYWGSGSPPCWKVLLVLQEKKID-YDEKIISFSKKEHKSEEILELNP---RGQVPTFTDGDVVVNESTAICMYLEEK  101 (243)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHTTCC-CEEEECCTTTTGGGSHHHHHHCT---TCCSCEEEETTEEECSHHHHHHHHHHH
T ss_pred             ccEEEeCCCCcchHHHHHHHHHcCCC-ceEEEecCcccccCCHHHHhhCC---CCCCCEEEECCEEEecHHHHHHHHHHH
Confidence            47999999999999877777766431 22333343322111111111111   234556667899999999999877664

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=86.78  E-value=1.2  Score=35.30  Aligned_cols=35  Identities=14%  Similarity=0.279  Sum_probs=25.7

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFV  115 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fv  115 (206)
                      ...++.|||-+||.|...-..+.++... .+++.|.
T Consensus        25 ~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~   60 (193)
T 3hz8_A           25 KVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLR   60 (193)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEE
T ss_pred             CcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEE
Confidence            3468899999999999998888776321 2356554

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=86.77  E-value=1.6  Score=31.66  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=20.1

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhh
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKER  105 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~  105 (206)
                      .-++.||-.+|+.|..++..|.+.
T Consensus        30 ~vll~F~a~wC~~C~~~~~~l~~l   53 (144)
T 1o73_A           30 TVFLYFSASWCPPCRGFTPVLAEF   53 (144)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEEECcCCHHHHHHHHHHHHH
Confidence            356788999999999998888765

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=86.75  E-value=1.3  Score=34.82  Aligned_cols=82  Identities=11%  Similarity=0.129  Sum_probs=44.1

Q ss_pred             CCCceEEEEcCCChhhHHHHHHH------HhhcccCCCEEEEeCCC--hhhh-------HHHhCCCCh---hcccceEEE
Q 028608           80 ENWKIKMLYDGDCPLCMREVNML------KERNKQYGTIKFVDISS--DEYS-------IEENQGLDY---KTVMGSIHA  141 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L------~r~d~~~~~I~fvdi~s--~~~~-------~l~~~gld~---e~~~~~lhv  141 (206)
                      ....++.|||-+||.|......+      .+.....-++.++++.-  +...       .....|...   +.+.+.+  
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~aa~a~~aA~~~g~~~~~~~~lf~a~--   91 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPLGHELTRAWALAMVMKETDVIEKAFFTAG--   91 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSSSSTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH--
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechhcccccHHHHHHHHHHHHcCcHHHHHHHHHHHH--
Confidence            34578999999999999887653      22222134566666653  2111       011233211   1111111  


Q ss_pred             EEeCCeEEehHHHHHHHHHHc-Cch
Q 028608          142 IVSDGTVVTDVEAFRRLYEEV-GLG  165 (206)
Q Consensus       142 v~~dG~v~~G~dA~~~il~~l-p~~  165 (206)
                       -.+|+ ....+.+..+...+ |+.
T Consensus        92 -~~~~~-~~~~~~l~~~a~~~~Gld  114 (189)
T 3l9v_A           92 -MVEKR-LHSPDDVRRVFMSATGIS  114 (189)
T ss_dssp             -TTTCC-CCSHHHHHHHHHHHHCCC
T ss_pred             -hhhcc-CCCHHHHHHHHHHccCCC
Confidence             13455 56667778888887 753

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=86.73  E-value=1.6  Score=32.12  Aligned_cols=37  Identities=8%  Similarity=0.246  Sum_probs=26.2

Q ss_pred             CceEEEEcCCChhhHHH-HHHHHhhccc--CCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMRE-VNMLKERNKQ--YGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~-v~~L~r~d~~--~~~I~fvdi~  118 (206)
                      .-++.||-.+|+.|..+ +..|.+.-..  ...+.++.++
T Consensus        30 ~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~   69 (158)
T 3eyt_A           30 VIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLH   69 (158)
T ss_dssp             EEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEE
T ss_pred             EEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEE
Confidence            34677899999999995 7777665321  2358887765

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=86.71  E-value=0.85  Score=31.48  Aligned_cols=64  Identities=20%  Similarity=0.295  Sum_probs=38.5

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ..-++.||..+|+.|......+.+..... +.+.|+.+.-+.... ...+++..  .= .+.++ .+|+.
T Consensus        23 ~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~P-t~~~~-~~g~~   88 (111)
T 3gnj_A           23 KACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKG--VP-QILYF-KDGEY   88 (111)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCS--SC-EEEEE-ETTEE
T ss_pred             CEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCc--CC-EEEEE-ECCEE
Confidence            44578899999999999988887664322 246665554433332 34566532  11 23233 68874

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=86.59  E-value=1  Score=34.85  Aligned_cols=36  Identities=17%  Similarity=0.380  Sum_probs=26.0

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEE--EeC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKF--VDI  117 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~f--vdi  117 (206)
                      -.+++|+|=.||.|......+.+.... .+.|.|  +++
T Consensus        27 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           27 IEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             eEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            368999999999999998888765321 235555  454

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=86.59  E-value=0.69  Score=34.19  Aligned_cols=49  Identities=16%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhHHHhCCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSIEENQGL  130 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~l~~~gl  130 (206)
                      ...+++|+=.+||+|.....+|.+.... .-.+..+|+..+... .+.+|+
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l-~~~ygv   78 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDGNEHL-TRLYND   78 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHH-HHHSTT
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHH-HHHhCC
Confidence            4568999999999999999999875221 235677888765432 345665

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=86.44  E-value=2.5  Score=31.79  Aligned_cols=37  Identities=14%  Similarity=0.210  Sum_probs=25.5

Q ss_pred             eEEEE-cCCChhhHHHHHHHHhhcccCCCEEEEeCCCh
Q 028608           84 IKMLY-DGDCPLCMREVNMLKERNKQYGTIKFVDISSD  120 (206)
Q Consensus        84 l~VlY-DG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~  120 (206)
                      ++.|| -.+|+.|..++..|.+.-.....+.++.++.+
T Consensus        46 vl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d   83 (163)
T 1psq_A           46 VLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMD   83 (163)
T ss_dssp             EEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESS
T ss_pred             EEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECC
Confidence            34444 47999999999998876432356777766654

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=86.44  E-value=1.1  Score=34.53  Aligned_cols=37  Identities=8%  Similarity=0.028  Sum_probs=26.0

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~  118 (206)
                      .-++.||-.+||.|..++..|.+.-.  ....+.++.++
T Consensus        49 ~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs   87 (183)
T 2obi_A           49 VCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFP   87 (183)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            45777899999999999888766532  11247777664

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=86.37  E-value=0.31  Score=35.35  Aligned_cols=38  Identities=18%  Similarity=0.335  Sum_probs=25.5

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s  119 (206)
                      .-++.||..+|+.|......+.+.-..  ...+.++.+..
T Consensus        33 ~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~   72 (148)
T 3hcz_A           33 YTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANI   72 (148)
T ss_dssp             EEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEEC
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEe
Confidence            346778999999999998877665211  12366665543

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=86.15  E-value=0.51  Score=40.77  Aligned_cols=37  Identities=24%  Similarity=0.517  Sum_probs=27.8

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI  117 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi  117 (206)
                      ....++||.|-+||+|++.-..+.+... ...++++.+
T Consensus       147 gk~~I~vFtDp~CPYCkkl~~~l~~~l~-~~~Vr~i~~  183 (273)
T 3tdg_A          147 KDKILYIVSDPMCPHCQKELTKLRDHLK-ENTVRMVVV  183 (273)
T ss_dssp             TTCEEEEEECTTCHHHHHHHHTHHHHHH-HCEEEEEEC
T ss_pred             CCeEEEEEECcCChhHHHHHHHHHHHhh-CCcEEEEEe
Confidence            4567899999999999999988874433 256666643

>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A*

Probab=86.10  E-value=2.3  Score=33.37  Aligned_cols=74  Identities=15%  Similarity=0.057  Sum_probs=46.6

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh--HHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS--IEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~--~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      +++++|...||.|.+..-.|...+.   .++.+.+.-....  ......+++   ...+-++..||.++.++.|+++-+.
T Consensus         3 ~~~Ly~~~~s~~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~~~g~~l~eS~aI~~yL~   76 (221)
T 2imi_A            3 NLVLYTLHLSPPCRAVELTAKALGL---ELEQKTINLLTGDHLKPEFVKLNP---QHTIPVLDDNGTIITESHAIMIYLV   76 (221)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHHTC---CEEEEECCGGGTGGGSHHHHTTCT---TCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             ceEEeeCCCCccHHHHHHHHHHcCC---CceEEEccccccccCCHHHHhhCc---CCCCCEEEECCEEEeeHHHHHHHHH
Confidence            5789999999999987667766543   3555555422111  111112332   2345566678999999999998766


Q ss_pred             Hc
Q 028608          161 EV  162 (206)
Q Consensus       161 ~l  162 (206)
                      ..
T Consensus        77 ~~   78 (221)
T 2imi_A           77 TK   78 (221)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=86.02  E-value=3.5  Score=32.26  Aligned_cols=72  Identities=10%  Similarity=0.244  Sum_probs=47.8

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEE-eCCeEEehHHHHHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRRLY  159 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~il  159 (206)
                      .++++|+...||.|.+..-.|...+.   .++.+.+.-..... .+.      .-...+-++. .+|.++.++.|+++-+
T Consensus         2 ~~~~Ly~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~------~p~~~vP~l~~~~g~~l~eS~aI~~yL   72 (218)
T 3ir4_A            2 NAMKLYIYDHCPFCVKARMIFGLKNI---PVELNVLQNDDEATPTRM------IGQKMVPILQKDDSRYLPESMDIVHYV   72 (218)
T ss_dssp             CCCEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTCCHHHHHH------HSSSCSCEEECTTSCEEECHHHHHHHH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCC---ceEEEECCCcchhhhhhc------CCCceeeeEEEeCCeEeeCHHHHHHHH
Confidence            46799999999999998888877653   35555444322211 111      1123444555 7899999999999977


Q ss_pred             HHc
Q 028608          160 EEV  162 (206)
Q Consensus       160 ~~l  162 (206)
                      ...
T Consensus        73 ~~~   75 (218)
T 3ir4_A           73 DNL   75 (218)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            774

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=85.99  E-value=2  Score=31.69  Aligned_cols=63  Identities=13%  Similarity=0.259  Sum_probs=38.8

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      .-++.||..+|+.|......+.+.... .+.+.|+.+..+.... .+.+++..  .= .+.++ .+|+.
T Consensus        57 ~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~P-t~~~~-~~G~~  121 (148)
T 3p2a_A           57 PMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRS--IP-TIMLY-RNGKM  121 (148)
T ss_dssp             CEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS--SS-EEEEE-ETTEE
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCc--cC-EEEEE-ECCeE
Confidence            456779999999999998888766321 2457776555443333 34566632  21 23233 68875

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=85.83  E-value=1.5  Score=32.15  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=26.4

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~  118 (206)
                      .-++.||-.+|+-|......+.+.....+ +.|+.+.
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd   68 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFI   68 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEE
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEE
Confidence            56788999999999999998887754223 4444443

>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori}

Probab=85.79  E-value=4.1  Score=32.80  Aligned_cols=79  Identities=9%  Similarity=0.018  Sum_probs=48.3

Q ss_pred             CCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEe-CCe---EEehH
Q 028608           77 PSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVS-DGT---VVTDV  152 (206)
Q Consensus        77 ~~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~-dG~---v~~G~  152 (206)
                      |...+.+++++|...||.|.+..-.|.....   .++.+.+.-....+ ....+.+   ...+-++.. ||.   ++..+
T Consensus        20 P~~~~~~~~Ly~~~~sp~~~~v~~~L~~~gi---~ye~~~v~~~~~~~-~~~~~nP---~g~vP~L~~~~g~~~~~l~eS   92 (246)
T 3rbt_A           20 PPALTDKLRLYHVDMNPYGHRVLLVLEAKRI---KYEVYRLDPLRLPE-WFRAKNP---RLKIPVLEIPTDQGDRFLFES   92 (246)
T ss_dssp             CCCCCSSEEEEECTTCHHHHHHHHHHHHTTB---CEEEEECCSSSCCH-HHHHHCT---TCBSCEEEECCTTSCEEECCH
T ss_pred             CCCCCCceEEEecCCCccHHHHHHHHHHcCC---CceEEEeCcccCCH-HHHHhCC---CCCCCEEEecCCCCceeeeCH
Confidence            3333567899999999999988777776543   35555443221111 0111111   133445544 888   99999


Q ss_pred             HHHHHHHHHc
Q 028608          153 EAFRRLYEEV  162 (206)
Q Consensus       153 dA~~~il~~l  162 (206)
                      .|+++-+...
T Consensus        93 ~aI~~yL~~~  102 (246)
T 3rbt_A           93 VVICDYLDEK  102 (246)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999877664

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=85.76  E-value=3.3  Score=30.78  Aligned_cols=51  Identities=22%  Similarity=0.316  Sum_probs=37.7

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh--H----HHhCCCChhcc
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS--I----EENQGLDYKTV  135 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~--~----l~~~gld~e~~  135 (206)
                      ..++||+-..|+.|++..+||.+.+   -.+.++++..+...  +    +...|++.+++
T Consensus         3 ~Mi~iY~~~~C~~c~ka~~~L~~~g---i~~~~~di~~~~~~~~eL~~~l~~~g~~~~~l   59 (120)
T 3fz4_A            3 AMLTFYEYPKCSTCRRAKAELDDLA---WDYDAIDIKKNPPAASLIRNWLENSGLELKKF   59 (120)
T ss_dssp             CSEEEEECSSCHHHHHHHHHHHHHT---CCEEEEETTTSCCCHHHHHHHHHHSCCCGGGG
T ss_pred             ceEEEEeCCCChHHHHHHHHHHHcC---CceEEEEeccCchhHHHHHHHHHHcCCCHHHH
Confidence            4688999999999999999998874   46899998765322  1    24456666555

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=85.68  E-value=0.8  Score=36.76  Aligned_cols=37  Identities=16%  Similarity=0.207  Sum_probs=26.6

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCC
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISS  119 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s  119 (206)
                      -++.||-.+||.|..++..|.+.-.  ....+.++.++.
T Consensus        62 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~  100 (218)
T 3u5r_E           62 LLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINS  100 (218)
T ss_dssp             EEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEEC
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence            4677889999999999888876532  123377776665

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=85.66  E-value=1.1  Score=34.73  Aligned_cols=34  Identities=18%  Similarity=0.330  Sum_probs=25.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEE
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFV  115 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fv  115 (206)
                      ..+++|+|-+||.|......+.++... .+++.|.
T Consensus        27 ~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~   61 (192)
T 3h93_A           27 IEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFV   61 (192)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEE
T ss_pred             CEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEE
Confidence            468999999999999999988776321 2356665

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=85.49  E-value=1  Score=32.24  Aligned_cols=51  Identities=14%  Similarity=0.289  Sum_probs=32.4

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLD  131 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld  131 (206)
                      ..-++.||-.+|+.|......+.+.....+.+.|+.+.-+.... .+.+++.
T Consensus        24 ~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~   75 (118)
T 2f51_A           24 GLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVS   75 (118)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCC
Confidence            34578899999999999988887654323456665554333222 3456653

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.46  E-value=0.3  Score=35.19  Aligned_cols=62  Identities=13%  Similarity=0.130  Sum_probs=36.3

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      -++.||..+|+.|......+.+....  ...+.|+.+.-+.... .+.+++.  ..= .+.++ .+|++
T Consensus        25 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~--~~P-t~~~~-~~G~~   89 (126)
T 1x5e_A           25 WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIIN--ALP-TIYHC-KDGEF   89 (126)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCC--SSS-EEEEE-ETTEE
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCc--ccC-EEEEE-eCCeE
Confidence            67889999999999998887665321  1245555443332222 3456653  121 23344 78875

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=85.40  E-value=1.4  Score=32.48  Aligned_cols=37  Identities=11%  Similarity=0.339  Sum_probs=25.5

Q ss_pred             CceEEEEcCCChhhHHH-HHHHHhhcc--cCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMRE-VNMLKERNK--QYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~-v~~L~r~d~--~~~~I~fvdi~  118 (206)
                      .-++.||..+|+.|..+ +..|.+.-.  ....+.++.++
T Consensus        32 ~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~   71 (160)
T 3lor_A           32 VVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLH   71 (160)
T ss_dssp             EEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEE
T ss_pred             EEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEe
Confidence            34677899999999995 777765532  12348887765

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=85.14  E-value=1.3  Score=34.11  Aligned_cols=37  Identities=5%  Similarity=0.138  Sum_probs=26.0

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~  118 (206)
                      .-++.||-.+||.|..++..|.+.-.  ....+.++.++
T Consensus        51 ~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs   89 (181)
T 2p31_A           51 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFP   89 (181)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEE
Confidence            45777899999999999888766521  11237777664

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=85.06  E-value=1.5  Score=33.13  Aligned_cols=65  Identities=9%  Similarity=0.108  Sum_probs=35.7

Q ss_pred             ceEEEE-cCCChhhHHHHHHH---Hhhccc-CCCEEEEeCCChhh-----------hH-HHhCCCChhcccceEEEEEeC
Q 028608           83 KIKMLY-DGDCPLCMREVNML---KERNKQ-YGTIKFVDISSDEY-----------SI-EENQGLDYKTVMGSIHAIVSD  145 (206)
Q Consensus        83 ~l~VlY-DG~CplC~~~v~~L---~r~d~~-~~~I~fvdi~s~~~-----------~~-l~~~gld~e~~~~~lhvv~~d  145 (206)
                      -++.|| -.+|+.|..+...+   .+.... ...+.++.+..+..           .. .+.+++.-  . =.+.+++.+
T Consensus        50 vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~--~-Pt~~~~d~~  126 (154)
T 2ju5_A           50 IGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTG--F-PELVFIDAE  126 (154)
T ss_dssp             EEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCS--S-SEEEEECTT
T ss_pred             EEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCC--C-CEEEEEcCC
Confidence            355667 89999999998766   222110 13455554443211           11 34455532  2 235577789


Q ss_pred             CeEEe
Q 028608          146 GTVVT  150 (206)
Q Consensus       146 G~v~~  150 (206)
                      |++..
T Consensus       127 G~~~~  131 (154)
T 2ju5_A          127 GKQLA  131 (154)
T ss_dssp             CCEEE
T ss_pred             CCEEE
Confidence            98654

>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli}

Probab=85.04  E-value=3.8  Score=31.87  Aligned_cols=77  Identities=19%  Similarity=0.177  Sum_probs=40.9

Q ss_pred             CceEEEEcC--CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608           82 WKIKMLYDG--DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        82 ~~l~VlYDG--~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il  159 (206)
                      .+++++|..  .||.|.+..-.|...+.. =.+..+++...+........+++   ...+-++..+|.++.++.|+++-+
T Consensus         5 ~~~~Ly~~~~~~s~~~~~v~~~l~~~gi~-~e~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~~~g~~l~eS~aI~~yL   80 (215)
T 3bby_A            5 PAITLWSDAHFFSPYVLSAWVALQEKGLS-FHIKTIDLDSGEHLQPTWQGYGQ---TRRVPLLQIDDFELSESSAIAEYL   80 (215)
T ss_dssp             CCEEEEEETTSCCHHHHHHHHHHHHHTCC-CEEEEEC---------------------CCCEEEETTEEEESHHHHHHHH
T ss_pred             CCEEEEecCCCCCcHHHHHHHHHHHcCCC-CEEEEecCccccccCHHHHhhCC---CCCCCEEEeCCeEeecHHHHHHHH
Confidence            356788776  899999877777666431 12333443221111011112222   234556556899999999999877


Q ss_pred             HHc
Q 028608          160 EEV  162 (206)
Q Consensus       160 ~~l  162 (206)
                      ...
T Consensus        81 ~~~   83 (215)
T 3bby_A           81 EDR   83 (215)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=84.94  E-value=1.9  Score=31.71  Aligned_cols=39  Identities=18%  Similarity=0.055  Sum_probs=27.3

Q ss_pred             CceEEEEcCCChh--hHHHHHHHHhhccc---CCCEEEEeCCCh
Q 028608           82 WKIKMLYDGDCPL--CMREVNMLKERNKQ---YGTIKFVDISSD  120 (206)
Q Consensus        82 ~~l~VlYDG~Cpl--C~~~v~~L~r~d~~---~~~I~fvdi~s~  120 (206)
                      .-++.||-.+|+.  |..++..|.+....   ...+.++.++.+
T Consensus        35 ~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d   78 (150)
T 3fw2_A           35 SLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLD   78 (150)
T ss_dssp             EEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECC
T ss_pred             EEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcC
Confidence            4567789999999  99999888765321   234777665443

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=84.69  E-value=0.75  Score=31.94  Aligned_cols=63  Identities=10%  Similarity=0.178  Sum_probs=35.3

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      -++.||-.+|+-|......+.+.....+.+.|+.+..+.... ...+++.  ..= .+.++ .+|+..
T Consensus        21 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~--~~P-t~~~~-~~G~~~   84 (105)
T 4euy_A           21 VLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVF--TGP-TVLLF-YNGKEI   84 (105)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------C--CCC-EEEEE-ETTEEE
T ss_pred             EEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCC--CCC-EEEEE-eCCeEE
Confidence            456789999999999998888775434567776554332222 2334442  111 23233 588764

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=84.55  E-value=1.6  Score=32.42  Aligned_cols=37  Identities=3%  Similarity=0.082  Sum_probs=26.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~  118 (206)
                      .-++.||-.+|+.|..++..|.+.-.  ....+.++.++
T Consensus        34 ~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs   72 (170)
T 2p5q_A           34 VLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFP   72 (170)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEE
Confidence            45778889999999998888766522  11237777664

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=84.38  E-value=1.6  Score=33.69  Aligned_cols=37  Identities=5%  Similarity=-0.093  Sum_probs=26.1

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~  118 (206)
                      .-++.||-.+||.|..++..|.+.-.  ....+.++.++
T Consensus        51 ~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is   89 (185)
T 2gs3_A           51 VCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFP   89 (185)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence            45777899999999999888766521  11347777764

>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5

Probab=84.28  E-value=3.6  Score=32.18  Aligned_cols=74  Identities=12%  Similarity=0.075  Sum_probs=45.2

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      .++++|...||.|.+..-.|...+.   .++.+.+.-...  .......+++   ...+-++..||.++.++.|+++-+.
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~~~g~~l~eS~aI~~yL~   75 (218)
T 1r5a_A            2 TTVLYYLPASPPCRSVLLLAKMIGV---ELDLKVLNIMEGEQLKPDFVELNP---QHCIPTMDDHGLVLWESRVILSYLV   75 (218)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTC---CEEEEECCTTTTGGGSHHHHTTCT---TCCSSEEEETTEEEECHHHHHHHHH
T ss_pred             eEEEEeCCCChhHHHHHHHHHHcCC---CCeEEecCcccccccCHHHHhhCC---CCCcCEEEECCEEEEcHHHHHHHHH
Confidence            3689999999999876666665532   355554432111  1111222332   2334455678999999999998776


Q ss_pred             Hc
Q 028608          161 EV  162 (206)
Q Consensus       161 ~l  162 (206)
                      ..
T Consensus        76 ~~   77 (218)
T 1r5a_A           76 SA   77 (218)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=84.20  E-value=1  Score=31.87  Aligned_cols=64  Identities=11%  Similarity=0.164  Sum_probs=37.8

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT  147 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~  147 (206)
                      ..-++.||..+|+.|......+.+.... .+.+.|+.+..+.... ...+++..  .= .+.+++.+|.
T Consensus        22 ~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~P-t~~~~~~~~~   87 (122)
T 3aps_A           22 THWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKA--YP-SVKLYQYERA   87 (122)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCS--SS-EEEEEEEEGG
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCc--cc-eEEEEeCCCc
Confidence            3467899999999999998888765321 1356666554433222 34566631  21 2435555544

>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}

Probab=84.09  E-value=1.7  Score=34.68  Aligned_cols=82  Identities=12%  Similarity=0.108  Sum_probs=46.4

Q ss_pred             CCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEE-eCCeEEehHHHH
Q 028608           77 PSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAF  155 (206)
Q Consensus        77 ~~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~  155 (206)
                      .+.....++++|...||+|.+..-.|...+. .=.+..+++........+...+.+   ...+-++. .||.++.++.|+
T Consensus        16 ~~~~~~m~~Ly~~~~sp~~~~vr~~L~~~gi-~~e~~~v~~~~~~~~~~~~~~~~P---~g~vPvL~~~~g~~l~eS~aI   91 (230)
T 4hz2_A           16 ENLYFQSMRIYGMNGSGNCWKAAQILSLTGH-DFEWVETSSGAAGTRSADFLALNA---IGKVPVVVLDDGTALRESNAI   91 (230)
T ss_dssp             ------CCEEEECTTCHHHHHHHHHHHHTTC-CCEEEECCSSTTTTTSHHHHHHCT---TCCSCEEECTTSCEEECHHHH
T ss_pred             hhhhhhhheeeCCCCCccHHHHHHHHHHcCC-CceEEEecCCCCccCCHHHHhhCC---CCCCCEEEecCCEEeeCHHHH
Confidence            3344456899999999999988777766543 123334444321110001111111   23455666 789999999999


Q ss_pred             HHHHHHc
Q 028608          156 RRLYEEV  162 (206)
Q Consensus       156 ~~il~~l  162 (206)
                      ++-+...
T Consensus        92 ~~yL~~~   98 (230)
T 4hz2_A           92 LLHFAEG   98 (230)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhcc
Confidence            9888764

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=84.06  E-value=2.1  Score=33.87  Aligned_cols=39  Identities=10%  Similarity=0.222  Sum_probs=26.7

Q ss_pred             CCCceEEEEcCCChhhHHHHHH------HHhhcccCCCEEEEeCC
Q 028608           80 ENWKIKMLYDGDCPLCMREVNM------LKERNKQYGTIKFVDIS  118 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~------L~r~d~~~~~I~fvdi~  118 (206)
                      ....++.|+|=.||.|.+.-..      +.+......++.++++.
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~   65 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVE   65 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECS
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecc
Confidence            3457899999999999998643      33333223567777654

>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A*

Probab=84.04  E-value=2.8  Score=32.39  Aligned_cols=74  Identities=15%  Similarity=0.127  Sum_probs=45.4

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      +++++|...||.|.+..-.|...+.   .++.+.+.-.....  .....+++   ...+-++..+|.++.++.|+++-+.
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~~~~~P---~g~vP~L~~~g~~l~eS~aI~~yL~   75 (211)
T 1gnw_A            2 GIKVFGHPASIATRRVLIALHEKNL---DFELVHVELKDGEHKKEPFLSRNP---FGQVPAFEDGDLKLFESRAITQYIA   75 (211)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCGGGTGGGSTTGGGTCT---TCCSCEEEETTEEEECHHHHHHHHH
T ss_pred             eeEEEeCCCCcchHHHHHHHHhcCC---CcEEEEeccccccccCHHHHHhCC---CCCCCEEEECCEEEeCHHHHHHHHH
Confidence            4789999999999987777766543   34444443221110  01111222   2345555568999999999998766


Q ss_pred             Hc
Q 028608          161 EV  162 (206)
Q Consensus       161 ~l  162 (206)
                      ..
T Consensus        76 ~~   77 (211)
T 1gnw_A           76 HR   77 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=83.97  E-value=1.4  Score=34.66  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=26.7

Q ss_pred             CceEEEE-cCCChhhHHHHHHHHhhcc--cCCCEEEEeCCCh
Q 028608           82 WKIKMLY-DGDCPLCMREVNMLKERNK--QYGTIKFVDISSD  120 (206)
Q Consensus        82 ~~l~VlY-DG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s~  120 (206)
                      .-++.|| -.+||.|..++..|.+.-.  ....+.++.++.+
T Consensus        38 ~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D   79 (202)
T 1uul_A           38 WLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMD   79 (202)
T ss_dssp             EEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             eEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3466677 8899999999988876532  1245777766554

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=83.82  E-value=5.2  Score=31.12  Aligned_cols=73  Identities=16%  Similarity=0.240  Sum_probs=45.3

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV  162 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l  162 (206)
                      .+++|+...||+|.+..-.|...+.. -.+..+++......-++   +++   .+.+-++..||.++..+.|+++-+...
T Consensus         3 Mm~LY~~~~sP~~~rvr~~L~e~gi~-~e~~~v~~~~~~~~~~~---~nP---~g~vPvL~~~~~~l~ES~aI~~yL~~~   75 (210)
T 4hoj_A            3 MMTLYSGITCPFSHRCRFVLYEKGMD-FEIKDIDIYNKPEDLAV---MNP---YNQVPVLVERDLVLHESNIINEYIDER   75 (210)
T ss_dssp             -CEEEECTTCHHHHHHHHHHHHHTCC-CEEEECCTTSCCHHHHH---HCT---TCCSCEEEETTEEEESHHHHHHHHHHH
T ss_pred             eEEEecCCCChHHHHHHHHHHHcCCC-CEEEEeCCCCCCHHHHH---HCC---CCCCcEEEECCEEEeccHHHHHHHHHh
Confidence            56888899999999877677666431 23334444332211111   122   234556667999999999999877664

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=83.63  E-value=1.3  Score=33.82  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=17.6

Q ss_pred             CceEEEEcCCChhhHHHHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVNML  102 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L  102 (206)
                      -.+++|+|=.||.|......+
T Consensus        29 v~i~~f~D~~Cp~C~~~~~~~   49 (175)
T 1z6m_A           29 VKMIEFINVRCPYCRKWFEES   49 (175)
T ss_dssp             EEEEEEECTTCHHHHHHHHHH
T ss_pred             eEEEEEECCCCcchHHHHHHH
Confidence            368899999999999988543

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=83.51  E-value=1.1  Score=34.25  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=19.8

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhh
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKER  105 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~  105 (206)
                      .-++.||-.+|+.|..++..|.+.
T Consensus        61 ~vlv~F~a~~C~~C~~~~~~l~~l   84 (183)
T 3lwa_A           61 VVILNAWGQWCAPCRSESDDLQII   84 (183)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEEECCcCHhHHHHHHHHHHH
Confidence            456778999999999998877665

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=83.25  E-value=1.7  Score=38.92  Aligned_cols=76  Identities=12%  Similarity=0.205  Sum_probs=48.0

Q ss_pred             CCCCceEEEEcCCChhhHHHHH-HHHhhcccCCCEEEEeCCC---h-hhhH-HH-hCCCChhcccceEEEEEeCCeEEeh
Q 028608           79 PENWKIKMLYDGDCPLCMREVN-MLKERNKQYGTIKFVDISS---D-EYSI-EE-NQGLDYKTVMGSIHAIVSDGTVVTD  151 (206)
Q Consensus        79 ~~~~~l~VlYDG~CplC~~~v~-~L~r~d~~~~~I~fvdi~s---~-~~~~-l~-~~gld~e~~~~~lhvv~~dG~v~~G  151 (206)
                      ....+++||.=..||+|.+..+ +|.++......+..+++..   . ..+. +. ..|.      ..+-.+--+|+.+.|
T Consensus       258 I~~~~VvVYsk~~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG~------~TVPqVFI~Gk~IGG  331 (362)
T 2jad_A          258 IAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQ------RTVPNIYINGKHIGG  331 (362)
T ss_dssp             HHTCSEEEEECTTCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHCC------CSSCEEEETTEEEES
T ss_pred             hccCCEEEEEcCCCcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHCC------CCcCEEEECCEEEEC
Confidence            4567899999999999999987 6776654345566655431   1 1111 21 1232      122234459999999


Q ss_pred             HHHHHHHHH
Q 028608          152 VEAFRRLYE  160 (206)
Q Consensus       152 ~dA~~~il~  160 (206)
                      .|-+.++.+
T Consensus       332 ~DdL~~L~~  340 (362)
T 2jad_A          332 NDDLQELRE  340 (362)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHhhh
Confidence            997777654

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=82.91  E-value=1.5  Score=33.15  Aligned_cols=36  Identities=8%  Similarity=0.106  Sum_probs=25.4

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~  118 (206)
                      .-++.||..+|+.|. ++..|.+.-.  ....+.++.++
T Consensus        34 ~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs   71 (171)
T 3cmi_A           34 VVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFP   71 (171)
T ss_dssp             EEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEE
Confidence            457888999999999 8887766521  11247777664

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=83.47  E-value=0.24  Score=33.70  Aligned_cols=40  Identities=23%  Similarity=0.405  Sum_probs=28.0

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeCCCh
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDISSD  120 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi~s~  120 (206)
                      ..-++.||..+||.|......+.+..... +.+.|+.+..+
T Consensus        20 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~   60 (106)
T 2yj7_A           20 KPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVD   60 (106)
Confidence            34578899999999999988887653322 25666665544

>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*

Probab=82.77  E-value=5.1  Score=32.06  Aligned_cols=74  Identities=8%  Similarity=0.063  Sum_probs=44.1

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      .++++|...||.|.+..-.|...+.   .++.+.+.-..+  .......+++   .+.+-++..||.++.++.|+++-+.
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi---~ye~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~d~g~~l~eS~aI~~YL~   75 (244)
T 1ljr_A            2 GLELFLDLVSQPSRAVYIFAKKNGI---PLELRTVDLVKGQHKSKEFLQINS---LGKLPTLKDGDFILTESSAILIYLS   75 (244)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTC---CCEEEECCTTTTGGGSHHHHTTCT---TCCSCEEEETTEEEECHHHHHHHHH
T ss_pred             eEEEEecCCCcchHHHHHHHHHcCC---CCeEEEecccccccCCHHHHHhCC---CCcCcEEEECCEEEEchHHHHHHHH
Confidence            3688999999999886556655433   344444332111  1111222332   2345566678999999999998665


Q ss_pred             Hc
Q 028608          161 EV  162 (206)
Q Consensus       161 ~l  162 (206)
                      ..
T Consensus        76 ~~   77 (244)
T 1ljr_A           76 CK   77 (244)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=82.76  E-value=2.9  Score=36.97  Aligned_cols=76  Identities=11%  Similarity=0.213  Sum_probs=45.8

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEE-eC--CeEEehHHHHHH
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIV-SD--GTVVTDVEAFRR  157 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~-~d--G~v~~G~dA~~~  157 (206)
                      +.+++++|...||.|.+..-.|...+.   .++.+.+.-..........+++   ...+-++. .+  |.++..+.|+++
T Consensus        24 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~~nP---~g~vP~L~~~~~~g~~l~eS~aI~~   97 (471)
T 4ags_A           24 ARALKLYVSATCPFCHRVEIVAREKQV---SYDRVAVGLREEMPQWYKQINP---RETVPTLEVGNADKRFMFESMLIAQ   97 (471)
T ss_dssp             -CCEEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCCGGGCCHHHHHHCT---TCCSCEEEECSSSCEEEESHHHHHH
T ss_pred             CCceEEECCCCCchHHHHHHHHHHcCC---CCEEEEeCCCCCccHHHHhhCC---CCccCeEEECCcCeEEEecHHHHHH
Confidence            446899999999999988877776643   3555544432111100111122   12333443 44  589999999998


Q ss_pred             HHHHc
Q 028608          158 LYEEV  162 (206)
Q Consensus       158 il~~l  162 (206)
                      -+...
T Consensus        98 yL~~~  102 (471)
T 4ags_A           98 YLDNS  102 (471)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            87775

>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A*

Probab=82.73  E-value=4.2  Score=31.44  Aligned_cols=73  Identities=12%  Similarity=0.103  Sum_probs=45.9

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh--HHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS--IEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~--~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      ++++|...||.|.+..-.+...+.   .++.+.+.-....  ......+++   ...+-++..||.++..+.|+++-+..
T Consensus         2 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~e~~~v~~~~~~~~~~~~~~~~P---~g~vP~L~~~g~~l~eS~aI~~yL~~   75 (209)
T 3ein_A            2 VDFYYLPGSSPCRSVIMTAKAVGV---ELNKKLLNLQAGEHLKPEFLKINP---QHTIPTLVDNGFALWESRAIQVYLVE   75 (209)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCGGGTGGGSHHHHTTCT---TCCSCEEEETTEEEECHHHHHHHHHH
T ss_pred             eEEecCCCCccHHHHHHHHHHcCC---CcEEEEcccccCCcCCHHHHhcCC---CCCCCEEEECCEEEEcHHHHHHHHHH
Confidence            689999999999987777766543   3444444322211  112222333   23455666699999999999987766


Q ss_pred             c
Q 028608          162 V  162 (206)
Q Consensus       162 l  162 (206)
                      .
T Consensus        76 ~   76 (209)
T 3ein_A           76 K   76 (209)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=82.47  E-value=2.1  Score=32.81  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=26.4

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~  118 (206)
                      .-++.|+=.+||.|..++..|.+.-.  ....+.++.++
T Consensus        40 ~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is   78 (180)
T 3kij_A           40 VSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFP   78 (180)
T ss_dssp             EEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred             EEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEE
Confidence            45666778999999999888876532  12347787774

>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*

Probab=82.44  E-value=3.3  Score=31.84  Aligned_cols=73  Identities=14%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      +++++|...||.|.+..-.|...+.   .++.+.+.-...  .......+.+   ...+-++..+|.++.++.|+++-+.
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~~~~~P---~g~vP~L~~~g~~l~eS~aI~~yL~   75 (209)
T 1axd_A            2 PMKLYGAVMSWNLTRCATALEEAGS---DYEIVPINFATAEHKSPEHLVRNP---FGQVPALQDGDLYLFESRAICKYAA   75 (209)
T ss_dssp             CEEEESCTTCTTHHHHHHHHHHHTC---CEEEECCCTTTTGGGSHHHHTTCT---TCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             ceEEEeCCCCchHHHHHHHHHhcCC---CCEEEeccccccCcCChHHHHhCc---CCCCCeEEECCEEEecHHHHHHHHH
Confidence            4688888999999988777766543   355555443211  1111122322   2345555568999999999998665


Q ss_pred             H
Q 028608          161 E  161 (206)
Q Consensus       161 ~  161 (206)
                      .
T Consensus        76 ~   76 (209)
T 1axd_A           76 R   76 (209)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens}

Probab=82.44  E-value=3.4  Score=31.96  Aligned_cols=73  Identities=16%  Similarity=0.111  Sum_probs=45.9

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEE-eCCeEEehHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRRLY  159 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~il  159 (206)
                      .++++|...||.|.+..-.|...+.   .++.+.+.-..+  ...+...+++   ...+-++. .||.++.++.|+++-+
T Consensus         3 ~~~Ly~~~~s~~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~~~~~P---~g~vP~L~~d~g~~l~eS~aI~~yL   76 (210)
T 3m3m_A            3 LYKVYGDYRSGNCYKIKLMLNLLGL---PYEWQAVDILGGDTQTEAFLAKNP---NGKIPVLELEDGTCLWESNAILNFL   76 (210)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHTTC---CEEEEECCTTTTTTSSHHHHTTCT---TCCSCEEEETTSCEEECHHHHHHHH
T ss_pred             eEEEeCCCCCCcHHHHHHHHHHcCC---CCEEEEecCCCccccCHHHHhhCC---CCCCCEEEecCCEEEecHHHHHHHH
Confidence            4789999999999877767766543   455555442111  0011222322   23454555 6899999999999887


Q ss_pred             HH
Q 028608          160 EE  161 (206)
Q Consensus       160 ~~  161 (206)
                      ..
T Consensus        77 ~~   78 (210)
T 3m3m_A           77 AD   78 (210)
T ss_dssp             HT
T ss_pred             hc
Confidence            76

>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus}

Probab=82.38  E-value=6.1  Score=31.26  Aligned_cols=92  Identities=16%  Similarity=0.082  Sum_probs=47.3

Q ss_pred             hhcCCCCCCCCCcCCCCCCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceE
Q 028608           60 QGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSI  139 (206)
Q Consensus        60 ~~~~~~p~~~~~~~~~~~~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~l  139 (206)
                      ++.++++..+.+...   .+...+++++|...||.|.+..-.|...+.   .++.+.+..+.. + +...+.+   ...+
T Consensus         7 ~~~~~~~~~~~~~~~---~~~m~~~~Ly~~~~s~~~~~vr~~L~~~gi---~ye~~~v~~~~~-~-~~~~~nP---~g~v   75 (225)
T 2hnl_A            7 QAITSENSIKPKGKL---QPQMEKYTLTYFNGRGRAEVIRLLFALANV---SYEDNRITRDEW-K-YLKPRTP---FGHV   75 (225)
T ss_dssp             --------------------CCCCEEEEEESSSGGGHHHHHHHHHHTC---CCEEEEECHHHH-H-HHGGGSS---SSCS
T ss_pred             hhhhhhhHHHHHhhc---cccCCCeEEEEcCCCCchHHHHHHHHHCCC---CeeEEEeChhhh-H-HhccCCC---CCCC
Confidence            344555555555332   234557899998999999987777766543   344444432211 1 1112222   2344


Q ss_pred             EEEEeCCeEEehHHHHHHHHHHc
Q 028608          140 HAIVSDGTVVTDVEAFRRLYEEV  162 (206)
Q Consensus       140 hvv~~dG~v~~G~dA~~~il~~l  162 (206)
                      -++..||.++.++.|+++-+...
T Consensus        76 PvL~~~g~~l~eS~aI~~YL~~~   98 (225)
T 2hnl_A           76 PMLNVSGNVLGESHAIELLLGGR   98 (225)
T ss_dssp             CEEEETTEEEECHHHHHHHHHHH
T ss_pred             CEEEECCEEEecHHHHHHHHHHH
Confidence            45556899999999999877653

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=82.29  E-value=2.3  Score=33.49  Aligned_cols=49  Identities=12%  Similarity=0.251  Sum_probs=32.3

Q ss_pred             ceEEEEcC-CChhhHHHHHHHHhhcccCCCEEEEeCCChh--hhH-HHhCCCC
Q 028608           83 KIKMLYDG-DCPLCMREVNMLKERNKQYGTIKFVDISSDE--YSI-EENQGLD  131 (206)
Q Consensus        83 ~l~VlYDG-~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~--~~~-l~~~gld  131 (206)
                      .+++||+. +|+.|......+.+.....+.+.|+.+.-+.  ... ...+|+.
T Consensus        25 ~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~   77 (226)
T 1a8l_A           25 KLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRID   77 (226)
T ss_dssp             EEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCC
T ss_pred             EEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCC
Confidence            45778888 9999999999888764334566665444332  222 4466764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=81.88  E-value=1.7  Score=31.16  Aligned_cols=56  Identities=11%  Similarity=0.106  Sum_probs=34.9

Q ss_pred             CCCCCCCcCCCCCCCC---CCceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCCh
Q 028608           65 DPLTSKKEYDKDPSPE---NWKIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSD  120 (206)
Q Consensus        65 ~p~~~~~~~~~~~~~~---~~~l~VlYDG~CplC~~~v~~L~r~d~~---~~~I~fvdi~s~  120 (206)
                      +++....+..++....   ..-++.||..+|+.|......+.+....   .+.+.|+.+..+
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~   68 (133)
T 2dj3_A            7 GPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT   68 (133)
T ss_dssp             CSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTT
T ss_pred             CceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence            3444444444444332   2346778999999999998887765221   146888766544

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae}

Probab=81.86  E-value=7.5  Score=30.29  Aligned_cols=73  Identities=12%  Similarity=0.197  Sum_probs=45.7

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV  162 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l  162 (206)
                      .++++|...||.|.+..-.|...+.   .++.+.+.-....+ ....+++   ...+-++..+|.++.++.|+++-+...
T Consensus         6 ~~~Ly~~~~sp~~~~v~~~L~~~gi---~~e~~~v~~~~~~~-~~~~~~P---~g~vP~L~~~g~~l~eS~aI~~yL~~~   78 (216)
T 3lyk_A            6 VMTLFSNKDDIYCHQVKIVLAEKGV---LYENAEVDLQALPE-DLMELNP---YGTVPTLVDRDLVLFNSRIIMEYLDER   78 (216)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTSCCH-HHHHHCT---TCCSCEEEETTEEEESHHHHHHHHHHH
T ss_pred             eEEEEeCCCChhHHHHHHHHHHcCC---CcEEEeCCcccCcH-HHHhhCC---CCCcCeEEECCeEecCHHHHHHHHHHh
Confidence            4789999999999988777776653   34444443211111 0111111   233446667899999999999877664

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=81.76  E-value=1.3  Score=33.96  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=26.5

Q ss_pred             CceEEEEcCC-ChhhHHHHHHHHhhcccCCCEEEEeCCCh
Q 028608           82 WKIKMLYDGD-CPLCMREVNMLKERNKQYGTIKFVDISSD  120 (206)
Q Consensus        82 ~~l~VlYDG~-CplC~~~v~~L~r~d~~~~~I~fvdi~s~  120 (206)
                      .-++.||-++ |+.|..++..|.+.-.. ..+.++.++.+
T Consensus        46 ~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D   84 (175)
T 1xvq_A           46 SVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKD   84 (175)
T ss_dssp             CEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             EEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECC
Confidence            3466677777 99999999988776432 45666665543

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=81.70  E-value=2.2  Score=31.66  Aligned_cols=34  Identities=12%  Similarity=0.337  Sum_probs=29.0

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD  120 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~  120 (206)
                      ++||+-..|+.|.+..+||.+.+   -.+.++++..+
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~g---i~~~~~di~~~   35 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRHD---VVFQEHNIMTS   35 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTT---CCEEEEETTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcC---CCeEEEecccC
Confidence            68899999999999999998864   46899999754

>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*

Probab=81.60  E-value=3.6  Score=31.86  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=44.7

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh--hhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE--YSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~--~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      +++++|...||.|.+..-.|...+.   .++.+.+.-..  ........+.+   ...+-++..+|.++.++.|+++-+.
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~~~~~P---~g~vP~L~~~g~~l~eS~aI~~yL~   75 (214)
T 2v6k_A            2 KMKLYNFWRSGTSHRLRIALNLKGV---PYEYLAVHLGKEEHLKDAFKALNP---QQLVPALDTGAQVLIQSPAIIEWLE   75 (214)
T ss_dssp             CCEEEECSSCHHHHHHHHHHHHHTC---CCEEEECCTTTTGGGSHHHHHHCT---TCCSCEEECSSCEEECHHHHHHHHH
T ss_pred             eeEEEecCCCCcHHHHHHHHHHCCC---CceEEecCCCcccccCHHHHhcCC---CCcCCEEEECCEEEecHHHHHHHHH
Confidence            4688888899999987777766643   34444443211  11001111111   2345566678899999999999776


Q ss_pred             Hc
Q 028608          161 EV  162 (206)
Q Consensus       161 ~l  162 (206)
                      ..
T Consensus        76 ~~   77 (214)
T 2v6k_A           76 EQ   77 (214)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori}

Probab=81.42  E-value=3.5  Score=32.24  Aligned_cols=74  Identities=9%  Similarity=-0.007  Sum_probs=44.3

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC--ChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS--SDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~--s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      +++++|...||.|.+..-.+...+.   .++.+.+.  ..+........+++   ...+-++..+|.++.++.|+++-+.
T Consensus         3 ~~~Ly~~~~s~~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~~~g~~l~eS~aI~~yL~   76 (216)
T 3ay8_A            3 SLKLYHFPVSGPSRGALLAARAIGI---PIQIEIVNLFKKEQLQESFLKLNP---QHCVPTLDDNNFVLWESRAIACYLA   76 (216)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTCGGGCCHHHHHHSS---SCCSSEEEETTEEEECHHHHHHHHH
T ss_pred             ceEEecCCCCccHHHHHHHHHHcCC---CceEEEeccccccccCHHHHhhCC---CCCCCeEEECCEEEEcHHHHHHHHH
Confidence            4689999999999987777766543   34444443  21110001111111   2334455568999999999998776


Q ss_pred             Hc
Q 028608          161 EV  162 (206)
Q Consensus       161 ~l  162 (206)
                      ..
T Consensus        77 ~~   78 (216)
T 3ay8_A           77 DK   78 (216)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5

Probab=81.37  E-value=4.5  Score=31.35  Aligned_cols=72  Identities=18%  Similarity=0.183  Sum_probs=43.3

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC--ChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS--SDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~--s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      ++++|...||.|.+..-.|...+.   .++.+.+.  ..+..+ ....+++   ...+-++..||.++.++.|+++-+..
T Consensus         1 ~~Ly~~~~s~~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~-~~~~~nP---~g~vP~L~~~g~~l~eS~aI~~yL~~   73 (210)
T 1v2a_A            1 MDYYYSLISPPCQSAILLAKKLGI---TLNLKKTNVHDPVERD-ALTKLNP---QHTIPTLVDNGHVVWESYAIVLYLVE   73 (210)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTCHHHHH-HHHHHCT---TCCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             CeEEeCCCCccHHHHHHHHHHcCC---CcEEEECCcccchhhH-HHHHhCC---CCCcCeEEECCEEEEcHHHHHHHHHH
Confidence            478999999999986666666543   34444443  211111 1111111   23344555789999999999997765


Q ss_pred             c
Q 028608          162 V  162 (206)
Q Consensus       162 l  162 (206)
                      .
T Consensus        74 ~   74 (210)
T 1v2a_A           74 T   74 (210)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=81.34  E-value=3.4  Score=30.68  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=25.1

Q ss_pred             CceEEEEcCCChh-hHHHHHHHHhhcccC------CCEEEEeCC
Q 028608           82 WKIKMLYDGDCPL-CMREVNMLKERNKQY------GTIKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~Cpl-C~~~v~~L~r~d~~~------~~I~fvdi~  118 (206)
                      .-++.||-.+|+- |..++..|.+.-...      ..+.++.++
T Consensus        28 ~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is   71 (171)
T 2rli_A           28 WVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFIT   71 (171)
T ss_dssp             EEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEE
T ss_pred             EEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEE
Confidence            4567788999995 999988776653211      357666554

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.33  E-value=1  Score=32.20  Aligned_cols=49  Identities=12%  Similarity=0.224  Sum_probs=30.2

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccC-----CCEEEEeCCChhhhH-HHhCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQY-----GTIKFVDISSDEYSI-EENQGL  130 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~-----~~I~fvdi~s~~~~~-l~~~gl  130 (206)
                      .-++.||..+|+.|......+.+.....     +.+.|+.+..+.... .+.+++
T Consensus        27 ~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v   81 (133)
T 1x5d_A           27 VWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGI   81 (133)
T ss_dssp             EEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTC
T ss_pred             eEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCC
Confidence            4578899999999998887765542211     457776554433222 234555

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=81.24  E-value=2.7  Score=33.60  Aligned_cols=19  Identities=21%  Similarity=0.282  Sum_probs=16.1

Q ss_pred             CceEEEEcCCChhhHHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVN  100 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~  100 (206)
                      -.+++|+|=.||.|..+-.
T Consensus        31 vtvvef~D~~CP~C~~~~~   49 (202)
T 3gha_A           31 VTVVEFGDYKCPSCKVFNS   49 (202)
T ss_dssp             EEEEEEECTTCHHHHHHHH
T ss_pred             EEEEEEECCCChhHHHHHH
Confidence            4689999999999998743

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=81.19  E-value=1.4  Score=31.76  Aligned_cols=63  Identities=11%  Similarity=0.205  Sum_probs=39.0

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      -++.||..+|+-|......+.+.... .+.+.++.+.-+.... .+.+|+..  .= .+.++ .+|++.
T Consensus        45 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~--~P-t~~~~-~~G~~~  109 (128)
T 3ul3_B           45 IVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKS--LP-TIILL-KNKTML  109 (128)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCS--SS-EEEEE-ETTEEE
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCC--cC-EEEEE-ECCEEE
Confidence            45679999999999999888766321 1457777665544333 34566531  21 23344 688754

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=81.08  E-value=1  Score=34.77  Aligned_cols=38  Identities=16%  Similarity=0.364  Sum_probs=24.6

Q ss_pred             CceEEEE-cCCChhhHHHHHHHHhhccc--CCCEEEEeCCC
Q 028608           82 WKIKMLY-DGDCPLCMREVNMLKERNKQ--YGTIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlY-DG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s  119 (206)
                      .-++.|| -.+|+.|..++..|.+.-..  ...+.++.++.
T Consensus        33 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~   73 (187)
T 1we0_A           33 WSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVST   73 (187)
T ss_dssp             EEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEES
T ss_pred             CEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence            3456666 89999999998887665211  12466665544

>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5

Probab=81.08  E-value=3.7  Score=32.11  Aligned_cols=74  Identities=16%  Similarity=0.199  Sum_probs=43.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh---hhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD---EYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL  158 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~---~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i  158 (206)
                      .++++|+...||.|.+..-.|...+.   .++.+.+.-.   ...+ ....+++   ...+-++..||.++.++.|+++-
T Consensus         7 ~~~~Ly~~~~s~~~~~v~~~L~~~gi---~~e~~~v~~~~~~~~~~-~~~~~nP---~g~vP~L~~~g~~l~eS~aI~~y   79 (221)
T 1e6b_A            7 EKLKLYSYWRSSCAHRVRIALALKGL---DYEYIPVNLLKGDQFDS-DFKKINP---MGTVPALVDGDVVINDSFAIIMY   79 (221)
T ss_dssp             -CCEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCTTTTGGGCH-HHHHHCT---TCCSSEEEETTEEEESHHHHHHH
T ss_pred             CCeEEEecCCCCchHHHHHHHHHcCC---CCEEEEecCCcccccCH-HHHhhCC---CCCCCEEEECCEEEeeHHHHHHH
Confidence            35788888899999987666665543   3444444321   1111 1111111   23344555689999999999987


Q ss_pred             HHHc
Q 028608          159 YEEV  162 (206)
Q Consensus       159 l~~l  162 (206)
                      +...
T Consensus        80 L~~~   83 (221)
T 1e6b_A           80 LDEK   83 (221)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7654

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=81.00  E-value=1.2  Score=32.84  Aligned_cols=66  Identities=20%  Similarity=0.297  Sum_probs=38.1

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV  149 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~  149 (206)
                      +..-++.||..+|+.|......+.+.... .+.+.|+.+.-+.... ...+++..  .= .+ ++..+|+..
T Consensus        24 ~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~P-t~-~~~~~G~~~   91 (140)
T 3hz4_A           24 KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQG--TP-TF-KFFCHGRPV   91 (140)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCE--ES-EE-EEEETTEEE
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCc--CC-EE-EEEeCCcEE
Confidence            34457889999999999998877665321 2336655444332222 34455532  21 23 334788753

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=80.83  E-value=1.6  Score=32.63  Aligned_cols=38  Identities=8%  Similarity=0.192  Sum_probs=24.2

Q ss_pred             CceEEEEcCCCh-hhHHHHHHHHhhc----ccCCCEEEEeCCC
Q 028608           82 WKIKMLYDGDCP-LCMREVNMLKERN----KQYGTIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlYDG~Cp-lC~~~v~~L~r~d----~~~~~I~fvdi~s  119 (206)
                      .-++.||-.+|+ .|..++..|.+..    .....+.++.++.
T Consensus        35 ~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~   77 (174)
T 1xzo_A           35 VWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSV   77 (174)
T ss_dssp             CEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred             EEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEe
Confidence            457889999999 9977766665441    1111366666553

>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A

Probab=80.80  E-value=7.2  Score=31.57  Aligned_cols=75  Identities=9%  Similarity=0.003  Sum_probs=45.0

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEe---CCeEEehHHHH
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVS---DGTVVTDVEAF  155 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~---dG~v~~G~dA~  155 (206)
                      ..+++++|...||.|.+..-.+...+.   .+..+.+.-..+  .......+++   ...+-++..   +|.++..+.|+
T Consensus        17 m~~~~Ly~~~~~p~~~~v~~~l~~~gi---~~e~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~~~~~~g~~l~ES~aI   90 (260)
T 1k0d_A           17 LEGYTLFSHRSAPNGFKVAIVLSELGF---HYNTIFLDFNLGEHRAPEFVSVNP---NARVPALIDHGMDNLSIWESGAI   90 (260)
T ss_dssp             SSSEEEEECTTCHHHHHHHHHHHHTTC---CEEEEECCTTTTGGGSHHHHTTCT---TCCSCEEEEGGGTTEEEESHHHH
T ss_pred             CCcEEEEcCCCCccHHHHHHHHHHCCC---CceEEEecCccccccCHHHHhhCC---CCCcCEEEecCCCCeEEECHHHH
Confidence            356899999999999877666665532   355544432111  1111222332   123445444   78999999999


Q ss_pred             HHHHHH
Q 028608          156 RRLYEE  161 (206)
Q Consensus       156 ~~il~~  161 (206)
                      ++-+..
T Consensus        91 ~~YL~~   96 (260)
T 1k0d_A           91 LLHLVN   96 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            976654

>4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria}

Probab=80.75  E-value=3  Score=33.05  Aligned_cols=75  Identities=15%  Similarity=0.047  Sum_probs=46.6

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il  159 (206)
                      ..++++|...||+|.+..-.|...+.   .++.+.+.-..+  .......+.+   ...+-++..||.++.++.|+++-+
T Consensus        22 ~m~~Ly~~~~sp~~~~vr~~L~~~gi---~ye~~~v~~~~~~~~~~~~~~~~P---~g~vP~L~~~g~~l~eS~aI~~yL   95 (229)
T 4iel_A           22 SMLHILGKIPSINVRKVLWLCTELNL---PFEQEDWGAGFRTTNDPAYLALNP---NGLVPVIKDDGFVLWESNTIIRYL   95 (229)
T ss_dssp             CCEEEESCTTCHHHHHHHHHHHHHTC---CEEEECCC-------CHHHHTTCT---TCCSCEEEETTEEEECHHHHHHHH
T ss_pred             ceEEEecCCCCcchHHHHHHHHHCCC---CcEEEEecCCcCCcCCHHHHhcCC---CCCCCEEEECCEEEEeHHHHHHHH
Confidence            45788889999999988777766643   455555442111  0111222333   234556666899999999999877


Q ss_pred             HHc
Q 028608          160 EEV  162 (206)
Q Consensus       160 ~~l  162 (206)
                      ...
T Consensus        96 ~~~   98 (229)
T 4iel_A           96 ANR   98 (229)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=80.60  E-value=1.8  Score=32.80  Aligned_cols=38  Identities=8%  Similarity=0.162  Sum_probs=24.7

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhc---ccCCCEEEEeC
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERN---KQYGTIKFVDI  117 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d---~~~~~I~fvdi  117 (206)
                      ....++.|+|=.||.|...-..+.++.   .....+.+..+
T Consensus        21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   61 (184)
T 4dvc_A           21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   61 (184)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEec
Confidence            334688899999999998866554442   11345555543

>4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A*

Probab=80.50  E-value=3.8  Score=31.70  Aligned_cols=75  Identities=12%  Similarity=0.206  Sum_probs=48.9

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-HHHhCCCChhcccceEEEEE-eCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-IEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~l~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~il~~  161 (206)
                      ++++|...||+|.+..-.|...+. .-.+..+++...... ......+.+   .+.+-++. .||.++.++.|+++-+..
T Consensus         3 ~~Ly~~~~s~~~~~v~~~L~~~gi-~y~~~~v~~~~~~~~~~~~~~~~nP---~g~vP~L~~~~g~~l~eS~aI~~yL~~   78 (214)
T 4id0_A            3 LTLFHNPASPYVRKVMVLLHETGQ-LNRVALQASQLSPVAPDAALNQDNP---LGKIPALRLDNGQVLYDSRVILDYLDQ   78 (214)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHTC-GGGEEEEECCCCSSSCCSSCCTTCT---TCCSSEEECTTSCEECSHHHHHHHHHH
T ss_pred             eEEecCCCCChHHHHHHHHHHcCC-CcceEEeecccCccCCcHHHHhcCC---CcCCCeEEecCCcEeecHHHHHHHHHH
Confidence            689999999999988777777654 234667776532100 001122222   23455665 789999999999987776


Q ss_pred             c
Q 028608          162 V  162 (206)
Q Consensus       162 l  162 (206)
                      .
T Consensus        79 ~   79 (214)
T 4id0_A           79 Q   79 (214)
T ss_dssp             T
T ss_pred             h
Confidence            5

>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}

Probab=80.48  E-value=2.9  Score=32.91  Aligned_cols=74  Identities=20%  Similarity=0.217  Sum_probs=44.5

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      +++||...||.|++..-.+...+. .-.+..+++...+....+...+++   .+.+-++..||.++..+.|+++-+..
T Consensus         3 mkLY~~~~S~~~~~v~~~l~~~gi-~~e~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~d~g~~l~eS~aI~~YL~~   76 (216)
T 3vk9_A            3 IDLYYVPGSAPCRAVLLTAKALNL-NLNLKLVDLHHGEQLKPEYLKLNP---QHTVPTLVDDGLSIWESRAIITYLVN   76 (216)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTC-CCEEEECCGGGTGGGSHHHHHHCT---TCCSCEEEETTEEECCHHHHHHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHcCC-CCEEEEeCCCCCccCCHHHHHhCC---CCccceEecCCceeechHHHHHHHHH
Confidence            689999999999976666666543 123444444332211111111222   23455666799999999999987654

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=80.47  E-value=5.9  Score=28.21  Aligned_cols=72  Identities=18%  Similarity=0.261  Sum_probs=45.4

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh-----hhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD-----EYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR  157 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~-----~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~  157 (206)
                      .++.||=.+||-|......+.+...   .+.++++..+     .....+.+|+.  ..=+ + ++  +|+.+.|....-.
T Consensus        15 ~vV~F~A~WC~~C~~~~p~~~~~a~---~~~~v~~~~~~~~~~~~~l~~~~~V~--~~PT-~-~i--~G~~~~G~~~~~~   85 (106)
T 3kp8_A           15 GGTMYGAYWCPHCQDQKELFGAAFD---QVPYVECSPNGPGTPQAQECTEAGIT--SYPT-W-II--NGRTYTGVRSLEA   85 (106)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGG---GSCEEESCTTCTTSCCCHHHHHTTCC--SSSE-E-EE--TTEEEESCCCHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHH---hCCEEEEecccccchhHHHHHHcCCe--EeCE-E-EE--CCEEecCCCCHHH
Confidence            3689999999999999998877643   3457777622     11223455653  1212 3 33  8998888766555


Q ss_pred             HHHHcC
Q 028608          158 LYEEVG  163 (206)
Q Consensus       158 il~~lp  163 (206)
                      +...++
T Consensus        86 l~~~~~   91 (106)
T 3kp8_A           86 LAVASG   91 (106)
T ss_dssp             HHHHHT
T ss_pred             HHHHhC
Confidence            555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	94.54
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	94.45
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	93.65
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	93.61
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	93.33
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	93.04
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	92.96
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	92.7
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	92.49
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	92.06
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	91.86
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	91.86
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	91.38
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	91.33
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	91.1
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	90.42
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	90.16
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	89.49
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	89.3
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	88.26
d1wjka_	100	Thioredoxin-like structure containing protein C330	88.09
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	87.3
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	86.56
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	86.46
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	86.03
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	85.98
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	85.43
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	85.03
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	83.69
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	82.6
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	82.16
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	82.13
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	82.1
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	81.84
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	80.78

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.54  E-value=0.047  Score=38.26  Aligned_cols=81  Identities=15%  Similarity=0.285  Sum_probs=50.2

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh-hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY-SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL  158 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~-~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i  158 (206)
                      ++.+++||-=..||+|.+..++|.+.......+.+.++..... ...+. .+....-...+-.+--+|+.+.|.+-+..+
T Consensus        10 ~~~~Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~-~l~~~~g~~tvPqIfi~g~~IGG~~el~~l   88 (105)
T d1ktea_          10 QPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQD-YLQQLTGARTVPRVFIGKECIGGCTDLESM   88 (105)
T ss_dssp             CTTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHH-HHHHHHSCCCSCEEEETTEEEESHHHHHHH
T ss_pred             ccCCEEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHH-HHhhccCCCcCcEEEECCEEEecHHHHHHH
Confidence            4567899999999999999999988764445677877643221 11110 000000011222334599999999987776


Q ss_pred             HHH
Q 028608          159 YEE  161 (206)
Q Consensus       159 l~~  161 (206)
                      ...
T Consensus        89 ~~~   91 (105)
T d1ktea_          89 HKR   91 (105)
T ss_dssp             HHH
T ss_pred             HHC
Confidence            554

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.14  Score=33.57  Aligned_cols=70  Identities=10%  Similarity=0.225  Sum_probs=45.9

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEE-EEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHA-IVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhv-v~~dG~v~~G~dA~~~il~~  161 (206)
                      +.+|+-..||+|.+....|..++.   .++.+.+....... .+.   ++   ...+-+ ++.||++..++.+++.-+..
T Consensus         1 mkLY~~~~cP~~~rvr~~l~~kgi---~~e~~~~~~~~~~~~~~~---~p---~~~VP~L~~~dg~~i~eS~~I~~yLd~   71 (75)
T d1g7oa2           1 MKLYIYDHCPYCLKARMIFGLKNI---PVELHVLLNDDAETPTRM---VG---QKQVPILQKDDSRYMPESMDIVHYVDK   71 (75)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTTTHHHHHH---HS---SSCCCEEEETTTEEEECHHHHHHHHHH
T ss_pred             CEEEccCCCCchHHHHHHHHHhCC---CcccccccccchHHHHHh---CC---CCceEEEEEcCCCEEecHHHHHHHHHH
Confidence            357888899999999999988765   24445444333222 221   11   122333 45789999999999987776


Q ss_pred             c
Q 028608          162 V  162 (206)
Q Consensus       162 l  162 (206)
                      +
T Consensus        72 ~   72 (75)
T d1g7oa2          72 L   72 (75)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=93.65  E-value=0.35  Score=31.54  Aligned_cols=72  Identities=17%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      ++++|....||+|.+..-.|..++.   .++.+.+.-.....  ++..+  .   .+.+-+++.||.++..+.|+++-+.
T Consensus         3 ~mkLy~~~~sp~~~rvr~~l~~kgi---~~e~~~v~~~~~~~~~~~~~~--~---~~~~p~l~~dg~~i~eS~~I~~YL~   74 (83)
T d1gwca2           3 DLKLLGAWPSPFVTRVKLALALKGL---SYEDVEEDLYKKSELLLKSNP--V---HKKIPVLIHNGAPVCESMIILQYID   74 (83)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTSCCHHHHHHST--T---TCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             eEEEEecCCChHHHHHHHHHHHCCC---CeEEEEEeccchhHHHHHHHh--c---cCCCceeecCCceEcCHHHHHHHHH
Confidence            4778888999999998888877754   35555544221111  22111  1   1223467789999999999998776


Q ss_pred             Hc
Q 028608          161 EV  162 (206)
Q Consensus       161 ~l  162 (206)
                      ..
T Consensus        75 e~   76 (83)
T d1gwca2          75 EV   76 (83)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.61  E-value=0.098  Score=34.65  Aligned_cols=73  Identities=16%  Similarity=0.208  Sum_probs=45.3

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC--ChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS--SDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~--s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      ++++|....||+|.+..-.|..++.   .++++.+.  ...........+.+   ..++-++..+|+++.++.|+++-+.
T Consensus         1 ~m~Ly~~~~sp~~~kv~~~L~~~gi---~~~~~~i~~~~~~~~~~~~~~~~p---~~~vPvL~~~~~~l~eS~aI~~yL~   74 (80)
T d1e6ba2           1 KLKLYSYWRSSCAHRVRIALALKGL---DYEYIPVNLLKGDQFDSDFKKINP---MGTVPALVDGDVVINDSFAIIMYLD   74 (80)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCTTTTGGGCHHHHHHCT---TCCSSEEEETTEEEESHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHhCC---CCEEEEEeccccccccHHHhhcCc---cccCCEEEECCEEEECHHHHHHHHH
Confidence            5688889999999997777776653   34555443  32211111111222   2334455578999999999988665


Q ss_pred             H
Q 028608          161 E  161 (206)
Q Consensus       161 ~  161 (206)
                      .
T Consensus        75 ~   75 (80)
T d1e6ba2          75 E   75 (80)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.17  Score=34.16  Aligned_cols=65  Identities=20%  Similarity=0.252  Sum_probs=42.9

Q ss_pred             CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        90 G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      |+||+|.+..-.|..++. .-.+..++....... ...  +++   .+.+-++..||.++..+.++..-+..
T Consensus        17 ~~cPf~~rv~~~L~~kgi-~~~~~~v~~~~~~~~-~~~--~nP---~~~vPvL~~~~~~i~eS~~I~~YLee   81 (86)
T d1k0ma2          17 GNCPFSQRLFMVLWLKGV-TFNVTTVDTKRRTET-VQK--LCP---GGELPFLLYGTEVHTDTNKIEEFLEA   81 (86)
T ss_dssp             CSCHHHHHHHHHHHHHTC-CCEEEEECTTSCCHH-HHH--HCT---TCCSSEEEETTEEEECHHHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHCC-CcEEEEeecccccHH-HHH--Hhc---cCceeEEEEcccccccHHHHHHHHHH
Confidence            789999999988888765 244566666543221 111  222   12344556799999999999887765

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.04  E-value=0.028  Score=41.66  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=28.3

Q ss_pred             CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC
Q 028608           80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI  117 (206)
Q Consensus        80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi  117 (206)
                      ....+++|.|=+||+|++.-.-+.++......+.++..
T Consensus        26 ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~   63 (150)
T d1t3ba1          26 EKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAF   63 (150)
T ss_dssp             CSEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEEC
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEe
Confidence            33468999999999999998888777543455666654

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.4  Score=32.88  Aligned_cols=75  Identities=13%  Similarity=0.118  Sum_probs=46.8

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEE-EEeCCeEEehHHHHHHHH
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHA-IVSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhv-v~~dG~v~~G~dA~~~il  159 (206)
                      +.++++|....||+|.+..-.|..+.. .-.+..+++.....   ....+.+.   +.+-+ ++.||.++.++.|++.-+
T Consensus        17 ~~~~~Ly~~~~sP~~~rv~~~l~~kgi-~~e~~~v~~~~~~~---~~~~~nP~---g~VPvL~~~dg~~i~eS~aI~~YL   89 (98)
T d1eema2          17 EGSIRIYSMRFCPFAERTRLVLKAKGI-RHEVININLKNKPE---WFFKKNPF---GLVPVLENSQGQLIYESAITCEYL   89 (98)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHHHTTC-CEEEEEBCTTSCCG---GGGGTCTT---CCSCEEEETTCCEEESHHHHHHHH
T ss_pred             CCcEEEEcCCCChHHHHHHHHHHHhCC-CCEEEEecccCCcH---HHHhhhcc---ccceeEEeCCCCEEcCHHHHHHHH
Confidence            447889989999999998888877653 12333444443211   12223332   22333 456899999999998876


Q ss_pred             HHc
Q 028608          160 EEV  162 (206)
Q Consensus       160 ~~l  162 (206)
                      ...
T Consensus        90 ~e~   92 (98)
T d1eema2          90 DEA   92 (98)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.032  Score=41.47  Aligned_cols=37  Identities=16%  Similarity=0.314  Sum_probs=27.4

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI  117 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi  117 (206)
                      ...+++|+|=.||+|++....+.+......++.|..+
T Consensus        27 k~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~   63 (156)
T d1eeja1          27 KHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAF   63 (156)
T ss_dssp             CEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEEC
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEec
Confidence            3467899999999999998888777543345666644

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.37  Score=31.35  Aligned_cols=72  Identities=8%  Similarity=0.083  Sum_probs=45.7

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC--CChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI--SSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi--~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      +++||+-.||+|++..-.+...+.   .++.+.+  ............+++.   ..+-++..+|.++..+.|+++-+..
T Consensus         3 m~LY~~~~sp~~r~v~~~l~e~gi---~~e~~~v~~~~~~~~~~~~~~~np~---g~vP~L~d~~~~l~ES~aI~~yL~~   76 (79)
T d1ljra2           3 LELFLDLVSQPSRAVYIFAKKNGI---PLELRTVDLVKGQHKSKEFLQINSL---GKLPTLKDGDFILTESSAILIYLSC   76 (79)
T ss_dssp             CEEEECTTSHHHHHHHHHHHHTTC---CCEEEECCTTTTGGGSHHHHTTCTT---CCSCEEEETTEEEECHHHHHHHHHH
T ss_pred             EEEeeCCCChHHHHHHHHHHHhCC---CCEEEeeeccccccCCHHHHHhhhh---cceeEEEeCCcEEEcHHHHHHHHHH
Confidence            688999999999987767766654   3444444  3322111223334442   3344556789999999999876643

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=92.06  E-value=0.45  Score=31.35  Aligned_cols=73  Identities=18%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      +.+|++-.||+|++..-.+..++. .-.+..+++......+ +...+++   .+.+-++..||.++..+.|++.-+..
T Consensus         1 m~LY~~~~Sp~~~~v~~~l~~~gi-~~e~~~v~~~~~~~~~-~~~~~nP---~g~VP~L~~~g~~l~eS~aI~~YL~~   73 (83)
T d1v2aa2           1 MDYYYSLISPPCQSAILLAKKLGI-TLNLKKTNVHDPVERD-ALTKLNP---QHTIPTLVDNGHVVWESYAIVLYLVE   73 (83)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTC-CCEEEECCTTCHHHHH-HHHHHCT---TCCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             CEEECCCCChHHHHHHHHHHHhCC-CceEEEEeCCCCcchH-HHHHHhh---ccCCCEEEEccceeEcHHHHHHHHHH
Confidence            468999999999997777777654 2345555655433222 1122222   22344555689999999999987654

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.09  Score=39.43  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=27.1

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCC--EEEEeCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGT--IKFVDIS  118 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~--I~fvdi~  118 (206)
                      ..+++|+|=.||+|.++-.-+.++.. .+.  +.|+++.
T Consensus        38 ~tv~vF~D~~CP~C~~~~~~l~~l~~-~~~v~v~~~~~~   75 (169)
T d1v58a1          38 VIVYVFADPFCPYCKQFWQQARPWVD-SGKVQLRTLLVG   75 (169)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHH-TTSEEEEEEECC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHh-ccceeEEEEecc
Confidence            45788999999999999988877643 344  5666664

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.86  E-value=0.13  Score=35.00  Aligned_cols=76  Identities=14%  Similarity=0.219  Sum_probs=47.3

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe-EEehHHHHHHH
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT-VVTDVEAFRRL  158 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~-v~~G~dA~~~i  158 (206)
                      ...+++||--+||.|...+..+.+.......+.+.-+..+.... ...+|+..  .=+ + ++  +|+ ++.|....-.+
T Consensus        16 ~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I~~--vPt-~-~~--ng~~~~~G~~~~~~l   89 (96)
T d1hyua4          16 DFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMG--VPA-V-FV--NGKEFGQGRMTLTEI   89 (96)
T ss_dssp             CEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCS--SSE-E-EE--TTEEEEESCCCHHHH
T ss_pred             CeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhccccc--ccE-E-EE--CCEEEEecCCCHHHH
Confidence            34678899999999999988888775334567666444433333 34566632  212 2 22  666 66776556666


Q ss_pred             HHHc
Q 028608          159 YEEV  162 (206)
Q Consensus       159 l~~l  162 (206)
                      ...+
T Consensus        90 ~~~l   93 (96)
T d1hyua4          90 VAKV   93 (96)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=91.38  E-value=0.22  Score=32.77  Aligned_cols=69  Identities=14%  Similarity=0.315  Sum_probs=47.6

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH---HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI---EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY  159 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~---l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il  159 (206)
                      .++||-=.+||+|.+..++|.+++.   .+..+++.++....   .+..|.      ..+-.+--+|+.+.|.+-+..+.
T Consensus         2 ~I~iys~~~Cp~C~~ak~~L~~~~i---~y~~~di~~~~~~~~~~~~~~g~------~tvP~i~i~~~~IGG~~el~~l~   72 (82)
T d1fova_           2 NVEIYTKETCPYCHRAKALLSSKGV---SFQELPIDGNAAKREEMIKRSGR------TTVPQIFIDAQHIGGYDDLYALD   72 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTC---CCEEEECTTCSHHHHHHHHHHSS------CCSCEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEeCCCCHhHHHHHHHHHHcCC---CeEEEeccchHHHHHHHHHHhCC------CCCCeEEECCEEEecHHHHHHHH
Confidence            4678888899999999999988764   57888887654331   222232      12334446999999998776654


Q ss_pred             H
Q 028608          160 E  160 (206)
Q Consensus       160 ~  160 (206)
                      .
T Consensus        73 ~   73 (82)
T d1fova_          73 A   73 (82)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.33  E-value=0.48  Score=31.92  Aligned_cols=76  Identities=11%  Similarity=-0.011  Sum_probs=47.0

Q ss_pred             CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC--ChhhhHHHhCCCChhcccceEEEEE--eCCeEEehHHHHH
Q 028608           81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS--SDEYSIEENQGLDYKTVMGSIHAIV--SDGTVVTDVEAFR  156 (206)
Q Consensus        81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~--s~~~~~l~~~gld~e~~~~~lhvv~--~dG~v~~G~dA~~  156 (206)
                      ...+++|.+-.||.|.+..-.|..+..   .++.+.+.  ...........+++..-.=.  +++  .||.+...+.|++
T Consensus         3 ~~~~tLY~~~~sp~~~kV~~~L~e~gi---~ye~~~v~~~~~~~~~~~~~~~np~g~vP~--L~d~~~~~~~l~ES~aI~   77 (92)
T d1k0da2           3 LEGYTLFSHRSAPNGFKVAIVLSELGF---HYNTIFLDFNLGEHRAPEFVSVNPNARVPA--LIDHGMDNLSIWESGAIL   77 (92)
T ss_dssp             SSSEEEEECTTCHHHHHHHHHHHHTTC---CEEEEECCTTTTGGGSHHHHTTCTTCCSCE--EEEGGGTTEEEESHHHHH
T ss_pred             CCceEEeeCCCCccHHHHHHHHHHcCC---CCEEEEeeccCCcccCHHHHHHhhccccce--eEEecccceEEcCHHHHH
Confidence            345899999999999998888877753   35555443  32221122333443322211  233  4789999999998


Q ss_pred             HHHHH
Q 028608          157 RLYEE  161 (206)
Q Consensus       157 ~il~~  161 (206)
                      .-+..
T Consensus        78 ~YL~~   82 (92)
T d1k0da2          78 LHLVN   82 (92)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            86654

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=91.10  E-value=0.73  Score=29.43  Aligned_cols=65  Identities=12%  Similarity=0.380  Sum_probs=43.4

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFR  156 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~  156 (206)
                      +++||==..||+|.+..++|.+++.   .+..+++..+....  .+..|.      ..+-.+.-+|+.+.|++=+.
T Consensus         6 ~I~iYs~~~C~~C~~ak~lL~~~~i---~~~~~~v~~~~~~~~~~~~~~~------~tvP~i~i~g~~IGG~~el~   72 (74)
T d1nm3a1           6 SISIFTKPGCPFCAKAKQLLHDKGL---SFEEIILGHDATIVSVRAVSGR------TTVPQVFIGGKHIGGSDDLE   72 (74)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTC---CCEEEETTTTCCHHHHHHHTCC------SSSCEEEETTEEEESHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHHcCC---CeEEEEccCcHHHHHHHHHhCC------ccCCEEEECCEEEEChHHHh
Confidence            5677777889999999999988753   46677776654332  222222      22334456999999987543

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=90.42  E-value=0.61  Score=30.96  Aligned_cols=72  Identities=13%  Similarity=0.091  Sum_probs=46.9

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh--HHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS--IEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~--~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      +++|+...|+.|++..-.+...+   -.++++.+.-..++  ..+...+++.   +.+-++..||.+...+.|++.-+..
T Consensus         2 ~iLY~~~~S~~~~~v~~~l~e~g---i~~e~~~v~~~~~~~~~~~~~~~nP~---g~vP~L~~~~~~l~ES~aI~~YL~~   75 (85)
T d1r5aa2           2 TVLYYLPASPPCRSVLLLAKMIG---VELDLKVLNIMEGEQLKPDFVELNPQ---HCIPTMDDHGLVLWESRVILSYLVS   75 (85)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTT---CCEEEEECCTTTTGGGSHHHHTTCTT---CCSSEEEETTEEEECHHHHHHHHHH
T ss_pred             EEEEcCCCCHhHHHHHHHHHHcC---CCCEEEEecCCCcccCCHHHHHHHhc---CCCCEEEEcccceecHHHHHHHHHH
Confidence            57888999999998777777654   34666655432221  1223344442   2344666799999999999887644

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.42  Score=30.88  Aligned_cols=62  Identities=11%  Similarity=0.289  Sum_probs=42.0

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EENQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      +++||-=.+||+|.+..++|.+++.   .+..+++..+... + ++..|.      +.+-++.-+|+++.|++
T Consensus         2 ki~iYs~~~C~~C~~ak~~L~~~~i---~y~~~~i~~~~~~~~~~~~~g~------~tvP~i~i~~~~i~Gf~   65 (76)
T d1h75a_           2 RITIYTRNDCVQCHATKRAMENRGF---DFEMINVDRVPEAAEALRAQGF------RQLPVVIAGDLSWSGFR   65 (76)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTC---CCEEEETTTCHHHHHHHHHTTC------CSSCEEEETTEEEESCC
T ss_pred             EEEEEeCCCCccHHHHHHHHHhcCc---eeEEEeecCCHHHHHHHHhcCC------CCCCEEEECCEEEECCC
Confidence            4566666889999999999988753   5778888775432 2 333442      22345556899999963

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=89.49  E-value=1.2  Score=28.18  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=41.6

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EENQGLDYKTVMGSIHAIVSDGTVVTDVE  153 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~~~gld~e~~~~~lhvv~~dG~v~~G~d  153 (206)
                      +++||==..||+|.+..++|.++.   -.+..+++..+... . .+..|.      +.+-++.-||+.+.|.+
T Consensus         2 ~v~iYt~~~C~~C~~ak~~L~~~~---i~~~~~~i~~~~~~~~~~~~~g~------~tvP~i~i~g~~igGf~   65 (74)
T d1r7ha_           2 SITLYTKPACVQCTATKKALDRAG---LAYNTVDISLDDEARDYVMALGY------VQAPVVEVDGEHWSGFR   65 (74)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTT---CCCEEEETTTCHHHHHHHHHTTC------BCCCEEEETTEEEESCC
T ss_pred             EEEEEeCCCChhHHHHHHHHHHcC---CceEEEEccCCHHHHHHHHHhCC------CCcCEEEECCEEEeCCC
Confidence            355666689999999999998874   46788888765432 2 233332      12334556999999863

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=89.30  E-value=0.58  Score=30.70  Aligned_cols=73  Identities=14%  Similarity=0.058  Sum_probs=47.5

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh--HHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS--IEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~--~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      .+++|+...|+.|.+..-.|..++.   .++.+.+.-..+.  ..+...+++   .+.+-++..+|..+..+.|+++-+.
T Consensus         2 p~~Ly~~~~S~~~~kv~~~L~e~gi---~~e~~~v~~~~~~~~~~~~~~~nP---~g~VP~L~~~~~~l~ES~aI~~YL~   75 (80)
T d1axda2           2 PMKLYGAVMSWNLTRCATALEEAGS---DYEIVPINFATAEHKSPEHLVRNP---FGQVPALQDGDLYLFESRAICKYAA   75 (80)
T ss_dssp             CEEEESCTTCTTHHHHHHHHHHHTC---CEEEECCCTTTTGGGSHHHHTTCT---TCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC---CCEEEEecCCccchhhHHHHHhhc---cccCCEEEECCEEEECHHHHHHHHH
Confidence            3688889999999988878877753   3565554422221  122333433   2345566678889999999988665


Q ss_pred             H
Q 028608          161 E  161 (206)
Q Consensus       161 ~  161 (206)
                      .
T Consensus        76 ~   76 (80)
T d1axda2          76 R   76 (80)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.26  E-value=0.76  Score=32.12  Aligned_cols=63  Identities=16%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--H-HhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        90 G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      -.||+|.+..+.|....   -.+..+++.......  + +..|-  ..    +-.|--+|+.+.|.+-+.++...
T Consensus        28 p~Cp~c~~ak~lL~~~~---i~~~~~~v~~~~~~~~~l~~~t~~--~T----vPqIFi~g~~IGG~ddl~~l~~~   93 (109)
T d1wika_          28 AKCGFSKQILEILNSTG---VEYETFDILEDEEVRQGLKTFSNW--PT----YPQLYVRGDLVGGLDIVKELKDN   93 (109)
T ss_dssp             CCSSTHHHHHHHHHHTC---SCEEEEESSSCHHHHHHHHHHHSC--CS----SCEEECSSSEEECHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHhcC---CCceEEEecccHHHHHHHHHhcCC--CC----CCeEEECCEEEcCHHHHHHHHHC
Confidence            45999999999998764   357777777654321  1 22221  12    22333599999999998887765

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.09  E-value=0.73  Score=31.44  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=36.9

Q ss_pred             CCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCC
Q 028608           78 SPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGL  130 (206)
Q Consensus        78 ~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gl  130 (206)
                      +...+.+++|+=.+|++|.....+|.+... .-.+.++++..+.... .+.+|+
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~-~~~~~~v~vd~~~~~~l~~~y~~   65 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKD-RFILQEVDITLPENSTWYERYKF   65 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSS-SSEEEEEETTSSTTHHHHHHSSS
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhh-hcceEEEecccccCHHHHHHhcc
Confidence            345567888889999999999999988764 3456777766555443 345664

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.30  E-value=0.59  Score=31.20  Aligned_cols=68  Identities=18%  Similarity=0.434  Sum_probs=38.1

Q ss_pred             EcC---CChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-------H-HHhCCCChhcccceEE-EEEeCCeEEehHHHH
Q 028608           88 YDG---DCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-------I-EENQGLDYKTVMGSIH-AIVSDGTVVTDVEAF  155 (206)
Q Consensus        88 YDG---~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-------~-l~~~gld~e~~~~~lh-vv~~dG~v~~G~dA~  155 (206)
                      +|+   .||+|.+..++|.+++.   .+..+++......       . .+..+....... .+- +...||+.+.|.+-+
T Consensus         7 ~~~~~~~C~~C~~AK~lL~~~~i---~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~-TvPqIfi~dg~~IGG~del   82 (87)
T d1abaa_           7 YDSNIHKCGPCDNAKRLLTVKKQ---PFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGL-TMPQVFAPDGSHIGGFDQL   82 (87)
T ss_dssp             CCTTTSCCHHHHHHHHHHHHTTC---CEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTC-CSCEEECTTSCEEESHHHH
T ss_pred             eCCCCCCChhHHHHHHHHHHcCC---CceeccccccccccCHHHHHHHHHHhcccCCCCc-eeCeEEecCCcEEECHHHH
Confidence            455   69999999999988753   4666666543211       0 111111110111 122 223579999999987


Q ss_pred             HHHH
Q 028608          156 RRLY  159 (206)
Q Consensus       156 ~~il  159 (206)
                      .+.+
T Consensus        83 ~e~~   86 (87)
T d1abaa_          83 REYF   86 (87)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            7653

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=86.56  E-value=0.77  Score=30.38  Aligned_cols=73  Identities=11%  Similarity=0.044  Sum_probs=45.5

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      +.+||...|+.|++..-.+...+.   .++.+.+.-..++.  .+...+++   ..++-++..+|.+...+.|+.+-+..
T Consensus         1 mkLY~~~~S~~~~~v~~~l~e~gi---~~e~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~d~~~~l~ES~aI~~yL~~   74 (84)
T d1jlva2           1 MDFYYLPGSAPCRAVQMTAAAVGV---ELNLKLTNLMAGEHMKPEFLKINP---QHCIPTLVDNGFALWESRAICTYLAE   74 (84)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCGGGTGGGSHHHHHHCT---TCCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             CEEEcCCCCHHHHHHHHHHHHcCC---CCEEEEecCCCCccCCHHHHHHhc---cccCCEEEECCEEEEcHHHHHHHHHH
Confidence            468999999999988777776653   35555443222111  11112222   23344556789999999999887665


Q ss_pred             c
Q 028608          162 V  162 (206)
Q Consensus       162 l  162 (206)
                      .
T Consensus        75 ~   75 (84)
T d1jlva2          75 K   75 (84)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.46  E-value=1.1  Score=29.48  Aligned_cols=72  Identities=15%  Similarity=0.145  Sum_probs=45.9

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      +.+|+...|+.|.+..-.+..++.   .++.+.+.-..+..  .+...+++   ...+-++..+|.++..+.|+++-+..
T Consensus         2 ~kLY~~~~s~~~~~v~~~l~e~gl---~~e~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~~~~~~l~ES~aI~~YL~~   75 (84)
T d1gnwa2           2 IKVFGHPASIATRRVLIALHEKNL---DFELVHVELKDGEHKKEPFLSRNP---FGQVPAFEDGDLKLFESRAITQYIAH   75 (84)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCGGGTGGGSTTGGGTCT---TCCSCEEEETTEEEECHHHHHHHHHH
T ss_pred             eEEEeCCCChHHHHHHHHHHHcCC---CcEeecccCCcccccHHHHHHHhh---cCcceEEEECCcEEecHHHHHHHHHH
Confidence            678999999999988888877654   34444443222111  11222232   23455666789999999999987655

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.03  E-value=1.2  Score=29.28  Aligned_cols=76  Identities=16%  Similarity=0.070  Sum_probs=44.9

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE  160 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~  160 (206)
                      |+++|....|+.|.+..-+|..++.. -....+++....+..  .+...+++   ...+-++..||.++..+.|++.-+.
T Consensus         1 kpiLY~~~~S~~s~rvr~~L~ekgi~-~e~~~v~l~~~~~~~~~~~~~~~nP---~g~vP~L~~~g~~i~eS~aI~~yL~   76 (83)
T d1fw1a2           1 KPILYSYFRSSCSWRVRIALALKGID-YKTVPINLIKDGGQQFSKDFQALNP---MKQVPTLKIDGITIHQSLAIIEYLE   76 (83)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHTTCC-CEEEECCSSTTSCGGGSHHHHHHCT---TCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CCEEEcCCCChHHHHHHHHHHHhCCC-CEEEeccccccccccCCHHHHHhcc---CCccCEEEECCEEEecHHHHHHHHH
Confidence            35677688999999887777766531 123333443321110  11112222   2335555669999999999998776


Q ss_pred             Hc
Q 028608          161 EV  162 (206)
Q Consensus       161 ~l  162 (206)
                      ..
T Consensus        77 ~~   78 (83)
T d1fw1a2          77 ET   78 (83)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=85.98  E-value=3.2  Score=27.19  Aligned_cols=72  Identities=14%  Similarity=0.110  Sum_probs=41.9

Q ss_pred             EEEEc-CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608           85 KMLYD-GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV  162 (206)
Q Consensus        85 ~VlYD-G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l  162 (206)
                      +++|+ ..||+|.+..-.|..++.   .++.+.+.-..... ....+++  +.+.+-++..||.++..+.|+++-+...
T Consensus         6 l~Ly~~~~Sp~~~rvr~~L~~kgi---~~e~~~v~~~~~~~-~~~~~nP--~~g~vP~L~~~g~~l~eS~~I~~YL~e~   78 (84)
T d1oyja2           6 LVLLDFWVSPFGQRCRIAMAEKGL---EFEYREEDLGNKSD-LLLRSNP--VHRKIPVLLHAGRPVSESLVILQYLDDA   78 (84)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTC---CCEEEECCTTSCCH-HHHHHST--TTCCSCEEEETTEEEESHHHHHHHHHHH
T ss_pred             eEEEcCCCChHHHHHHHHHHHcCC---CcEEEEEccCcCCH-HHHhhCC--CcCcccEEEECCceEEcHHHHHHHHHHH
Confidence            55555 579999997777766643   34444443211111 1111122  1123445567999999999999877654

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=85.43  E-value=1.2  Score=29.07  Aligned_cols=72  Identities=19%  Similarity=0.250  Sum_probs=44.5

Q ss_pred             eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608           84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~  161 (206)
                      +++|+...||.|.+..-.+..++.   .++.+.+.-..++.  .....+++   ...+-++..+|.++..+.|+++-+..
T Consensus         3 m~Ly~~~~sp~~~~v~~~l~e~gi---~~e~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~~~~~~l~eS~aI~~YL~~   76 (81)
T d1aw9a2           3 LKLYGMPLSPNVVRVATVLNEKGL---DFEIVPVDLTTGAHKQPDFLALNP---FGQIPALVDGDEVLFESRAINRYIAS   76 (81)
T ss_dssp             EEEESCTTCHHHHHHHHHHHHTTC---CEEEECCCSSTTSSCCCSGGGTCT---TCCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHhcCC---CCEEEEecCCCcchhhHHHHHHhh---cCeeEEEEECCcEEECHHHHHHHHHH
Confidence            677888889999998777777643   35555443221110  01112222   23355566789999999999886654

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=85.03  E-value=1.4  Score=30.43  Aligned_cols=73  Identities=10%  Similarity=0.133  Sum_probs=45.1

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEE-eCCeEEehHHHHHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRRLYEE  161 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~il~~  161 (206)
                      ++++|--..||+|.+....|..+..   .+..+++.......+   .+.+..-.=.+...+ .+|++..+|.+++.-+..
T Consensus         2 ~i~LY~~~~sP~~~kvr~~L~~k~l---~~~~~~v~~~~~~~~---~~~~~~~vP~l~~~~~~~g~~i~eS~~Ii~YL~~   75 (113)
T d1z9ha2           2 QLTLYQYKTCPFCSKVRAFLDFHAL---PYQVVEVNPVLRAEI---KFSSYRKVPILVAQEGESSQQLNDSSVIISALKT   75 (113)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHTTC---CEEEEECCTTTCGGG---TTCSCCSSCEEEEEETTEEEEECSHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHHHcCC---eeEEeccCcccchhh---ccCccccccccccccCCCceEeecHHHHHHHHHH
Confidence            5788889999999999999987653   466666554332211   222222111121111 236899999999987765

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=83.69  E-value=0.81  Score=31.00  Aligned_cols=41  Identities=15%  Similarity=0.150  Sum_probs=30.1

Q ss_pred             CCCCCCCcCCCCCCC-CC--CceEEEEcCCChhhHHHHHHHHhh
Q 028608           65 DPLTSKKEYDKDPSP-EN--WKIKMLYDGDCPLCMREVNMLKER  105 (206)
Q Consensus        65 ~p~~~~~~~~~~~~~-~~--~~l~VlYDG~CplC~~~v~~L~r~  105 (206)
                      ||+.......|+... ++  .-++.||-.+|+.|......+.+.
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~l   45 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEEL   45 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHH
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHH
Confidence            566677776665532 33  347999999999999988877765

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=82.60  E-value=0.84  Score=34.44  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=27.4

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCC
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISS  119 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s  119 (206)
                      -++.|+=.+||.|..++..|.++... .+.+.|+-+.+
T Consensus        35 vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~s   72 (187)
T d2cvba1          35 LAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINA   72 (187)
T ss_dssp             EEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEEC
T ss_pred             EEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeec
Confidence            46778999999999998888776321 35678877653

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.16  E-value=0.9  Score=31.12  Aligned_cols=58  Identities=9%  Similarity=0.221  Sum_probs=36.1

Q ss_pred             EEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608           87 LYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV  148 (206)
Q Consensus        87 lYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v  148 (206)
                      ||-.+|+-|......+.+.......+.|+.+.-+.... ...+|+.-  .= .+.+ ..+|+.
T Consensus        28 F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v~~--~P-t~~~-~~~G~~   86 (107)
T d1gh2a_          28 FTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISA--TP-TFQF-FRNKVR   86 (107)
T ss_dssp             EECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCS--SS-EEEE-EETTEE
T ss_pred             EECCCCCCccccchhhhccccccccccccccccccchhhhhhcCcee--ce-EEEE-EECCEE
Confidence            89999999999999887775434556675544433332 34566632  21 2323 368874

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=82.13  E-value=0.69  Score=33.28  Aligned_cols=41  Identities=10%  Similarity=0.193  Sum_probs=26.9

Q ss_pred             CCCCCCceEEEEcCCChhhHHHHHHHHhh---cccCCCEEEEeC
Q 028608           77 PSPENWKIKMLYDGDCPLCMREVNMLKER---NKQYGTIKFVDI  117 (206)
Q Consensus        77 ~~~~~~~l~VlYDG~CplC~~~v~~L~r~---d~~~~~I~fvdi  117 (206)
                      |......++.|+|=.||.|..+-..+.++   ......+.+..+
T Consensus        15 p~~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   58 (181)
T d1beda_          15 PASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   58 (181)
T ss_dssp             CCCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEec
Confidence            33345578999999999999886666443   222345555544

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.10  E-value=0.35  Score=33.92  Aligned_cols=38  Identities=16%  Similarity=0.349  Sum_probs=26.9

Q ss_pred             CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCC
Q 028608           82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS  119 (206)
Q Consensus        82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s  119 (206)
                      .-++.|+=.+||.|..++..+.+.......+.++.+.+
T Consensus        27 ~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~   64 (134)
T d1zzoa1          27 PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAG   64 (134)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             EEEEEecccccCcccccchhhHHHHhhhcccccccccc
Confidence            34677889999999999998887754344455554443

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=81.84  E-value=0.94  Score=33.25  Aligned_cols=37  Identities=16%  Similarity=0.289  Sum_probs=25.3

Q ss_pred             eEEEE-cCCChhhHHHHHHHHhhcccCCCEEEEeCCCh
Q 028608           84 IKMLY-DGDCPLCMREVNMLKERNKQYGTIKFVDISSD  120 (206)
Q Consensus        84 l~VlY-DG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~  120 (206)
                      ++++| =.+||.|..++..+++.....+.+.++.++.+
T Consensus        48 vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d   85 (164)
T d1qxha_          48 VLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISAD   85 (164)
T ss_dssp             EEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEESS
T ss_pred             EEEEecchhcccchHHHHHHHHHHHhhccceeeeEEcC
Confidence            33345 44899999999998776433556777766544

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=80.78  E-value=0.4  Score=31.72  Aligned_cols=74  Identities=12%  Similarity=0.261  Sum_probs=43.7

Q ss_pred             ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh----hHH-HhCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608           83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY----SIE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR  157 (206)
Q Consensus        83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~----~~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~  157 (206)
                      +++||==..||+|.+..++|.++......+.+..+.-...    ..+ +..+-....    +-.+--||+.+.|.+-+..
T Consensus         2 kvviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~t----vPqIfi~g~~IGG~~el~~   77 (85)
T d1egoa_           2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVET----VPQIFVDQQHIGGYTDFAA   77 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCC----SCEEEETTEEEESSHHHHH
T ss_pred             EEEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCC----CCEEEECCEEEECHHHHHH
Confidence            4556666789999999999988743234566665432111    111 112211112    2233459999999998877


Q ss_pred             HHH
Q 028608          158 LYE  160 (206)
Q Consensus       158 il~  160 (206)
                      +++
T Consensus        78 ~~~   80 (85)
T d1egoa_          78 WVK   80 (85)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765