Citrus Sinensis ID: 028621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MFQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
Secondary Structure (PSIPRED)
ccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHccccEEEEEcccccHHHHHHcccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHccHEEEEEccccccEcccccccccccEHccEcHHHHHHcccccccHHHHHHHHHccccEEEEEccccccHHHHEcccccEEEEccccccEEEcccc
Coil and Loop (DISEMBL)
MFQVAIVVGggnifrgasaagnsgldrssaDYIGMLATVMNAIFLQAtmesigiptRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFaagtgnpffttDTAAALRCAEINAEVVLKAtnvdgvyddnprrnpnarllDTLTYQevtskdlsvMDMTAITlcqennipvvvfnlnqpgniakaiqgervgtliggtwnstvsktlg
Flexible Loop (DISEMBL)
MFQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIfaagtgnpfFTTDTAAALRCAEINAEVVlkatnvdgvyddnprrnpnarlldtlTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAiqgervgtliggtwnstvsktlg
Low Complexity Region (SEG)
MFQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
Disordered region (IsUnstruct)
**QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN****PNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN********
Disordered Region (DISOPRED)
MFQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG************
Disordered Region (DISEMBL)
MFQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
Disordered Region (DISPRO)
MFQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q10Y48	244	Uridylate kinase OS=Trich	yes	no	0.970	0.819	0.651	3e-76
Q2JS42	254	Uridylate kinase OS=Synec	yes	no	0.941	0.763	0.675	4e-75
P74457	260	Uridylate kinase OS=Synec	N/A	no	0.927	0.734	0.692	8e-75
Q2JJE2	253	Uridylate kinase OS=Synec	yes	no	0.932	0.758	0.677	3e-74
Q3MFI4	242	Uridylate kinase OS=Anaba	yes	no	0.946	0.805	0.663	2e-73
Q8YXK5	242	Uridylate kinase OS=Nosto	yes	no	0.946	0.805	0.663	2e-73
Q3AV98	237	Uridylate kinase OS=Synec	yes	no	0.927	0.805	0.677	4e-73
Q7V6C2	237	Uridylate kinase OS=Proch	yes	no	0.922	0.801	0.670	1e-72
Q5N3B6	240	Uridylate kinase OS=Synec	yes	no	0.951	0.816	0.659	2e-72
Q31QY1	240	Uridylate kinase OS=Synec	yes	no	0.951	0.816	0.659	2e-72

>sp|Q10Y48|PYRH_TRIEI Uridylate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pyrH PE=3 SV=1

 Score =  284 bits (726), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 162/201 (80%), Gaps = 1/201 (0%)

Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
            Q+AIVVGGGNIFRG  AA + G+DR++ADY+GM+ATVMNAI LQ  +E +G+PTRVQTA
Sbjct: 45  IQIAIVVGGGNIFRGVKAA-SKGMDRATADYVGMIATVMNAITLQDALEQVGVPTRVQTA 103

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
             M E+AEPYIRRRA+RHLEKGRVV+F AG+GNPFFTTDT AALR AEI AEV+ KAT V
Sbjct: 104 IAMQELAEPYIRRRAIRHLEKGRVVVFGAGSGNPFFTTDTTAALRAAEIEAEVIFKATKV 163

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGVYD +P +N  A+  ++L+Y EV + DL VMD TAI LC+ENNIP++VFNL+  GNI 
Sbjct: 164 DGVYDSDPHKNQEAKRYESLSYGEVLTLDLRVMDSTAIALCKENNIPIIVFNLSVSGNIC 223

Query: 182 KAIQGERVGTLIGGTWNSTVS 202
           KA+ GE++GT++GG   S  S
Sbjct: 224 KAVMGEKIGTIVGGFHESKRS 244

Catalyzes the reversible phosphorylation of UMP to UDP.
Trichodesmium erythraeum (strain IMS101) (taxid: 203124)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 2EC: 2

>sp|Q2JS42|PYRH_SYNJA Uridylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pyrH PE=3 SV=1

 Score =  280 bits (716), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 131/194 (67%), Positives = 157/194 (80%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           QVAIVVGGGNI+RG   A   G+D++SADY+GMLATV+NA+ LQ  +E  GIPTRVQTA 
Sbjct: 44  QVAIVVGGGNIWRGRKEAAAQGMDQASADYVGMLATVINALTLQDAIERAGIPTRVQTAI 103

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M EVAEPYIRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR AEI+AEV+ KAT VD
Sbjct: 104 AMQEVAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVD 163

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P+ +P AR  D L+YQ+V ++DL VMD TAI LC+EN +P+VVF+L  PGNI +
Sbjct: 164 GVYDADPKTHPQARRYDVLSYQDVLTRDLRVMDSTAIALCKENQLPIVVFDLTTPGNIYR 223

Query: 183 AIQGERVGTLIGGT 196
            +QGE +GT IG T
Sbjct: 224 VVQGEPIGTWIGQT 237

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|P74457|PYRH_SYNY3 Uridylate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=pyrH PE=3 SV=1

 Score =  279 bits (714), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 133/192 (69%), Positives = 159/192 (82%), Gaps = 1/192 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           Q+AIVVGGGNIFRG  A+  +G+DR++ADYIGM+ATVMNA+ LQ  +E + IPTRV TA 
Sbjct: 64  QLAIVVGGGNIFRGVKASA-AGMDRATADYIGMIATVMNAMTLQDALEQMDIPTRVLTAI 122

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M EVAEPYIRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR AEI+AEVV KAT VD
Sbjct: 123 AMQEVAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVVFKATKVD 182

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P+ NPNAR   TLTY  V ++DL VMD TAI LC++NNIP+++F+L  PGNI +
Sbjct: 183 GVYDSDPKTNPNARRFTTLTYSHVLAEDLKVMDSTAIALCKDNNIPIMIFDLGVPGNIVR 242

Query: 183 AIQGERVGTLIG 194
           AI+GE VGTL+G
Sbjct: 243 AIKGEAVGTLVG 254

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q2JJE2|PYRH_SYNJB Uridylate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=pyrH PE=3 SV=1

 Score =  278 bits (710), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 156/192 (81%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           QVAIVVGGGNI+RG   A   G+D++SADY+GMLATV+NA+ LQ  +E  GIPTRVQTA 
Sbjct: 44  QVAIVVGGGNIWRGRKEAAAQGMDQASADYVGMLATVINALTLQDAIERAGIPTRVQTAI 103

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M EVAEPYIRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR AEI+AEV+ KAT VD
Sbjct: 104 AMQEVAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVD 163

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P+ +P AR  D L+YQ+V ++DL VMD TAI LC+EN +P+VVF+L  PGNI +
Sbjct: 164 GVYDADPKTHPQARRYDVLSYQDVLNRDLRVMDSTAIALCKENQLPIVVFDLTTPGNIYR 223

Query: 183 AIQGERVGTLIG 194
            +QGE +GT IG
Sbjct: 224 VVQGEPIGTWIG 235

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q3MFI4|PYRH_ANAVT Uridylate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pyrH PE=3 SV=1

 Score =  275 bits (703), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/196 (66%), Positives = 161/196 (82%), Gaps = 1/196 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           Q+AIVVGGGNIFRG  AA ++G+DR++ADYIGM+ATVMNA+ LQ ++E IG+ TRVQTA 
Sbjct: 46  QIAIVVGGGNIFRGVKAA-SAGMDRATADYIGMIATVMNAMTLQDSLERIGVQTRVQTAI 104

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M E+AEPYIRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR AEI+AEV+ KAT VD
Sbjct: 105 AMQELAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVD 164

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P   PNA+  ++LTY  V ++DL VMD TAI LC+ENNIP++VF+L   GNI +
Sbjct: 165 GVYDADPEVYPNAKRYNSLTYAHVLAQDLRVMDSTAIALCKENNIPILVFDLTTRGNIRR 224

Query: 183 AIQGERVGTLIGGTWN 198
           A+ GE +GTL+GG+  
Sbjct: 225 AVLGESIGTLVGGSCE 240

Catalyzes the reversible phosphorylation of UMP to UDP.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q8YXK5|PYRH_NOSS1 Uridylate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=pyrH PE=3 SV=1

 Score =  275 bits (702), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/196 (66%), Positives = 161/196 (82%), Gaps = 1/196 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           Q+AIVVGGGNIFRG  AA ++G+DR++ADYIGM+ATVMNA+ LQ ++E IG+ TRVQTA 
Sbjct: 46  QIAIVVGGGNIFRGVKAA-SAGMDRATADYIGMIATVMNAMTLQDSLERIGVQTRVQTAI 104

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M E+AEPYIRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR AEI+AEV+ KAT VD
Sbjct: 105 AMQELAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVD 164

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P   PNA+  ++LTY  V ++DL VMD TAI LC+ENNIP++VF+L   GNI +
Sbjct: 165 GVYDADPEIYPNAKRYNSLTYAHVLAQDLRVMDSTAIALCKENNIPILVFDLTTRGNIRR 224

Query: 183 AIQGERVGTLIGGTWN 198
           A+ GE +GTL+GG+  
Sbjct: 225 AVLGESIGTLVGGSCE 240

Catalyzes the reversible phosphorylation of UMP to UDP.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q3AV98|PYRH_SYNS9 Uridylate kinase OS=Synechococcus sp. (strain CC9902) GN=pyrH PE=3 SV=1

 Score =  273 bits (699), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 158/192 (82%), Gaps = 1/192 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           Q+AIVVGGGNIFRG   +  +G+DR++ADY+GMLATVMNAI LQ  +E  G+PTRVQTA 
Sbjct: 44  QLAIVVGGGNIFRGLKGSA-AGMDRATADYVGMLATVMNAITLQDGLERAGVPTRVQTAI 102

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M EVAEPYIRR+A+RHLEKGRVV+F AG GNPFFTTDT AALR AEINA+VV KAT VD
Sbjct: 103 AMQEVAEPYIRRKAMRHLEKGRVVVFGAGCGNPFFTTDTTAALRAAEINADVVFKATKVD 162

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P ++P+A   D L+YQ+V S +L VMD TAI+LC+ENNIP+VVF+L +PGNI K
Sbjct: 163 GVYDKDPAKHPDAVKHDHLSYQDVLSGELGVMDATAISLCKENNIPIVVFDLFEPGNIGK 222

Query: 183 AIQGERVGTLIG 194
           A+ GE +G+ IG
Sbjct: 223 AVAGEPIGSRIG 234

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechococcus sp. (strain CC9902) (taxid: 316279)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q7V6C2|PYRH_PROMM Uridylate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=pyrH PE=3 SV=1

 Score =  272 bits (695), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 128/191 (67%), Positives = 157/191 (82%), Gaps = 1/191 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           Q+AIVVGGGNIFRG   +  +G+DR++ADY+GMLATVMNAI LQ  +E  G+PTRVQTA 
Sbjct: 44  QLAIVVGGGNIFRGLKGSA-AGMDRATADYVGMLATVMNAITLQDGLERAGVPTRVQTAI 102

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M EVAEPYIRRRA+RHLEKGRVV+F  G GNPFFTTDT A+LR AEINA+VV KAT VD
Sbjct: 103 EMQEVAEPYIRRRAIRHLEKGRVVVFGGGCGNPFFTTDTTASLRAAEINADVVFKATKVD 162

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P+R P+A   D+LT+Q+V S +L+VMD TAI LC++NNIP+VVF+L +PGNI K
Sbjct: 163 GVYDRDPKRFPDATRYDSLTFQQVLSGELAVMDSTAIALCKDNNIPIVVFDLFEPGNIGK 222

Query: 183 AIQGERVGTLI 193
           A+ GE +G+ I
Sbjct: 223 AVAGEAIGSRI 233

Catalyzes the reversible phosphorylation of UMP to UDP.

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q5N3B6|PYRH_SYNP6 Uridylate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pyrH PE=3 SV=2

 Score =  271 bits (694), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 157/197 (79%), Gaps = 1/197 (0%)

Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           FQVAIVVGGGNIFRG   A  +G++R++ADY+GM+ATVMNAI LQ  +E + +PTRVQTA
Sbjct: 43  FQVAIVVGGGNIFRGIKGAA-AGMERATADYVGMIATVMNAITLQDALEQLQVPTRVQTA 101

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
             M EVAEPYIRRRA+RHLEKGRVVIF +GTGNPFFTTDT AALR AEINA+VV KAT V
Sbjct: 102 IAMQEVAEPYIRRRAIRHLEKGRVVIFGSGTGNPFFTTDTTAALRAAEINADVVFKATKV 161

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGVYD +P+ NP AR   TL Y  V + +L VMD TAI LC++N+IP+VVF+L   GNI 
Sbjct: 162 DGVYDSDPKLNPQARRFTTLNYNYVLNHELGVMDSTAIALCKDNSIPIVVFDLFGEGNIR 221

Query: 182 KAIQGERVGTLIGGTWN 198
           +A+QGE +GT +GG+  
Sbjct: 222 RAVQGEDIGTTVGGSCE 238

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q31QY1|PYRH_SYNE7 Uridylate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=pyrH PE=3 SV=2

 Score =  271 bits (694), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 157/197 (79%), Gaps = 1/197 (0%)

Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           FQVAIVVGGGNIFRG   A  +G++R++ADY+GM+ATVMNAI LQ  +E + +PTRVQTA
Sbjct: 43  FQVAIVVGGGNIFRGIKGAA-AGMERATADYVGMIATVMNAITLQDALEQLQVPTRVQTA 101

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
             M EVAEPYIRRRA+RHLEKGRVVIF +GTGNPFFTTDT AALR AEINA+VV KAT V
Sbjct: 102 IAMQEVAEPYIRRRAIRHLEKGRVVIFGSGTGNPFFTTDTTAALRAAEINADVVFKATKV 161

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGVYD +P+ NP AR   TL Y  V + +L VMD TAI LC++N+IP+VVF+L   GNI 
Sbjct: 162 DGVYDSDPKLNPQARRFTTLNYNYVLNHELGVMDSTAIALCKDNSIPIVVFDLFGEGNIR 221

Query: 182 KAIQGERVGTLIGGTWN 198
           +A+QGE +GT +GG+  
Sbjct: 222 RAVQGEDIGTTVGGSCE 238

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
449461831	341	PREDICTED: uridylate kinase-like [Cucumi	0.985	0.595	0.916	1e-105
356512819	331	PREDICTED: uridylate kinase-like [Glycin	0.980	0.610	0.915	1e-105
15230160	339	uridylate kinase [Arabidopsis thaliana]	0.980	0.595	0.920	1e-105
297830522	334	aspartate/glutamate/uridylate kinase fam	0.980	0.604	0.920	1e-105
356525588	325	PREDICTED: uridylate kinase-like [Glycin	0.975	0.618	0.910	1e-105
255552374	328	Uridylate kinase, putative [Ricinus comm	0.980	0.615	0.920	1e-104
217074196	324	unknown [Medicago truncatula]	0.970	0.617	0.915	1e-104
224131186	250	predicted protein [Populus trichocarpa]	0.985	0.812	0.916	1e-104
255637835	325	unknown [Glycine max]	0.975	0.618	0.890	1e-102
357519905	321	Uridylate kinase [Medicago truncatula] g	0.941	0.604	0.917	1e-101

>gi|449461831|ref|XP_004148645.1| PREDICTED: uridylate kinase-like [Cucumis sativus] gi|449507502|ref|XP_004163050.1| PREDICTED: uridylate kinase-like [Cucumis sativus]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/203 (91%), Positives = 196/203 (96%)

Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
            +VAIVVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA
Sbjct: 139 IEVAIVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 198

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
           FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEV+LKATNV
Sbjct: 199 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVLLKATNV 258

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGVYDD+PR+NPNARLL+TLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL +P NI 
Sbjct: 259 DGVYDDDPRQNPNARLLETLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLTKPDNIT 318

Query: 182 KAIQGERVGTLIGGTWNSTVSKT 204
           KAI+GERVGTLIGGTWNS V+ T
Sbjct: 319 KAIKGERVGTLIGGTWNSMVAST 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512819|ref|XP_003525113.1| PREDICTED: uridylate kinase-like [Glycine max]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/202 (91%), Positives = 197/202 (97%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +VA+VVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF
Sbjct: 130 EVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 189

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
           RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD
Sbjct: 190 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 249

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GV+D++P+RNP ARL +TLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLN+PGNI K
Sbjct: 250 GVFDEDPKRNPQARLHETLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNKPGNIEK 309

Query: 183 AIQGERVGTLIGGTWNSTVSKT 204
           AI+GERVGTLIG TWNSTVS+T
Sbjct: 310 AIKGERVGTLIGATWNSTVSRT 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230160|ref|NP_188498.1| uridylate kinase [Arabidopsis thaliana] gi|9293891|dbj|BAB01794.1| unnamed protein product [Arabidopsis thaliana] gi|15292789|gb|AAK92763.1| putative uridylate kinase [Arabidopsis thaliana] gi|20258857|gb|AAM14100.1| putative uridylate kinase [Arabidopsis thaliana] gi|332642610|gb|AEE76131.1| uridylate kinase [Arabidopsis thaliana]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/202 (92%), Positives = 198/202 (98%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +VAIVVGGGNIFRG++ AG SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF
Sbjct: 137 EVAIVVGGGNIFRGSTWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 196

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
           RMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD
Sbjct: 197 RMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 256

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GV+DD+P+RNPNARLLD+LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL++PGNIAK
Sbjct: 257 GVFDDDPKRNPNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLSEPGNIAK 316

Query: 183 AIQGERVGTLIGGTWNSTVSKT 204
           AI+GERVGTLIGGTWNS V+ T
Sbjct: 317 AIKGERVGTLIGGTWNSIVTTT 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830522|ref|XP_002883143.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297830524|ref|XP_002883144.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328983|gb|EFH59402.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328984|gb|EFH59403.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/202 (92%), Positives = 198/202 (98%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +VAIVVGGGNIFRG++ AG SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF
Sbjct: 132 EVAIVVGGGNIFRGSTWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 191

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
           RMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD
Sbjct: 192 RMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 251

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GV+DD+P+RNPNARLLD+LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL++PGNIAK
Sbjct: 252 GVFDDDPKRNPNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLSEPGNIAK 311

Query: 183 AIQGERVGTLIGGTWNSTVSKT 204
           AI+GERVGTLIGGTWNS V+ T
Sbjct: 312 AIKGERVGTLIGGTWNSIVTTT 333

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525588|ref|XP_003531406.1| PREDICTED: uridylate kinase-like [Glycine max]

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/201 (91%), Positives = 196/201 (97%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +VA+VVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF
Sbjct: 124 EVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 183

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
           RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD
Sbjct: 184 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 243

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GV+D++P+RNP ARL +TLTYQEVTSKDLSVMDMTAITLCQENNIPV+VFNLN+PGNI K
Sbjct: 244 GVFDEDPKRNPQARLHETLTYQEVTSKDLSVMDMTAITLCQENNIPVIVFNLNKPGNIEK 303

Query: 183 AIQGERVGTLIGGTWNSTVSK 203
           AI+GERVGTLIG TWNSTVS+
Sbjct: 304 AIKGERVGTLIGATWNSTVSR 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552374|ref|XP_002517231.1| Uridylate kinase, putative [Ricinus communis] gi|223543602|gb|EEF45131.1| Uridylate kinase, putative [Ricinus communis]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/202 (92%), Positives = 197/202 (97%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +VAIVVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF
Sbjct: 127 EVAIVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 186

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
           RMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD
Sbjct: 187 RMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 246

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYDD+PR NPNARLLDTLT+ EVTSKDLSVMDMTAITLCQENNIPVVVFNL++PGNI+K
Sbjct: 247 GVYDDDPRHNPNARLLDTLTFHEVTSKDLSVMDMTAITLCQENNIPVVVFNLSEPGNISK 306

Query: 183 AIQGERVGTLIGGTWNSTVSKT 204
           AI GERVGTLIGGT NSTV++T
Sbjct: 307 AILGERVGTLIGGTRNSTVART 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074196|gb|ACJ85458.1| unknown [Medicago truncatula]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/200 (91%), Positives = 194/200 (97%)

Query: 5   AIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 64
           A+VVGGGNIFRGAS AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM
Sbjct: 125 ALVVGGGNIFRGASWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 184

Query: 65  SEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGV 124
           SEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGV
Sbjct: 185 SEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGV 244

Query: 125 YDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 184
           +DD+P+RNP ARLLDTLTYQ+V  KDLSVMD+TAITLCQENNIPVVVFNLN+PGNI KAI
Sbjct: 245 FDDDPKRNPQARLLDTLTYQDVIKKDLSVMDLTAITLCQENNIPVVVFNLNKPGNIEKAI 304

Query: 185 QGERVGTLIGGTWNSTVSKT 204
           +GERVGTLIG TWNST+S+T
Sbjct: 305 KGERVGTLIGATWNSTISRT 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131186|ref|XP_002328476.1| predicted protein [Populus trichocarpa] gi|222838191|gb|EEE76556.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/203 (91%), Positives = 197/203 (97%)

Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
            +VAIVVGGGNIFRG+S AG SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA
Sbjct: 48  IEVAIVVGGGNIFRGSSWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 107

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
           FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINA+VVLKATNV
Sbjct: 108 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAQVVLKATNV 167

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGVYDD+P+RNPNARLL+ LTY EVTSKDLSVMDMTAITLCQENNIPVVVFNL++PGNIA
Sbjct: 168 DGVYDDDPKRNPNARLLEDLTYHEVTSKDLSVMDMTAITLCQENNIPVVVFNLSKPGNIA 227

Query: 182 KAIQGERVGTLIGGTWNSTVSKT 204
           KAI+GERVGTLIGGT NSTV++T
Sbjct: 228 KAIKGERVGTLIGGTCNSTVART 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637835|gb|ACU19237.1| unknown [Glycine max]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/201 (89%), Positives = 192/201 (95%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +VA+VVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATMESIG PTRVQTAF
Sbjct: 124 EVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGTPTRVQTAF 183

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
           RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD
Sbjct: 184 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 243

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GV+D++P+RNP AR  +TLTYQEVTSKDLSVMDMTAITLCQENNIPV+VFN N+PGNI K
Sbjct: 244 GVFDEDPKRNPQARFHETLTYQEVTSKDLSVMDMTAITLCQENNIPVIVFNFNKPGNIEK 303

Query: 183 AIQGERVGTLIGGTWNSTVSK 203
           AI+GERVGTLIG TWN TVS+
Sbjct: 304 AIKGERVGTLIGATWNFTVSR 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519905|ref|XP_003630241.1| Uridylate kinase [Medicago truncatula] gi|355524263|gb|AET04717.1| Uridylate kinase [Medicago truncatula]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/194 (91%), Positives = 188/194 (96%)

Query: 11  GNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP 70
           GNIFRGAS AG+SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP
Sbjct: 128 GNIFRGASWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP 187

Query: 71  YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 130
           YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGV+DD+P+
Sbjct: 188 YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVFDDDPK 247

Query: 131 RNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVG 190
           RNP ARLLDTLTYQ+V  KDLSVMD+TAITLCQENNIPVVVFNLN+PGNI KAI+GERVG
Sbjct: 248 RNPQARLLDTLTYQDVIKKDLSVMDLTAITLCQENNIPVVVFNLNKPGNIEKAIKGERVG 307

Query: 191 TLIGGTWNSTVSKT 204
           TLIG TWNST+S+T
Sbjct: 308 TLIGATWNSTISRT 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2093949	339	AT3G18680 [Arabidopsis thalian	0.980	0.595	0.920	2.6e-95
TIGR_CMR|CHY_1785	242	CHY_1785 "uridylate kinase" [C	0.932	0.793	0.642	1.8e-64
TIGR_CMR|GSU_1919	239	GSU_1919 "uridylate kinase" [G	0.932	0.803	0.590	2.4e-60
TIGR_CMR|BA_3963	240	BA_3963 "uridylate kinase" [Ba	0.932	0.8	0.592	1.7e-57
TIGR_CMR|DET_0375	241	DET_0375 "uridylate kinase" [D	0.922	0.788	0.588	7.8e-55
UNIPROTKB|P65929	261	pyrH "Uridylate kinase" [Mycob	0.922	0.727	0.560	3e-53
TIGR_CMR|ECH_0266	244	ECH_0266 "uridylate kinase" [E	0.927	0.782	0.534	1.3e-52
TIGR_CMR|CBU_1384	243	CBU_1384 "uridylate kinase" [C	0.922	0.781	0.534	5.6e-52
TIGR_CMR|SPO_1662	251	SPO_1662 "uridylate kinase" [R	0.932	0.764	0.546	4e-51
TIGR_CMR|CJE_1410	239	CJE_1410 "uridylate kinase" [C	0.898	0.774	0.551	1.3e-50

TAIR|locus:2093949 AT3G18680 [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
 Identities = 186/202 (92%), Positives = 198/202 (98%)

Query:     3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
             +VAIVVGGGNIFRG++ AG SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF
Sbjct:   137 EVAIVVGGGNIFRGSTWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 196

Query:    63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
             RMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD
Sbjct:   197 RMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 256

Query:   123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
             GV+DD+P+RNPNARLLD+LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL++PGNIAK
Sbjct:   257 GVFDDDPKRNPNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLSEPGNIAK 316

Query:   183 AIQGERVGTLIGGTWNSTVSKT 204
             AI+GERVGTLIGGTWNS V+ T
Sbjct:   317 AIKGERVGTLIGGTWNSIVTTT 338

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA;ISS

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0033862 "UMP kinase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TIGR_CMR|CHY_1785 CHY_1785 "uridylate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 124/193 (64%), Positives = 155/193 (80%)

Query:     3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
             QVA+VVGGGNI+RG S +   G+DR++ADY+GMLATV+N++ LQ  +E +GI TRVQTA 
Sbjct:    48 QVAVVVGGGNIWRGLSGSAK-GMDRATADYMGMLATVINSLALQDALEKLGIDTRVQTAI 106

Query:    63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
              M ++AEPYIRRRA+RHLEKGRVVIFAAGTGNP+F+TDT AALR AEI AEV+L A  VD
Sbjct:   107 EMRQIAEPYIRRRAIRHLEKGRVVIFAAGTGNPYFSTDTTAALRAAEIEAEVILMAKRVD 166

Query:   123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
             GVYD +P +NPNA+  D L Y EV ++ L VMD TA +LC +NNIP++VFNL  PGNI +
Sbjct:   167 GVYDSDPLKNPNAQKFDELEYIEVLNRGLGVMDSTATSLCMDNNIPLIVFNLEVPGNIKR 226

Query:   183 AIQGERVGTLIGG 195
              I GE +GT++GG
Sbjct:   227 VILGENIGTIVGG 239

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|GSU_1919 GSU_1919 "uridylate kinase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 114/193 (59%), Positives = 151/193 (78%)

Query:     3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
             Q+A+V+GGGNIFRG  AA + G+DR+SADY+GMLAT++N++ +Q  +E +G+ TRVQ+A 
Sbjct:    47 QLALVIGGGNIFRGL-AASSKGMDRASADYMGMLATMINSLAMQDALEKVGVDTRVQSAI 105

Query:    63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
              M EVAEPYIRRRA+RHLEKGR+VIF AGTGNP+FTTDTAA+LR  EI A+V+LK T VD
Sbjct:   106 AMQEVAEPYIRRRAIRHLEKGRIVIFGAGTGNPYFTTDTAASLRAMEIGADVILKGTKVD 165

Query:   123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
             GVY  +P+++P A     LTY EV  K L VMD TA +LC +NN+P++VF++   GNI K
Sbjct:   166 GVYSADPKKDPTAIKYPRLTYLEVLKKGLQVMDATATSLCMDNNLPIIVFDITTYGNIKK 225

Query:   183 AIQGERVGTLIGG 195
              + GE +GT++ G
Sbjct:   226 VVCGEEIGTIVKG 238

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|BA_3963 BA_3963 "uridylate kinase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 115/194 (59%), Positives = 152/194 (78%)

Query:     3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
             +VA+VVGGGNI+RG       G+DR+ ADY+GMLATVMN++ LQ ++E+IGI TRVQT+ 
Sbjct:    47 EVAVVVGGGNIWRG-KIGSEMGMDRAGADYMGMLATVMNSLALQDSLENIGIQTRVQTSI 105

Query:    63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA-TNV 121
              M +VAEPYIRR+AVRHLEK RVVIFAAGTGNP+F+TDT AALR AEI A+V+L A  NV
Sbjct:   106 EMRQVAEPYIRRKAVRHLEKKRVVIFAAGTGNPYFSTDTTAALRAAEIEADVILMAKNNV 165

Query:   122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
             DGVY+ +P  +P A   +TLTY +V  + L VMD TA +LC +N+IP++VF++ + GNI 
Sbjct:   166 DGVYNADPSIDPTATKYETLTYLDVLKEGLGVMDSTASSLCMDNDIPLIVFSVMEKGNIK 225

Query:   182 KAIQGERVGTLIGG 195
             +A+ GE +GT++ G
Sbjct:   226 RAVLGENIGTVVRG 239

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|DET_0375 DET_0375 "uridylate kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 113/192 (58%), Positives = 145/192 (75%)

Query:     3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
             +VAIVVGGGNI+RGA+AA   G+DR SADY GMLAT++NA+ LQ  +E  GI TR Q+A 
Sbjct:    47 EVAIVVGGGNIWRGATAA-KEGIDRVSADYAGMLATIINALTLQDALEREGIVTRTQSAL 105

Query:    63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-V 121
              + +VAEPYI RRA+RHLEKGRVVIFA GTGNP+ TTDTAAALR  EI A+V+L A N V
Sbjct:   106 AVQQVAEPYICRRAIRHLEKGRVVIFAGGTGNPYMTTDTAAALRAIEIEADVLLMAKNKV 165

Query:   122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
             DGVY  +P+++P A L   LT+ E  +K L VMD TA++LC +N +P++VF+L    ++ 
Sbjct:   166 DGVYTADPKKHPEATLFQHLTHMEAINKRLQVMDATALSLCLDNKLPIIVFDLQSSESLV 225

Query:   182 KAIQGERVGTLI 193
              AI G+ +GTLI
Sbjct:   226 SAISGQPIGTLI 237

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|P65929 pyrH "Uridylate kinase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 107/191 (56%), Positives = 142/191 (74%)

Query:     3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
             Q+A+V+GGGN FRGA      G++R+ +DY+GML TVMN++ LQ  +E  GI TRVQTA 
Sbjct:    70 QIAVVIGGGNFFRGAQLQ-QLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAI 128

Query:    63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
              M +VAEPY+  RAVRHLEKGRVVIF AG G P+F+TDT AA R  EI A+VVL A  VD
Sbjct:   129 TMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVD 188

Query:   123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
             GV+ ++PR NP A LL  ++++EV  + L V D TA +LC +N +P++VFNL   GNIA+
Sbjct:   189 GVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIAR 248

Query:   183 AIQGERVGTLI 193
             A++GE++GTL+
Sbjct:   249 AVRGEKIGTLV 259

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006225 "UDP biosynthetic process" evidence=IDA

GO:0033862 "UMP kinase activity" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0051289 "protein homotetramerization" evidence=IPI

TIGR_CMR|ECH_0266 ECH_0266 "uridylate kinase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 102/191 (53%), Positives = 145/191 (75%)

Query:     3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
             Q+ +VVGGGNIFRGASA+ + G +R+S DYIGMLAT+MNA+ LQ  +E + + +RV +A 
Sbjct:    52 QLCLVVGGGNIFRGASASASFGFERASNDYIGMLATMMNALSLQNALEKVNVQSRVLSAI 111

Query:    63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
              ++ V E YIRRRA+RHLEKGRVVI AAG G+PFFTTDTAAALR  E+  + + K T VD
Sbjct:   112 PITAVCETYIRRRAIRHLEKGRVVICAAGVGSPFFTTDTAAALRGIEMGCDAIFKGTQVD 171

Query:   123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
             GVY  +P++N +A   D ++Y+++ S DL +MD+ A++L +E+++P++VFNL QPG+ A 
Sbjct:   172 GVYSADPKKNADAVRYDKISYRDLLSLDLKIMDVAAVSLAREHSVPIIVFNLGQPGSFAD 231

Query:   183 AIQGERVGTLI 193
              I+G+ + T I
Sbjct:   232 IIRGDGLYTTI 242

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|CBU_1384 CBU_1384 "uridylate kinase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 102/191 (53%), Positives = 142/191 (74%)

Query:     3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
             Q+AIV+GGGN FRGA+    +G++R + DY+GMLAT+MNA+ L+   E   +P R+ +A 
Sbjct:    50 QIAIVIGGGNFFRGAALQA-AGINRITGDYMGMLATLMNALALRDAFERSNLPVRILSAI 108

Query:    63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
              M+ VA+ + RR+A+ HL++GRVVIFAAGTGNP  TTD+AA+LR  EINA+VVLKATNVD
Sbjct:   109 PMTGVADAFHRRKAIHHLQQGRVVIFAAGTGNPLVTTDSAASLRGIEINADVVLKATNVD 168

Query:   123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
             GVY D+P +NP A+L   L+YQE   K+L+VMD+ A   C++ N+P+ VFN+N+PG +  
Sbjct:   169 GVYSDDPAKNPQAKLYKHLSYQEALKKELAVMDLAAFCQCRDYNMPLRVFNINKPGALLS 228

Query:   183 AIQGERVGTLI 193
              I  +  GTL+
Sbjct:   229 VIMNQEEGTLV 239

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|SPO_1662 SPO_1662 "uridylate kinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 106/194 (54%), Positives = 140/194 (72%)

Query:     3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
             ++ +V+GGGNIFRG S A   G++R++ADY+GMLATVMNA+ +QA +E +G+ TRV +A 
Sbjct:    59 EICMVIGGGNIFRGLSGAAQ-GMERTTADYMGMLATVMNALGMQAALEGLGVFTRVISAI 117

Query:    63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-V 121
             RM EVAEPYIRRRAVRHLEK RV IFAAGTGNP+FTTDTAA LR  E+  E +    N V
Sbjct:   118 RMDEVAEPYIRRRAVRHLEKKRVCIFAAGTGNPYFTTDTAATLRANEMACEAIFMGKNGV 177

Query:   122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
             DGVYD +P  + +A   D ++Y EV +K L VMD +AI L ++NN+P++VF+L+  G   
Sbjct:   178 DGVYDKDPALHDDAVRYDEISYDEVLAKRLKVMDASAIALARDNNLPLIVFSLDTAGGFR 237

Query:   182 KAIQGERVGTLIGG 195
               + GE   T + G
Sbjct:   238 GILAGEGTYTKVQG 251

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|CJE_1410 CJE_1410 "uridylate kinase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 102/185 (55%), Positives = 137/185 (74%)

Query:     3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
             +V IV+GGGNI RG SAA    + R+S D++GMLATV+NAI +Q  +ES G+  RVQ+A 
Sbjct:    45 EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQSAI 104

Query:    63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
             +M    E YI RRA RHLEKGRVV+FAAGTGNP+FTTDT A LR  EI+A++V+KAT V+
Sbjct:   105 QMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKATKVN 164

Query:   123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
             GVYD +P++  +A  L+TL+Y E    ++ VMD TAI L ++N +P+VV N+ + GN+ K
Sbjct:   165 GVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFEEGNLLK 224

Query:   183 AIQGE 187
              IQG+
Sbjct:   225 IIQGD 229

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2BVI4	PYRH_PROM5	2, ., 7, ., 4, ., 2, 2	0.6335	0.9223	0.8119	yes	no
Q0BTM0	PYRH_GRABC	2, ., 7, ., 4, ., 2, 2	0.6270	0.8932	0.7479	yes	no
Q8DM63	PYRH_THEEB	2, ., 7, ., 4, ., 2, 2	0.6377	0.9466	0.8057	yes	no
Q3ALP7	PYRH_SYNSC	2, ., 7, ., 4, ., 2, 2	0.6510	0.9271	0.8059	yes	no
Q7U5F5	PYRH_SYNPX	2, ., 7, ., 4, ., 2, 2	0.6562	0.9271	0.8059	yes	no
Q3A397	PYRH_PELCD	2, ., 7, ., 4, ., 2, 2	0.6165	0.9320	0.7966	yes	no
A6TRM1	PYRH_ALKMQ	2, ., 7, ., 4, ., 2, 2	0.6335	0.9126	0.7966	yes	no
Q7VD61	PYRH_PROMA	2, ., 7, ., 4, ., 2, 2	0.6387	0.9223	0.8016	yes	no
Q39W86	PYRH_GEOMG	2, ., 7, ., 4, ., 2, 2	0.6010	0.9320	0.8033	yes	no
Q5N3B6	PYRH_SYNP6	2, ., 7, ., 4, ., 2, 2	0.6598	0.9514	0.8166	yes	no
Q2JJE2	PYRH_SYNJB	2, ., 7, ., 4, ., 2, 2	0.6770	0.9320	0.7588	yes	no
Q3B5T8	PYRH_PELLD	2, ., 7, ., 4, ., 2, 2	0.5916	0.9223	0.8085	yes	no
Q0I8L5	PYRH_SYNS3	2, ., 7, ., 4, ., 2, 2	0.6806	0.9223	0.8085	yes	no
Q8YXK5	PYRH_NOSS1	2, ., 7, ., 4, ., 2, 2	0.6632	0.9466	0.8057	yes	no
Q3AB79	PYRH_CARHZ	2, ., 7, ., 4, ., 2, 2	0.6391	0.9368	0.7975	yes	no
P59003	PYRH_CHLTE	2, ., 7, ., 4, ., 2, 2	0.6020	0.9223	0.7949	yes	no
Q7V2F8	PYRH_PROMP	2, ., 7, ., 4, ., 2, 2	0.6387	0.9223	0.8119	yes	no
A5GSA3	PYRH_SYNR3	2, ., 7, ., 4, ., 2, 2	0.6544	0.9223	0.8016	yes	no
A3DE57	PYRH_CLOTH	2, ., 7, ., 4, ., 2, 2	0.6282	0.9126	0.8	yes	no
Q3AV98	PYRH_SYNS9	2, ., 7, ., 4, ., 2, 2	0.6770	0.9271	0.8059	yes	no
Q2JS42	PYRH_SYNJA	2, ., 7, ., 4, ., 2, 2	0.6752	0.9417	0.7637	yes	no
A3PBP6	PYRH_PROM0	2, ., 7, ., 4, ., 2, 2	0.6282	0.9223	0.8119	yes	no
Q7V6C2	PYRH_PROMM	2, ., 7, ., 4, ., 2, 2	0.6701	0.9223	0.8016	yes	no
A2BQ03	PYRH_PROMS	2, ., 7, ., 4, ., 2, 2	0.6335	0.9223	0.8119	yes	no
A2C7Q3	PYRH_PROM3	2, ., 7, ., 4, ., 2, 2	0.6649	0.9223	0.8016	yes	no
Q6MGY5	PYRH_BDEBA	2, ., 7, ., 4, ., 2, 2	0.5916	0.9223	0.8016	yes	no
A8G3N7	PYRH_PROM2	2, ., 7, ., 4, ., 2, 2	0.6387	0.9223	0.8119	yes	no
A4J5Z1	PYRH_DESRM	2, ., 7, ., 4, ., 2, 2	0.6071	0.9466	0.8057	yes	no
A0LJ65	PYRH_SYNFM	2, ., 7, ., 4, ., 2, 2	0.6165	0.9320	0.7836	yes	no
A7H724	PYRH_ANADF	2, ., 7, ., 4, ., 2, 2	0.6145	0.9271	0.7670	yes	no
Q3MFI4	PYRH_ANAVT	2, ., 7, ., 4, ., 2, 2	0.6632	0.9466	0.8057	yes	no
A5GJF0	PYRH_SYNPW	2, ., 7, ., 4, ., 2, 2	0.6701	0.9223	0.8085	yes	no
Q74BW2	PYRH_GEOSL	2, ., 7, ., 4, ., 2, 2	0.5906	0.9320	0.8033	yes	no
Q74IR8	PYRH_LACJO	2, ., 7, ., 4, ., 2, 2	0.5927	0.9320	0.7966	yes	no
P43891	PYRH_THET8	2, ., 7, ., 4, ., 2, 2	0.6354	0.9174	0.8111	yes	no
Q1IZI8	PYRH_DEIGD	2, ., 7, ., 4, ., 2, 2	0.6302	0.9174	0.7354	yes	no
Q46GQ4	PYRH_PROMT	2, ., 7, ., 4, ., 2, 2	0.6544	0.9223	0.8016	yes	no
A1BHZ3	PYRH_CHLPD	2, ., 7, ., 4, ., 2, 2	0.5968	0.9223	0.8050	yes	no
Q2IMM2	PYRH_ANADE	2, ., 7, ., 4, ., 2, 2	0.6354	0.9271	0.7609	yes	no
Q31QY1	PYRH_SYNE7	2, ., 7, ., 4, ., 2, 2	0.6598	0.9514	0.8166	yes	no
A4XM00	PYRH_CALS8	2, ., 7, ., 4, ., 2, 2	0.6282	0.9077	0.7824	yes	no
Q8R6G5	PYRH_FUSNN	2, ., 7, ., 4, ., 2, 2	0.5968	0.9223	0.7949	yes	no
O66929	PYRH_AQUAE	2, ., 7, ., 4, ., 2, 2	0.5979	0.9320	0.8	yes	no
Q10Y48	PYRH_TRIEI	2, ., 7, ., 4, ., 2, 2	0.6517	0.9708	0.8196	yes	no
Q1D1I1	PYRH_MYXXD	2, ., 7, ., 4, ., 2, 2	0.6051	0.9368	0.772	yes	no
Q31C12	PYRH_PROM9	2, ., 7, ., 4, ., 2, 2	0.6302	0.9271	0.8162	yes	no
Q72KD9	PYRH_THET2	2, ., 7, ., 4, ., 2, 2	0.6354	0.9174	0.8111	yes	no
A2C0Y1	PYRH_PROM1	2, ., 7, ., 4, ., 2, 2	0.6544	0.9223	0.8016	yes	no
Q24UF9	PYRH_DESHY	2, ., 7, ., 4, ., 2, 2	0.6302	0.9271	0.7958	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.963
4th Layer	2.7.4.22	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G18680	aspartate/glutamate/uridylate kinase family protein; aspartate/glutamate/uridylate kinase family protein; FUNCTIONS IN- uridylate kinase activity, UMP kinase activity; INVOLVED IN- amino acid biosynthetic process, 'de novo' pyrimidine base biosynthetic process, pyrimidine nucleotide biosynthetic process; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Aspartate/glutamate/uridylate kinase (InterPro-IPR001048), Uridylate kinase, bacteria (InterPro-IPR015963); BEST Arabidopsis thaliana protein match is- aspartate/ [...] (339 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT3G53900	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativ [...] (296 aa)				•		•	•		0.996
	RRF	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR); RIBOSOME RECYCLING FACTOR, CHLOROPLAST [...] (275 aa)	•			•			•		0.993
	NDPK2	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding / nucleoside diphosphate kinase/ protein b [...] (231 aa)				•		•	•		0.988
	AT3G54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); encodes the bi-functional oro [...] (476 aa)				•		•	•		0.985
	RIF10	RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid [...] (922 aa)	•			•		•	•		0.981
	NDPK1	NDPK1; ATP binding / nucleoside diphosphate kinase; nucleoside diphosphate kinase type 1 (NDPK1 [...] (169 aa)				•		•	•		0.979
	AT4G11120	translation elongation factor Ts (EF-Ts), putative; translation elongation factor Ts (EF-Ts), p [...] (395 aa)	•			•	•		•		0.974
	AT3G13120	30S ribosomal protein S10, chloroplast, putative; 30S ribosomal protein S10, chloroplast, putat [...] (191 aa)	•			•	•		•		0.962
	NDPK3	NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3); ATP binding / nucleoside diphosphate kinase; nucleosid [...] (238 aa)						•	•		0.960
	AT1G17410	nucleoside diphosphate kinase family protein; nucleoside diphosphate kinase family protein; FUN [...] (181 aa)						•	•		0.960

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
cd04254	231	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t	1e-127
PRK00358	231	PRK00358, pyrH, uridylate kinase; Provisional	1e-122
cd04239	229	cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase	1e-112
TIGR02075	232	TIGR02075, pyrH_bact, uridylate kinase	1e-105
COG0528	238	COG0528, PyrH, Uridylate kinase [Nucleotide transp	1e-104
PRK14558	231	PRK14558, pyrH, uridylate kinase; Provisional	3e-65
PRK14557	247	PRK14557, pyrH, uridylate kinase; Provisional	1e-56
PRK14556	249	PRK14556, pyrH, uridylate kinase; Provisional	2e-48
cd04253	221	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k	2e-35
TIGR02076	221	TIGR02076, pyrH_arch, uridylate kinase, putative	5e-33
cd02115	248	cd02115, AAK, Amino Acid Kinases (AAK) superfamily	3e-26
pfam00696	230	pfam00696, AA_kinase, Amino acid kinase family	4e-24
COG0527	447	COG0527, LysC, Aspartokinases [Amino acid transpor	3e-13
cd04242	251	cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k	1e-12
cd04255	262	cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i	1e-12
TIGR00657	441	TIGR00657, asp_kinases, aspartate kinase	3e-12
cd04234	227	cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa	6e-12
COG1608	252	COG1608, COG1608, Predicted archaeal kinase [Gener	1e-11
COG0263	369	COG0263, ProB, Glutamate 5-kinase [Amino acid tran	2e-10
cd04241	252	cd04241, AAK_FomA-like, AAK_FomA-like: This CD inc	4e-10
TIGR01027	363	TIGR01027, proB, glutamate 5-kinase	1e-09
cd04246	239	cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino	1e-09
PRK08210	403	PRK08210, PRK08210, aspartate kinase I; Reviewed	3e-09
PRK05429	372	PRK05429, PRK05429, gamma-glutamyl kinase; Provisi	3e-09
cd04260	244	cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A	5e-09
cd04256	284	cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate	8e-09
cd04259	295	cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki	1e-08
PRK09436	819	PRK09436, thrA, bifunctional aspartokinase I/homos	3e-08
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	3e-08
cd04261	239	cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino	4e-08
cd04243	293	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino	5e-08
cd04257	294	cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina	5e-08
PRK08961	861	PRK08961, PRK08961, bifunctional aspartate kinase/	7e-08
cd04244	298	cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino	8e-08
PRK12314	266	PRK12314, PRK12314, gamma-glutamyl kinase; Provisi	2e-07
TIGR01092	715	TIGR01092, P5CS, delta l-pyrroline-5-carboxylate s	1e-06
PLN02418	718	PLN02418, PLN02418, delta-1-pyrroline-5-carboxylat	2e-06
TIGR00656	401	TIGR00656, asp_kin_monofn, aspartate kinase, monof	5e-06
COG2054	212	COG2054, COG2054, Uncharacterized archaeal kinase	6e-06
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	2e-05
PRK13402	368	PRK13402, PRK13402, gamma-glutamyl kinase; Provisi	2e-05
PRK08373	341	PRK08373, PRK08373, aspartate kinase; Validated	5e-05
PRK08841	392	PRK08841, PRK08841, aspartate kinase; Validated	5e-05
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	5e-05
cd04240	203	cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amin	2e-04
cd04245	288	cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami	2e-04
cd04249	252	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glut	5e-04
TIGR02078	327	TIGR02078, AspKin_pair, Pyrococcus aspartate kinas	0.001
cd04258	292	cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami	0.002
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	0.003

>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score =  357 bits (919), Expect = e-127
 Identities = 136/192 (70%), Positives = 163/192 (84%), Gaps = 1/192 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +VAIVVGGGNIFRGASAA   G+DR++ADY+GMLATV+NA+ LQ  +ES+G+ TRV +A 
Sbjct: 41  EVAIVVGGGNIFRGASAAEA-GMDRATADYMGMLATVINALALQDALESLGVKTRVMSAI 99

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M  VAEPYIRRRA+RHLEKGRVVIFA GTGNPFFTTDTAAALR  EINA+V+LKAT VD
Sbjct: 100 PMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVD 159

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P++NPNA+  D LTY EV SK L VMD TA TLC++NN+P+VVFN+N+PGN+ K
Sbjct: 160 GVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLK 219

Query: 183 AIQGERVGTLIG 194
           A++GE VGTLI 
Sbjct: 220 AVKGEGVGTLIS 231

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231

>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional

 Score =  344 bits (885), Expect = e-122
 Identities = 126/192 (65%), Positives = 158/192 (82%), Gaps = 1/192 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +VAIVVGGGNIFRG   A   G+DR++ADY+GMLATVMNA+ LQ  +E  G+ TRVQ+A 
Sbjct: 41  EVAIVVGGGNIFRGYIGAAA-GMDRATADYMGMLATVMNALALQDALERAGVDTRVQSAI 99

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M +VAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALR  EI A+V+LKATNVD
Sbjct: 100 PMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVD 159

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P+++P+A+  D LTY EV  K L VMD TAI+L ++N IP++VFN+N+PGN+ +
Sbjct: 160 GVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKR 219

Query: 183 AIQGERVGTLIG 194
            ++GE +GTL+ 
Sbjct: 220 VVKGEHIGTLVS 231

Length = 231

>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

 Score =  319 bits (819), Expect = e-112
 Identities = 122/193 (63%), Positives = 152/193 (78%), Gaps = 1/193 (0%)

Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
            +VAIVVGGGNI RG  AA   G+ R++ADYIGMLATVMNA+ LQ  +E +G+ TRV +A
Sbjct: 38  VEVAIVVGGGNIARGYIAAAR-GMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSA 96

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
             M  VAEPYIRRRA+RHLEKGR+VIF  GTGNP FTTDTAAALR  EI A+V+LKATNV
Sbjct: 97  IPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNV 156

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGVYD +P++NP+A+  D ++Y E+  K L VMD TA+TLC+ N IP++VFN  +PGN+ 
Sbjct: 157 DGVYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLL 216

Query: 182 KAIQGERVGTLIG 194
           +A++GE VGTLI 
Sbjct: 217 RALKGEHVGTLIE 229

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229

>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase

 Score =  301 bits (772), Expect = e-105
 Identities = 112/191 (58%), Positives = 151/191 (79%), Gaps = 1/191 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +V IV+GGGNIFRG SAA   G+DR SADY+GMLATV+N + L+  +E +G+ TRV +A 
Sbjct: 42  EVGIVIGGGNIFRGVSAA-ELGIDRVSADYMGMLATVINGLALRDALEKLGLKTRVLSAI 100

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M ++ E YIRR+A++HLEKG+VVIF+ GTGNPFFTTDTAAALR  EINA+V+LK TNVD
Sbjct: 101 SMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNVD 160

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVY  +P++N +A+  DT+TY E   K+L VMD+TA  L ++NN+P+VVFN+++PG + K
Sbjct: 161 GVYTADPKKNKDAKKYDTITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDKPGALKK 220

Query: 183 AIQGERVGTLI 193
            I G+ +GTL+
Sbjct: 221 VILGKGIGTLV 231

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232

>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism]

 Score =  300 bits (771), Expect = e-104
 Identities = 119/195 (61%), Positives = 153/195 (78%), Gaps = 2/195 (1%)

Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
            +VA+VVGGGNI RG   A  +G+DR +ADY+GMLATVMNA+ LQ  +E +G+ TRVQ+A
Sbjct: 45  VEVAVVVGGGNIARGYIGA-AAGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSA 103

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN- 120
             M +VAEPY RR A+RHLEKGRVVIF  GTGNP FTTDTAAALR  EI A+V+LKATN 
Sbjct: 104 IAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNK 163

Query: 121 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNI 180
           VDGVYD +P+++P+A+  DTLTY EV    L VMD TA +L ++N IP++VFN+N+PGN+
Sbjct: 164 VDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNL 223

Query: 181 AKAIQGERVGTLIGG 195
            +A++GE VGT++  
Sbjct: 224 KRALKGEEVGTIVEP 238

Length = 238

>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional

 Score =  200 bits (511), Expect = 3e-65
 Identities = 82/192 (42%), Positives = 120/192 (62%), Gaps = 3/192 (1%)

Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           F++ IV+G GN+FRG        L  + AD IGML TV+NA++L+   E  G+   + + 
Sbjct: 40  FKIGIVIGAGNLFRGVEL---KELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQ 96

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
                  EP        +   G +VIFA GT NPFFTTDTAAALR  E+ A++++KAT V
Sbjct: 97  IVNLPSVEPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKV 156

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DG+YD +P++ P+A+ +D LT+ E     L VMD  A ++C++  I ++V N  +PGN+ 
Sbjct: 157 DGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLL 216

Query: 182 KAIQGERVGTLI 193
           KA++GE VGTL+
Sbjct: 217 KALKGENVGTLV 228

Length = 231

>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional

 Score =  178 bits (454), Expect = 1e-56
 Identities = 84/193 (43%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQTA 61
           +V+IV+GGGNIFRG   A   G+DR  AD IG L T++N++ L+  + S      RV T+
Sbjct: 45  EVSIVIGGGNIFRG-HLAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTS 103

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN- 120
              + VAEPYIR RAV HL+ G +VIF  G G PF TTD  +  R  E+N++ +L A   
Sbjct: 104 IPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQG 163

Query: 121 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNI 180
           VDGV+  +P+ N +A++   L Y +V  +++ VMD  A+ L ++ N+P  VFN ++PG +
Sbjct: 164 VDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVM 223

Query: 181 AKAIQGERVGTLI 193
            +   GE VGTLI
Sbjct: 224 RRICLGEHVGTLI 236

Length = 247

>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional

 Score =  158 bits (400), Expect = 2e-48
 Identities = 83/191 (43%), Positives = 125/191 (65%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           ++A+VVGGGNI RG  A   + + R++AD +GM+AT++NA+ L+  + S G+   V +A 
Sbjct: 56  ELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAK 115

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            +  + +        + L KGRV+IFA GTGNPF TTDT A+LR  EI A+ +LKAT V+
Sbjct: 116 GVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVN 175

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P +  +A+  D +T+ EV SK+L+VMD+ A T C++  IP+ VF+L QP  +  
Sbjct: 176 GVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVD 235

Query: 183 AIQGERVGTLI 193
           A+   + GT +
Sbjct: 236 AVLDSKYGTWV 246

Length = 249

>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score =  123 bits (312), Expect = 2e-35
 Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 29/205 (14%)

Query: 2   FQVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESI--GIPTRV 58
            +VA+VVGGG + R   S A   G   +  D IG++AT +NA  L A +      +PT  
Sbjct: 34  HKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNARLLIAALGDAYPPVPTSY 93

Query: 59  QTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA 118
           + A                     G++V+   GT  P  +TD  AAL    + A++++ A
Sbjct: 94  EEALEAMF---------------TGKIVV-MGGT-EPGQSTDAVAALLAERLGADLLINA 136

Query: 119 TNVDGVYDDNPRRNPNARLLDTLTYQE----VTSKDL-----SVMDMTAITLCQENNIPV 169
           TNVDGVY  +PR++P+A+  D L+  E    V             D  A  + + + I  
Sbjct: 137 TNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKT 196

Query: 170 VVFNLNQPGNIAKAIQGERVGTLIG 194
           +V +   P N+ +A++GE VGT+I 
Sbjct: 197 IVVDGRDPENLERALKGEFVGTIIE 221

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221

>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative

 Score =  117 bits (296), Expect = 5e-33
 Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 24/202 (11%)

Query: 2   FQVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT 60
            +V +VVGGG   R     A   G   +  D IG+ AT +NA+ L A +     P   + 
Sbjct: 33  HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAMLLIAALGDDAYPKVPEN 92

Query: 61  AFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 120
                          A+  +  G++V+   G  +P  TTD  AAL      A++++ ATN
Sbjct: 93  F------------EEALEAMSLGKIVV--MGGTHPGHTTDAVAALLAEFSKADLLINATN 138

Query: 121 VDGVYDDNPRRNPNARLLDTLTYQE----VTSKDL-----SVMDMTAITLCQENNIPVVV 171
           VDGVYD +P+++P+A+  D LT +E    V S  +      V+D  A  + + + I  +V
Sbjct: 139 VDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIV 198

Query: 172 FNLNQPGNIAKAIQGERVGTLI 193
            N   P N+ K ++GE VGT+I
Sbjct: 199 VNGRDPENLEKVLKGEHVGTII 220

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 221

>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

 Score =  100 bits (251), Expect = 3e-26
 Identities = 54/219 (24%), Positives = 82/219 (37%), Gaps = 29/219 (13%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGL-----DRSS---ADYIGMLATVMNAIFLQATMESIGI 54
           +V +V G G        A    L      R +    D +  +   M+ + + A +E  GI
Sbjct: 31  RVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGI 90

Query: 55  PTRVQTAFRM---------SEVAEPYIRRRAVRHLEKGRVVIFAAGTG--------NPFF 97
                   +                    R    LE G + I +   G            
Sbjct: 91  KAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRG 150

Query: 98  TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV---TSKDLSVM 154
            +D+ AAL  A + A+ ++  T+VDGVY  +PR+ P+A+LL  LTY+E          V+
Sbjct: 151 GSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVL 210

Query: 155 DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
              A        IPV + N   PG +A     +  GTLI
Sbjct: 211 KPKAADPAARAGIPVRIANTENPGALA-LFTPDGGGTLI 248

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248

>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family

 Score = 94.8 bits (236), Expect = 4e-24
 Identities = 44/206 (21%), Positives = 70/206 (33%), Gaps = 44/206 (21%)

Query: 3   QVAIVVGGGNIFRGASAAGNSG------------------LDRSSADYIGMLATVMNAIF 44
           +V +V GGG       AA                      L       +  L   + A  
Sbjct: 34  KVVVVSGGGGFTDKLLAAYGIEAGFVRHTAGATGLVLEAQLAAELNRIVVSLGERLGARA 93

Query: 45  LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGN---------P 95
           +   +   G+P                        LE G V +     G           
Sbjct: 94  VALLLSDGGLPAVRLDL---------VDTEAIKELLEAGVVPVITGFGGENDTGETTTLG 144

Query: 96  FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT-------- 147
             ++DT AAL    + A+ ++  T+VDGVY  +PR+NP+A+L+  L+Y E          
Sbjct: 145 RGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKNPDAKLIPELSYDEAEELLAAGDV 204

Query: 148 SKDLSVMDMTAITLCQENNIPVVVFN 173
           +  + V    A+   +   IPV + N
Sbjct: 205 TGGMKVKHPAALKAARRGGIPVHIIN 230

This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230

>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 45/185 (24%)

Query: 40  MNAIFLQATMESIGIPTRVQTA----------FRMSEVAEPYIRRRAVRHLEKGRVVI-- 87
           ++A  L A + ++G+  R                 + + +    RR +R LE+G+V +  
Sbjct: 121 LSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEGKVPVVA 180

Query: 88  -FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 140
            F     +   TT      D +AA   A + A+ V   T+VDGVY  +PR  P+ARLL  
Sbjct: 181 GFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPE 240

Query: 141 LTYQEVTSKDLSVMDMT----------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVG 190
           ++Y+E        +++           A+     + IP+ + N   P            G
Sbjct: 241 ISYEE-------ALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAP---------G 284

Query: 191 TLIGG 195
           TLI  
Sbjct: 285 TLITA 289

Length = 447

>gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT-- 157
           D  +AL    +NA++++  ++VDG+YD NPR NP+A+L+      EV      +  M   
Sbjct: 145 DRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIP-----EVEEITDEIEAMAGG 199

Query: 158 ---------------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
                          A  +  E  IPVV+ N  +P  +   + GE VGTL 
Sbjct: 200 SGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLF 250

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR. Length = 251

>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 95  PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 152
           P   TD  A L    I A  ++   + DG+Y  +P++N  A  +  ++  E+  KDL   
Sbjct: 159 PPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDL 218

Query: 153 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
           V++   + L Q   +   V + N   PGN+ +A++GE VGT+I
Sbjct: 219 VLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII 261

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 262

>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 21/148 (14%)

Query: 61  AFRMSEVAEPYIRRRAVRHLEKGRVVIFA---AGTGNPFFTT------DTAAALRCAEIN 111
            F  + V    +  R    LE+G + + A     T     TT      D  AAL  A + 
Sbjct: 146 NFGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALK 205

Query: 112 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE---VTSKDLSVMDMTAITLCQENNIP 168
           A+     T+VDG+Y  +PR  P+AR +D ++Y+E   + S    V+    +       IP
Sbjct: 206 ADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIP 265

Query: 169 VVVFNLNQPGNIAKAIQGERVGTLIGGT 196
           +VV +   P         E  GTLI  +
Sbjct: 266 IVVKSTFNP---------EAPGTLIVAS 284

Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441

>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

 Score = 62.1 bits (152), Expect = 6e-12
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 35/179 (19%)

Query: 40  MNAIFLQATMESIGIPTRVQTA---------FRMSEVAEPYIRRRAVRHL-EKGRVVI-- 87
           ++A  L A +   GI  R   A            +         R    L E G+V +  
Sbjct: 60  LSARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVT 119

Query: 88  -FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 140
            F     +   TT      D +AA   A + A+ V   T+VDG+Y  +PR  P ARL+  
Sbjct: 120 GFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPE 179

Query: 141 LTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194
           ++Y E    +L+     V+   A+   ++ NIP+ V N   P         E  GTLI 
Sbjct: 180 ISYDEA--LELAYFGAKVLHPRAVEPARKANIPIRVKNTFNP---------EAPGTLIT 227

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227

>gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function prediction only]

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 109 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT--------AIT 160
           E+  + V+  T+VDGVYD +P + P+ARLL  +  +          D+T        A+ 
Sbjct: 159 ELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGT-DVTGGIAKKLEALL 217

Query: 161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
                   V +FN N+P NI +A++GE VGT I
Sbjct: 218 EIARYGKEVYIFNGNKPENIYRALRGENVGTRI 250

Length = 252

>gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and metabolism]

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 18/109 (16%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVM----- 154
           DT +AL    + A++++  +++DG+YD NPR NP+A+L+  +   E+T  ++  M     
Sbjct: 152 DTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVE--EIT-PEIEAMAGGSG 208

Query: 155 ----------DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
                      + A  +     +PV++ + ++P  I  A++GE VGTL 
Sbjct: 209 SELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLF 257

Length = 369

>gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 19/122 (15%)

Query: 86  VIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE 145
           V+   G G    + D         +  E V+  T+VDGVYD  P   P+A+L+  +    
Sbjct: 136 VVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGS 192

Query: 146 VTSKDLSVM------DMT--------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 191
           +   D+         D+T         +       I V +FN ++P N+ +A+ G  +GT
Sbjct: 193 LE--DILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGT 250

Query: 192 LI 193
            I
Sbjct: 251 RI 252

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 252

>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 16/110 (14%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSV------ 153
           DT +AL    + A++++  T+VDG+YD +PR NP+A+L+  +  +E+T   L V      
Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVV--EEITDLLLGVAGDSGS 203

Query: 154 ------M--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195
                 M   + A  L     +PV++ + ++P  IA A++G  VGTL   
Sbjct: 204 SVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHA 253

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family [Amino acid biosynthesis, Glutamate family]. Length = 363

>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 14/107 (13%)

Query: 78  RHLEKGRVVIFAAG----TGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDD 127
             LE+G VV+  AG      +   TT      DT A    A + A+     T+VDGVY  
Sbjct: 121 EALEEGDVVV-VAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTA 179

Query: 128 NPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVV 171
           +PR  P AR LD ++Y E+    S    V+   ++ L ++ N+P+ V
Sbjct: 180 DPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRV 226

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239

>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 75  RAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVY 125
           R +  LE+G VV+   F   T N   TT      DT AA     + AE V   T+VDG+ 
Sbjct: 125 RILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIM 184

Query: 126 DDNPRRNPNARLLDTLTYQEV 146
             +PR   +ARLLD ++Y EV
Sbjct: 185 TADPRIVEDARLLDVVSYNEV 205

Length = 403

>gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional

 Score = 55.1 bits (134), Expect = 3e-09
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM--- 156
           DT +AL    + A++++  T+VDG+Y  +PR+NP+A+L+      EV      +  M   
Sbjct: 154 DTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIP-----EVEEITDELEAMAGG 208

Query: 157 --------------TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
                          A  +     IPVV+ +  +P  + + + GE VGTL 
Sbjct: 209 AGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLF 259

Length = 372

>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 22/133 (16%)

Query: 74  RRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGV 124
           ++ +  L++G VV+   F   T +   TT      DT AA   A +NAE V   T+VDG+
Sbjct: 122 KKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGI 181

Query: 125 YDDNPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
              +PR  PNAR+LD ++Y EV     +   V+   A+ +  + NIP+ +          
Sbjct: 182 MTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRI---------- 231

Query: 182 KAIQGERVGTLIG 194
           ++   E  GTLI 
Sbjct: 232 RSTMSENPGTLIT 244

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244

>gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT---YQEVTSKDLSVMDM 156
           D+ AA    E+ A++++  ++VDG+YD  P  + +A+L+ T      Q +T    S +  
Sbjct: 181 DSLAARLAVELKADLLILLSDVDGLYDGPP-GSDDAKLIHTFYPGDQQSITFGTKSRVGT 239

Query: 157 -------TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 192
                   A     +    VV+ N      I K ++G++VGT 
Sbjct: 240 GGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTF 282

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Length = 284

>gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)

Query: 45  LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAA 104
           L A  ES      +Q   R+++ A+  I +  +     G  V+   G       +DT+AA
Sbjct: 160 LSARCESEYADALLQK--RLADGAQLIITQGFIARNAHGETVLLGRGG------SDTSAA 211

Query: 105 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITL 161
              A++ A      T+V G++  NP   P+ARLL  L Y   QE+ +    V+    I  
Sbjct: 212 YFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPP 271

Query: 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
            +  NIP+VV +  +P         E  GTLI
Sbjct: 272 ARRANIPMVVRSTERP---------ELSGTLI 294

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 295

>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 16/106 (15%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----VM 154
           D +AA+  A ++A+     T+VDGVY  +PR  P+ARLL +L+YQE    +LS     V+
Sbjct: 208 DYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAM--ELSYFGAKVL 265

Query: 155 DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNST 200
               I    +  IP ++ N   P         +  GTLIG   +  
Sbjct: 266 HPRTIAPIAQFQIPCLIKNTFNP---------QAPGTLIGAESDED 302

Length = 819

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 38/192 (19%)

Query: 29  SADYIGMLATVMNAIFLQATMESIGIPTRVQTA-------------FRMSEVAEPYIRRR 75
           S DYI      ++A  L   +  +GI +   T               R        ++ R
Sbjct: 121 SRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKER 180

Query: 76  AVRHLEKGRV-VI--FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYD 126
               L++G + V+  F   T     TT      D +AA+  A ++A+ +   T+VDGV  
Sbjct: 181 LEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMT 240

Query: 127 DNPRRNPNARLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIA 181
            +PR  P AR++  ++Y E    +LS     V+    I    E  IPV V N   P    
Sbjct: 241 TDPRIVPEARVIPKISYIEAM--ELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNP---- 294

Query: 182 KAIQGERVGTLI 193
                E  GTLI
Sbjct: 295 -----EFPGTLI 301

Length = 465

>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 16/108 (14%)

Query: 78  RHLEKGRVVIFA-----AGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYD 126
             LE+G VVI A        G+   TT      DT+A    A + A+     T+VDGVY 
Sbjct: 121 ELLEEGDVVIVAGFQGINEDGD--ITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYT 178

Query: 127 DNPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVV 171
            +PR  P AR LD ++Y E+    S    V+   ++ L ++  +P+ V
Sbjct: 179 ADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRV 226

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239

>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 16/100 (16%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----VM 154
           D +AAL  A ++AE V   T+VDGVY  +PR+ P+ARLL  L+Y E  + +L+     V+
Sbjct: 205 DYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDE--AMELAYFGAKVL 262

Query: 155 DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194
               I      NIP+ + N   P         E  GTLI 
Sbjct: 263 HPRTIQPAIRKNIPIFIKNTFNP---------EAPGTLIS 293

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293

>gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 24/133 (18%)

Query: 75  RAVRHLEKGRVVI--FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYD 126
           +A        +V+  F A       TT      D +AA+  A ++A+ V   T+VDGVY 
Sbjct: 173 KAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYS 232

Query: 127 DNPRRNPNARLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIA 181
            +PR+  +ARLL +L+YQE  + +LS     V+    I    + NIP+++ N   P    
Sbjct: 233 ADPRKVKDARLLPSLSYQE--AMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNP---- 286

Query: 182 KAIQGERVGTLIG 194
                E  GTLI 
Sbjct: 287 -----EAPGTLIS 294

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Length = 294

>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 99  TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMD 155
           +DT+AA   A++ A  V   T+V G++  NP+  P+ARLL  L Y   QE+ +    V+ 
Sbjct: 215 SDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLH 274

Query: 156 MTAITLCQENNIPVVVFNLNQPGNIAKAIQGE 187
             +I  C++  IP+ + +  +P     +I G+
Sbjct: 275 PRSIKPCRDAGIPMAILDTERPDLSGTSIDGD 306

Length = 861

>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 32/186 (17%)

Query: 25  LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF-------------RMSEVAEPY 71
           L   S DYI      ++A    A + S+GI  R                  R        
Sbjct: 113 LTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYER 172

Query: 72  IRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVD 122
           +R+R +  LE G++ +   F   T +   TT      D +A +  A ++A+ +    +VD
Sbjct: 173 VRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVD 232

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVV---FNL 174
           GV   +PR  P AR +  L+Y E    +L+     V+    +    E  IPV V   FN 
Sbjct: 233 GVMTADPRIVPEARTIPRLSYAEAM--ELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNP 290

Query: 175 NQPGNI 180
             PG +
Sbjct: 291 EAPGTL 296

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298

>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 16/107 (14%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS------- 152
           D  +A+    + A++++  +++DG+YD NPR NP+A+L   +T  E+T + L+       
Sbjct: 157 DRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVT--EITEEILALAGGAGS 214

Query: 153 -------VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 192
                  V  + A     E  I +V+ N   P +I   ++GE +GTL
Sbjct: 215 KFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTL 261

Length = 266

>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 12/108 (11%)

Query: 96  FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ----EVTSKDL 151
           F+  D+ AAL   E+ A++++  ++V+G+YD  P  + +++L+DT   +    E+T    
Sbjct: 166 FWDNDSLAALLALELKADLLILLSDVEGLYD-GPPSDDDSKLIDTFYKEKHQGEITFGTK 224

Query: 152 SVMDMTAITL-------CQENNIPVVVFNLNQPGNIAKAIQGERVGTL 192
           S +    +T              PV++ +   P NI K ++G++VGTL
Sbjct: 225 SRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTL 272

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region [Amino acid biosynthesis, Glutamate family]. Length = 715

>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 15/121 (12%)

Query: 96  FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY----QEVTSKDL 151
           F+  D+ AAL   E+ A++++  ++V+G+Y   P  +P+++L+ T        E+T  + 
Sbjct: 174 FWDNDSLAALLALELKADLLILLSDVEGLYT-GPPSDPSSKLIHTYIKEKHQDEITFGEK 232

Query: 152 SVMD---MTAITLCQEN----NIPVVVFNLNQPGNIAKAIQGERVGTLI---GGTWNSTV 201
           S +    MTA      N     IPVV+ +     NI K ++GERVGTL       W  + 
Sbjct: 233 SRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQDAHLWAPSK 292

Query: 202 S 202
            
Sbjct: 293 E 293

Length = 718

>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 22/146 (15%)

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG---NPFFTT------DTAAALRCAEINA 112
           F  +++       R +  LE+G +V+ A   G     + TT      D  AAL  A + A
Sbjct: 108 FGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKA 167

Query: 113 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE---VTSKDLSVMDMTAITLCQENNIPV 169
           + V   T+V GVY  +PR    A+ +D ++Y+E   + +    V+    +     + +P+
Sbjct: 168 DRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPI 227

Query: 170 VVFNLNQPGNIAKAIQGERVGTLIGG 195
            V +   P            GTLI  
Sbjct: 228 EVRSSFDPEE----------GTLITN 243

This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401

>gnl|CDD|224965 COG2054, COG2054, Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 14/103 (13%)

Query: 98  TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL----SV 153
           T+D+ +    A+  A  V+KAT+VDG+Y++    +P  +L+     +E+ + DL    + 
Sbjct: 117 TSDSISVWIAAKAGATEVVKATDVDGIYEE----DPKGKLV-----REIRASDLKTGETS 167

Query: 154 MDMTAITLCQENNIPVVVFNLNQPGNIAKAIQG-ERVGTLIGG 195
           +D     L  +  +   V N  +P  +  A++G E VGTLI G
Sbjct: 168 VDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210

Length = 212

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 27/90 (30%)

Query: 75  RAVRHLEKGRVVIFAAG------TGNPFFTT------DT-----AAALR--CAEINAEVV 115
           R  RHL+ G+VV+  AG      + N   TT      DT     AAAL     EI     
Sbjct: 120 RIQRHLDAGKVVV-VAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIY---- 174

Query: 116 LKATNVDGVYDDNPRRNPNARLLDTLTYQE 145
              T+V GV   +PR  P A+L+D ++  E
Sbjct: 175 ---TDVPGVLTTDPRLVPEAQLMDEISCDE 201

Length = 587

>gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 22/110 (20%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT-- 157
           D  +A+  A  +A+ ++  +++DG+YD NPR NP+A+L+     ++VT  +  +  M   
Sbjct: 150 DNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLI-----KQVTEINAEIYAMAGG 204

Query: 158 ---------------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 192
                          A  +   + I   + N        + ++G+  GT 
Sbjct: 205 AGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTY 254

Length = 368

>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 20/136 (14%)

Query: 31  DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV------AEPYIR------RRAVR 78
           DYI      ++A+     +E+ GI  +V   + + E       A   I+      +    
Sbjct: 103 DYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYE 162

Query: 79  HLEKGRVVIFAAGTG--NPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPR 130
            LE+GRV +     G  N F  T      D +A      +NA+ VL  ++V+G+Y  +P+
Sbjct: 163 LLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPK 222

Query: 131 RNPNARLLDTLTYQEV 146
             P+ARL+  L+Y E 
Sbjct: 223 LVPSARLIPYLSYDEA 238

Length = 341

>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 12/104 (11%)

Query: 80  LEKGRVVIFAAGTG---NPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPR 130
           LE+ ++VI A   G   N   TT      DT A      +NA+     T+VDGVY  +PR
Sbjct: 125 LEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184

Query: 131 RNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPVVV 171
              NAR LD + +   + +  K   V+ + ++    ++++P+ V
Sbjct: 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRV 228

Length = 392

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 14/86 (16%)

Query: 72  IRRRAVRH-LEKGRVVIFA-----AGTGNPFFTT------DTAAALRCAEINAEVVLKAT 119
           I    +R  L++G VV+ A        G    TT      DT A    A + A+     T
Sbjct: 116 IDPSRIREALDEGDVVVVAGFQGVDEDGE--ITTLGRGGSDTTAVALAAALKADECEIYT 173

Query: 120 NVDGVYDDNPRRNPNARLLDTLTYQE 145
           +VDGVY  +PR  P AR LD ++Y+E
Sbjct: 174 DVDGVYTTDPRIVPKARKLDKISYEE 199

Length = 404

>gnl|CDD|239773 cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 13/99 (13%)

Query: 98  TTDTAAALRCAEINAEVVLKATNVDGVYDDNPR--RNPNARLLDTLTYQEVTSKDLSVMD 155
           T+D+ AA    ++ A+ ++  T+VDG+Y+ + +      A  L             + +D
Sbjct: 115 TSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAEL----------LGETSVD 164

Query: 156 MTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLI 193
                L  +  I   V N + P  +  A++G   VGT I
Sbjct: 165 PAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. Length = 203

>gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 16/80 (20%)

Query: 119 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT-----AITLCQENNIPVVVFN 173
           T+VDG+Y  NPR   N + +  +TY+E+  ++LS    +     A+    E  IP+ + N
Sbjct: 219 TDVDGIYAANPRIVANPKPISEMTYREM--RELSYAGFSVFHDEALIPAIEAGIPINIKN 276

Query: 174 LNQPGNIAKAIQGERVGTLI 193
            N P         E  GTLI
Sbjct: 277 TNHP---------EAPGTLI 287

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. Length = 288

>gnl|CDD|239782 cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP--NARLLDTLTYQEVTSKDLSVMDMT 157
           D AA      +NA++VL  ++V GV D + +     NA+    L  Q V +  + V    
Sbjct: 158 DQAATAIAQLLNADLVL-LSDVSGVLDADKQLISELNAKQAAELIEQGVITDGMIVKVNA 216

Query: 158 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
           A+   Q     + + +   P  +   + GE VGT I
Sbjct: 217 ALDAAQSLRRGIDIASWQYPEQLTALLAGEPVGTKI 252

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). Length = 252

>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 3/64 (4%)

Query: 110 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE--VTSK-DLSVMDMTAITLCQENN 166
           +N+++V   ++V+G++  +P+  P+ARL+  L+Y+E  + +K  +  +   A  L +E  
Sbjct: 192 LNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYK 251

Query: 167 IPVV 170
           IPV+
Sbjct: 252 IPVL 255

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between [Amino acid biosynthesis, Aspartate family]. Length = 327

>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 20/102 (19%)

Query: 99  TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT------SKDLS 152
           +D +AAL    ++AE +   T+V G+Y  +PR  P AR +  +++ E        +K L 
Sbjct: 203 SDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLH 262

Query: 153 VMDMT-AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
              +  AI      NIPV V +   P         E  GTLI
Sbjct: 263 PATLLPAI----RKNIPVFVGSSKDP---------EAGGTLI 291

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 14/78 (17%)

Query: 79  HLEKGRVV----IFAAGTGNPFFTT-------DTAAALRCAEINAEVVLKATNVDGVYDD 127
            L +G VV    I +   G    TT       D +AAL    +NA  V   T+V G+Y  
Sbjct: 171 LLAEGVVVTQGFIGSDEKGR---TTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTT 227

Query: 128 NPRRNPNARLLDTLTYQE 145
           +PR  P A+ +D ++++E
Sbjct: 228 DPRIVPAAKRIDEISFEE 245

Length = 448

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
COG0528	238	PyrH Uridylate kinase [Nucleotide transport and me	100.0
PRK00358	231	pyrH uridylate kinase; Provisional	100.0
PRK14556	249	pyrH uridylate kinase; Provisional	100.0
PRK14558	231	pyrH uridylate kinase; Provisional	100.0
TIGR02075	233	pyrH_bact uridylate kinase. This protein, also cal	100.0
cd04254	231	AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi	100.0
cd04239	229	AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik	100.0
PRK14557	247	pyrH uridylate kinase; Provisional	100.0
cd04253	221	AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP	100.0
TIGR02076	221	pyrH_arch uridylate kinase, putative. This family	100.0
cd02115	248	AAK Amino Acid Kinases (AAK) superfamily, catalyti	100.0
COG1608	252	Predicted archaeal kinase [General function predic	100.0
cd04241	252	AAK_FomA-like AAK_FomA-like: This CD includes a fo	100.0
cd04255	262	AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th	99.98
PRK14058	268	acetylglutamate/acetylaminoadipate kinase; Provisi	99.97
cd04261	239	AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina	99.97
cd04246	239	AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina	99.97
PRK12314	266	gamma-glutamyl kinase; Provisional	99.97
COG0548	265	ArgB Acetylglutamate kinase [Amino acid transport	99.97
cd04234	227	AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK)	99.97
cd04242	251	AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K	99.97
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	99.97
CHL00202	284	argB acetylglutamate kinase; Provisional	99.97
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	99.97
cd04260	244	AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase	99.97
cd04240	203	AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin	99.97
PRK13402	368	gamma-glutamyl kinase; Provisional	99.97
PLN02512	309	acetylglutamate kinase	99.97
PRK08841	392	aspartate kinase; Validated	99.97
cd04251	257	AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina	99.97
cd04245	288	AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki	99.97
PRK05429	372	gamma-glutamyl kinase; Provisional	99.96
cd04244	298	AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina	99.96
PRK08210	403	aspartate kinase I; Reviewed	99.96
PTZ00489	264	glutamate 5-kinase; Provisional	99.96
PRK00942	283	acetylglutamate kinase; Provisional	99.96
cd04250	279	AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase	99.96
cd04249	252	AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina	99.96
cd04238	256	AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate	99.96
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	99.96
PRK06635	404	aspartate kinase; Reviewed	99.96
cd04259	295	AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super	99.96
cd04247	306	AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa	99.95
cd04257	294	AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa	99.95
PRK07431	587	aspartate kinase; Provisional	99.95
cd04243	293	AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina	99.95
cd04256	284	AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase	99.95
cd04258	292	AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki	99.95
PRK06291	465	aspartate kinase; Provisional	99.95
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	99.95
PRK09034	454	aspartate kinase; Reviewed	99.95
PLN02551	521	aspartokinase	99.94
PRK08373	341	aspartate kinase; Validated	99.94
PRK09084	448	aspartate kinase III; Validated	99.94
TIGR02078	327	AspKin_pair Pyrococcus aspartate kinase subunit, p	99.94
PRK05925	440	aspartate kinase; Provisional	99.94
cd04252	248	AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam	99.94
TIGR01890	429	N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi	99.94
PRK09181	475	aspartate kinase; Validated	99.93
cd04237	280	AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG)	99.93
COG0263	369	ProB Glutamate 5-kinase [Amino acid transport and	99.93
cd04248	304	AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S	99.93
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	99.93
PF00696	242	AA_kinase: Amino acid kinase family Match to Gluta	99.93
PRK05279	441	N-acetylglutamate synthase; Validated	99.93
cd04235	308	AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot	99.92
PRK12353	314	putative amino acid kinase; Reviewed	99.92
TIGR00761	231	argB acetylglutamate kinase. This model describes	99.92
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	99.92
cd04236	271	AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA	99.92
COG2054	212	Uncharacterized archaeal kinase related to asparto	99.92
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	99.92
PRK12352	316	putative carbamate kinase; Reviewed	99.91
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	99.9
TIGR00746	310	arcC carbamate kinase. The seed alignment for this	99.9
PLN02825	515	amino-acid N-acetyltransferase	99.89
PRK12454	313	carbamate kinase-like carbamoyl phosphate syntheta	99.89
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.88
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	99.87
PRK12686	312	carbamate kinase; Reviewed	99.87
PRK12354	307	carbamate kinase; Reviewed	99.86
PRK04531	398	acetylglutamate kinase; Provisional	99.86
KOG1154	285	consensus Gamma-glutamyl kinase [Amino acid transp	99.85
PRK09411	297	carbamate kinase; Reviewed	99.81
COG0549	312	ArcC Carbamate kinase [Amino acid transport and me	99.69
KOG2436	520	consensus Acetylglutamate kinase/acetylglutamate s	98.48
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	84.74

>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=3e-39  Score=260.68  Aligned_cols=193  Identities=62%  Similarity=0.991  Sum_probs=183.2

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      +++.||.|||+.+|++..+. .|+++...|++++++|++|+.++++.|+..|+++..+++..+..+.+|++.+...++|+
T Consensus        45 ~eV~iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~  123 (238)
T COG0528          45 VEVAVVVGGGNIARGYIGAA-AGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLE  123 (238)
T ss_pred             cEEEEEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHH
Confidence            58899999999999998666 49999999999999999999999999999999999999988877778888888899999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec-cCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT  160 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltd-V~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~  160 (206)
                      +|+|+|+++++|+|+.++|+.|++.|++++||.++..|+ |||||++||+++|+|+.++++|++|+.+.+..+||+.|+.
T Consensus       124 ~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~  203 (238)
T COG0528         124 KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFS  203 (238)
T ss_pred             cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHH
Confidence            999999999999999999999999999999999999995 9999999999999999999999999998889999999999


Q ss_pred             HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      .+.++++|++++|.+++++|.+++.|+..||+|.+
T Consensus       204 l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~  238 (238)
T COG0528         204 LARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP  238 (238)
T ss_pred             HHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence            99999999999999999999999999999999863

>PRK00358 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=1.1e-38  Score=262.79  Aligned_cols=192  Identities=66%  Similarity=1.070  Sum_probs=170.3

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      ++++||||||++++++... ..++++...++++++++++|+.+++.+|+++|+++..+++...+.+..++..+.+.++|+
T Consensus        40 ~~vvlV~gGG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~  118 (231)
T PRK00358         40 VEVAIVVGGGNIFRGYIGA-AAGMDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLE  118 (231)
T ss_pred             CeEEEEECCCHHHHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHH
Confidence            4799999999998886532 467776678999999999999988999999999998776665555555555567889999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL  161 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~  161 (206)
                      +|.|||++++.++++.+||++|+++|.+|+|++++++|||||||++||+.+|++++|++++++|+.+.|+..+|+.+++.
T Consensus       119 ~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~  198 (231)
T PRK00358        119 KGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISL  198 (231)
T ss_pred             CCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHH
Confidence            99999999877788899999999999999999999999999999999999999999999999998777777889999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      |.++|++++|+|+++|++|.++++|+..||+|.
T Consensus       199 a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~  231 (231)
T PRK00358        199 ARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS  231 (231)
T ss_pred             HHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence            999999999999999999999999999999984

>PRK14556 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=8.9e-39  Score=263.61  Aligned_cols=194  Identities=43%  Similarity=0.696  Sum_probs=177.9

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      +++.||.|||+++|+.......|+++...|+++|++|++|+.++...|++.|+++..+++.....+.+++..+.+.++++
T Consensus        55 ~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~  134 (249)
T PRK14556         55 VELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELA  134 (249)
T ss_pred             cEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHh
Confidence            58999999999999953221256999999999999999999999999999999999999987766677777788889999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL  161 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~  161 (206)
                      +|.|+|+.|++|+|+++||++|+++|..++||.++++|||||||++||+++|++++++++++.|..+.+..+|+..|++.
T Consensus       135 ~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~  214 (249)
T PRK14556        135 KGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQ  214 (249)
T ss_pred             CCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988766677889999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +.++|+|++|+|+++|++|.+++.|+..||+|.-
T Consensus       215 a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~  248 (249)
T PRK14556        215 CRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL  248 (249)
T ss_pred             HHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence            9999999999999999999999999999999964

>PRK14558 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=2.9e-38  Score=260.30  Aligned_cols=192  Identities=43%  Similarity=0.741  Sum_probs=168.8

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      ++++||||||+|++++..   .++++...+.++++++++|+.++..+|.++|++++.+++......-.....+.+..+|+
T Consensus        40 ~~viiV~GgGs~~~g~~~---~~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~  116 (231)
T PRK14558         40 FKIGIVIGAGNLFRGVEL---KELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFR  116 (231)
T ss_pred             CeEEEEECccHHHHHHhc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccchhhhhhHHHHHHHHH
Confidence            479999999999887652   25677778999999999999888889999999998887642110001123578889999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL  161 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~  161 (206)
                      +|.|||++|+.|.+++++|++|+++|..++|+++++||||||||++||+++|+++++++++++|+.+++...+|++++.+
T Consensus       117 ~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~  196 (231)
T PRK14558        117 AGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSI  196 (231)
T ss_pred             CCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHH
Confidence            99999999988889999999999999999999999999999999999999999999999999999888888899999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      |.++|++++|+|+++|++|.+++.|+..||+|.++
T Consensus       197 a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~  231 (231)
T PRK14558        197 CKKYGITILVINFFEPGNLLKALKGENVGTLVVPD  231 (231)
T ss_pred             HHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCCC
Confidence            99999999999999999999999999999999763

>TIGR02075 pyrH_bact uridylate kinase

Probab=100.00  E-value=2.9e-38  Score=260.59  Aligned_cols=192  Identities=57%  Similarity=0.993  Sum_probs=174.3

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      ++++||||||+++++|+ ++++++++...|+++++++++|+.+++..|.++|+++..++++++..+...+..+.++++++
T Consensus        41 ~~vviV~G~Gs~~~~~~-a~~~~~~~~~~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~  119 (233)
T TIGR02075        41 IEVGIVIGGGNIFRGVS-AKELGIDRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLE  119 (233)
T ss_pred             CeEEEEECCCHHHHHHH-HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHH
Confidence            47999999999999987 77799887778999999999999998989999999999999987653333333578888999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec-cCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT  160 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltd-V~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~  160 (206)
                      +|.|||++++.|.++++||++|+++|..|+||+++++|| |||||++||+.+|+++++++++++|+.+.+...+|+.+++
T Consensus       120 ~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~  199 (233)
T TIGR02075       120 KGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFA  199 (233)
T ss_pred             CCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHH
Confidence            999999998878889999999999999999999999999 9999999999999999999999999877777778999999


Q ss_pred             HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      .|.++|++++|+|+.+|++|.++++|+.+||+|.
T Consensus       200 ~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~  233 (233)
T TIGR02075       200 LARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS  233 (233)
T ss_pred             HHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence            9999999999999999999999999999999984

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.

>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=100.00  E-value=1.9e-38  Score=261.38  Aligned_cols=192  Identities=70%  Similarity=1.111  Sum_probs=171.7

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      +++|||||||+|++++ .+++|+.+....++++++++++|+.+++..|+++|+++..+++.+...+......+.++++|+
T Consensus        40 ~~~viVhGgG~~~~~~-~~~~~~~~~~~~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~  118 (231)
T cd04254          40 VEVAIVVGGGNIFRGA-SAAEAGMDRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLE  118 (231)
T ss_pred             CcEEEEECCCcccccc-hhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHH
Confidence            4789999999998664 456688877677899999999999999989999999999999987633332223478899999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL  161 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~  161 (206)
                      +|.|||++++.|.+.+++|++|+++|.+|+|++++++|||||||++||+.+|+++++++++++|+.+.+...+|+.+++.
T Consensus       119 ~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~  198 (231)
T cd04254         119 KGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTL  198 (231)
T ss_pred             CCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHH
Confidence            99999999888888999999999999999999999999999999999999999999999999998777777899999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      |.++|++++|+|+++|++|.++++|+..||+|.
T Consensus       199 a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~  231 (231)
T cd04254         199 CRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS  231 (231)
T ss_pred             HHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence            999999999999999999999999999999984

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be

>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

Probab=100.00  E-value=3.6e-38  Score=259.38  Aligned_cols=192  Identities=63%  Similarity=1.003  Sum_probs=172.1

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      ++++||||||+|++++ .+.++++++...+++++.++++|+.+++.+|+++|+++..+++.++..+...+..+.+..+++
T Consensus        38 ~~vvvV~ggG~~a~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~  116 (229)
T cd04239          38 VEVAIVVGGGNIARGY-IAAARGMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLE  116 (229)
T ss_pred             CEEEEEECCChHHhhH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHh
Confidence            5799999999987654 455678888788999999999999999999999999999999887654433333567889999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL  161 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~  161 (206)
                      +|.|||++|+.|.++++||++|+++|..|+|++|+++|||||||++||+.+|++++|++++++|+.++..+.+|+.+++.
T Consensus       117 ~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~  196 (229)
T cd04239         117 KGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTL  196 (229)
T ss_pred             CCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHH
Confidence            99999999998888999999999999999999999999999999999999999999999999998877667789999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +.+.|++++|+|+++|++|.++++|+..||+|.
T Consensus       197 ~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~  229 (229)
T cd04239         197 CRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE  229 (229)
T ss_pred             HHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence            999999999999999999999999998999884

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als

>PRK14557 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=1.7e-37  Score=257.49  Aligned_cols=197  Identities=43%  Similarity=0.762  Sum_probs=171.6

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHh-CCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~-~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      ++++||||||+.+++| .++++++++...|.+++++|++|+.+++.+|++ .+..+..++...+..+.+++....+.+.|
T Consensus        44 ~~vvVVvGgGn~~rg~-~a~~~~~~~~~~D~ig~~g~~lna~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l  122 (247)
T PRK14557         44 IEVSIVIGGGNIFRGH-LAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHL  122 (247)
T ss_pred             CeEEEEECCcHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHH
Confidence            6899999999988876 577789988889999999999999999999987 36766556555444443444344567779


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee-ccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHH
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT-NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAI  159 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~lt-dV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~  159 (206)
                      ++|.|||++|+.|.+++++|++|+++|.+++||.++++| |||||||+||+.+|+|++|+++++.|+...+...|+..|+
T Consensus       123 ~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~  202 (247)
T PRK14557        123 DNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAAL  202 (247)
T ss_pred             hCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHH
Confidence            999999999998999999999999999999999999994 9999999999999999999999998876545667899999


Q ss_pred             HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCC
Q 028621          160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS  199 (206)
Q Consensus       160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~  199 (206)
                      +.|.++|++++|+|+++|++|.++++|+..||+|.+.+..
T Consensus       203 ~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~~~  242 (247)
T PRK14557        203 LLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDASL  242 (247)
T ss_pred             HHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCccc
Confidence            9999999999999999999999999999999999887654

>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=100.00  E-value=4.9e-34  Score=233.69  Aligned_cols=178  Identities=33%  Similarity=0.522  Sum_probs=155.2

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      .+++||||||+|++.+. .++++++++...|++++.++++|..+++.+++ +|+++++++            .+.+.++|
T Consensus        34 ~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~~------------~~~~~~~l  100 (221)
T cd04253          34 HKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNARLLIAALG-DAYPPVPTS------------YEEALEAM  100 (221)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCCC------------HHHHHHHH
Confidence            47899999999988765 44557777777899999999999999999876 788776442            24567889


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC--------Cc-
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DL-  151 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~-  151 (206)
                      ++|.+||++|+.  +..++|++|+++|.+|+|++++++|||||||++||+.+|++++|++++++|+.++        |. 
T Consensus       101 ~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~  178 (221)
T cd04253         101 FTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSN  178 (221)
T ss_pred             HcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCC
Confidence            999999999873  5689999999999999999999999999999999999999999999999888754        22 


Q ss_pred             CcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       152 ~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +.+|+.+++.+.++|++++|+|+++|++|.++|+|+..||.|.
T Consensus       179 ~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I~  221 (221)
T cd04253         179 EPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTIIE  221 (221)
T ss_pred             cchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEeC
Confidence            3569999999999999999999999999999999999999983

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi

>TIGR02076 pyrH_arch uridylate kinase, putative

Probab=100.00  E-value=1.7e-33  Score=230.39  Aligned_cols=179  Identities=34%  Similarity=0.531  Sum_probs=155.1

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      ++++||||||++++.+. ..++++++....|++++.++++|..++..+|+..++++...+.            ....+++
T Consensus        33 ~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~~------------~~~~~~l  100 (221)
T TIGR02076        33 HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENF------------EEALEAM  100 (221)
T ss_pred             CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCCH------------HHHHHHH
Confidence            47999999999998874 5566777877889999999999999999988877888764432            2345678


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC------CcC--
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------DLS--  152 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------g~~--  152 (206)
                      ..|.+||++|+  .+.+++|++|+++|.+++|++++++|||||||++||+++|++++|++++++|+.++      +.+  
T Consensus       101 ~~g~ipv~~G~--~~~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~  178 (221)
T TIGR02076       101 SLGKIVVMGGT--HPGHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSN  178 (221)
T ss_pred             HcCCEEEEcCC--CCCCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCC
Confidence            88999999986  36789999999999999999999999999999999999999999999999887653      222  


Q ss_pred             -cchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          153 -VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       153 -~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                       .+|+.+++.+.+.+++++|+|+++|++|.++++|+..||.|.
T Consensus       179 ~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~  221 (221)
T TIGR02076       179 EVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTIIE  221 (221)
T ss_pred             ceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEeC
Confidence             459999999999999999999999999999999999999983

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.

>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

Probab=100.00  E-value=7.9e-34  Score=235.19  Aligned_cols=191  Identities=27%  Similarity=0.354  Sum_probs=162.1

Q ss_pred             ceEEEEEcCChhhhhhhhhh--------cCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---
Q 028621            2 FQVAIVVGGGNIFRGASAAG--------NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---   70 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---   70 (206)
                      +++|||||||++++......        .++.+....+.+...++.++..++..+|+++|+++..+++.+...+...   
T Consensus        30 ~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~  109 (248)
T cd02115          30 GRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGH  109 (248)
T ss_pred             CCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeCCCCC
Confidence            47999999999966643211        1234455567778888899999999999999999999999876554311   


Q ss_pred             ------hHHHHHHHHhhCCCEEEEeCCCC--------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCc
Q 028621           71 ------YIRRRAVRHLEKGRVVIFAAGTG--------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNAR  136 (206)
Q Consensus        71 ------~~~~~l~~~l~~g~ipvi~g~~g--------~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~  136 (206)
                            ...+.++++|++|.|||++|+.+        .+++++|++|+.+|.+|+|++|+|+|||||||++||+.+|+++
T Consensus       110 ~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~  189 (248)
T cd02115         110 VGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAK  189 (248)
T ss_pred             cccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCe
Confidence                  12578899999999999999732        2579999999999999999999999999999999999999999


Q ss_pred             ccccccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEE
Q 028621          137 LLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI  193 (206)
Q Consensus       137 ~i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i  193 (206)
                      +|++++++|+.++   |.+.+|++++..+.++|++++|+|+++|++| ++|++++.||+|
T Consensus       190 ~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I  248 (248)
T cd02115         190 LLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI  248 (248)
T ss_pred             ECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence            9999999887764   6677899999999999999999999999999 999999999986

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.

>COG1608 Predicted archaeal kinase [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=227.56  Aligned_cols=190  Identities=28%  Similarity=0.414  Sum_probs=152.0

Q ss_pred             eEEEEEcCChhhhhhhhhhcCCCC-------hhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccccc-ccc-hhH-
Q 028621            3 QVAIVVGGGNIFRGASAAGNSGLD-------RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-VAE-PYI-   72 (206)
Q Consensus         3 ~~iiVhGGG~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~-v~~-~~~-   72 (206)
                      ++|||||||||  ||+.|++|+++       +.-...+.-...++|..++.. |.+.|+++++..|.+... -++ .+. 
T Consensus        40 ~livVHGgGSF--GHp~Ak~~~~~~~~~~~s~~G~~~~~~am~~L~~~V~~~-l~~~Gv~av~~~P~s~~~~~gr~~~~~  116 (252)
T COG1608          40 KLIVVHGGGSF--GHPAAKEFGLEGLKNYLSPLGFSLTHLAMLELNSIVVDA-LLDAGVRAVSVVPISFSTFNGRILYTY  116 (252)
T ss_pred             cEEEEecCccc--cCHHHHHhCccccccccCccchHHHHHHHHHHHHHHHHH-HHhcCCccccccCcceeecCCceeech
Confidence            57899999999  99999999992       111122333445899988887 557999998766665421 111 122 


Q ss_pred             HHHHHHHhhCCCEEEEeCC------CCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHH
Q 028621           73 RRRAVRHLEKGRVVIFAAG------TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV  146 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~------~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~  146 (206)
                      .+.++.+|+.|++||+.|+      .|..++|.|.++.+||+.|++|+++|+|||||||+++|.+.|+++.++++.....
T Consensus       117 l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~  196 (252)
T COG1608         117 LEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVA  196 (252)
T ss_pred             HHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhh
Confidence            5788999999999999995      2456799999999999999999999999999999999998999999888876432


Q ss_pred             hcC-C----cCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          147 TSK-D----LSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       147 ~~~-g----~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      ..- +    +++|  |++++..+.+.+.+++++|+++|++|.++++|+.+||.|.+
T Consensus       197 ~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~l~G~~vGT~I~~  252 (252)
T COG1608         197 LGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRALRGENVGTRIDG  252 (252)
T ss_pred             hcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHHHHhcCCCCceEecC
Confidence            211 1    3445  99999999999999999999999999999999999999863

>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

Probab=100.00  E-value=8.1e-33  Score=230.47  Aligned_cols=186  Identities=23%  Similarity=0.354  Sum_probs=150.5

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh-------hhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch----
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR-------SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP----   70 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~----   70 (206)
                      +++|||||||++  +|.+++++++++       ..+........++|..+++. |.++|+++.++++.++......    
T Consensus        38 ~~vvlVhGgg~~--~~~~~~~~g~~~g~~~~~~~~l~~~~~~~~~ln~~~~~~-l~~~g~~a~~l~~~~~~~~~~g~~~~  114 (252)
T cd04241          38 EKLVLVHGGGSF--GHPKAKEYGLPDGDGSFSAEGVAETHEAMLELNSIVVDA-LLEAGVPAVSVPPSSFFVTENGRIVS  114 (252)
T ss_pred             CCEEEEECCCcc--cCHHHHHhCCCcCCCchhhhhHHHHHHHHHHHHHHHHHH-HHHCCCCeEEEChHHeEEecCCeeee
Confidence            579999999999  666778888763       11233334456899887775 6779999999999886433211    


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCC-----C-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHH
Q 028621           71 YIRRRAVRHLEKGRVVIFAAGT-----G-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ  144 (206)
Q Consensus        71 ~~~~~l~~~l~~g~ipvi~g~~-----g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~  144 (206)
                      ...+.++++|++|.|||++|+.     + ..++++|++|+++|.+|+|++|+|+|||||||++||   |++++|++++++
T Consensus       115 ~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~  191 (252)
T cd04241         115 FDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVG  191 (252)
T ss_pred             ecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCcc
Confidence            1257899999999999998841     2 356899999999999999999999999999999999   789999999986


Q ss_pred             HHhcC----------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEE
Q 028621          145 EVTSK----------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI  193 (206)
Q Consensus       145 e~~~~----------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i  193 (206)
                      ++.++          .+++|  |+++|..+.++|++++|+++++|++|.++++|+.+||+|
T Consensus       192 ~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~l~g~~~GT~i  252 (252)
T cd04241         192 SLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGTRI  252 (252)
T ss_pred             chHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHcCCCCceEC
Confidence            54432          12345  999999999999999999999999999999999999986

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

Probab=99.98  E-value=3.1e-31  Score=221.82  Aligned_cols=182  Identities=25%  Similarity=0.342  Sum_probs=147.7

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      ++++||||||++++.+. .+.+++++....+.+++.++++|..++..++..+|++++..  .        . .+.++.+|
T Consensus        64 ~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i~~--~--------~-~~~l~~lL  132 (262)
T cd04255          64 HKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATLLAKHGGSKVGH--G--------D-LLQLPTFL  132 (262)
T ss_pred             CcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc--c--------c-HHHHHHHH
Confidence            47999999999975432 23457888888899999999999999988887889887421  1        1 24688999


Q ss_pred             hCCCEEEEeCCC-----------C-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhc
Q 028621           81 EKGRVVIFAAGT-----------G-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  148 (206)
Q Consensus        81 ~~g~ipvi~g~~-----------g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  148 (206)
                      ++|.|||++|+.           | .+++|+|++|+++|.+++|++++++|||||||++||+.+|++++|+++++.|+.+
T Consensus       133 ~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~  212 (262)
T cd04255         133 KAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLK  212 (262)
T ss_pred             HCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHH
Confidence            999999999973           2 4688999999999999999999999999999999999999999999999988765


Q ss_pred             C--CcCcchHHHHHHH--HhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          149 K--DLSVMDMTAITLC--QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       149 ~--g~~~~k~~a~~~a--~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +  +...|...+...+  .+..++++|+||++|++|.+++.|+.+||+|+
T Consensus       213 ~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i~  262 (262)
T cd04255         213 KDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTIIR  262 (262)
T ss_pred             HhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEeC
Confidence            4  2223533333222  23346899999999999999999999999985

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional

Probab=99.97  E-value=3.6e-31  Score=222.53  Aligned_cols=185  Identities=20%  Similarity=0.259  Sum_probs=149.9

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh----------------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEeccccc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS----------------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRM   64 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~----------------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~   64 (206)
                      .++|||||||+|  .|.+++++++++++                ++.+.+ ++ ++|..+++ .|+++|++++++++++.
T Consensus        29 ~~~VlVHGgg~~--i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~-~ln~~lv~-~L~~~Gv~a~~l~~~~~  104 (268)
T PRK14058         29 ERVVLVHGGSDE--VNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMA-LINKQLVE-RLQSLGVNAVGLSGLDG  104 (268)
T ss_pred             CCEEEEeCCHHH--HHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCccccCcccC
Confidence            478999999999  55566778876543                233333 45 99999987 58889999999999876


Q ss_pred             cccc------------------------ch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCc
Q 028621           65 SEVA------------------------EP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAE  113 (206)
Q Consensus        65 ~~v~------------------------~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~  113 (206)
                      +.+.                        +.  ...+.++.+|++|.|||++|+    .|. .++++|.+|+++|.+|+|+
T Consensus       105 ~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~  184 (268)
T PRK14058        105 GLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAE  184 (268)
T ss_pred             CEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCC
Confidence            3321                        11  125889999999999999996    233 3589999999999999999


Q ss_pred             EEEEeeccCccccCCCCCCCCCcccccccHHHHhcC-----CcCcchHHHHHHHHhCCC-cEEEEcCCCCchHHHHhcCC
Q 028621          114 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGE  187 (206)
Q Consensus       114 ~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~k~~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~g~  187 (206)
                      +|+|+|||||||+++|+   ++++|++++++|+.++     |.+..|++++..+.++|+ +++|+|+++|++|.+++.|+
T Consensus       185 ~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~  261 (268)
T PRK14058        185 ALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGE  261 (268)
T ss_pred             EEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCC
Confidence            99999999999999883   4689999999887754     334449999999999999 69999999999999999875


Q ss_pred             CcceEEec
Q 028621          188 RVGTLIGG  195 (206)
Q Consensus       188 ~~GT~i~~  195 (206)
                        ||+|.+
T Consensus       262 --GT~I~~  267 (268)
T PRK14058        262 --GTVIVN  267 (268)
T ss_pred             --ceEEec
Confidence              999975

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

Probab=99.97  E-value=9.8e-31  Score=216.49  Aligned_cols=183  Identities=26%  Similarity=0.323  Sum_probs=149.8

Q ss_pred             ceEEEEEcC-Chhhhhhhh-hhcCC--CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-h------
Q 028621            2 FQVAIVVGG-GNIFRGASA-AGNSG--LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P------   70 (206)
Q Consensus         2 ~~~iiVhGG-G~~~~~~~~-~~~~~--l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~------   70 (206)
                      ++++||||| |...+.... .++..  .+...++.+...++++|+.+++..|+++|++++++++.+...+.. .      
T Consensus        32 ~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i  111 (239)
T cd04261          32 NQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARI  111 (239)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCccee
Confidence            468888886 676665432 11221  244556777778899999999999999999999999998754321 1      


Q ss_pred             -h-HHHHHHHHhhCCCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           71 -Y-IRRRAVRHLEKGRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        71 -~-~~~~l~~~l~~g~ipvi~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                       . ..+.++.++++|.|||++|+.+     .    .+++||++|+.+|.+|+|+++++||||||||++||+..|++++++
T Consensus       112 ~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~  191 (239)
T cd04261         112 IDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLD  191 (239)
T ss_pred             chhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEcc
Confidence             1 2478899999999999999732     1    245899999999999999999999999999999999999999999


Q ss_pred             cccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          140 TLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       140 ~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +++++|+.++   |.+.+|++|+.++.++|+|++|.|+++|+          .||+|.
T Consensus       192 ~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~----------~gt~i~  239 (239)
T cd04261         192 EISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE----------PGTLIT  239 (239)
T ss_pred             ccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC----------CCcEeC
Confidence            9999988864   77889999999999999999999999985          599884

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and

>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

Probab=99.97  E-value=1.2e-30  Score=215.93  Aligned_cols=183  Identities=26%  Similarity=0.351  Sum_probs=149.3

Q ss_pred             ceEEEEEc-CChhhhhhhhhhcC---CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccccccc-ch------
Q 028621            2 FQVAIVVG-GGNIFRGASAAGNS---GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EP------   70 (206)
Q Consensus         2 ~~~iiVhG-GG~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~-~~------   70 (206)
                      ++++|||| ||..++......+.   ..+...++.+.+.++.+|+.++...|+++|++++++++.+...+. +.      
T Consensus        32 ~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~  111 (239)
T cd04246          32 YQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARI  111 (239)
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceee
Confidence            46778777 67776665422211   124556677777889999999899999999999999998864332 11      


Q ss_pred             -h-HHHHHHHHhhCCCEEEEeCCCC---C------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           71 -Y-IRRRAVRHLEKGRVVIFAAGTG---N------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        71 -~-~~~~l~~~l~~g~ipvi~g~~g---~------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                       . ..+.++.++++|.|||++|+.+   +      .++++|++|+.+|.+|+|++|+++|||||||++||+.+|++++++
T Consensus       112 ~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~  191 (239)
T cd04246         112 IDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLD  191 (239)
T ss_pred             chhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcc
Confidence             1 2478899999999999999732   1      235899999999999999999999999999999999999999999


Q ss_pred             cccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          140 TLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       140 ~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +++++|+.++   |.+.+|++|+.++.++|+|++|.|+++|+          .||+|+
T Consensus       192 ~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~----------~gt~i~  239 (239)
T cd04246         192 VISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN----------PGTLIT  239 (239)
T ss_pred             cCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC----------CCcEeC
Confidence            9999988764   77789999999999999999999999885          599884

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati

>PRK12314 gamma-glutamyl kinase; Provisional

Probab=99.97  E-value=2.2e-30  Score=217.45  Aligned_cols=192  Identities=20%  Similarity=0.276  Sum_probs=148.9

Q ss_pred             ceEEE-EEcCChhhhhhhhhhcCCCCh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCceE--ecccccccccchh--HHH
Q 028621            2 FQVAI-VVGGGNIFRGASAAGNSGLDR--SSADYIGMLATVMNAIFLQATMESIGIPTRV--QTAFRMSEVAEPY--IRR   74 (206)
Q Consensus         2 ~~~ii-VhGGG~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~--l~~~~~~~v~~~~--~~~   74 (206)
                      +++|| +||++++  ++..++.+..+.  ...+.+...++.+...+++.+|+++|+++..  ++..++. -.+.+  ..+
T Consensus        48 ~~vvlV~Sga~~~--g~~~l~~~~~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~~q~llT~~~~~-~~~~~~~~~~  124 (266)
T PRK12314         48 KEVILVSSGAIGA--GLTKLKLDKRPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVVAQILLTRDDFD-SPKSRANVKN  124 (266)
T ss_pred             CeEEEEeeCcccc--cceeeccccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeEEEEEEeccccc-chHHHHHHHH
Confidence            45666 5999999  776554444332  2346667788888999999999999998743  2222221 00011  247


Q ss_pred             HHHHHhhCCCEEEEeCC-----CC--CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--HH
Q 028621           75 RAVRHLEKGRVVIFAAG-----TG--NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QE  145 (206)
Q Consensus        75 ~l~~~l~~g~ipvi~g~-----~g--~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~e  145 (206)
                      .++.+|+.|.|||++++     .+  ..+++||++|+++|.+++|++|+|+|||||||++||+.+|++++|+++++  .+
T Consensus       125 ~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~  204 (266)
T PRK12314        125 TFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEE  204 (266)
T ss_pred             HHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHH
Confidence            88899999999999963     12  23899999999999999999999999999999999999999999999875  33


Q ss_pred             HhcC--------CcCc--chHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          146 VTSK--------DLSV--MDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       146 ~~~~--------g~~~--~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      ..+.        ++++  .|+++++.|.++|++++|+||++|++|.++++|+..||+|.+.
T Consensus       205 ~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  265 (266)
T PRK12314        205 ILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAPK  265 (266)
T ss_pred             HHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEccC
Confidence            3221        2334  4999999999999999999999999999999999999999764

>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]

Probab=99.97  E-value=2e-30  Score=214.78  Aligned_cols=187  Identities=21%  Similarity=0.276  Sum_probs=153.1

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEeccccc-----
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRM-----   64 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~-----   64 (206)
                      +++|||||||++++..  .+++++.+.+           ++.+.+ ++..+|..+++. |+++|.+++++++.|.     
T Consensus        35 ~~~VvVHGggp~I~~~--l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iva~-l~~~g~~avGlsg~Dg~li~A  111 (265)
T COG0548          35 IRPVVVHGGGPQIDEM--LAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIVAR-LSKHGGQAVGLSGVDGNLVTA  111 (265)
T ss_pred             CcEEEEeCCchHHHHH--HHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHHHH-HHHhCCcceeeeecCCCEEEE
Confidence            4679999999999985  4667777655           344444 566999999886 7789999999999883     


Q ss_pred             -----------ccccchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 028621           65 -----------SEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYD  126 (206)
Q Consensus        65 -----------~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~  126 (206)
                                 ++++++.  ..+.++.+++++.|||++|.    +|++ ++++|+.|+.+|.+|+|++|+++|||+||++
T Consensus       112 ~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~  191 (265)
T COG0548         112 KKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLD  191 (265)
T ss_pred             EEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence                       2333221  24789999999999999996    4555 4999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccHHHHhcC---C--cC--cchHHHHHHHHhCCCc-EEEEcCCCCchHH-HHhcCCCcceEEec
Q 028621          127 DNPRRNPNARLLDTLTYQEVTSK---D--LS--VMDMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGG  195 (206)
Q Consensus       127 ~dP~~~~~a~~i~~i~~~e~~~~---g--~~--~~k~~a~~~a~~~gi~-v~I~~g~~~~~l~-~~l~g~~~GT~i~~  195 (206)
                      ++|+  +  ++|++++.+|+.++   +  .+  ..|+++|..|++.|++ ++|+||+.|+.+. ++|+++++||+|.+
T Consensus       192 ~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~~  265 (265)
T COG0548         192 DKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIVR  265 (265)
T ss_pred             CCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHhcCCCcceEecC
Confidence            8762  2  68999999888765   2  23  4499999999999995 9999999999965 89999999999863

>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

Probab=99.97  E-value=3.5e-30  Score=211.72  Aligned_cols=175  Identities=26%  Similarity=0.312  Sum_probs=148.0

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hH
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YI   72 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~   72 (206)
                      ++++|||+|+..++.....  +.       .+..+++.+|+.+++.+|+++|+++..+++.++..+...         ..
T Consensus        31 ~~vvvV~Sg~~~~t~~l~~--~~-------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~  101 (227)
T cd04234          31 NRVVVVVSAMGGVTDLLIE--LA-------LLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEIS  101 (227)
T ss_pred             CCEEEEEcCCCcccHHHHH--HH-------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhhHHHHH
Confidence            5799999888775553311  11       566789999999999999999999999999987655332         12


Q ss_pred             HHHHHHHhhC-CCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCccccccc
Q 028621           73 RRRAVRHLEK-GRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT  142 (206)
Q Consensus        73 ~~~l~~~l~~-g~ipvi~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~  142 (206)
                      .+.+++++++ |.|||++|+.+     .    .+++||++|+.+|.+|+|+++++||||||||++||+.+|++++|++++
T Consensus       102 ~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~  181 (227)
T cd04234         102 YERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEIS  181 (227)
T ss_pred             HHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCC
Confidence            5788889999 99999999632     2    135899999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          143 YQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       143 ~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      ++|+.++   |.++||++|++++.++++|++|.|+++|+         ..||+|.
T Consensus       182 ~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~  227 (227)
T cd04234         182 YDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------APGTLIT  227 (227)
T ss_pred             HHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence            9998765   77889999999999999999999999987         4699884

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd

>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

Probab=99.97  E-value=5.9e-30  Score=213.29  Aligned_cols=187  Identities=26%  Similarity=0.397  Sum_probs=147.0

Q ss_pred             ceEEEEEc-CChhhhhhhhhhcCCCChh-----hhhHHHHHHHHHHHHHHHHHHHhCCCCceE--ecccccccccchh--
Q 028621            2 FQVAIVVG-GGNIFRGASAAGNSGLDRS-----SADYIGMLATVMNAIFLQATMESIGIPTRV--QTAFRMSEVAEPY--   71 (206)
Q Consensus         2 ~~~iiVhG-GG~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~--l~~~~~~~v~~~~--   71 (206)
                      +++||||| +|++  ++.   ++++...     ..+.+...++.....+++.+|+++|+++..  ++..++..- ..+  
T Consensus        38 ~~viiV~sg~~~~--g~~---~~~~~~~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~q~l~t~~~~~~~-~~~~~  111 (251)
T cd04242          38 KEVILVSSGAVAA--GRQ---RLGLEKRPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKVAQILLTRDDFEDR-KRYLN  111 (251)
T ss_pred             CeEEEEecCchhh--Chh---hhccCcCCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeEEEEEEehhHhcch-HHHHH
Confidence            47899985 6676  543   2333322     235556678888888889999999999864  322222110 011  


Q ss_pred             HHHHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCccccccc--HH
Q 028621           72 IRRRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT--YQ  144 (206)
Q Consensus        72 ~~~~l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~--~~  144 (206)
                      ..+.++.+|++|.|||+++++     +..++++|++|+++|.+|+|++|+|+|||||||++||+.+|++++|++++  ++
T Consensus       112 ~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~  191 (251)
T cd04242         112 ARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITD  191 (251)
T ss_pred             HHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChH
Confidence            247788899999999999731     13578999999999999999999999999999999999999999999999  77


Q ss_pred             HHhcC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          145 EVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       145 e~~~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      |+.++        ++++|  |++++..+.++|++++|+|+++|++|.++|+|+..||+|.
T Consensus       192 e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  251 (251)
T cd04242         192 EIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLFL  251 (251)
T ss_pred             HHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEeC
Confidence            76543        35556  7899999999999999999999999999999999999984

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=99.97  E-value=1.9e-30  Score=230.72  Aligned_cols=165  Identities=28%  Similarity=0.364  Sum_probs=147.7

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh---------HHHH-HHHHhhCCCEEEEeCCCCC-
Q 028621           26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY---------IRRR-AVRHLEKGRVVIFAAGTGN-   94 (206)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~---------~~~~-l~~~l~~g~ipvi~g~~g~-   94 (206)
                      +++..|.+.+.||++|+.+++.+|++.|+++..+++++.+++++..         ..+. +..+++.+.+||++||.|. 
T Consensus       107 ~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~  186 (447)
T COG0527         107 SPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEGKVPVVAGFQGIN  186 (447)
T ss_pred             CHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhcCCcEEEecCceeec
Confidence            5567899999999999999999999999999999999988776531         1344 7778999999999999541 


Q ss_pred             --------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621           95 --------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ  163 (206)
Q Consensus        95 --------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~  163 (206)
                              ++++||+.|+.||++|+||++.+||||||||++|||.+|+|++|+++||+|+.++   |++++|+++..++.
T Consensus       187 ~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~  266 (447)
T COG0527         187 EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAM  266 (447)
T ss_pred             CCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHHHHHHHH
Confidence                    4699999999999999999999999999999999999999999999999999875   89999999999999


Q ss_pred             hCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCC
Q 028621          164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS  199 (206)
Q Consensus       164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~  199 (206)
                      +++||++|.|.++|+         ..||+|..+...
T Consensus       267 ~~~Ip~~i~~t~~p~---------~~GTlI~~~~~~  293 (447)
T COG0527         267 RSGIPLRIKNTFNPD---------APGTLITAETES  293 (447)
T ss_pred             hcCCcEEEEecCCCC---------CCceEEecCCcC
Confidence            999999999999997         479999987543

>CHL00202 argB acetylglutamate kinase; Provisional

Probab=99.97  E-value=7.2e-30  Score=216.22  Aligned_cols=187  Identities=17%  Similarity=0.200  Sum_probs=149.0

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEecccccccc--
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV--   67 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v--   67 (206)
                      .++|||||||+|  .|.+++++++++++           ++.+.+ ++.++|..+++. |+++|++++++++.+...+  
T Consensus        56 ~~~VlVHGgg~~--i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~~-L~~~Gv~av~l~~~d~~~i~a  132 (284)
T CHL00202         56 LKIVVVHGGGPE--INFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLVGS-INANGGKAVGLCGKDANLIVA  132 (284)
T ss_pred             CcEEEEeCCcHH--HHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHHHH-HHhCCCCeeeeeeccCCEEEE
Confidence            478999999999  55577888887644           222322 567899999886 7789999999999875432  


Q ss_pred             -----------cch--hHHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 028621           68 -----------AEP--YIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP  129 (206)
Q Consensus        68 -----------~~~--~~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP  129 (206)
                                 ++.  ...+.++.+|++|.|||++|.    .|.. .+++|++|+.+|.+|+|++|+|+|||||||+++.
T Consensus       133 ~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~  212 (284)
T CHL00202        133 RASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADIN  212 (284)
T ss_pred             EeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCC
Confidence                       111  125889999999999999985    2333 4799999999999999999999999999998531


Q ss_pred             CCCCCCcccccccHHHHhcC---C--cCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEe
Q 028621          130 RRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIG  194 (206)
Q Consensus       130 ~~~~~a~~i~~i~~~e~~~~---g--~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~  194 (206)
                        +| .++|++++++|+.++   |  .++|  |+++|..+.++|++ ++|++|++|+.+ .++|++++.||+|.
T Consensus       213 --d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~  283 (284)
T CHL00202        213 --DP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV  283 (284)
T ss_pred             --CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence              22 378999999887654   2  3445  99999999999996 899999999975 79999999999985

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=99.97  E-value=1.2e-29  Score=224.32  Aligned_cols=186  Identities=21%  Similarity=0.275  Sum_probs=156.2

Q ss_pred             ceEEEEEcCChhhhhhhh-hhc----CCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch------
Q 028621            2 FQVAIVVGGGNIFRGASA-AGN----SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP------   70 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~-~~~----~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~------   70 (206)
                      +++++|||||..++.... ..+    ...++...+.+.++++++|+.+++.+|+++|+++.++++.+.+.++..      
T Consensus        33 ~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~  112 (401)
T TIGR00656        33 HKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAK  112 (401)
T ss_pred             CCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceE
Confidence            579999999988777542 111    234555678888999999999999999999999999998876544211      


Q ss_pred             ----hHHHHHHHHhhCCCEEEEeCCC-----CC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcc
Q 028621           71 ----YIRRRAVRHLEKGRVVIFAAGT-----GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL  137 (206)
Q Consensus        71 ----~~~~~l~~~l~~g~ipvi~g~~-----g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~  137 (206)
                          ...+.++.+++.|.|||++|+.     |.    .+++||++|+.+|.+|+|+++++||||||||++||+.+|++++
T Consensus       113 ~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~  192 (401)
T TIGR00656       113 IDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKR  192 (401)
T ss_pred             eeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEE
Confidence                1237889999999999999973     22    2468999999999999999999999999999999999999999


Q ss_pred             cccccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          138 LDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       138 i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      +++++++|+.++   |..++|++|+.+|.++++|++|.|+++|+          .||+|.++.
T Consensus       193 i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----------~gT~I~~~~  245 (401)
T TIGR00656       193 IDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----------EGTLITNSM  245 (401)
T ss_pred             CCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC----------CCeEEEeCc
Confidence            999999999875   78889999999999999999999999985          499998753

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

Probab=99.97  E-value=1.3e-29  Score=210.32  Aligned_cols=161  Identities=29%  Similarity=0.394  Sum_probs=136.6

Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch--------h-HHHHHHHHhhCCCEEEEeCC---
Q 028621           24 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--------Y-IRRRAVRHLEKGRVVIFAAG---   91 (206)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--------~-~~~~l~~~l~~g~ipvi~g~---   91 (206)
                      .+++..++.+.+.++.++..++.++|+++|+++..+++.+.+.+...        . ..+.++.+++.|.|||++|+   
T Consensus        63 ~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~  142 (244)
T cd04260          63 DISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGV  142 (244)
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCccc
Confidence            34555677787889999998999999999999999998876554211        1 24678899999999999997   


Q ss_pred             C--CCC----CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHH
Q 028621           92 T--GNP----FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLC  162 (206)
Q Consensus        92 ~--g~~----~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a  162 (206)
                      +  |..    ++++|++|+.+|.+|+|+++++||||||||++||+.+|++++|++++++|+.++   |...+|+.|++++
T Consensus       143 ~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~  222 (244)
T cd04260         143 TEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIA  222 (244)
T ss_pred             CCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHH
Confidence            2  221    358999999999999999999999999999999999999999999999988875   6778899999999


Q ss_pred             HhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          163 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       163 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      .+.++|++|.|+++|.          .||+|+
T Consensus       223 ~~~~i~v~I~~~~~~~----------~gt~i~  244 (244)
T cd04260         223 MQANIPIRIRSTMSEN----------PGTLIT  244 (244)
T ss_pred             HHcCCeEEEecCCCCC----------CCCEeC
Confidence            9999999999999874          599884

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

Probab=99.97  E-value=9.9e-30  Score=205.68  Aligned_cols=168  Identities=24%  Similarity=0.321  Sum_probs=140.2

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      .+++||.|||+|+|.++ .++++|+++...|+|++++|++|+.+++..+...+++                ..+.+..++
T Consensus        25 ~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~~~----------------~~~~~~~~~   88 (203)
T cd04240          25 GGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLVAR----------------TLAELTDVL   88 (203)
T ss_pred             CCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCccccC----------------CHHHHHHHH
Confidence            57999999999988776 4467999999999999999999999977533221111                124677889


Q ss_pred             hCCCEEEEeCC--------CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCc
Q 028621           81 EKGRVVIFAAG--------TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL  151 (206)
Q Consensus        81 ~~g~ipvi~g~--------~g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~  151 (206)
                      ..|.+||+.|.        .+ .+++++|++|+++|..++|++|+++|||||||++|      ++++++++..|+..  .
T Consensus        89 ~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~~~--~  160 (203)
T cd04240          89 ERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAELLG--E  160 (203)
T ss_pred             HCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHhCC--C
Confidence            99999999985        11 35699999999999999999999999999999864      78999999988753  5


Q ss_pred             CcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCC-CcceEE
Q 028621          152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLI  193 (206)
Q Consensus       152 ~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~-~~GT~i  193 (206)
                      +.++..+++.+.++|++++|+|+++|++|.+++.|+ ..||.|
T Consensus       161 ~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I  203 (203)
T cd04240         161 TSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI  203 (203)
T ss_pred             CeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence            566776778889999999999999999999999998 789975

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.

>PRK13402 gamma-glutamyl kinase; Provisional

Probab=99.97  E-value=3.3e-29  Score=218.28  Aligned_cols=194  Identities=21%  Similarity=0.266  Sum_probs=151.2

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh----hhhhHHHHHHHHHHHHHHHHHHHhCCCCceEe--cccccccccch-h--H
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR----SSADYIGMLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEP-Y--I   72 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l--~~~~~~~v~~~-~--~   72 (206)
                      +++|||||||..+ +.   .++++..    ...+.+...++......+..+|+++|+++..+  +..++  ..+. |  +
T Consensus        44 ~~vvlVsSGava~-G~---~~l~~~~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~aqvLlT~~d~--~~~~~y~n~  117 (368)
T PRK13402         44 HQVVLVSSGAVAA-GY---HKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAAQLLLTHGDL--RDRERYINI  117 (368)
T ss_pred             CEEEEEeCChhhc-Cc---cccCCCCCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEEEecchh--hhHHHHHHH
Confidence            6799999999554 32   2233211    12345556666666666777899999999754  43332  1111 2  2


Q ss_pred             HHHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--HH
Q 028621           73 RRRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QE  145 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~e  145 (206)
                      .+.+..+|+.|.|||+++++     +..+++||++|+++|.+++||.|+++|||||||++||+.+|++++|+++++  +|
T Consensus       118 ~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e  197 (368)
T PRK13402        118 RNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAE  197 (368)
T ss_pred             HHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHH
Confidence            57889999999999999742     356799999999999999999999999999999999999999999999986  45


Q ss_pred             Hhc--------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCcc
Q 028621          146 VTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV  201 (206)
Q Consensus       146 ~~~--------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~  201 (206)
                      +..        .|+++|  |++|+..|.++|++++|+|+++|+.|.+++.|+..||+|.+.....+
T Consensus       198 ~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~  263 (368)
T PRK13402        198 IYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTYFTPEEKPMQ  263 (368)
T ss_pred             HHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcCCCCceEEecCCCCcc
Confidence            443        245566  88999999999999999999999999999999999999998655443

>PLN02512 acetylglutamate kinase

Probab=99.97  E-value=2.9e-29  Score=214.77  Aligned_cols=188  Identities=19%  Similarity=0.229  Sum_probs=148.4

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhh-----------hHHH-HHHHHHHHHHHHHHHHhCCCCceEecccccc----
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA-----------DYIG-MLATVMNAIFLQATMESIGIPTRVQTAFRMS----   65 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~-----------~~~~-~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~----   65 (206)
                      .++|||||||+|++  .+.+++++++++.           +.+. .++.++|..+++. |+++|++++++++.+..    
T Consensus        80 ~~iVlVHGgG~~i~--~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~-L~~~Gv~av~l~g~d~~~i~a  156 (309)
T PLN02512         80 LRPVLVHGGGPEIN--SWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSL-INKAGGTAVGLSGKDGRLLRA  156 (309)
T ss_pred             CCEEEEECCcHHHH--HHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHH-HHHcCCCeEEeehhhCCEEEE
Confidence            47899999999954  4567777775432           2222 2456899999875 77899999999988642    


Q ss_pred             ----------cccchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 028621           66 ----------EVAEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN  128 (206)
Q Consensus        66 ----------~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~d  128 (206)
                                ++++..  ..+.++.+|++|.|||++|+    .|. ..+++|++|+++|.+|+|++|+|+|||||||+++
T Consensus       157 ~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~  236 (309)
T PLN02512        157 RPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDK  236 (309)
T ss_pred             EEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCC
Confidence                      222211  25889999999999999996    232 3479999999999999999999999999999876


Q ss_pred             CCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchHH-HHhcCCCcceEEec
Q 028621          129 PRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGG  195 (206)
Q Consensus       129 P~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l~-~~l~g~~~GT~i~~  195 (206)
                      |   +++++|++++++|+.++     ..++|  |++++..+.+.|++ ++|++++.|+.+. ++|+++..||+|.+
T Consensus       237 ~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~  309 (309)
T PLN02512        237 D---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG  309 (309)
T ss_pred             C---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence            4   24789999999887654     23445  99999999999995 9999999999875 78999989999974

>PRK08841 aspartate kinase; Validated

Probab=99.97  E-value=3e-29  Score=220.73  Aligned_cols=185  Identities=25%  Similarity=0.312  Sum_probs=152.1

Q ss_pred             ceEEEEEcCCh-hhhhhh-hhhcCC-C-ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-----h-
Q 028621            2 FQVAIVVGGGN-IFRGAS-AAGNSG-L-DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-----Y-   71 (206)
Q Consensus         2 ~~~iiVhGGG~-~~~~~~-~~~~~~-l-~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-----~-   71 (206)
                      +++++||+|++ ..+... .+++.. . ++..++.+.+.|+.+++.+++.+|++.|+++.++++++.+.+.+.     . 
T Consensus        34 ~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i  113 (392)
T PRK08841         34 NQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATI  113 (392)
T ss_pred             CCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCcee
Confidence            46899998887 433322 222222 1 344568888899999999999999999999999999987544322     1 


Q ss_pred             --H-HHHHHHHhhCCCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           72 --I-RRRAVRHLEKGRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        72 --~-~~~l~~~l~~g~ipvi~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                        + .+.+.++++.|.+||++||.|     .    .+++||++|+.+|.+|+|+++++||||||||++||+.+|++++++
T Consensus       114 ~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~  193 (392)
T PRK08841        114 KHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLD  193 (392)
T ss_pred             chhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcc
Confidence              2 477888999999999999743     1    246899999999999999999999999999999999999999999


Q ss_pred             cccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          140 TLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       140 ~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      +++++|+.++   |.+++|++|+.+|.++++|++|.|++++.          .||+|..+
T Consensus       194 ~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~~----------~GT~I~~~  243 (392)
T PRK08841        194 VIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVG----------EGTLIKGE  243 (392)
T ss_pred             cccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCCC----------CCeEEEec
Confidence            9999987764   78899999999999999999999998763          59999654

>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC)

Probab=99.97  E-value=1.1e-29  Score=212.31  Aligned_cols=180  Identities=22%  Similarity=0.279  Sum_probs=144.7

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhh----------------hHHHHHHHHHHHHHHHHHHHhCCCCceEecccccc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA----------------DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS   65 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~----------------~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~   65 (206)
                      .++|||||||+|  .|.+++++++++++.                +.+.+..+++|..+++ .|+++|++++++++.+..
T Consensus        25 ~~~VlVHGgg~~--i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~~ln~~iv~-~L~~~Gi~a~~l~~~~~~  101 (257)
T cd04251          25 ERLIVVHGGGNY--VNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMGLINKKIVA-RLHSLGVKAVGLTGLDGR  101 (257)
T ss_pred             CCEEEECCCHHH--HHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceecccccCC
Confidence            479999999999  555677788765432                3444445899999988 588899999999998752


Q ss_pred             cc------------------------cch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcE
Q 028621           66 EV------------------------AEP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEV  114 (206)
Q Consensus        66 ~v------------------------~~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~  114 (206)
                      .+                        ++.  ...+.++.+|++|.|||++|+    .|. .++++|++|+.+|.+|+|++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~  181 (257)
T cd04251         102 LLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAER  181 (257)
T ss_pred             EEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCE
Confidence            21                        111  125889999999999999986    233 35899999999999999999


Q ss_pred             EEEeeccCccccCCCCCCCCCcccccccHHHHhcC-----CcCcchHHHHHHHHhCCC-cEEEEcCCCCchHHHHhcCCC
Q 028621          115 VLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGER  188 (206)
Q Consensus       115 li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~k~~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~g~~  188 (206)
                      |+|+|||||||++       ++++++++++|+.++     |.+..|++++..+.++|+ +++|+++++|++|.+++.|+ 
T Consensus       182 li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~~l~g~-  253 (257)
T cd04251         182 LILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADSPISSALNGG-  253 (257)
T ss_pred             EEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCccHHHHHHcCC-
Confidence            9999999999973       579999999887654     334449999999999999 59999999999999999874 


Q ss_pred             cceEE
Q 028621          189 VGTLI  193 (206)
Q Consensus       189 ~GT~i  193 (206)
                       ||.|
T Consensus       254 -gT~i  257 (257)
T cd04251         254 -GTVI  257 (257)
T ss_pred             -CcCC
Confidence             9875

This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).

>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

Probab=99.97  E-value=3.6e-29  Score=211.65  Aligned_cols=160  Identities=23%  Similarity=0.281  Sum_probs=142.2

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-hh--------HHHHHHHHhhCCCEEEEeCCCCC--
Q 028621           26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-PY--------IRRRAVRHLEKGRVVIFAAGTGN--   94 (206)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~~--------~~~~l~~~l~~g~ipvi~g~~g~--   94 (206)
                      ++...|.+.++||++|+.+++.+|++.|+++..+++++++.+.+ .+        ..+.+.+.++.+.|||++||.|.  
T Consensus       108 ~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~  187 (288)
T cd04245         108 PDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSK  187 (288)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCC
Confidence            45556888899999999999999999999999999999855432 21        24677788888999999998653  


Q ss_pred             -------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHHh
Q 028621           95 -------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE  164 (206)
Q Consensus        95 -------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~  164 (206)
                             ++++||+.|+.+|.+|+|+.+.+||||||||++||+.+|+++.++++||+|+.++   |..++|+.|..++.+
T Consensus       188 ~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~  267 (288)
T cd04245         188 NGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIE  267 (288)
T ss_pred             CCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHH
Confidence                   4689999999999999999999999999999999999999999999999999975   888999999999999


Q ss_pred             CCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          165 NNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       165 ~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +++|++|.|.++|+         ..||+|.
T Consensus       268 ~~Ipi~v~n~~~p~---------~~GT~I~  288 (288)
T cd04245         268 AGIPINIKNTNHPE---------APGTLIV  288 (288)
T ss_pred             CCCcEEEeeCCCCC---------CCCceeC
Confidence            99999999999997         5799984

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=99.96  E-value=2.1e-28  Score=214.19  Aligned_cols=195  Identities=25%  Similarity=0.356  Sum_probs=148.4

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----hhHHHHHHHHHHHHHHHHHHHhCCCCceEe--cccccccccchhH--
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----ADYIGMLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEPYI--   72 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l--~~~~~~~v~~~~~--   72 (206)
                      +++|||||| ++  ++-. .++++....     .+.+...++.....++..+|+++|+++..+  +..++.. ...++  
T Consensus        47 ~~vViV~sG-ai--~~g~-~~l~l~~~~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~qil~t~~d~~~-~~~~ln~  121 (372)
T PRK05429         47 HEVVLVSSG-AV--AAGR-ERLGLPERPKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQILLTRDDLED-RERYLNA  121 (372)
T ss_pred             CeEEEEccc-Hh--hhhH-hhcCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEEEEeehhHhhh-hhHhhhH
Confidence            579999976 55  3321 235554432     233444555666667777899999998763  4333311 01122  


Q ss_pred             HHHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--HH
Q 028621           73 RRRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QE  145 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~e  145 (206)
                      .+.++.++++|.|||+++++     ...+++||++|+++|.+++|++|+|+|||||||++||+.+|++++|+++++  +|
T Consensus       122 ~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e  201 (372)
T PRK05429        122 RNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDE  201 (372)
T ss_pred             HHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHH
Confidence            36788899999999998642     235799999999999999999999999999999999999999999999987  44


Q ss_pred             HhcC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCcc
Q 028621          146 VTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV  201 (206)
Q Consensus       146 ~~~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~  201 (206)
                      +.++        ++++|  |++|+..+.++|++++|+|+++|++|.++++|+..||+|.+.....+
T Consensus       202 ~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~  267 (372)
T PRK05429        202 LEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQEKPLS  267 (372)
T ss_pred             HHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCCccch
Confidence            4432        34555  88999999999999999999999999999999999999998765543

>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

Probab=99.96  E-value=7.7e-29  Score=211.01  Aligned_cols=161  Identities=28%  Similarity=0.390  Sum_probs=139.5

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-------------hHHHHHHHHhhCCCEEEEeCC
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-------------YIRRRAVRHLEKGRVVIFAAG   91 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-------------~~~~~l~~~l~~g~ipvi~g~   91 (206)
                      +++...|.+.++||++|+.+++.+|+++|+++.++++++++.+...             .+...+..+++.+.|||++||
T Consensus       113 ~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gf  192 (298)
T cd04244         113 LTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGF  192 (298)
T ss_pred             CCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCc
Confidence            3455668888999999999999999999999999999987543211             123455667788999999997


Q ss_pred             CC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHH
Q 028621           92 TG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAI  159 (206)
Q Consensus        92 ~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~  159 (206)
                      .|     .    .+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++   |.+++|++|+
T Consensus       193 ig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai  272 (298)
T cd04244         193 IGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTV  272 (298)
T ss_pred             cccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHH
Confidence            33     2    3579999999999999999999999999999999999999999999999998875   8889999999


Q ss_pred             HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      .+|.+++||++|.|+++|+         ..||+|.
T Consensus       273 ~~a~~~~Ipi~i~n~~~p~---------~~GT~I~  298 (298)
T cd04244         273 EPAMEKGIPVRVKNTFNPE---------APGTLIT  298 (298)
T ss_pred             HHHHHcCCcEEEeeCCCCC---------CCCCEeC
Confidence            9999999999999999997         5799984

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.

>PRK08210 aspartate kinase I; Reviewed

Probab=99.96  E-value=2.4e-28  Score=216.21  Aligned_cols=163  Identities=26%  Similarity=0.340  Sum_probs=139.6

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hHHHHHHHHhhCCCEEEEeCCC---
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YIRRRAVRHLEKGRVVIFAAGT---   92 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~~~~l~~~l~~g~ipvi~g~~---   92 (206)
                      .++...+.+...++.++..+++++|+++|+++.++++.+.+.++..         ...+.++.+++.+.|||++|+.   
T Consensus        66 ~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~  145 (403)
T PRK08210         66 ISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVT  145 (403)
T ss_pred             CChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecC
Confidence            4555678888899999999999999999999999999886444211         1247888899999999999972   


Q ss_pred             --CC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621           93 --GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ  163 (206)
Q Consensus        93 --g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~  163 (206)
                        |.    .++++|++|+.+|.+|+|++++|||||||||++||+.+|++++|++++++|+.++   |..++|++|+.+|.
T Consensus       146 ~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~  225 (403)
T PRK08210        146 ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAM  225 (403)
T ss_pred             CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHH
Confidence              22    2358999999999999999999999999999999999999999999999998875   78889999999999


Q ss_pred             hCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      ++++|++|.|++++.          .||+|.++.
T Consensus       226 ~~~i~i~i~~~~~~~----------~gT~I~~~~  249 (403)
T PRK08210        226 QANIPLRIRSTYSDS----------PGTLITSLG  249 (403)
T ss_pred             HCCCeEEEEecCCCc----------CCcEEEecC
Confidence            999999999998753          499998753

>PTZ00489 glutamate 5-kinase; Provisional

Probab=99.96  E-value=6.5e-28  Score=201.81  Aligned_cols=190  Identities=15%  Similarity=0.227  Sum_probs=140.3

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHH---HHH-HHHHHHHHHHHHhCCCCceEecccccccccchh---HHH
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGM---LAT-VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY---IRR   74 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~---~~~-~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~---~~~   74 (206)
                      +++||||+|+ ++.++.   ++++.......-..   .|. +++..... .|.++|+.+..+.......-..+.   ..+
T Consensus        45 ~~vilVssGa-va~g~~---~~~~~~~~~~~~qa~aaiGq~~L~~~y~~-~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~  119 (264)
T PTZ00489         45 YEVILVTSGA-VAAGYT---KKEMDKSYVPNKQALASMGQPLLMHMYYT-ELQKHGILCAQMLLAAYDLDSRKRTINAHN  119 (264)
T ss_pred             CeEEEEecCh-HhcChh---hcCCCccccHHHHHHHHhCHHHHHHHHHH-HHHhCCCeEEEeeeeccccccchhhHHHHH
Confidence            5799999666 866653   24544433222222   222 56665544 577899988753322111112221   357


Q ss_pred             HHHHHhhCCCEEEEeCCCC-----CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcc---cccccHHHH
Q 028621           75 RAVRHLEKGRVVIFAAGTG-----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL---LDTLTYQEV  146 (206)
Q Consensus        75 ~l~~~l~~g~ipvi~g~~g-----~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~---i~~i~~~e~  146 (206)
                      .++.+|++|.|||+++++-     ..+++||.+|+.+|..++||+|+|+|||||||++||+.+|++++   +++++.+++
T Consensus       120 ~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~  199 (264)
T PTZ00489        120 TIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDL  199 (264)
T ss_pred             HHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHH
Confidence            8899999999999998631     23569999999999999999999999999999999999999987   778887765


Q ss_pred             hc-------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCC--CcceEEecC
Q 028621          147 TS-------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE--RVGTLIGGT  196 (206)
Q Consensus       147 ~~-------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~--~~GT~i~~~  196 (206)
                      ..       .++++|  |++||..+.++|++++|++|++|+.|.+++.|+  ..||+|.+.
T Consensus       200 ~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~  260 (264)
T PTZ00489        200 VAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPR  260 (264)
T ss_pred             HHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeec
Confidence            31       134455  999999999999999999999999999999875  479999874

>PRK00942 acetylglutamate kinase; Provisional

Probab=99.96  E-value=1.8e-28  Score=207.58  Aligned_cols=186  Identities=20%  Similarity=0.226  Sum_probs=146.4

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHH-HHHHHHHHHHHHHHHHhCCCCceEecccccccccc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIG-MLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE   69 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~-~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~   69 (206)
                      .++|||||||++++.  ..+++++++..           ++... .++.++|..+++ +|+++|+++.++++.+.+++..
T Consensus        56 ~~vVlVhGgg~~~~~--~~~~~g~~~~~~~g~~~t~~~~l~~~~~a~~G~l~~~i~~-~L~~~Gv~a~~l~~~~~~~~ta  132 (283)
T PRK00942         56 INPVVVHGGGPQIDE--LLKKLGIESEFVNGLRVTDAETMEVVEMVLAGKVNKELVS-LINKHGGKAVGLSGKDGGLITA  132 (283)
T ss_pred             CCEEEEeCChHHHHH--HHHHCCCCcEeeCCEecCCHHHHHHHHHHHcCchHHHHHH-HHHhCCCCccceeeccCCEEEE
Confidence            368999999999665  44556655432           12221 222489988885 5888999999999987544421


Q ss_pred             --------------h--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 028621           70 --------------P--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN  128 (206)
Q Consensus        70 --------------~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~d  128 (206)
                                    .  ...+.++.+|++|.|||+++.    .|. .++++|++|+++|.+|+|++|+|+|||||||++ 
T Consensus       133 ~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~-  211 (283)
T PRK00942        133 KKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD-  211 (283)
T ss_pred             EECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC-
Confidence                          1  125789999999999999985    232 368999999999999999999999999999986 


Q ss_pred             CCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCC-cEEEEcCCCCch-HHHHhcCCCcceEEecC
Q 028621          129 PRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNI-PVVVFNLNQPGN-IAKAIQGERVGTLIGGT  196 (206)
Q Consensus       129 P~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi-~v~I~~g~~~~~-l~~~l~g~~~GT~i~~~  196 (206)
                           ++++|++++++|+.++     ..++|  |+++|..+.++|+ +++|+|+++|++ |.++|+++++||+|.++
T Consensus       212 -----~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~  283 (283)
T PRK00942        212 -----KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD  283 (283)
T ss_pred             -----CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence                 3689999999887654     13444  9999999999998 599999999999 78999999999999874

>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis

Probab=99.96  E-value=1.5e-28  Score=207.74  Aligned_cols=186  Identities=20%  Similarity=0.244  Sum_probs=145.7

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEeccccccccc-
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-   68 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~-   68 (206)
                      .++|||||||++++.  .+++++++..+           ++.+.+ ++.++|..+++ .|+++|++++++++.+.+.+. 
T Consensus        47 ~~~ViVhG~g~~~~~--~l~~~g~~~~~~~g~r~t~~~~~~~~~~~~~g~ln~~l~~-~L~~~Gv~a~~l~~~~~~~~~~  123 (279)
T cd04250          47 INPVVVHGGGPEINE--MLKKLGIESEFVNGLRVTDEETMEIVEMVLVGKVNKEIVS-LINRAGGKAVGLSGKDGNLIKA  123 (279)
T ss_pred             CCEEEEcCCcHHHHH--HHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHH-HHHHcCCCcceeecCCCCEEEE
Confidence            368999999999655  55667766432           122222 22489999855 588899999999998753331 


Q ss_pred             ------------------ch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 028621           69 ------------------EP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDG  123 (206)
Q Consensus        69 ------------------~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~G  123 (206)
                                        +.  ...+.++.+|++|.|||++|.    .|. ..+++|.+|+++|.+|+|++|+|+|||||
T Consensus       124 ~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~G  203 (279)
T cd04250         124 KKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAG  203 (279)
T ss_pred             EECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcc
Confidence                              11  125789999999999999985    122 24799999999999999999999999999


Q ss_pred             cccCCCCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEE
Q 028621          124 VYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLI  193 (206)
Q Consensus       124 v~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i  193 (206)
                      ||+++|+   ++++|++++++|+.++     ..++|  |+++|..+.++|++ |+|+|+++|+++ .++|++++.||+|
T Consensus       204 v~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i  279 (279)
T cd04250         204 VLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI  279 (279)
T ss_pred             cccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence            9999884   3789999999887653     23444  99999999999986 999999999975 6899999999975

In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A

>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

Probab=99.96  E-value=2e-28  Score=204.14  Aligned_cols=182  Identities=19%  Similarity=0.210  Sum_probs=142.4

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHH-HHHHHHHHHHHHHHhCCCCceEecccccccc--
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGML-ATVMNAIFLQATMESIGIPTRVQTAFRMSEV--   67 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~-~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v--   67 (206)
                      .++|||||||+|.+.  +.+++++++++           ++.+.+. ++++|..+++.++ ++|++++++++.+.+.+  
T Consensus        32 ~~iVlVhGgg~~~~~--~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~  108 (252)
T cd04249          32 RQLVIVHGGGCVVDE--LLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAV  108 (252)
T ss_pred             CCEEEECCCCHHHHH--HHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEE
Confidence            468999999999554  55666665432           3343333 4699999999865 79999999999875433  


Q ss_pred             ----------cch--hHHHHHHHHhhCCCEEEEeCC----CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC
Q 028621           68 ----------AEP--YIRRRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR  130 (206)
Q Consensus        68 ----------~~~--~~~~~l~~~l~~g~ipvi~g~----~g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~  130 (206)
                                ++.  ...+.++.+|++|.|||+++.    .| ..++++|++|+++|.+|+|+ ++|+|||||||++|| 
T Consensus       109 ~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~-  186 (252)
T cd04249         109 TQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADK-  186 (252)
T ss_pred             EEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCC-
Confidence                      211  125789999999999999985    23 24689999999999999999 789999999998765 


Q ss_pred             CCCCCcccccccHHHHhcC---C--cCcc--hHHHHHHHHhCC-CcEEEEcCCCCchHHHHhcCCCcceEE
Q 028621          131 RNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLI  193 (206)
Q Consensus       131 ~~~~a~~i~~i~~~e~~~~---g--~~~~--k~~a~~~a~~~g-i~v~I~~g~~~~~l~~~l~g~~~GT~i  193 (206)
                           ++|++++++|+.++   +  .++|  |++++..+.+.+ ++++|++++.|+.|.++|+|+++||+|
T Consensus       187 -----~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~I  252 (252)
T cd04249         187 -----QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGEPVGTKI  252 (252)
T ss_pred             -----cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCCCCCcCC
Confidence                 68999998877653   2  2344  888888876665 689999999999999999999999986

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).

>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like

Probab=99.96  E-value=1.5e-28  Score=205.25  Aligned_cols=183  Identities=22%  Similarity=0.241  Sum_probs=144.3

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChh-----------hhhHHHHHH-HHHHHHHHHHHHHhCCCCceEecccccccccc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRS-----------SADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMSEVAE   69 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~-----------~~~~~~~~~-~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~   69 (206)
                      .++|||||||++  .+.+++++++..+           .++.+.+.. .++|..+++ .|+++|++++++++.+.+.+..
T Consensus        31 ~~~VlVhG~g~~--~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i~~-~L~~~Gv~a~~l~~~~~~~~~~  107 (256)
T cd04238          31 INPVIVHGGGPE--INELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKELVS-LLNRAGGKAVGLSGKDGGLIKA  107 (256)
T ss_pred             CCEEEECCCcHH--HHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHH-HHHhCCCCCCCcccccCCEEEE
Confidence            468999999999  5556677777532           223333333 589999855 5888999999999988544321


Q ss_pred             -------------hh----HHHHHHHHhhCCCEEEEeCC----CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccC
Q 028621           70 -------------PY----IRRRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDD  127 (206)
Q Consensus        70 -------------~~----~~~~l~~~l~~g~ipvi~g~----~g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~  127 (206)
                                   ..    ..+.++.+|++|.|||++|.    .| ..++++|++|+++|.+|+|++|+|+|||||||++
T Consensus       108 ~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~  187 (256)
T cd04238         108 EKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDD  187 (256)
T ss_pred             EECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCC
Confidence                         01    25789999999999999985    22 2368999999999999999999999999999986


Q ss_pred             CCCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCC-cEEEEcCCCCchHHHHhcC-CCcceEE
Q 028621          128 NPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNI-PVVVFNLNQPGNIAKAIQG-ERVGTLI  193 (206)
Q Consensus       128 dP~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~g-~~~GT~i  193 (206)
                       |     ++++++++++|+.++     ..++|  |+++|..+.+.|+ +++|+++++|++|.+++.+ +..||+|
T Consensus       188 -~-----~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l~~~~~~GT~i  256 (256)
T cd04238         188 -P-----GSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDEGIGTMI  256 (256)
T ss_pred             -C-----CCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHhcCCCCCCCC
Confidence             2     689999999887653     13444  9999999999887 5999999999999988877 6689975

Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>TIGR01027 proB glutamate 5-kinase

Probab=99.96  E-value=8.7e-28  Score=209.62  Aligned_cols=194  Identities=27%  Similarity=0.368  Sum_probs=145.2

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----hhHHHHHHHHHHHHHHHHHHHhCCCCceEe--cccccccccchh--H
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----ADYIGMLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEPY--I   72 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l--~~~~~~~v~~~~--~   72 (206)
                      ++++||||||..+ +.   ++++++...     .+.+...++.....+....|.++|+++..+  +..++.. ...+  .
T Consensus        39 ~~vvlV~sG~~~~-g~---~~lg~~~~~~~l~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~aqillt~~d~~~-~~~~lna  113 (363)
T TIGR01027        39 HEVVIVSSGAIAA-GF---EALGLPERPKTLAEKQALAAVGQVRLMQLYEQLFSQYGIKVAQILLTRADFSD-RERYLNA  113 (363)
T ss_pred             CeEEEEeCcHHhc-Cc---cccCCCCCccchHHHHHHHHhChHHHHHHHHHHHHHcCCeEEEEEEeccchhh-HHHHHHH
Confidence            5799999998542 21   234554432     233444555555556677799999997542  2222110 0112  1


Q ss_pred             HHHHHHHhhCCCEEEEeCC-----CCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHH--H
Q 028621           73 RRRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--E  145 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~-----~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~--e  145 (206)
                      ...++.+|++|.|||++.+     .+..++++|++|+++|.+++||+|+|+|||||||++||+.+|++++|+++++.  +
T Consensus       114 ~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~  193 (363)
T TIGR01027       114 RNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDL  193 (363)
T ss_pred             HHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHH
Confidence            3678899999999999853     12457899999999999999999999999999999999999999999999853  2


Q ss_pred             Hhc--------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCc
Q 028621          146 VTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNST  200 (206)
Q Consensus       146 ~~~--------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~  200 (206)
                      +..        .++++|  |++|+..|.+.|++++|+|+++|++|.++++|+..||+|.++...-
T Consensus       194 ~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~  258 (363)
T TIGR01027       194 LLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQARRL  258 (363)
T ss_pred             HHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeCCCCc
Confidence            221        244556  8889999999999999999999999999999999999999865543

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>PRK06635 aspartate kinase; Reviewed

Probab=99.96  E-value=5.1e-28  Score=214.08  Aligned_cols=185  Identities=26%  Similarity=0.356  Sum_probs=150.1

Q ss_pred             ceEEEEEcC-Chhhhhhhh-hhcC-C-CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-h-----
Q 028621            2 FQVAIVVGG-GNIFRGASA-AGNS-G-LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y-----   71 (206)
Q Consensus         2 ~~~iiVhGG-G~~~~~~~~-~~~~-~-l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~-----   71 (206)
                      +++++|||| |...+.... ++.. . .++...+.+.+.++++|+.+++.+|+++|+++.++++.+++.+.+. +     
T Consensus        34 ~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~  113 (404)
T PRK06635         34 HQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARI  113 (404)
T ss_pred             CCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEe
Confidence            456776665 666555432 2211 1 2455667788889999999999999999999999999987544321 1     


Q ss_pred             ---HHHHHHHHhhCCCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           72 ---IRRRAVRHLEKGRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        72 ---~~~~l~~~l~~g~ipvi~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                         ..+.++.+++.|.|||++|+.|     .    .+++||++|+++|.+|+|+++++||||||||++||+.+|++++++
T Consensus       114 ~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~  193 (404)
T PRK06635        114 TDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLD  193 (404)
T ss_pred             eecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECC
Confidence               2478889999999999999732     2    246999999999999999999999999999999999999999999


Q ss_pred             cccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          140 TLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       140 ~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      +++++|+.++   |...+|++|+.++.++++|++|.|++++.          .||+|..+
T Consensus       194 ~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~~----------~gT~i~~~  243 (404)
T PRK06635        194 KISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSDN----------PGTLITGE  243 (404)
T ss_pred             ccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCCC----------CCCEEeeC
Confidence            9999998875   77788999999999999999999998763          59999765

>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

Probab=99.96  E-value=4.8e-28  Score=205.63  Aligned_cols=161  Identities=24%  Similarity=0.291  Sum_probs=139.0

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh----------------HHHHHHHHhhC-CCEEE
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY----------------IRRRAVRHLEK-GRVVI   87 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~----------------~~~~l~~~l~~-g~ipv   87 (206)
                      .++...|.+.++||++|+.+++.+|++.|+++..++++++...+..+                ..+.+.+.++. +.+||
T Consensus       106 ~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~V  185 (295)
T cd04259         106 ASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALLQKRLADGAQLII  185 (295)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhhhHHHHHHHHhcCCceeE
Confidence            45566788999999999999999999999999999998875443211                13456666665 67999


Q ss_pred             EeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcch
Q 028621           88 FAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMD  155 (206)
Q Consensus        88 i~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k  155 (206)
                      ++||.|     .    .+++||++|+.+|.+++|+++++||||||||++||+.+|++++|++++++|+.++   |.+++|
T Consensus       186 v~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h  265 (295)
T cd04259         186 TQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLH  265 (295)
T ss_pred             eCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccC
Confidence            999843     1    3689999999999999999999999999999999999999999999999998865   788899


Q ss_pred             HHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          156 MTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       156 ~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      ++|+.++.++++|++|.|+++|+         ..||+|.
T Consensus       266 ~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~I~  295 (295)
T cd04259         266 PRCIPPARRANIPMVVRSTERPE---------LSGTLIT  295 (295)
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence            99999999999999999999997         5799984

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.

>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

Probab=99.95  E-value=1.3e-27  Score=203.53  Aligned_cols=162  Identities=21%  Similarity=0.295  Sum_probs=136.8

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-------hh---HHHHHHHHh-h-CCCEEEEeCCCC
Q 028621           26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-------PY---IRRRAVRHL-E-KGRVVIFAAGTG   93 (206)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-------~~---~~~~l~~~l-~-~g~ipvi~g~~g   93 (206)
                      ++...|.+.++||++|+.+++.+|++.|+++..++++++...+.       .+   +.+.+...+ + .+.|||++||.|
T Consensus       121 ~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig  200 (306)
T cd04247         121 SPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFG  200 (306)
T ss_pred             chHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEe
Confidence            44556888899999999999999999999999999988743322       11   122222223 2 468999999844


Q ss_pred             -----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHH
Q 028621           94 -----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITL  161 (206)
Q Consensus        94 -----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~  161 (206)
                           .    .+++||++|+.+|..|+|+++++||||||||++||+.+|++++|++++|+|+.++   |..++|+++..+
T Consensus       201 ~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~p  280 (306)
T cd04247         201 NVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQ  280 (306)
T ss_pred             cCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHH
Confidence                 1    3689999999999999999999999999999999999999999999999998875   788999999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      |.+.+||++|.|.++|+         ..||+|.++
T Consensus       281 a~~~~Ipi~i~nt~~P~---------~~GT~I~~~  306 (306)
T cd04247         281 VIKARIPIRIKNVENPR---------GEGTVIYPD  306 (306)
T ss_pred             HHHcCCcEEEecCCCCC---------CCCcEEcCC
Confidence            99999999999999987         579999864

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.

>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

Probab=99.95  E-value=1.1e-27  Score=203.51  Aligned_cols=161  Identities=27%  Similarity=0.347  Sum_probs=139.2

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hHHHHHHHHhhC-CCEEEEeCCCC-
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YIRRRAVRHLEK-GRVVIFAAGTG-   93 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~~~~l~~~l~~-g~ipvi~g~~g-   93 (206)
                      +++...|.+.++||++|+.+++.+|++.|+++..++++++...+..         ...+.++.++.. +.|||++||.| 
T Consensus       112 ~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~  191 (294)
T cd04257         112 LPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIAS  191 (294)
T ss_pred             CChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccC
Confidence            3455668888899999999999999999999999999986443322         124566776666 89999999843 


Q ss_pred             ----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHH
Q 028621           94 ----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLC  162 (206)
Q Consensus        94 ----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a  162 (206)
                          .    .+++||++|+.+|..|+|+++++||||||||++||+.+|+++++++++++|+.++   |..++++++..++
T Consensus       192 ~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a  271 (294)
T cd04257         192 NPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPV  271 (294)
T ss_pred             CCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHH
Confidence                2    3688999999999999999999999999999999999999999999999998864   7888999999999


Q ss_pred             HhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          163 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       163 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      .++++|++|.|+++|+         ..||+|.
T Consensus       272 ~~~~Ipi~i~~~~~p~---------~~GT~I~  294 (294)
T cd04257         272 AKKNIPILIKNTFNPE---------APGTLIS  294 (294)
T ss_pred             HHCCCCEEEeeCCCCC---------CCCCEeC
Confidence            9999999999999997         5799984

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act

>PRK07431 aspartate kinase; Provisional

Probab=99.95  E-value=2.1e-27  Score=219.03  Aligned_cols=187  Identities=25%  Similarity=0.309  Sum_probs=151.6

Q ss_pred             ceEEEEEcC-Chhhhhhh-hhhcC--CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh------
Q 028621            2 FQVAIVVGG-GNIFRGAS-AAGNS--GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY------   71 (206)
Q Consensus         2 ~~~iiVhGG-G~~~~~~~-~~~~~--~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~------   71 (206)
                      ++++||||| |...+... ..++.  ..+....+.+...++.+|+.+++.+|+++|++++++++.+++.+.+..      
T Consensus        34 ~~vvvV~sa~g~~t~~l~~~~~~~t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i  113 (587)
T PRK07431         34 NDVVVVVSAMGKTTDELVKLAKEISSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARI  113 (587)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceee
Confidence            579999994 66665543 22211  122334567777889999999998999999999999999875543221      


Q ss_pred             ---HHHHHHHHhhCCCEEEEeCCCCC-----------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcc
Q 028621           72 ---IRRRAVRHLEKGRVVIFAAGTGN-----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL  137 (206)
Q Consensus        72 ---~~~~l~~~l~~g~ipvi~g~~g~-----------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~  137 (206)
                         ..+.++++++.|.|||++|+.|.           .++++|++|+.+|.+|+|+++++||||||||++||+.+|++++
T Consensus       114 ~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~  193 (587)
T PRK07431        114 LEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQL  193 (587)
T ss_pred             eeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeE
Confidence               13688899999999999987432           2467999999999999999999999999999999999999999


Q ss_pred             cccccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCC
Q 028621          138 LDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN  198 (206)
Q Consensus       138 i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~  198 (206)
                      |++++++|+.++   |.++||++|+.++.++|+|++|.|++. +         ..||+|.++..
T Consensus       194 i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~-~---------~~GT~i~~~~~  247 (587)
T PRK07431        194 MDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS-D---------APGTLVTSPPP  247 (587)
T ss_pred             CCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC-C---------CCCeEEEeCCc
Confidence            999999998864   788999999999999999999999873 2         36999987643

>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

Probab=99.95  E-value=1.2e-27  Score=203.12  Aligned_cols=161  Identities=28%  Similarity=0.394  Sum_probs=139.4

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh---------HHHHHHHHhhC-CCEEEEeCCCC-
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY---------IRRRAVRHLEK-GRVVIFAAGTG-   93 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~---------~~~~l~~~l~~-g~ipvi~g~~g-   93 (206)
                      .++...|.+.++||++|+.+++.+|++.|+++..++++++......+         ..+.++.+++. +.|||++||.| 
T Consensus       111 ~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~  190 (293)
T cd04243         111 LSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIAS  190 (293)
T ss_pred             CCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence            34556688889999999999999999999999999998764433211         13467777776 89999999843 


Q ss_pred             ----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHH
Q 028621           94 ----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLC  162 (206)
Q Consensus        94 ----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a  162 (206)
                          .    .+++||++|+.+|..++|+++++||||||||++||+.+|++++|++++++|+.++   |..++++++..++
T Consensus       191 ~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a  270 (293)
T cd04243         191 NEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPA  270 (293)
T ss_pred             CCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHH
Confidence                2    3578999999999999999999999999999999999999999999999998874   7888999999999


Q ss_pred             HhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          163 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       163 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      .++++|++|.|+++|+         ..||+|.
T Consensus       271 ~~~~i~i~i~~~~~p~---------~~GT~I~  293 (293)
T cd04243         271 IRKNIPIFIKNTFNPE---------APGTLIS  293 (293)
T ss_pred             HHCCCcEEEecCCCCC---------CCCCEeC
Confidence            9999999999999997         5799984

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-

>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

Probab=99.95  E-value=4.5e-27  Score=198.87  Aligned_cols=187  Identities=20%  Similarity=0.224  Sum_probs=137.3

Q ss_pred             ceEE-EEEcCChhhhhhhhhhcCCC-----------------ChhhhhHH--HHHHHHHHHHHHHHHHHhCCCCceE--e
Q 028621            2 FQVA-IVVGGGNIFRGASAAGNSGL-----------------DRSSADYI--GMLATVMNAIFLQATMESIGIPTRV--Q   59 (206)
Q Consensus         2 ~~~i-iVhGGG~~~~~~~~~~~~~l-----------------~~~~~~~~--~~~~~~~~~~ll~~~l~~~gi~a~~--l   59 (206)
                      +++| |+||++++  ||..+++++.                 +.......  ..++...-..+-..+|.++++++..  +
T Consensus        48 ~~vilVssGAv~~--G~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~q~ll  125 (284)
T cd04256          48 REVILVTSGAVAF--GKQRLRHEILLSSSMRQTLKSGQLKDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLV  125 (284)
T ss_pred             CEEEEEeeCcHHh--ChHHhhhccccccchhhhcccccccCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHHHeee
Confidence            4667 99999999  9887765542                 11111111  1122211122334457777877643  1


Q ss_pred             cccccccccch--h--HHHHHHHHhhCCCEEEEeCCC-----------C---CCCCCcHHHHHHHHHhcCCcEEEEeecc
Q 028621           60 TAFRMSEVAEP--Y--IRRRAVRHLEKGRVVIFAAGT-----------G---NPFFTTDTAAALRCAEINAEVVLKATNV  121 (206)
Q Consensus        60 ~~~~~~~v~~~--~--~~~~l~~~l~~g~ipvi~g~~-----------g---~~~~~sD~~A~~lA~~l~A~~li~ltdV  121 (206)
                      +..++   .+.  +  ..+.++.+|+.|.|||+++++           +   +.++|+|++|+++|..++|++|+|+|||
T Consensus       126 t~~d~---~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDV  202 (284)
T cd04256         126 TKPDF---YDEQTRRNLNGTLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDV  202 (284)
T ss_pred             ecccc---ccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCC
Confidence            11111   111  1  357889999999999999731           1   2458999999999999999999999999


Q ss_pred             CccccCCCCCCCCCcccccccHHHHhcC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcce
Q 028621          122 DGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT  191 (206)
Q Consensus       122 ~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT  191 (206)
                      ||||++||+ .|++++|++++..+..++        ++++|  |++|+..+.++|++++|++|++|++|.++++|+.+||
T Consensus       203 dGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT  281 (284)
T cd04256         203 DGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGT  281 (284)
T ss_pred             CeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCE
Confidence            999999996 689999999988665422        35566  8999999999999999999999999999999999999


Q ss_pred             EEe
Q 028621          192 LIG  194 (206)
Q Consensus       192 ~i~  194 (206)
                      +|.
T Consensus       282 ~~~  284 (284)
T cd04256         282 FFT  284 (284)
T ss_pred             EeC
Confidence            983

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.

>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=99.95  E-value=3.3e-27  Score=200.03  Aligned_cols=161  Identities=24%  Similarity=0.325  Sum_probs=137.1

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hHHHHHHHH---hhCCCEEEEeCCC
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YIRRRAVRH---LEKGRVVIFAAGT   92 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~~~~l~~~---l~~g~ipvi~g~~   92 (206)
                      +++...|.+.++||++|+.+++.+|++.|+++..++++++...+..         ...+.+...   +..+.|||++||.
T Consensus       108 ~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~  187 (292)
T cd04258         108 LSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFI  187 (292)
T ss_pred             cChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCcc
Confidence            3555678999999999999999999999999999999887444321         122222222   3457899999985


Q ss_pred             CC---------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHH
Q 028621           93 GN---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAIT  160 (206)
Q Consensus        93 g~---------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~  160 (206)
                      |.         .+++||++|+.+|..|+|+.+++||||||||++||+.+|+++++++++|+|+.++   |..++++++..
T Consensus       188 g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~  267 (292)
T cd04258         188 GSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLL  267 (292)
T ss_pred             ccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHH
Confidence            42         3688999999999999999999999999999999999999999999999999875   88899999999


Q ss_pred             HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      ++.++++|++|.|.++|+         ..||+|.
T Consensus       268 ~~~~~~ipi~i~~~~~p~---------~~GT~I~  292 (292)
T cd04258         268 PAIRKNIPVFVGSSKDPE---------AGGTLIT  292 (292)
T ss_pred             HHHHcCCcEEEEeCCCCC---------CCCceeC
Confidence            999999999999999987         5799984

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.

>PRK06291 aspartate kinase; Provisional

Probab=99.95  E-value=3.9e-27  Score=211.78  Aligned_cols=163  Identities=27%  Similarity=0.345  Sum_probs=141.6

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-------------hhHHHHHHHHhhCCCEEEEeCC
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-------------PYIRRRAVRHLEKGRVVIFAAG   91 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-------------~~~~~~l~~~l~~g~ipvi~g~   91 (206)
                      +++...|.+.++||++|+.+++.+|+++|+++.++++++++.+..             .++.+.++.+++.|.+||++||
T Consensus       117 ~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gf  196 (465)
T PRK06291        117 LTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGF  196 (465)
T ss_pred             CChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCc
Confidence            345566888999999999999999999999999999998743321             1234567778889999999997


Q ss_pred             C-----CC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHH
Q 028621           92 T-----GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAI  159 (206)
Q Consensus        92 ~-----g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~  159 (206)
                      .     |.    .+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++   |.+++|++|+
T Consensus       197 ig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~  276 (465)
T PRK06291        197 IGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTI  276 (465)
T ss_pred             EEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHH
Confidence            3     22    2579999999999999999999999999999999999999999999999998865   7888999999


Q ss_pred             HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      .+|.++++|++|.|+++|+         ..||+|..+
T Consensus       277 ~~~~~~~i~i~i~~~~~~~---------~~gt~i~~~  304 (465)
T PRK06291        277 EPAMEKGIPVRVKNTFNPE---------FPGTLITSD  304 (465)
T ss_pred             HHHHHcCCcEEEecCCCCC---------CCceEEEec
Confidence            9999999999999999986         579999864

>TIGR00657 asp_kinases aspartate kinase

Probab=99.95  E-value=8.5e-27  Score=208.45  Aligned_cols=159  Identities=26%  Similarity=0.354  Sum_probs=137.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch----------hHHHHHHHHhhCCCEEEEeCCC-----CC
Q 028621           30 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP----------YIRRRAVRHLEKGRVVIFAAGT-----GN   94 (206)
Q Consensus        30 ~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~----------~~~~~l~~~l~~g~ipvi~g~~-----g~   94 (206)
                      .|.+.++||++|+.+++.+|+++|++++.+++.+.+.+...          ...+.+..+++.|.|||++||.     |.
T Consensus       105 ~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~  184 (441)
T TIGR00657       105 MDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGE  184 (441)
T ss_pred             HhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCC
Confidence            35666789999999999999999999999999986544311          1357888899999999999973     22


Q ss_pred             ----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHHhCCC
Q 028621           95 ----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI  167 (206)
Q Consensus        95 ----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi  167 (206)
                          .+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++   |.+++|++|+.++.++++
T Consensus       185 ~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~i  264 (441)
T TIGR00657       185 TTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKI  264 (441)
T ss_pred             EeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcCC
Confidence                2457999999999999999999999999999999999999999999999998865   778899999999999999


Q ss_pred             cEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          168 PVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       168 ~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      |++|.|+++|+         ..||+|.++.
T Consensus       265 ~i~i~~~~~~~---------~~GT~I~~~~  285 (441)
T TIGR00657       265 PIVVKSTFNPE---------APGTLIVAST  285 (441)
T ss_pred             eEEEecCCCCC---------CCceEEEeCC
Confidence            99999999886         4699998753

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK09034 aspartate kinase; Reviewed

Probab=99.95  E-value=7.5e-27  Score=209.27  Aligned_cols=163  Identities=22%  Similarity=0.280  Sum_probs=141.9

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-h--------HHHHHHHHhhCCCEEEEeCCCC---
Q 028621           26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y--------IRRRAVRHLEKGRVVIFAAGTG---   93 (206)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~--------~~~~l~~~l~~g~ipvi~g~~g---   93 (206)
                      ++...|.+.++||++|+.+++.+|++.|+++..+++++++.+++. +        ..+.+..++..+.+||++||.|   
T Consensus       108 ~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~  187 (454)
T PRK09034        108 PDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTK  187 (454)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCC
Confidence            455668899999999999999999999999999999998555321 1        1355556666778999999844   


Q ss_pred             --C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHHh
Q 028621           94 --N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE  164 (206)
Q Consensus        94 --~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~  164 (206)
                        .    .+++||+.|+.+|.+|+|+.+.+||||||||++||+.+|+++.++++||+|+.++   |..++|++|..+|.+
T Consensus       188 ~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~  267 (454)
T PRK09034        188 DGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYR  267 (454)
T ss_pred             CCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHH
Confidence              1    3689999999999999999999999999999999999999999999999999874   889999999999999


Q ss_pred             CCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          165 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       165 ~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      +++|++|.|.++|+         ..||+|..+.
T Consensus       268 ~~Ipi~v~~~~~p~---------~~GT~I~~~~  291 (454)
T PRK09034        268 GGIPINIKNTNNPE---------DPGTLIVPDR  291 (454)
T ss_pred             cCCCEEEEcCCCCC---------CCccEEEecc
Confidence            99999999999986         5799998653

>PLN02551 aspartokinase

Probab=99.94  E-value=1.6e-26  Score=209.37  Aligned_cols=163  Identities=25%  Similarity=0.329  Sum_probs=140.0

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-h----H----HHHHHHHh-----hCCCEEEEeC
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y----I----RRRAVRHL-----EKGRVVIFAA   90 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~----~----~~~l~~~l-----~~g~ipvi~g   90 (206)
                      ++++..|.+.++||++|+.+++.+|++.|+++..+++++++.+++. +    +    .+.+++.+     +.+.|||++|
T Consensus       160 ~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~G  239 (521)
T PLN02551        160 LTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTG  239 (521)
T ss_pred             cchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcC
Confidence            4556678999999999999999999999999999999998655432 1    1    23333333     3568999999


Q ss_pred             CCCC----------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHH
Q 028621           91 GTGN----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMT  157 (206)
Q Consensus        91 ~~g~----------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~  157 (206)
                      |.|.          .+++||+.|+.+|.+|+|+.+.+||||||||++||+.+|+++.++++||+|+.++   |..++|++
T Consensus       240 Fig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~  319 (521)
T PLN02551        240 FLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQ  319 (521)
T ss_pred             ccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHH
Confidence            8542          2588999999999999999999999999999999999999999999999999875   88999999


Q ss_pred             HHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          158 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       158 a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      +..+|.+.+||++|.|.++|+         ..||+|...
T Consensus       320 ai~pa~~~~Ipi~vknt~~p~---------~~GT~I~~~  349 (521)
T PLN02551        320 SMRPAREGDIPVRVKNSYNPT---------APGTLITKT  349 (521)
T ss_pred             HHHHHHHCCceEEEEecCCCC---------CCCcEEecc
Confidence            999999999999999999886         579999764

>PRK08373 aspartate kinase; Validated

Probab=99.94  E-value=3e-26  Score=197.68  Aligned_cols=159  Identities=25%  Similarity=0.393  Sum_probs=137.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh------------HHHHHHHHhhCCCEEEEeCCCCC
Q 028621           27 RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY------------IRRRAVRHLEKGRVVIFAAGTGN   94 (206)
Q Consensus        27 ~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~------------~~~~l~~~l~~g~ipvi~g~~g~   94 (206)
                      +...|.+.+.||++|+.+++.+|+++|+++..++++++...+..+            ..+.+..+++.|.|||++||.++
T Consensus        99 ~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~  178 (341)
T PRK08373         99 EALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYELLERGRVPVVPGFIGN  178 (341)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHHHHHhCCcEEEEeCCccC
Confidence            445789999999999999999999999999999998763332211            13677888999999999998542


Q ss_pred             --------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621           95 --------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ  163 (206)
Q Consensus        95 --------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~  163 (206)
                              .+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++   |..+++++|..++.
T Consensus       179 ~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~  258 (341)
T PRK08373        179 LNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVK  258 (341)
T ss_pred             CCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHH
Confidence                    2468999999999999999999999999999999999999999999999998875   77788999999999


Q ss_pred             hCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      + ++|++|.|.++|+          .||+|...
T Consensus       259 ~-~Ipi~v~~t~~~~----------~GT~I~~~  280 (341)
T PRK08373        259 G-KIPIIFGRTRDWR----------MGTLVSNE  280 (341)
T ss_pred             c-CCcEEEecCCCCC----------CCcEEecC
Confidence            9 9999999988773          59999764

>PRK09084 aspartate kinase III; Validated

Probab=99.94  E-value=2.6e-26  Score=205.48  Aligned_cols=163  Identities=21%  Similarity=0.289  Sum_probs=140.2

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hH----HHHHHHHhhCCCEEEEeCC
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YI----RRRAVRHLEKGRVVIFAAG   91 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~----~~~l~~~l~~g~ipvi~g~   91 (206)
                      .++...|.+.+.||++|+.+++.+|++.|+++..++++++...+..         ..    .+.+..+++.+ +||++||
T Consensus       104 ~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf  182 (448)
T PRK09084        104 TSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGF  182 (448)
T ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCe
Confidence            3556678999999999999999999999999999999887444221         11    24455566778 9999998


Q ss_pred             CC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHH
Q 028621           92 TG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAI  159 (206)
Q Consensus        92 ~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~  159 (206)
                      .|     .    .+++||++|+.+|..|+|+++++||||||||++||+.+|+++++++++|+|+.++   |..++++.+.
T Consensus       183 ~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~  262 (448)
T PRK09084        183 IGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATL  262 (448)
T ss_pred             eecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHH
Confidence            43     1    3689999999999999999999999999999999999999999999999999875   7888999999


Q ss_pred             HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      .++.++++|++|.|+++|+         ..||+|..+.
T Consensus       263 ~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~~  291 (448)
T PRK09084        263 LPAVRSNIPVFVGSSKDPE---------AGGTWICNDT  291 (448)
T ss_pred             HHHHHcCCcEEEEeCCCCC---------CCceEEecCC
Confidence            9999999999999999996         5799998653

>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative

Probab=99.94  E-value=8.7e-26  Score=193.81  Aligned_cols=156  Identities=24%  Similarity=0.361  Sum_probs=131.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh------------HHHHHHHHhhCCCEEEEeCCCCC
Q 028621           27 RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY------------IRRRAVRHLEKGRVVIFAAGTGN   94 (206)
Q Consensus        27 ~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~------------~~~~l~~~l~~g~ipvi~g~~g~   94 (206)
                      +...|.+.++++++|+.+++.     |+++..++++++...+..+            ..+.+..+++.|.|||++||.+.
T Consensus        94 ~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~  168 (327)
T TIGR02078        94 EALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGN  168 (327)
T ss_pred             hHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccC
Confidence            345688999999999988764     7899999998874443210            13566778899999999998442


Q ss_pred             --------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621           95 --------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ  163 (206)
Q Consensus        95 --------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~  163 (206)
                              .+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++   |...+|++|+.++.
T Consensus       169 ~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~  248 (327)
T TIGR02078       169 LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAK  248 (327)
T ss_pred             CCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHH
Confidence                    2468999999999999999999999999999999999999999999999998864   66678999999999


Q ss_pred             hCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      ++|+|++|.|.++|+          .||+|....
T Consensus       249 ~~~Ipi~I~~t~~~~----------~GT~I~~~~  272 (327)
T TIGR02078       249 EYKIPVLFGRTRDWR----------MGTLISNRS  272 (327)
T ss_pred             HCCCeEEEEeCCCcC----------CCcEEecCC
Confidence            999999999998874          599997543

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.

>PRK05925 aspartate kinase; Provisional

Probab=99.94  E-value=2.8e-26  Score=204.28  Aligned_cols=162  Identities=19%  Similarity=0.239  Sum_probs=138.0

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh---------HHHHHHH-HhhCCCEEEEeCCCC--
Q 028621           26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY---------IRRRAVR-HLEKGRVVIFAAGTG--   93 (206)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~---------~~~~l~~-~l~~g~ipvi~g~~g--   93 (206)
                      ++...|.+..+||++|+.+++.+|++.|+++..++++++...+..+         +.+.+.. .++.+.+||++||.|  
T Consensus        98 ~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~  177 (440)
T PRK05925         98 SSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGAN  177 (440)
T ss_pred             CchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeC
Confidence            4455688889999999999999999999999999998874444211         2222222 345678999999843  


Q ss_pred             ---C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621           94 ---N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ  163 (206)
Q Consensus        94 ---~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~  163 (206)
                         .    .+++||++|+++|.+++|+.+++||||||||++||+.+|++++|++++++|+.++   |...+++.+.++|.
T Consensus       178 ~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~  257 (440)
T PRK05925        178 SSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCV  257 (440)
T ss_pred             CCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHH
Confidence               1    4799999999999999999999999999999999999999999999999998865   77788999999999


Q ss_pred             hCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      ++|+|++|.|+++|+         ..||+|.+.
T Consensus       258 ~~~Ipi~I~~~~~p~---------~~GT~i~~~  281 (440)
T PRK05925        258 RAGIPIFVTSTFDVT---------KGGTWIYAS  281 (440)
T ss_pred             HCCCcEEEecCCCCC---------CCccEEecC
Confidence            999999999999997         479999874

>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP)

Probab=99.94  E-value=7.3e-26  Score=188.35  Aligned_cols=180  Identities=15%  Similarity=0.167  Sum_probs=135.7

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccc------
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM------   64 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~------   64 (206)
                      +++|||||||+|  .+.+++++|+++++           ++.+.+...++|..+++. |+++|++++++++..+      
T Consensus        29 ~~~VlVHGgg~~--i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~iv~~-l~~~g~~a~~l~~~~~~a~~~~  105 (248)
T cd04252          29 LYPIVVHGAGPQ--LNEELEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLKLVEA-LERNGARARPITSGVFEAEYLD  105 (248)
T ss_pred             CcEEEEeCCCHH--HHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHHHHHH-HHhCCCCcccccCceEEEEECc
Confidence            478999999999  45567888888754           233444444899999887 7789999999877422      


Q ss_pred             ----ccccch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 028621           65 ----SEVAEP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP  133 (206)
Q Consensus        65 ----~~v~~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~  133 (206)
                          ++++++  ...+.++.+|+.|+|||++|.    .|. .++|+|.+|+.+|.+|+|++|+|+|||||||+++     
T Consensus       106 ~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~~-----  180 (248)
T cd04252         106 KDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDGT-----  180 (248)
T ss_pred             CccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCCC-----
Confidence                222222  125889999999999999985    233 3599999999999999999999999999999752     


Q ss_pred             CCcccccccHH-HHhcC-------CcCcchHHHHHHHHhC--CC-cEEEEcCCCCchHH-HHhcCCCcceEE
Q 028621          134 NARLLDTLTYQ-EVTSK-------DLSVMDMTAITLCQEN--NI-PVVVFNLNQPGNIA-KAIQGERVGTLI  193 (206)
Q Consensus       134 ~a~~i~~i~~~-e~~~~-------g~~~~k~~a~~~a~~~--gi-~v~I~~g~~~~~l~-~~l~g~~~GT~i  193 (206)
                       .++|++++.. +..++       |.+..|++++..+.+.  ++ .++|++   +++|. ++|+.++.||+|
T Consensus       181 -g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g~GT~i  248 (248)
T cd04252         181 -GKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSGAGTLI  248 (248)
T ss_pred             -CCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCCCCccC
Confidence             5789999863 44322       2333499988888876  44 588887   57775 788888899986

The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th

>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase

Probab=99.94  E-value=8.3e-26  Score=201.45  Aligned_cols=187  Identities=14%  Similarity=0.137  Sum_probs=144.0

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHHHHhCCCCceE-----eccc---
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQATMESIGIPTRV-----QTAF---   62 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~l~~~gi~a~~-----l~~~---   62 (206)
                      .++|||||||++++.+.  +++++++++           ++.+.+.+..+|..+++. |++. +++.+     +++.   
T Consensus        49 ~~~vlVHGgg~~i~~~~--~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~vn~~l~~~-l~~~-~~~~~~~~~~l~~~dg~  124 (429)
T TIGR01890        49 VRLVLVHGARPQIERIL--AARGRTPHYHRGLRVTDEASLEQAQQAAGTLRLAIEAR-LSMS-LSNTPMAGSRLPVVSGN  124 (429)
T ss_pred             CcEEEEcCCCHHHHHHH--HHcCCCceeeCCcccCCHHHHHHHHHHhChHHHHHHHH-HHhc-CCcccccccCceEccce
Confidence            47999999999999865  556776543           355555677899999886 5544 44433     3332   


Q ss_pred             -------------ccccccchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 028621           63 -------------RMSEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVD  122 (206)
Q Consensus        63 -------------~~~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~  122 (206)
                                   +++++++..  ..+.++.+|++|++||++|.    .|. .++|+|.+|+.+|.+|+|++|+|+||||
T Consensus       125 ~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~  204 (429)
T TIGR01890       125 FVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSP  204 (429)
T ss_pred             EEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCC
Confidence                         223333321  25889999999999999995    233 3699999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcccccccHHHHhcC-----CcC-cchHHHHHHHHhCCC-cEEEEcCCCCchHH-HHhcCCCcceEEe
Q 028621          123 GVYDDNPRRNPNARLLDTLTYQEVTSK-----DLS-VMDMTAITLCQENNI-PVVVFNLNQPGNIA-KAIQGERVGTLIG  194 (206)
Q Consensus       123 Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~-~~k~~a~~~a~~~gi-~v~I~~g~~~~~l~-~~l~g~~~GT~i~  194 (206)
                      |||++      +.++|++++.+|+.++     +.+ ..|++++..|.+.|+ +++|++++.|++|. ++|+.++.||+|+
T Consensus       205 Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~  278 (429)
T TIGR01890       205 GISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSIS  278 (429)
T ss_pred             cccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEe
Confidence            99974      2579999998777654     332 459999999999998 59999999999986 6789999999999


Q ss_pred             cCCC
Q 028621          195 GTWN  198 (206)
Q Consensus       195 ~~~~  198 (206)
                      .+.+
T Consensus       279 ~d~y  282 (429)
T TIGR01890       279 KEAF  282 (429)
T ss_pred             ccch
Confidence            8764

This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.

>PRK09181 aspartate kinase; Validated

Probab=99.93  E-value=2.3e-25  Score=200.01  Aligned_cols=161  Identities=11%  Similarity=0.099  Sum_probs=135.1

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh----CCCEEEEeCCCCC-------
Q 028621           26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE----KGRVVIFAAGTGN-------   94 (206)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~----~g~ipvi~g~~g~-------   94 (206)
                      +++..|.+.+.||++|+.+++.+|++.|+++..++...+..-....+.+.+.+.++    .+.|||++||.+.       
T Consensus       135 ~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itT  214 (475)
T PRK09181        135 LLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRT  214 (475)
T ss_pred             ChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEe
Confidence            45566889999999999999999999999999977643321111112345555555    4789999998421       


Q ss_pred             -CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCC--CCCcccccccHHHHhcC---CcCcchHHHHHHHHhCCCc
Q 028621           95 -PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIP  168 (206)
Q Consensus        95 -~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~--~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~  168 (206)
                       .+++||++|+.+|.+|+|+++.+||||+ ||++||+.+  |+++.|+++||+|+.++   |..++|+++..+|.+.+||
T Consensus       215 LGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ip  293 (475)
T PRK09181        215 FDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP  293 (475)
T ss_pred             cCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCe
Confidence             3689999999999999999999999997 999999999  68999999999999876   8899999999999999999


Q ss_pred             EEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          169 VVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       169 v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      ++|.|.++|+         ..||+|..+
T Consensus       294 i~V~nt~~p~---------~~GT~I~~~  312 (475)
T PRK09181        294 LRIKNTFEPE---------HPGTLITKD  312 (475)
T ss_pred             EEEecCCCCC---------CCCeEEecC
Confidence            9999999886         579999864

>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts

Probab=99.93  E-value=3.6e-25  Score=187.15  Aligned_cols=182  Identities=18%  Similarity=0.268  Sum_probs=137.9

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHHHHhCCCCceEeccc--------
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQATMESIGIPTRVQTAF--------   62 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~--------   62 (206)
                      +++|||||||++++.+.  ++.++++++           ++.+.+....+|..+.+. |+ +|++++++++.        
T Consensus        50 ~~~ViVHGggp~i~~~~--~~~gi~~~~~~G~RvT~~~~l~~~~~~~g~v~~~l~~~-l~-~~~~a~~~~~~~~~~~~~~  125 (280)
T cd04237          50 IRLVLVHGARPQIDQRL--AERGLEPRYHRGLRITDAAALECVKEAAGAVRLEIEAL-LS-MGLPNSPMAGARIRVVSGN  125 (280)
T ss_pred             CcEEEEeCCCHHHHHHH--HHcCCCccccCCcCcCCHHHHHHHHHHHHHHHHHHHHH-HH-hhccccCcCCCceEEecCe
Confidence            47999999999998865  445655432           344444446788887664 65 48877644321        


Q ss_pred             -------------ccccccch--hHHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccC
Q 028621           63 -------------RMSEVAEP--YIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVD  122 (206)
Q Consensus        63 -------------~~~~v~~~--~~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~  122 (206)
                                   +++++++.  ...+.++.+|++|.+||++|.    .|.. ++++|.+|+.||.+|+|++|+|+||||
T Consensus       126 ~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~  205 (280)
T cd04237         126 FVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGP  205 (280)
T ss_pred             EEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCC
Confidence                         22222221  125889999999999999884    3343 479999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcccccccHHHHhcC---C---cCcc--hHHHHHHHHhCCC-cEEEEcCCCCchHH-HHhcCCCcceE
Q 028621          123 GVYDDNPRRNPNARLLDTLTYQEVTSK---D---LSVM--DMTAITLCQENNI-PVVVFNLNQPGNIA-KAIQGERVGTL  192 (206)
Q Consensus       123 Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g---~~~~--k~~a~~~a~~~gi-~v~I~~g~~~~~l~-~~l~g~~~GT~  192 (206)
                      |||++      +++++++++.+|+.++   +   .++|  |++++..+.+.|+ +++|++++.|+.+. ++|+.++.||+
T Consensus       206 GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~  279 (280)
T cd04237         206 GLLDD------DGELIRELTAQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTL  279 (280)
T ss_pred             cccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCc
Confidence            99974      2589999998777653   1   3455  9999999999999 59999999999987 78999999998


Q ss_pred             E
Q 028621          193 I  193 (206)
Q Consensus       193 i  193 (206)
                      |
T Consensus       280 i  280 (280)
T cd04237         280 I  280 (280)
T ss_pred             C
Confidence            5

Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]

Probab=99.93  E-value=5.7e-25  Score=186.73  Aligned_cols=194  Identities=25%  Similarity=0.377  Sum_probs=142.2

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhh---hH--HHHHHHHHHHHHHHHHHHhCCCCceE--ecccccccccchh--H
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA---DY--IGMLATVMNAIFLQATMESIGIPTRV--QTAFRMSEVAEPY--I   72 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~---~~--~~~~~~~~~~~ll~~~l~~~gi~a~~--l~~~~~~~v~~~~--~   72 (206)
                      +++|||--|.=- -|.   .++|++++..   +.  ....+...-...-..+|..+|+.+-.  ++-.|+..- +-|  .
T Consensus        45 ~eVilVSSGAia-aG~---~~Lg~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r-~ry~Na  119 (369)
T COG0263          45 HEVVLVSSGAIA-AGR---TRLGLPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKVGQILLTRDDFSDR-RRYLNA  119 (369)
T ss_pred             CEEEEEccchhh-hCh---hhcCCCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCeeeEEEeehhhhhhH-HHHHHH
Confidence            467777665433 243   2356555442   21  22233222222334567788888754  333322110 012  2


Q ss_pred             HHHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--HH
Q 028621           73 RRRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QE  145 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~e  145 (206)
                      +..+..+|+.|.|||++.++     +..|+|||.+|+++|...+||.|+++||+||+||+||+.+|++++|++++.  .|
T Consensus       120 r~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~e  199 (369)
T COG0263         120 RNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPE  199 (369)
T ss_pred             HHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHH
Confidence            57899999999999999873     346899999999999999999999999999999999999999999998864  23


Q ss_pred             Hhc--------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCc
Q 028621          146 VTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNST  200 (206)
Q Consensus       146 ~~~--------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~  200 (206)
                      +..        +|+++|  |+.|++.|.++|++++|++|++|+.+.+++.++..||+|.+...+.
T Consensus       200 i~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~GT~F~~~~~~~  264 (369)
T COG0263         200 IEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLFEPQAKER  264 (369)
T ss_pred             HHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCCccEEecCCcch
Confidence            432        256666  9999999999999999999999999999999999999999876544

>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

Probab=99.93  E-value=4.4e-25  Score=186.40  Aligned_cols=160  Identities=13%  Similarity=0.098  Sum_probs=132.3

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccccc---ccch-hHHHHHHHHhhCCCEEEEeCCCC-------
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE---VAEP-YIRRRAVRHLEKGRVVIFAAGTG-------   93 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~---v~~~-~~~~~l~~~l~~g~ipvi~g~~g-------   93 (206)
                      +++...|.+.++||++|+.+++.+|++.|+++..++...+..   .+.. .+.+.++.+...+.+||++||.+       
T Consensus       128 ~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~it  207 (304)
T cd04248         128 HLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMR  207 (304)
T ss_pred             CCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEE
Confidence            456677899999999999999999999999999866654321   1111 12233333223578999999832       


Q ss_pred             -CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCC--CCCcccccccHHHHhcC---CcCcchHHHHHHHHhCCC
Q 028621           94 -NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI  167 (206)
Q Consensus        94 -~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~--~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi  167 (206)
                       ..++.||+.|+.+|.+|+|+.+.+||||+ ||++||+.+  ++++.|++++|+|+.++   |.+++|++++.++.+.+|
T Consensus       208 TLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~I  286 (304)
T cd04248         208 EFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGI  286 (304)
T ss_pred             EcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCC
Confidence             13689999999999999999999999996 999999999  58999999999998875   888999999999999999


Q ss_pred             cEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          168 PVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       168 ~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      |++|.|.++|+         ..||+|.
T Consensus       287 Pi~Vkntf~P~---------~~GTlIt  304 (304)
T cd04248         287 PLRVKNTFEPD---------HPGTLIT  304 (304)
T ss_pred             eEEEecCCCCC---------CCCceeC
Confidence            99999999987         5799984

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=99.93  E-value=2.3e-25  Score=210.59  Aligned_cols=162  Identities=19%  Similarity=0.181  Sum_probs=139.8

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---h-----HHHHHHHHhhC--CCEEEEeCCCC--
Q 028621           26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---Y-----IRRRAVRHLEK--GRVVIFAAGTG--   93 (206)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---~-----~~~~l~~~l~~--g~ipvi~g~~g--   93 (206)
                      ++...|.+.+.||++|+.+++.+|++.|+++..++++++...+..   .     ..+.+++++..  +.+||++||.|  
T Consensus       118 ~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~  197 (810)
T PRK09466        118 NDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRN  197 (810)
T ss_pred             CchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccC
Confidence            455568888999999999999999999999999999886433221   1     23567777754  37999999854  


Q ss_pred             ---C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621           94 ---N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ  163 (206)
Q Consensus        94 ---~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~  163 (206)
                         .    .+++||++|+.+|.+|+|+++.+||||||||++||+.+|++++|+++||+|+.++   |..++|+++..++.
T Consensus       198 ~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~  277 (810)
T PRK09466        198 EAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVS  277 (810)
T ss_pred             CCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHH
Confidence               1    3689999999999999999999999999999999999999999999999998875   88999999999999


Q ss_pred             hCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      +++||++|.|.++|+         ..||+|..+
T Consensus       278 ~~~Ipi~V~ntf~p~---------~~GT~I~~~  301 (810)
T PRK09466        278 GSDIDLQLRCSYQPE---------QGSTRIERV  301 (810)
T ss_pred             HcCCeEEEecCCCCC---------CCceEEecC
Confidence            999999999999986         579999753

>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families

Probab=99.93  E-value=4e-25  Score=182.41  Aligned_cols=169  Identities=26%  Similarity=0.330  Sum_probs=127.3

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhh----------hH--HHHHHHHHHH-----HHHHHHHHhCCCCceEeccccc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA----------DY--IGMLATVMNA-----IFLQATMESIGIPTRVQTAFRM   64 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~----------~~--~~~~~~~~~~-----~ll~~~l~~~gi~a~~l~~~~~   64 (206)
                      +++|||||||++++.  +.+++++.+...          ..  ...+...+|.     .+++. +...+..++.+.+.+.
T Consensus        34 ~~vvvV~g~g~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~-~~~~~~~~~~~~~~~~  110 (242)
T PF00696_consen   34 IKVVVVHGGGSFTDE--LLEKYGIEPKFVDGSRVTDIETGLIITMAAAAELNRDALLDEIVSA-GERLGAHAVGLSLSDG  110 (242)
T ss_dssp             SEEEEEESSHHHHHH--HHHHCTHTTSEETHHCHBHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTHHEEEHHHTGG
T ss_pred             CeEEEEECChhhcCc--hHHhccCCcccchhhhhhhhhhhHHHHHHHhhccccchhHHHHHHh-hhhhhHHHHhhhhhcc
Confidence            689999999999655  456677655332          11  1123345666     66665 7778988888777764


Q ss_pred             ccccch-----hHHHHHHHHhhCCCEEEEeCC-----CCC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC
Q 028621           65 SEVAEP-----YIRRRAVRHLEKGRVVIFAAG-----TGN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR  130 (206)
Q Consensus        65 ~~v~~~-----~~~~~l~~~l~~g~ipvi~g~-----~g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~  130 (206)
                      +.....     ...+.++.+|++|.|||++|+     .|.    +++++|++|+++|.+|+|++|+|+|||||||++||+
T Consensus       111 ~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~  190 (242)
T PF00696_consen  111 GISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPR  190 (242)
T ss_dssp             TEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTT
T ss_pred             cchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCC
Confidence            333221     245789999999999999986     233    579999999999999999999999999999999999


Q ss_pred             CCCCCcccccccHHHHhcCC------cCcc--hHHHHH-HHHhCCCcEEEEc
Q 028621          131 RNPNARLLDTLTYQEVTSKD------LSVM--DMTAIT-LCQENNIPVVVFN  173 (206)
Q Consensus       131 ~~~~a~~i~~i~~~e~~~~g------~~~~--k~~a~~-~a~~~gi~v~I~~  173 (206)
                      .+|+++++++++++|+.++.      .++|  |+.++. .+.+.+++|+|+|
T Consensus       191 ~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n  242 (242)
T PF00696_consen  191 IVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN  242 (242)
T ss_dssp             TSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence            99999999999999988742      3444  555555 5555578999986

In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....

>PRK05279 N-acetylglutamate synthase; Validated

Probab=99.93  E-value=1.3e-24  Score=194.31  Aligned_cols=188  Identities=15%  Similarity=0.210  Sum_probs=141.6

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHHHHhCCCCceEecccc-------
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR-------   63 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~-------   63 (206)
                      +++|||||||++++.+.  ++.|+.+++           ++...+....+|..+.+. |+ +|++++++.+.+       
T Consensus        57 ~~~VlVHGgg~~i~~~~--~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~v~~~l~~~-l~-~g~~a~~~~~~~~~~~~~~  132 (441)
T PRK05279         57 IRLVLVHGARPQIEEQL--AARGIEPRYHKGLRVTDAAALECVKQAAGELRLDIEAR-LS-MGLPNTPMAGAHIRVVSGN  132 (441)
T ss_pred             CeEEEECCCCHHHHHHH--HHcCCCceecCCcccCCHHHHHHHHHHHHHHHHHHHHH-Hh-ccCCCCcccCCcceEeecc
Confidence            47999999999998865  456666443           233334445888887664 65 588887754322       


Q ss_pred             --------------cccccchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 028621           64 --------------MSEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVD  122 (206)
Q Consensus        64 --------------~~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~  122 (206)
                                    ++++++..  ..+.++.+|++|.+||++|.    .|. .++|+|.+|+.||.+|+|++|+|+||||
T Consensus       133 ~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~  212 (441)
T PRK05279        133 FVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQ  212 (441)
T ss_pred             EEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCC
Confidence                          22232221  25789999999999999885    233 3589999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcccccccHHHHhcC------C--cCcc--hHHHHHHHHhCCC-cEEEEcCCCCchHHH-HhcCCCcc
Q 028621          123 GVYDDNPRRNPNARLLDTLTYQEVTSK------D--LSVM--DMTAITLCQENNI-PVVVFNLNQPGNIAK-AIQGERVG  190 (206)
Q Consensus       123 Gv~~~dP~~~~~a~~i~~i~~~e~~~~------g--~~~~--k~~a~~~a~~~gi-~v~I~~g~~~~~l~~-~l~g~~~G  190 (206)
                      |||++      ++++|++++.+|+.++      +  .++|  |++++..+.++|+ +++|++++.|++|.. +++.++.|
T Consensus       213 GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~G  286 (441)
T PRK05279        213 GVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIG  286 (441)
T ss_pred             CccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCc
Confidence            99963      3689999998776542      1  2444  9999999999999 599999999999884 66667799


Q ss_pred             eEEecCCCC
Q 028621          191 TLIGGTWNS  199 (206)
Q Consensus       191 T~i~~~~~~  199 (206)
                      |+|..+.+.
T Consensus       287 T~i~~~~y~  295 (441)
T PRK05279        287 TMIVMESLE  295 (441)
T ss_pred             eEEecCchH
Confidence            999987543

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP

Probab=99.92  E-value=2.3e-24  Score=183.19  Aligned_cols=186  Identities=28%  Similarity=0.357  Sum_probs=135.1

Q ss_pred             ceEEEEEcCChhh----hhhhhhh----cCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccccccc-----
Q 028621            2 FQVAIVVGGGNIF----RGASAAG----NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-----   68 (206)
Q Consensus         2 ~~~iiVhGGG~~~----~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~-----   68 (206)
                      ++++|+||+|+++    ++...+.    .+.++.-..+.+++++..+ ..-+...|...|++....+......++     
T Consensus        42 ~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~~G~ig~~~-~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpa  120 (308)
T cd04235          42 HEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMSQGMIGYML-QQALDNELPKRGIDKPVVTLVTQVVVDANDPA  120 (308)
T ss_pred             CEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchhhHHHHHHH-HHHHHHHHHHcCCCCceEEEEeEEEEcCCCcc
Confidence            7899999999554    4432221    2345555568889999888 555666788888765433322110010     


Q ss_pred             -----------------------------------------chh---H--HHHHHHHhhCCCEEEEeCCCCCC-------
Q 028621           69 -----------------------------------------EPY---I--RRRAVRHLEKGRVVIFAAGTGNP-------   95 (206)
Q Consensus        69 -----------------------------------------~~~---~--~~~l~~~l~~g~ipvi~g~~g~~-------   95 (206)
                                                               .|.   +  .+.++.+|++|.|||++|+.|.|       
T Consensus       121 f~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrvV~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~  200 (308)
T cd04235         121 FKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRVVPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGG  200 (308)
T ss_pred             ccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceeeeCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCc
Confidence                                                     010   1  36788899999999999865544       


Q ss_pred             ------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC------CcCcc--hHHHHHH
Q 028621           96 ------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITL  161 (206)
Q Consensus        96 ------~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------g~~~~--k~~a~~~  161 (206)
                            ++|+|++|+++|.+++||+|+++|||||||++++  .|++++|++++++|+.++      +.++|  |++++..
T Consensus       201 ~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~  278 (308)
T cd04235         201 LKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIR  278 (308)
T ss_pred             eeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHH
Confidence                  3567999999999999999999999999999654  578999999999887643      23445  9999977


Q ss_pred             HHhCC-CcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          162 CQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       162 a~~~g-i~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +.+.+ .+++|++   ++++.++|+|+ .||+|.
T Consensus       279 ~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~  308 (308)
T cd04235         279 FVESGGKKAIITS---LENAEAALEGK-AGTVIV  308 (308)
T ss_pred             HHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence            66654 6788876   78899999998 799983

Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).

>PRK12353 putative amino acid kinase; Reviewed

Probab=99.92  E-value=4.2e-24  Score=183.03  Aligned_cols=117  Identities=26%  Similarity=0.328  Sum_probs=98.2

Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           73 RRRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~g~~-------------~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                      .+.++.+|++|.|||++|+.|.|             ++|+|.+|+++|.+|+||+|+++|||||||+++|  .|++++|+
T Consensus       175 ~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~i~  252 (314)
T PRK12353        175 IEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKKLD  252 (314)
T ss_pred             HHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeECc
Confidence            47888999999999999763322             3788999999999999999999999999999766  47899999


Q ss_pred             cccHHHHhcC------CcCcc--hHHHHHHHH--hCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          140 TLTYQEVTSK------DLSVM--DMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       140 ~i~~~e~~~~------g~~~~--k~~a~~~a~--~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +++++|+.++      +.++|  |+++|..+.  +.|++++|++   ++++.++++|+ .||+|.+
T Consensus       253 ~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~~  314 (314)
T PRK12353        253 EVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIVK  314 (314)
T ss_pred             CcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence            9998876643      33445  899998877  6788999997   78899999998 8999964

>TIGR00761 argB acetylglutamate kinase

Probab=99.92  E-value=1.7e-24  Score=178.28  Aligned_cols=162  Identities=19%  Similarity=0.201  Sum_probs=124.6

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEeccccccccc-
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-   68 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~-   68 (206)
                      .++|||||||++  .+.++++++++.++           ++.+.. +++++|..+++ .|+++|++++++++.+...+. 
T Consensus        30 ~~~VlVhggg~~--~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~~-~L~~~G~~a~~l~~~~~~~it~  106 (231)
T TIGR00761        30 IKPVIVHGGGPE--INELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELVA-LLNKHGINAIGLTGGDGQLFTA  106 (231)
T ss_pred             CCEEEEcCCcHH--HHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHHH-HHHhCCCCcccccCCCCCEEEE
Confidence            468999999999  44456667754322           122222 35589998888 588899999999998753331 


Q ss_pred             ------------ch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 028621           69 ------------EP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP  129 (206)
Q Consensus        69 ------------~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP  129 (206)
                                  +.  ...+.++++|++|.|||++|+    .|. .++++|++|+.+|.+|+|++++|+|||||||++||
T Consensus       107 ~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~  186 (231)
T TIGR00761       107 RSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDG  186 (231)
T ss_pred             EECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCC
Confidence                        11  125889999999999999995    122 36899999999999999999999999999999877


Q ss_pred             CCCCCCcccccccHHHHhcC---C--cCcc--hHHHHHHHHhCCCc-EEE
Q 028621          130 RRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENNIP-VVV  171 (206)
Q Consensus       130 ~~~~~a~~i~~i~~~e~~~~---g--~~~~--k~~a~~~a~~~gi~-v~I  171 (206)
                           .++|++++++|+.++   +  .++|  |+++|..+.+.|++ ++|
T Consensus       187 -----~~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~i  231 (231)
T TIGR00761       187 -----QSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVHI  231 (231)
T ss_pred             -----CeeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEEC
Confidence                 368999999887654   2  3455  99999999999997 554

This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=99.92  E-value=1.9e-24  Score=205.34  Aligned_cols=162  Identities=27%  Similarity=0.314  Sum_probs=139.3

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hHHHHHHHHh-hCCCEEEEeCCCC--
Q 028621           26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YIRRRAVRHL-EKGRVVIFAAGTG--   93 (206)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~~~~l~~~l-~~g~ipvi~g~~g--   93 (206)
                      +++..|.+..+||++|+.+++.+|++.|+++..++++++...+..         ...+.+++++ +.+.+||++||.|  
T Consensus       115 ~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~  194 (819)
T PRK09436        115 PDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGN  194 (819)
T ss_pred             ChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCC
Confidence            455568888899999999999999999999999999886443321         1234556554 4688999999843  


Q ss_pred             ---C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621           94 ---N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ  163 (206)
Q Consensus        94 ---~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~  163 (206)
                         .    .+++||++|+++|..++|+.+++||||||||++||+.+|++++|++++|+|+.++   |.+++|++|+.+|.
T Consensus       195 ~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~  274 (819)
T PRK09436        195 EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIA  274 (819)
T ss_pred             CCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHH
Confidence               1    3688999999999999999999999999999999999999999999999998874   88899999999999


Q ss_pred             hCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      ++++|++|.|+++|+         ..||+|..+
T Consensus       275 ~~~Ipi~i~n~~~p~---------~~GT~I~~~  298 (819)
T PRK09436        275 QFQIPCLIKNTFNPQ---------APGTLIGAE  298 (819)
T ss_pred             HCCceEEEccCCCCC---------CCceEEEec
Confidence            999999999999987         579999764

>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals

Probab=99.92  E-value=2e-24  Score=180.99  Aligned_cols=175  Identities=10%  Similarity=0.107  Sum_probs=134.9

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccc----------ccccchh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM----------SEVAEPY   71 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~----------~~v~~~~   71 (206)
                      .++|||||||++++...  +    +..+...-+.+. ..|..+++. |+++|++++++++.+.          +++++..
T Consensus        68 l~~VlVHGggp~i~~~l--~----~~~~~~~~~v~~-~~n~~Lv~~-L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~  139 (271)
T cd04236          68 MKLLVVMGLSAPDGTNM--S----DLELQAARSRLV-KDCKTLVEA-LQANSAAAHPLFSGESVLQAEEPEPGASKGPSV  139 (271)
T ss_pred             CeEEEEeCCChHHhhhh--c----CCcchheehhHH-HHHHHHHHH-HHhCCCCeeeecCccceEEEEEcccCCccceEE
Confidence            57899999999987632  2    222222222334 889999886 7889999999988732          1222221


Q ss_pred             --HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH-
Q 028621           72 --IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY-  143 (206)
Q Consensus        72 --~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~-  143 (206)
                        ..+.++.+|++|.|||++|.    .|+. ++++|.+|+.+|.+|+|++|+|+||++|||+++      .++|++++. 
T Consensus       140 ~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~~------g~lI~~l~~~  213 (271)
T cd04236         140 SVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQK------HKVLPQVHLP  213 (271)
T ss_pred             EECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECCC------CCCccccCcH
Confidence              25889999999999999995    3443 599999999999999999999999999999742      579999995 


Q ss_pred             HHHhcC-------CcC---cchHHHHHHHHhCCCcEEEEcCCCCchHH-HHhcCCCcceEE
Q 028621          144 QEVTSK-------DLS---VMDMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLI  193 (206)
Q Consensus       144 ~e~~~~-------g~~---~~k~~a~~~a~~~gi~v~I~~g~~~~~l~-~~l~g~~~GT~i  193 (206)
                      +|+.++       |.+   ..|++++..+...|++|+|++   |+.+. ++|+.++.||+|
T Consensus       214 ~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~  271 (271)
T cd04236         214 ADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKGSGTLF  271 (271)
T ss_pred             HHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence            776643       333   348899999999999999998   77765 899999999975

Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).

>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

Probab=99.92  E-value=4.1e-24  Score=165.83  Aligned_cols=173  Identities=23%  Similarity=0.333  Sum_probs=142.6

Q ss_pred             eEEEEEcCChhhhhhhhh-hcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            3 QVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         3 ~~iiVhGGG~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      ++++|+|||-|++-++.. +++++++...|||++.++.+...+++++........+          .+|      +...+
T Consensus        28 ~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~tv----------~ep------~~~i~   91 (212)
T COG2054          28 SILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDTV----------TEP------EDGIK   91 (212)
T ss_pred             eEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhccccccee----------ech------hhccC
Confidence            489999999999988744 5689999999999999999999999986543332221          111      23344


Q ss_pred             CCCEEEEeCC---------CCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcC
Q 028621           82 KGRVVIFAAG---------TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS  152 (206)
Q Consensus        82 ~g~ipvi~g~---------~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~  152 (206)
                      .+..||+-|.         -..|.++||++|.++|++++|.++++.|||||||+.+|    +++++++|+.+|+.. |..
T Consensus        92 ~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~----~~kLv~eI~A~dl~~-~~t  166 (212)
T COG2054          92 PDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDP----KGKLVREIRASDLKT-GET  166 (212)
T ss_pred             cccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCC----cchhhhhhhHhhccc-Ccc
Confidence            5666676653         13578999999999999999999999999999999876    358999999999875 666


Q ss_pred             cchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCC-cceEEecC
Q 028621          153 VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLIGGT  196 (206)
Q Consensus       153 ~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~-~GT~i~~~  196 (206)
                      .++..+...+.+.++.++++||..|+++.+++.|+. +||+|.+.
T Consensus       167 ~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg~  211 (212)
T COG2054         167 SVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVGG  211 (212)
T ss_pred             cccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeCC
Confidence            789999999999999999999999999999999965 79999863

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=99.92  E-value=3.1e-24  Score=201.41  Aligned_cols=186  Identities=20%  Similarity=0.303  Sum_probs=136.2

Q ss_pred             ceEEE-EEcCChhhhhhhhhhcCCC----------ChhhhhHHHHHHHHHHHHHHH---HHHHhCCCCceEecccccccc
Q 028621            2 FQVAI-VVGGGNIFRGASAAGNSGL----------DRSSADYIGMLATVMNAIFLQ---ATMESIGIPTRVQTAFRMSEV   67 (206)
Q Consensus         2 ~~~ii-VhGGG~~~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~~ll~---~~l~~~gi~a~~l~~~~~~~v   67 (206)
                      +++|| +||++++  |+..++.+++          +....+.....+..++ .|+.   ..++++++.+.     ++...
T Consensus        46 ~~vilVsSGA~a~--G~~~~~~~~~~~~~~~~~~~~~~~~~~qa~aa~gq~-~L~~~y~~~f~~~~i~~a-----Q~Llt  117 (715)
T TIGR01092        46 REVILVTSGAVAF--GRQRLRHRILVNSSFADLQKPQPELDGKACAAVGQS-GLMALYETMFTQLDITAA-----QILVT  117 (715)
T ss_pred             CEEEEEccchHHh--chHHhccchhccccccccCCCCchHHHHHHHHHHHH-HHHHHHHHHHHHcCCeeE-----EEEec
Confidence            46665 9999999  8876655542          2222344444444444 3333   34555566554     32222


Q ss_pred             cch------h--HHHHHHHHhhCCCEEEEeCCC-----CC-------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccC
Q 028621           68 AEP------Y--IRRRAVRHLEKGRVVIFAAGT-----GN-------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDD  127 (206)
Q Consensus        68 ~~~------~--~~~~l~~~l~~g~ipvi~g~~-----g~-------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~  127 (206)
                      .+.      +  ..+.++.+|+.|.|||+++++     +.       .++|||.+|+++|.+++||+|+++|||||||++
T Consensus       118 ~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~  197 (715)
T TIGR01092       118 DLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDG  197 (715)
T ss_pred             hhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCC
Confidence            211      1  257899999999999998741     11       168999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccccHHHHh-c--------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          128 NPRRNPNARLLDTLTYQEVT-S--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       128 dP~~~~~a~~i~~i~~~e~~-~--------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      ||+ +|++++|++++..+.. +        .++++|  |++++..+.++|++++|+|+++|++|.++++|+..||+|.++
T Consensus       198 dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~  276 (715)
T TIGR01092       198 PPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHED  276 (715)
T ss_pred             CCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence            996 6899999988764322 1        124555  999999999999999999999999999999999999999774

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>PRK12352 putative carbamate kinase; Reviewed

Probab=99.91  E-value=9.7e-23  Score=174.15  Aligned_cols=185  Identities=19%  Similarity=0.220  Sum_probs=133.5

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh-------hhhh-----HHHHHHHHHHHHHHHHHHHhCCCCc-------eEeccc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR-------SSAD-----YIGMLATVMNAIFLQATMESIGIPT-------RVQTAF   62 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-------~~~~-----~~~~~~~~~~~~ll~~~l~~~gi~a-------~~l~~~   62 (206)
                      +++|||||+|++++...  .+.++..       ...+     ..+.++..+++.|... |.++|..+       +.+++.
T Consensus        45 ~~lVivHG~GPqI~~~l--~~~~~~~~~~g~rvt~~~~~v~~~~g~i~~~i~~~L~~~-l~~~g~~~~~~vvt~v~vs~~  121 (316)
T PRK12352         45 YDIVLTHGNGPQVGLDL--RRAEIAHEREGLPLTPLANCVADTQGGIGYLIQQALNNR-LARHGEKKAVTVVTQVEVDKN  121 (316)
T ss_pred             CeEEEEeCCCHHHHHHH--HHcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCeeEEEEEEEECCC
Confidence            78999999999998754  3333332       2233     1233456888888775 66677554       445643


Q ss_pred             cc----------------------------ccccc-----------h---h--HHHHHHHHhhCCCEEEEe---------
Q 028621           63 RM----------------------------SEVAE-----------P---Y--IRRRAVRHLEKGRVVIFA---------   89 (206)
Q Consensus        63 ~~----------------------------~~v~~-----------~---~--~~~~l~~~l~~g~ipvi~---------   89 (206)
                      |.                            .++.+           |   .  ..+.++.+|++|+|+|.+         
T Consensus       122 D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~  201 (316)
T PRK12352        122 DPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVR  201 (316)
T ss_pred             CccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCeEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEe
Confidence            32                            11111           0   1  147889999999995554         


Q ss_pred             CCCCC----C-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC--------CcCcchH
Q 028621           90 AGTGN----P-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDM  156 (206)
Q Consensus        90 g~~g~----~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~~~k~  156 (206)
                      +..|.    . +++.|..|+.+|.+|+||+|+|+|||+|||.+++  +|++++|++++.+|+.++        |.+..|+
T Consensus       202 ~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~--~~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl  279 (316)
T PRK12352        202 TDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFG--KPQQQALDRVDIATMTRYMQEGHFPPGSMLPKI  279 (316)
T ss_pred             CCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCcccccccCHHHHHHHHhcCCcCCCCCHHHH
Confidence            22222    1 3789999999999999999999999999998765  356789999999887753        2334499


Q ss_pred             HHHHHHHhCCC-cEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          157 TAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       157 ~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      ++|..+++.|+ +++|++   ++.+.++|+|+ .||+|..
T Consensus       280 ~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~  315 (316)
T PRK12352        280 IASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK  315 (316)
T ss_pred             HHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence            99999999888 599996   88899999998 8999964

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=99.90  E-value=2.2e-23  Score=199.35  Aligned_cols=163  Identities=23%  Similarity=0.281  Sum_probs=136.5

Q ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc--------hh--------H-HHHHHHHhhCC-CEEE
Q 028621           26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE--------PY--------I-RRRAVRHLEKG-RVVI   87 (206)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~--------~~--------~-~~~l~~~l~~g-~ipv   87 (206)
                      +++..|.+.+.||++|+.+++.+|++.|+++..++++++..++.        .+        . ...++.+++.+ .+||
T Consensus       115 ~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V  194 (861)
T PRK08961        115 SLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLI  194 (861)
T ss_pred             ChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccceecHhhHHHHHHHHhccCCeEEE
Confidence            44455777789999999999999999999999999988754433        01        1 12344445544 5999


Q ss_pred             EeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcch
Q 028621           88 FAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMD  155 (206)
Q Consensus        88 i~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k  155 (206)
                      ++||.|     .    .+++||++|+.+|..|+|+++++||||||||++||+.+|++++|++++++|+.++   |.+++|
T Consensus       195 v~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~  274 (861)
T PRK08961        195 TQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLH  274 (861)
T ss_pred             eCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEEC
Confidence            999844     1    3699999999999999999999999999999999999999999999999998865   788899


Q ss_pred             HHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          156 MTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       156 ~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      ++|+.+|.+++||++|.|+++|+         ..||+|..+.
T Consensus       275 ~~a~~~a~~~~i~i~v~~~~~~~---------~~gT~I~~~~  307 (861)
T PRK08961        275 PRSIKPCRDAGIPMAILDTERPD---------LSGTSIDGDA  307 (861)
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCC---------CCccEEeCCC
Confidence            99999999999999999999885         5799998653

>TIGR00746 arcC carbamate kinase

Probab=99.90  E-value=2.5e-22  Score=171.32  Aligned_cols=116  Identities=25%  Similarity=0.382  Sum_probs=94.2

Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           73 RRRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~g~~-------------~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                      .+.++.+|++|.++|.+|..|.|             ++|+|.+|+++|.+++||+|+++|||||||+++  ..|++++|+
T Consensus       172 ~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~--~~p~a~~i~  249 (310)
T TIGR00746       172 AETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINY--GKPDEKALR  249 (310)
T ss_pred             HHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCC--CCCCCcCCc
Confidence            36888999999865555543332             469999999999999999999999999999974  357889999


Q ss_pred             cccHHHHhcC------CcCcc--hHHHHHHHHhC-CCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          140 TLTYQEVTSK------DLSVM--DMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~-gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +++.+|+.++      +.++|  |+++|..+.+. +.+++|++   ++++.++++|+ .||+|.
T Consensus       250 ~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~  309 (310)
T TIGR00746       250 EVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT  309 (310)
T ss_pred             CcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence            9999887643      23445  89999766665 56899997   78999999999 999986

The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.

>PLN02825 amino-acid N-acetyltransferase

Probab=99.89  E-value=2e-22  Score=181.83  Aligned_cols=191  Identities=14%  Similarity=0.150  Sum_probs=145.2

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHH--------HHhCCCCc----eE
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQAT--------MESIGIPT----RV   58 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~--------l~~~gi~a----~~   58 (206)
                      +++|||||||++++...  ++.|+++++           ++....++..+|..+.+.+        |+++|+++    ..
T Consensus        49 i~~VlVHGggpqI~~~l--~~~gi~~~f~~G~RVTd~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~g  126 (515)
T PLN02825         49 IKFVLVPGTHVQIDKLL--AERGREPKYVGAYRITDSAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVG  126 (515)
T ss_pred             CCEEEEcCCCHHHHHHH--HHcCCCceeeCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCc
Confidence            58999999999999854  556766544           3444557778999998753        67889988    55


Q ss_pred             eccccc----------------ccccchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEE
Q 028621           59 QTAFRM----------------SEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVV  115 (206)
Q Consensus        59 l~~~~~----------------~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~l  115 (206)
                      +++.+.                +++++..  ..+.|+.+|++|.|||++|.    +|+. ++++|..|+.+|.+|+|++|
T Consensus       127 l~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KL  206 (515)
T PLN02825        127 VSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKL  206 (515)
T ss_pred             eEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeE
Confidence            655442                2222211  25889999999999999995    4554 49999999999999999999


Q ss_pred             EEeeccCccccCCCCCCCCCcccccccHHHHhcC---C------------------------c-----------------
Q 028621          116 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D------------------------L-----------------  151 (206)
Q Consensus       116 i~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g------------------------~-----------------  151 (206)
                      ||+||++ +++.+      .++|++++.+|+.++   +                        .                 
T Consensus       207 I~ltd~~-~~~~~------g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (515)
T PLN02825        207 ICIVDGP-ILDEN------GRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWG  279 (515)
T ss_pred             EEEeCcc-eecCC------CCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhccccccccccccccccccccccccccccc
Confidence            9999977 55432      467888887665422   0                        0                 


Q ss_pred             ---------------C-------------------cc-----hHHHHHHHHhCCCc-EEEEcCCCCchHH-HHhcCCCcc
Q 028621          152 ---------------S-------------------VM-----DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVG  190 (206)
Q Consensus       152 ---------------~-------------------~~-----k~~a~~~a~~~gi~-v~I~~g~~~~~l~-~~l~g~~~G  190 (206)
                                     .                   ..     ++.+|..|++.|++ +|++++..++.|+ ++|+.+++|
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~g  359 (515)
T PLN02825        280 SGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMG  359 (515)
T ss_pred             cccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCce
Confidence                           0                   00     37888999999996 9999999999986 899999999


Q ss_pred             eEEecCCCCcc
Q 028621          191 TLIGGTWNSTV  201 (206)
Q Consensus       191 T~i~~~~~~~~  201 (206)
                      |+|..+.++..
T Consensus       360 t~i~~~~~e~I  370 (515)
T PLN02825        360 TMIASDMYEGT  370 (515)
T ss_pred             eEeccChHhhh
Confidence            99998877654

>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed

Probab=99.89  E-value=9.1e-22  Score=167.22  Aligned_cols=117  Identities=26%  Similarity=0.359  Sum_probs=95.6

Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           73 RRRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~g~~-------------~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                      .+.++.+|++|.|||++|+.|.|             ++|+|.+|+++|.+|+||+|+|+|||||||++ + ..|++++|+
T Consensus       175 ~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~-~~p~~~~i~  252 (313)
T PRK12454        175 IEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-Y-GKPDQKPLD  252 (313)
T ss_pred             HHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-C-CCCCCeEcc
Confidence            47888999999999999764433             35689999999999999999999999999986 3 257889999


Q ss_pred             cccHHHHhcC------CcCcc--hHHHHHHHHhCC-CcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          140 TLTYQEVTSK------DLSVM--DMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~g-i~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +++.+|+.++      ..+.|  |+++|..+.+.+ .+++|++   ++++.++++|+ .||+|.+
T Consensus       253 ~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~  313 (313)
T PRK12454        253 KVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP  313 (313)
T ss_pred             ccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence            9999887642      23444  899997777665 5799885   67899999998 7999964

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.88  E-value=3e-21  Score=181.25  Aligned_cols=163  Identities=21%  Similarity=0.328  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCceEe--cccccccccchh--HHHHHHHHhhCCCEEEEeCCCC-----C-------C
Q 028621           32 YIGMLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTG-----N-------P   95 (206)
Q Consensus        32 ~~~~~~~~~~~~ll~~~l~~~gi~a~~l--~~~~~~~v~~~~--~~~~l~~~l~~g~ipvi~g~~g-----~-------~   95 (206)
                      .+...|+.++..+++.+|+++|+++..+  +..++.. ...+  ..+.++.+|+.|.|||+++++.     .       .
T Consensus        95 a~aa~Gq~~l~~~~~~~f~~~g~~~~qillT~~~~~~-~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~~~~  173 (718)
T PLN02418         95 ACAAVGQSELMALYDTLFSQLDVTASQLLVTDSDFRD-PDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDSSGI  173 (718)
T ss_pred             HHHHhhHHHHHHHHHHHHHHcCCeEEEEEecHhHhcc-hhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccccCe
Confidence            4467899999999999999999977642  2111110 0111  2578899999999999998521     1       2


Q ss_pred             CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHh---c------CCcCcc--hHHHHHHHHh
Q 028621           96 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT---S------KDLSVM--DMTAITLCQE  164 (206)
Q Consensus        96 ~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~---~------~g~~~~--k~~a~~~a~~  164 (206)
                      +++||++|+++|.+++|++|+|+|||||||++||+ .|++++|++++..+..   .      .++++|  |++++..+.+
T Consensus       174 ~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~  252 (718)
T PLN02418        174 FWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAAS  252 (718)
T ss_pred             ecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHH
Confidence            45899999999999999999999999999999997 5889999998754321   1      134555  9999999999


Q ss_pred             CCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          165 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       165 ~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      +|++++|+||++|++|.++++|+..||+|.++
T Consensus       253 ~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  284 (718)
T PLN02418        253 AGIPVVITSGYALDNIRKVLRGERVGTLFHQD  284 (718)
T ss_pred             CCCcEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence            99999999999999999999999999999874

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=99.87  E-value=6e-22  Score=169.43  Aligned_cols=166  Identities=24%  Similarity=0.325  Sum_probs=140.4

Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-h----H----HHHHHHHh-----hCCCEEEEe
Q 028621           24 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y----I----RRRAVRHL-----EKGRVVIFA   89 (206)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~----~----~~~l~~~l-----~~g~ipvi~   89 (206)
                      .++.+..|++..+++.+|.++++++|+..|+++..++.++++.++.. +    +    ...+.+++     ..+.+||+.
T Consensus       186 Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvT  265 (559)
T KOG0456|consen  186 ELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVT  265 (559)
T ss_pred             hcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEe
Confidence            34555668899999999999999999999999999999988766532 1    1    11111222     247899999


Q ss_pred             CCCCC----------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchH
Q 028621           90 AGTGN----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDM  156 (206)
Q Consensus        90 g~~g~----------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~  156 (206)
                      ||.|.          .++.+|.+|+.+|.+|++|.+-.|+|||||+++||++.|.|+++|.++++|+.++   |+.++|+
T Consensus       266 Gf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP  345 (559)
T KOG0456|consen  266 GFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHP  345 (559)
T ss_pred             eccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccc
Confidence            98552          3688999999999999999999999999999999999999999999999998876   8889999


Q ss_pred             HHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCC
Q 028621          157 TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN  198 (206)
Q Consensus       157 ~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~  198 (206)
                      .+.+++.+..||++|.|..+|-         ..||.|.++..
T Consensus       346 ~sM~~~~~~~IPvRvKN~~NP~---------~~GTvI~~d~~  378 (559)
T KOG0456|consen  346 FSMRPAREGRIPVRVKNSYNPT---------APGTVITPDRD  378 (559)
T ss_pred             cccchhhccCcceEeecCCCCC---------CCceEeccchh
Confidence            9999999999999999998886         68999999743

>PRK12686 carbamate kinase; Reviewed

Probab=99.87  E-value=7.2e-21  Score=161.93  Aligned_cols=116  Identities=22%  Similarity=0.312  Sum_probs=95.5

Q ss_pred             HHHHHHHhhCCCEEEEeCCCCC-------------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           73 RRRAVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~g~-------------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                      .+.++.+|++|.|||.+|..|.             .++|+|.+|+.||.+|+||+|+|+|||||||++ |+ .|++++|+
T Consensus       173 ~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~-~~-~p~ak~I~  250 (312)
T PRK12686        173 HDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN-FN-KPNQQKLD  250 (312)
T ss_pred             HHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC-CC-CCCCeECC
Confidence            5789999999999988754221             257999999999999999999999999999995 43 47889999


Q ss_pred             cccHHHHhcC------CcCcc--hHHHHHHHHhC--CCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          140 TLTYQEVTSK------DLSVM--DMTAITLCQEN--NIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~--gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +++.+|+.++      ++++|  |++||..+.+.  |.+++|++   ++.+.+++.|+ .||+|.
T Consensus       251 ~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~  311 (312)
T PRK12686        251 DITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT  311 (312)
T ss_pred             ccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence            9999887643      23445  99999998865  45788887   78888999998 799985

>PRK12354 carbamate kinase; Reviewed

Probab=99.86  E-value=1.2e-20  Score=160.02  Aligned_cols=120  Identities=28%  Similarity=0.277  Sum_probs=95.5

Q ss_pred             HHHHHHHhhCCCEEEEeCCCCC--------------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCccc
Q 028621           73 RRRAVRHLEKGRVVIFAAGTGN--------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL  138 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~g~--------------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i  138 (206)
                      .+.++.+|++|.|||.+|+.|.              .++|+|.+|+.||.+++||+|+|+|||||||++++  .|++++|
T Consensus       165 ~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i  242 (307)
T PRK12354        165 IRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAI  242 (307)
T ss_pred             HHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeEC
Confidence            5789999999998776543211              15789999999999999999999999999999753  5788999


Q ss_pred             ccccHHHHhcC----CcCcchHHHHHHHHhCCC-cEEEEcCCCCchHHHHhcCCCcceEEecCCC
Q 028621          139 DTLTYQEVTSK----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGGTWN  198 (206)
Q Consensus       139 ~~i~~~e~~~~----g~~~~k~~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~  198 (206)
                      ++++.+|+.++    |++..|++||..+.+.+. +++|.   .++.+.++|+|+ .||+|.++..
T Consensus       243 ~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~---~~~~l~~al~G~-~GT~I~~~~~  303 (307)
T PRK12354        243 AQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIG---SLEDIQAILAGE-AGTRISPETA  303 (307)
T ss_pred             CCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEEC---CHHHHHHHHCCC-CceEEecCCC
Confidence            99999888754    334449999977666544 68775   367888999987 7999987543

>PRK04531 acetylglutamate kinase; Provisional

Probab=99.86  E-value=1.1e-20  Score=166.41  Aligned_cols=159  Identities=15%  Similarity=0.237  Sum_probs=118.7

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhh-----------hHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA-----------DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP   70 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~   70 (206)
                      .++|||||||++++...  ++.|+++++.           +.+.+....+|..++..                       
T Consensus        67 ~~~VlVHGggpqI~~~l--~~~gie~~~v~G~RVTd~~tl~vv~~~l~~vn~~lv~~-----------------------  121 (398)
T PRK04531         67 LTPIVVHGAGPQLDAEL--DAAGIEKETVNGLRVTSPEALAIVRKVFQRSNLDLVEA-----------------------  121 (398)
T ss_pred             CcEEEEECCCHHHHHHH--HHcCCCcEEECCEecCCHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence            47899999999999854  5567776542           22222222444443332                       


Q ss_pred             hHHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH-H
Q 028621           71 YIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY-Q  144 (206)
Q Consensus        71 ~~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~-~  144 (206)
                           ++.+|+.|.|||++|.    .|+. ++++|.+|+.+|.+|+|++|+|+|||+|||+.+      +++|++++. +
T Consensus       122 -----I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~  190 (398)
T PRK04531        122 -----VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLST  190 (398)
T ss_pred             -----HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHHH
Confidence                 5688999999999885    2443 589999999999999999999999999999743      578899986 3


Q ss_pred             HHhcC-------CcCcchHHHHHHHHhCCCcEEEEcCCCCchHH-HHhcCCCcceEEecC
Q 028621          145 EVTSK-------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLIGGT  196 (206)
Q Consensus       145 e~~~~-------g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~-~~l~g~~~GT~i~~~  196 (206)
                      +...+       |.+..|++++..+.+...++++++...|++|. ++++.++.||+|+..
T Consensus       191 e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g  250 (398)
T PRK04531        191 EYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRRG  250 (398)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEecC
Confidence            44432       23334999999988654468888888899987 678888899999874

>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]

Probab=99.85  E-value=2.1e-20  Score=150.55  Aligned_cols=148  Identities=22%  Similarity=0.361  Sum_probs=116.5

Q ss_pred             HHHHHhCCCCceE--ecccccccccch-h--HHHHHHHHhhCCCEEEEeCCC-----CCCCCC---cHHHHHHHHHhcCC
Q 028621           46 QATMESIGIPTRV--QTAFRMSEVAEP-Y--IRRRAVRHLEKGRVVIFAAGT-----GNPFFT---TDTAAALRCAEINA  112 (206)
Q Consensus        46 ~~~l~~~gi~a~~--l~~~~~~~v~~~-~--~~~~l~~~l~~g~ipvi~g~~-----g~~~~~---sD~~A~~lA~~l~A  112 (206)
                      ..++.++|+.+..  ++-.|+  .++. +  ...++.++|..|.|||++.++     ..++.+   ||++|+.+|.+++|
T Consensus       105 e~lF~Qy~~~iAQvLvT~~Di--~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D~~dNDsLsA~laaei~A  182 (285)
T KOG1154|consen  105 ETLFTQYGITIAQVLVTRNDI--LDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFGDSSDNDSLAAILAAEIKA  182 (285)
T ss_pred             HHHHHHhccchheeeecCcch--hhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccCCCCcccHHHHHHHHHhcc
Confidence            4457778877654  222222  1111 1  247899999999999999863     245666   99999999999999


Q ss_pred             cEEEEeeccCccccCCCCCCCCCcccccccHHHHh---------cCCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHH
Q 028621          113 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT---------SKDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIA  181 (206)
Q Consensus       113 ~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~---------~~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~  181 (206)
                      |.|+++|||||+|+.+|... ..++|+..+..+-.         +.|+++|  |+.||..|...|++++|++|..|++|.
T Consensus       183 DlLilLsDVdglYt~PPd~~-~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~~Gv~viI~~g~~p~~I~  261 (285)
T KOG1154|consen  183 DLLILLSDVDGLYTGPPDAD-PSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALNAGVSVIITNGDAPENIT  261 (285)
T ss_pred             CEEEEEecccccccCCCCCC-cceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhcCCceEEEeCCCChHHHH
Confidence            99999999999999766544 47888888775433         1256667  999999999999999999999999999


Q ss_pred             HHhcCCCcceEEecC
Q 028621          182 KAIQGERVGTLIGGT  196 (206)
Q Consensus       182 ~~l~g~~~GT~i~~~  196 (206)
                      +++.|..+||.+...
T Consensus       262 ~iv~g~kvgt~f~~~  276 (285)
T KOG1154|consen  262 DIVEGKKVGTFFEQL  276 (285)
T ss_pred             HHHhhhhhhhhhhhc
Confidence            999999999999753

>PRK09411 carbamate kinase; Reviewed

Probab=99.81  E-value=1.3e-18  Score=146.65  Aligned_cols=187  Identities=23%  Similarity=0.237  Sum_probs=130.2

Q ss_pred             ceEEEEEcCChhhhhhhhh-hcC-CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCc--e------Eeccccc-------
Q 028621            2 FQVAIVVGGGNIFRGASAA-GNS-GLDRSSADYIGMLATVMNAIFLQATMESIGIPT--R------VQTAFRM-------   64 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a--~------~l~~~~~-------   64 (206)
                      |+++|.||=|+++--...+ ..+ ..++..+|..+....-.=.++++..|+..+++-  +      .+++.|.       
T Consensus        43 ~~~vitHGNGPQVG~l~~~~~~~~~~~~~pld~~~a~sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtK  122 (297)
T PRK09411         43 YRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEK  122 (297)
T ss_pred             CCEEEEeCCccHHHHHHHHHHhhcCCCCCCchhhhhhcccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCC
Confidence            6899999999997432222 112 234455677766544445556666676666432  1      1233321       


Q ss_pred             ------------------cc-----------c-cch--h---HHHHHHHHhhCCCEEEEeCCCC----------CCCCCc
Q 028621           65 ------------------SE-----------V-AEP--Y---IRRRAVRHLEKGRVVIFAAGTG----------NPFFTT   99 (206)
Q Consensus        65 ------------------~~-----------v-~~~--~---~~~~l~~~l~~g~ipvi~g~~g----------~~~~~s   99 (206)
                                        ++           + ..|  .   ..+.++.++++|.|||.+|+.|          ..++|+
T Consensus       123 piG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDk  202 (297)
T PRK09411        123 FIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDK  202 (297)
T ss_pred             ccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCCCcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCH
Confidence                              11           0 011  0   1588999999999988765422          126999


Q ss_pred             HHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC----CcCcchHHHHHHHHhC-CCcEEEEcC
Q 028621          100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DLSVMDMTAITLCQEN-NIPVVVFNL  174 (206)
Q Consensus       100 D~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----g~~~~k~~a~~~a~~~-gi~v~I~~g  174 (206)
                      |.+|+.||.+|+||+|+|+|||||||++++  .|++++|++++.+|+.++    |.+..|+++|..+.+. +.+++|.+ 
T Consensus       203 D~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~it~~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~-  279 (297)
T PRK09411        203 DLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA-  279 (297)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCcCHHHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC-
Confidence            999999999999999999999999998753  567899999999988754    4445599999666554 56788864 


Q ss_pred             CCCchHHHHhcCCCcceEEe
Q 028621          175 NQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       175 ~~~~~l~~~l~g~~~GT~i~  194 (206)
                        ++.+.+++.|+ .||+|.
T Consensus       280 --l~~~~~~l~G~-~GT~I~  296 (297)
T PRK09411        280 --LSRIEETLAGE-AGTCIS  296 (297)
T ss_pred             --hhHHHHHHCCC-CCeEEe
Confidence              78888999998 799985

>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]

Probab=99.69  E-value=2.3e-15  Score=124.84  Aligned_cols=117  Identities=32%  Similarity=0.416  Sum_probs=96.7

Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           73 RRRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~g~~-------------~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                      .+.|+.++++|.++|..|+.|.|             .+|-|..++.||.+++||.|+++||||+||-+-.  .|+.+.++
T Consensus       174 ~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~g--kp~q~~L~  251 (312)
T COG0549         174 AEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFG--KPNQQALD  251 (312)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCC--Cccchhhc
Confidence            58899999999999988864432             4899999999999999999999999999998754  46789999


Q ss_pred             cccHHHHhcC--------CcCcchHHHHHHHHhC-CCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          140 TLTYQEVTSK--------DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       140 ~i~~~e~~~~--------g~~~~k~~a~~~a~~~-gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +++.+|+.++        |+|..|++||..-.++ |-+++|.+   .+++.++|.|+ .||.|.+
T Consensus       252 ~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~  312 (312)
T COG0549         252 RVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP  312 (312)
T ss_pred             ccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence            9999996642        5666699998655544 56788887   67888999998 6999964

>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]

Probab=98.48  E-value=3.6e-07  Score=81.50  Aligned_cols=186  Identities=14%  Similarity=0.164  Sum_probs=109.3

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhh--------hHHHH----HHHHHHHHHHHHHHHhCCCCceEeccccc-----
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA--------DYIGM----LATVMNAIFLQATMESIGIPTRVQTAFRM-----   64 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~--------~~~~~----~~~~~~~~ll~~~l~~~gi~a~~l~~~~~-----   64 (206)
                      .++|||||+|+++++....  .++.+.+.        +.+..    ...+.|..++. .|++.|-.+++.++...     
T Consensus       126 l~pIvv~g~~~qin~~l~~--~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv~-nL~~~g~~ar~~s~g~~v~~~f  202 (520)
T KOG2436|consen  126 LRPIVVPGTQPQINRLLAE--RGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLVI-NLSQLGTRARPSSSGVRVGNFF  202 (520)
T ss_pred             ceEEEecCccHHHHHHHHH--cCCCcccccceecccHHHHHHhhhcchhhhhhHHHH-HHHHhhceecccccccccccee
Confidence            4789999999999996533  35554432        11111    22245555666 47888877776555421     


Q ss_pred             -------------ccccchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 028621           65 -------------SEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGV  124 (206)
Q Consensus        65 -------------~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv  124 (206)
                                   +.+++.+  .-+.+..+++.|.+|++...    .|+. .++.|..|..+|..|+|+++++++|+.-+
T Consensus       203 ~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~  282 (520)
T KOG2436|consen  203 PADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELALALGPDKLILLMDKGRI  282 (520)
T ss_pred             ecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHhccCcceeEEecccccc
Confidence                         1111111  13788889999999998764    3443 48999999999999999999999998434


Q ss_pred             ccCCCCCCCCCcccccccHHHHhc----C---Cc-CcchHHHHHHHHhC--CC-cEEEEcCCCCchH-HHHhcCCCcceE
Q 028621          125 YDDNPRRNPNARLLDTLTYQEVTS----K---DL-SVMDMTAITLCQEN--NI-PVVVFNLNQPGNI-AKAIQGERVGTL  192 (206)
Q Consensus       125 ~~~dP~~~~~a~~i~~i~~~e~~~----~---g~-~~~k~~a~~~a~~~--gi-~v~I~~g~~~~~l-~~~l~g~~~GT~  192 (206)
                      ...++      +.++.+...|...    .   .. -.-++.+..-....  +. +-+.+....+.++ .+.+..++.||+
T Consensus       283 l~e~g------e~~S~l~l~~e~~~l~k~~qq~~~a~~~v~aV~~~~~~~~p~~~s~~i~~~t~~n~~~~~~te~G~~t~  356 (520)
T KOG2436|consen  283 LKENG------EDISSLILQEEDAGLRKPSQQKNIAANNVKAVKDGIDSSLPRPSSYNIAITTQQNLIKELFTEKGAGTL  356 (520)
T ss_pred             cccCc------ccccccccchhHhhhhhhhhhcccccccchhhhhheeeccCcCCCCCcceeecccccceeeccCCCCcc
Confidence            44444      3444444433221    1   10 01122322222211  11 1123333334444 467888888999


Q ss_pred             EecC
Q 028621          193 IGGT  196 (206)
Q Consensus       193 i~~~  196 (206)
                      |.+.
T Consensus       357 ~~~g  360 (520)
T KOG2436|consen  357 ISGG  360 (520)
T ss_pred             ccCc
Confidence            9863

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=84.74  E-value=1.3  Score=34.44  Aligned_cols=57  Identities=25%  Similarity=0.290  Sum_probs=34.3

Q ss_pred             EEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHH
Q 028621          116 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA  181 (206)
Q Consensus       116 i~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~  181 (206)
                      ++.+||||++|+.       ++.=.-.-+|+..+.  +.+=...+..+++|+++-|+.|++...+.
T Consensus        10 Lli~DVDGvLTDG-------~ly~~~~Gee~KaFn--v~DG~Gik~l~~~Gi~vAIITGr~s~ive   66 (170)
T COG1778          10 LLILDVDGVLTDG-------KLYYDENGEEIKAFN--VRDGHGIKLLLKSGIKVAIITGRDSPIVE   66 (170)
T ss_pred             EEEEeccceeecC-------eEEEcCCCceeeeee--ccCcHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence            4568999999852       332222222222221  12334456677889998889898877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
3ek5_A	243	Unique Gtp-Binding Pocket And Allostery Of Ump Kina		3e-59
3nwy_A	281	Structure And Allosteric Regulation Of The Uridine		1e-58
1z9d_A	252	Crystal Structure Of A Putative Uridylate Kinase (U		1e-52
4a7w_A	240	Crystal Structure Of Uridylate Kinase From Helicoba		8e-52
1ybd_A	239	Crystal Structure Analysis Of Uridylate Kinase From		5e-51
2a1f_A	247	Crystal Structure Of Uridylate Kinase Length = 247		2e-48
2bnd_A	241	The Structure Of E.Coli Ump Kinase In Complex With		7e-48
2bne_A	241	The Structure Of E. Coli Ump Kinase In Complex With		9e-48
2bnf_A	241	The Structure Of E. Coli Ump Kinase In Complex With		2e-43
2jjx_A	255	The Crystal Structure Of Ump Kinase From Bacillus A		4e-41
2va1_A	256	Crystal Structure Of Ump Kinase From Ureaplasma Par		3e-39
2ij9_A	219	Crystal Structure Of Uridylate Kinase From Archaeog		5e-17
2brx_A	244	Ump Kinase From Pyrococcus Furiosus Without Ligands		1e-11
2ji5_A	227	Structure Of Ump Kinase From Pyrococcus Furiosus Co		2e-11
2j4j_A	226	Crystal Structure Of Uridylate Kinase From Sulfolob		6e-10
3ll9_A	269	X-Ray Structures Of Isopentenyl Phosphate Kinase Le		2e-07
2bmu_A	226	Ump Kinase From Pyrococcus Furiosus Complexed With		3e-07
2bri_A	225	Ump Kinase From Pyrococcus Furiosus Complexed With		3e-07
4f6t_B	268	The Crystal Structure Of The Molybdenum Storage Pro		2e-06
2ogx_B	270	The Crystal Structure Of The Molybdenum Storage Pro		5e-06
2hmf_A	469	Structure Of A Threonine Sensitive Aspartokinase Fr		2e-04
3c1n_C	473	Crystal Structure Of Allosteric Inhibition Threonin		2e-04

>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243

Iteration: 1
 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 101/193 (52%), Positives = 147/193 (76%), Gaps = 1/193 (0%)
Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           QVA+V+GGGNIFRGA  A  SG+DR + D++GMLATV+NA+ +Q  +E +G   RV +A 
Sbjct: 50  QVALVIGGGNIFRGAGLAA-SGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAI 108
Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
           ++++V E +IRRRA+RHLEKGR+ IFAAGTGNPFFTTD+ AALR  EI A+++LKAT VD
Sbjct: 109 KINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVD 168
Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P+++ +A   D+LTY EV  + L VMD  A  L +++++P+ +F +++PG + +
Sbjct: 169 GVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLR 228
Query: 183 AIQGERVGTLIGG 195
            + G ++GTL+ G
Sbjct: 229 ILHGAQIGTLVQG 241

>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine Monophosphate Kinase From Mycobacterium Tuberculosis Length = 281

Iteration: 1
 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 142/191 (74%), Gaps = 1/191 (0%)
Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           Q+A+V+GGGN FRGA      G++R+ +DY+GML TVMN++ LQ  +E  GI TRVQTA 
Sbjct: 90  QIAVVIGGGNFFRGAQLQ-QLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAI 148
Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M +VAEPY+  RAVRHLEKGRVVIF AG G P+F+TDT AA R  EI A+VVL A  VD
Sbjct: 149 TMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVD 208
Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GV+ ++PR NP A LL  ++++EV  + L V D TA +LC +N +P++VFNL   GNIA+
Sbjct: 209 GVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIAR 268
Query: 183 AIQGERVGTLI 193
           A++GE++GTL+
Sbjct: 269 AVRGEKIGTLV 279

>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase (Ump-Kinase) From Streptococcus Pyogenes Length = 252

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 135/192 (70%), Gaps = 2/192 (1%)
Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           Q+A+V+GGGN++RG  AA ++G DR  ADY G L TV NA+    +++  G+ TRVQTA 
Sbjct: 48  QIALVIGGGNLWRGEPAA-DAGXDRVQADYTGXLGTVXNALVXADSLQHYGVDTRVQTAI 106
Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-V 121
               VAEPYIR RA+RHLEK R+V+F AG G+P+F+TDT AALR AEI A+ +L A N V
Sbjct: 107 PXQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILXAKNGV 166
Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGVY+ +P+++ NA   D LT+ EV  + L + D TA TL  +N+I +VVFN N+ GNI 
Sbjct: 167 DGVYNADPKKDANAVKFDELTHGEVIKRGLKIXDATASTLSXDNDIDLVVFNXNEAGNIQ 226
Query: 182 KAIQGERVGTLI 193
           + + GE +GT +
Sbjct: 227 RVVFGEHIGTTV 238

>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter Pylori Length = 240

Iteration: 1
 Score =  199 bits (507), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 128/171 (74%)
Query: 18  SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAV 77
           SAA    + R+S DY+GMLATV+NA+ +Q  +E IG+ TRVQ+A  + E+ E YI R+A+
Sbjct: 63  SAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAI 122
Query: 78  RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL 137
           RHLEKGRVVIF AGTGNPFFTTDTAA LR  EI +++++KAT VDG+YD +P +  +A+ 
Sbjct: 123 RHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKK 182
Query: 138 LDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER 188
           LDTL+Y +    D+ VMD TAI+L ++N +P+VV N+ + GN+ + I+ ++
Sbjct: 183 LDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQ 233

>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From Neisseria Meningitidis Length = 239

Iteration: 1
 Score =  196 bits (499), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 96/182 (52%), Positives = 130/182 (71%), Gaps = 1/182 (0%)
Query: 12  NIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY 71
           NIFRG SA   S  DR++ADY G  ATV NA+ L+   E++GI  RVQ+A    ++AE Y
Sbjct: 57  NIFRGVSAQAGS-XDRATADYXGXXATVXNALALKDAFETLGIKARVQSALSXQQIAETY 115
Query: 72  IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRR 131
            R +A+++LE+G+VVIFAAGTGNPFFTTDTAAALR AE N +V LKATNVDGVY  +P++
Sbjct: 116 ARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEXNCDVXLKATNVDGVYTADPKK 175
Query: 132 NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 191
           +P+A   +T+T+ E   K+L V D TA  LC+E  + +VVF + + G++ + I GE  GT
Sbjct: 176 DPSATRYETITFDEALLKNLKVXDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGT 235
Query: 192 LI 193
           L+
Sbjct: 236 LV 237

>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase Length = 247

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +V++V+GGGN+FRGA  A  +G++R   D++GMLATVMN + ++ ++    +  ++ +AF
Sbjct: 49  EVSVVLGGGNLFRGAKLA-KAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF 107
Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
           +++ + + Y    A++ L + RVVIF+AGTGNPFFTTD+ A LR  EI A+VVLKAT VD
Sbjct: 108 QLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVD 167
Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P +NP+A+L   L+Y EV  K+L VMD++A TL +++ +P+ VFN+ +PG + +
Sbjct: 168 GVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQ 227
Query: 183 AIQGERVGTLI 193
            + G   GT I
Sbjct: 228 VVTGTEEGTTI 238

>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp Length = 241

Iteration: 1
 Score =  186 bits (472), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 130/192 (67%), Gaps = 1/192 (0%)
Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
            QV +V+GGGN+FRGA  A  +G++R   D++GMLATVMN + ++  +    +  R+ +A
Sbjct: 49  IQVGVVIGGGNLFRGAGLA-KAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSA 107
Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
             ++ V + Y    A+  L   RVVI +AGTGNPFFTTD+AA LR  EI A VVLKAT V
Sbjct: 108 IPLNAVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKV 167
Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGV+  +P ++P A + + LTY EV  K+L VMD+ A TL +++ +P+ VFN+N+PG + 
Sbjct: 168 DGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALR 227
Query: 182 KAIQGERVGTLI 193
           + + GE+ GTLI
Sbjct: 228 RVVMGEKEGTLI 239

>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump Length = 241

Iteration: 1
 Score =  186 bits (471), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 130/192 (67%), Gaps = 1/192 (0%)
Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
            QV +V+GGGN+FRGA  A  +G++R   D++GMLATVMN + ++  +    +  R+ +A
Sbjct: 49  IQVGVVIGGGNLFRGAGLA-KAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSA 107
Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
             ++ V + Y    A+  L   RVVI +AGTGNPFFTTD+AA LR  EI A VVLKAT V
Sbjct: 108 IPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKV 167
Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGV+  +P ++P A + + LTY EV  K+L VMD+ A TL +++ +P+ VFN+N+PG + 
Sbjct: 168 DGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALR 227
Query: 182 KAIQGERVGTLI 193
           + + GE+ GTLI
Sbjct: 228 RVVMGEKEGTLI 239

>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp Length = 241

Iteration: 1
 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 122/192 (63%), Gaps = 1/192 (0%)
Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
            QV +V+GGGN+FRGA  A  +G +R   D+ G LATV N +  +  +    +  R+ +A
Sbjct: 49  IQVGVVIGGGNLFRGAGLA-KAGXNRVVGDHXGXLATVXNGLAXRDALHRAYVNARLXSA 107
Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
             ++ V + Y    A+  L   RVVI +AGTGNPFFTTD+AA LR  EI A VVLKAT V
Sbjct: 108 IPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKV 167
Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGV+  +P ++P A   + LTY EV  K+L V D+ A TL +++ +P+ VFN N+PG + 
Sbjct: 168 DGVFTADPAKDPTATXYEQLTYSEVLEKELKVXDLAAFTLARDHKLPIRVFNXNKPGALR 227
Query: 182 KAIQGERVGTLI 193
           + + GE+ GTLI
Sbjct: 228 RVVXGEKEGTLI 239

>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus Anthracis (Ba1797) Length = 255

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 121/194 (62%), Gaps = 3/194 (1%)
Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQT 60
            +V+IV+GGGNIFRG   A   G+DR  AD IG L T++N++ L+  + S      RV T
Sbjct: 52  IEVSIVIGGGNIFRG-HLAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMT 110
Query: 61  AFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 120
           +   + VAEPYIR RAV HL+ G +VIF  G G PF TTD  +  R  E+N++ +L A  
Sbjct: 111 SIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQ 170
Query: 121 -VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 179
            VDGV+  +P+ N +A++   L Y +V  +++ VMD  A+ L ++ N+P  VFN ++PG 
Sbjct: 171 GVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGV 230
Query: 180 IAKAIQGERVGTLI 193
           + +   GE VGTLI
Sbjct: 231 MRRICLGEHVGTLI 244

>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum Length = 256

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           + V+IV+GGGNI+RG S A    +DR+ AD +GM+AT++N + L+  +  + + T V +A
Sbjct: 63  YIVSIVLGGGNIWRG-SIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSA 121
Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN- 120
            +  ++          + +EK +V+IF AGTG P+FTTD+ AA+R AE  + ++L   N 
Sbjct: 122 IKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNG 181
Query: 121 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNI 180
           VDGVYD +P+ NPNA+  + +T+    +++L VMD TA+ LCQENNI ++VFN+++P  I
Sbjct: 182 VDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAI 241
Query: 181 AKAIQGERVGTLI 193
              ++ +   T++
Sbjct: 242 VDVLEKKNKYTIV 254

>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus Fulgidus Length = 219

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 30/204 (14%)
Query: 3   QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIG--IPTRVQ 59
           QV +VVGGG + R    +A   G   +  DYIG+ AT +NA+ L + + S    +P    
Sbjct: 34  QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFM 93
Query: 60  TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 119
            A  +S++                RVV+   G   P  TTD  AAL    I A+V + AT
Sbjct: 94  EAEELSKLY---------------RVVVM--GGTFPGHTTDATAALLAEFIKADVFINAT 136
Query: 120 NVDGVYDDNPRRNPNARLLDTLTYQ---EVTSKDLS------VMDMTAITLCQENNIPVV 170
           NVDGVY  +P+ + +A   D L+ Q   E+ S+  +      V+D+ A  + + + I   
Sbjct: 137 NVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTY 196
Query: 171 VFNLNQPGNIAKAIQGERVGTLIG 194
           V  L  P NI KA++GE VGT+I 
Sbjct: 197 VI-LGTPENIMKAVKGEAVGTVIA 219

>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands Length = 244

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 24/201 (11%)
Query: 3   QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           +VA+VVGGG + R     A       +  D+IG+  T  NA+ L A +     P      
Sbjct: 56  EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPV----- 110
Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
                V E +        L+K    I   G  +P  TTD  AAL    + A++++  TNV
Sbjct: 111 -----VVEDFWEAWKAVQLKK----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNV 161
Query: 122 DGVYDDNPRRNPNARLLDTLTYQ---EVTSKDL------SVMDMTAITLCQENNIPVVVF 172
           DGVY  +P+++P A+ +  +  +   E+  K +      SV+D  A  +   + I  +V 
Sbjct: 162 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 221
Query: 173 NLNQPGNIAKAIQGERVGTLI 193
                 ++ + I+G+  GT I
Sbjct: 222 GKEDAKDLFRVIKGDHNGTTI 242

>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed With Utp Length = 227

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 3   QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           +VA+VVGGG + R     A       +  D+IG+  T  NA+ L A +     P      
Sbjct: 39  EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPV----- 93
Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
                V E +        L+K    I   G  +P  TTD  AAL    + A++++  TNV
Sbjct: 94  -----VVEDFWEAWKAVQLKK----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNV 144
Query: 122 DGVYDDNPRRNPNARLLDTLTYQ---EVTSKDL------SVMDMTAITLCQENNIPVVVF 172
           DGVY  +P+++P A+ +  +  +   E+  K +      SV+D  A  +     I  +V 
Sbjct: 145 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARTGIKTIVI 204
Query: 173 NLNQPGNIAKAIQGERVGTLI 193
                 ++ + I+G+  GT I
Sbjct: 205 GKEDAKDLFRVIKGDHNGTTI 225

>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus Solfataricus In Complex With Ump And Amppcp To 2.1 Angstrom Resolution Length = 226

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 25/203 (12%)
Query: 2   FQVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT 60
           F+V IV GGG+  R     A   G+  +  D +G+ A+ +NA  +  +++ +        
Sbjct: 35  FRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLA------- 87
Query: 61  AFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 120
              + +  E +I+  +      G+VV+   G   P  +T   AAL     +++ ++ ATN
Sbjct: 88  YMHVPQSLEEFIQDWS-----HGKVVV--TGGFQPGQSTAAVAALVAEASSSKTLVVATN 140
Query: 121 VDGVYDDNPRRNPNARLLDTLTYQE----------VTSKDLSVMDMTAITLCQENNIPVV 170
           VDGVY+ +PR   + +L+  LT Q+          V +    ++D  AI + + + I V+
Sbjct: 141 VDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVI 200
Query: 171 VFNLNQPGNIAKAIQGERVGTLI 193
           V N  +   I   ++GE V ++I
Sbjct: 201 VMNYRKLNRIIDILKGEEVSSII 223

>pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase Length = 269

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 110 INAEVVLKATNVDGVYDDNPRRNPNARLLDTL-TYQEVTSKDLSV-MDMTA--------I 159
           +  E V+  T+VDGVY  NP+++P+ARLLD + +  ++ S D ++  D+T         +
Sbjct: 171 LXPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGXVGKIREL 230
Query: 160 TLCQENNIPVVVFNLNQPGNIAKAIQGERV-GTLIGG 195
            L  E  +   + N   PGNI +A+ GE V GT I G
Sbjct: 231 LLLAEKGVESEIINAAVPGNIERALLGEEVRGTRITG 267

>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its Substrate Ump And Its Substrate Analog Amppnp Length = 226

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 3   QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           +VA+VVGGG + R     A       +  D+IG+  T  NA  L A +     P      
Sbjct: 38  EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAXLLIAALREKAYPV----- 92
Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
                V E +        L+K    I   G  +P  TTD  AAL    + A++++  TNV
Sbjct: 93  -----VVEDFWEAWKAVQLKK----IPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNV 143
Query: 122 DGVYDDNPRRNPNARLLDTLTYQ---EVTSKDL------SVMDMTAITLCQENNIPVVVF 172
           DGVY  +P+++P A+ +     +   E+  K +      SV+D  A  +   + I  +V 
Sbjct: 144 DGVYTADPKKDPTAKKIKKXKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 203
Query: 173 NLNQPGNIAKAIQGERVGTLI 193
                 ++ + I+G+  GT I
Sbjct: 204 GKEDAKDLFRVIKGDHNGTTI 224

>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its Substrate Analog Amppnp Length = 225

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 24/201 (11%)
Query: 3   QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           +VA+VVGGG + R     A       +  D+IG+  T  NA  L A +     P      
Sbjct: 37  EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAXLLIAALREKAYPV----- 91
Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
                V E +        L+K    I   G  +P  TTD  AAL    + A++++  TNV
Sbjct: 92  -----VVEDFWEAWKAVQLKK----IPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNV 142
Query: 122 DGVYDDNPRRNPNA---------RLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVF 172
           DGVY  +P+++P A          LL+ +      +   SV+D  A  +   + I  +V 
Sbjct: 143 DGVYTADPKKDPTAKKIKKXKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 202
Query: 173 NLNQPGNIAKAIQGERVGTLI 193
                 ++ + I+G+  GT I
Sbjct: 203 GKEDAKDLFRVIKGDHNGTTI 223

>pdb|4F6T|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein (Mosto) From Azotobacter Vinelandii Loaded With Various Polyoxometalates Length = 268

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 95  PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 152
           P + TD    L   +   + ++   + DG+Y  NP+ + +A  +  ++  E+ +K L  S
Sbjct: 163 PPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDS 222
Query: 153 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
           +++   + L Q  ++   V V N   PGN+ +A+ GE VGT+I
Sbjct: 223 ILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 265

>pdb|2OGX|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein From Azotobacter Vinelandii Loaded With Polyoxotungstates (Wsto) Length = 270

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 95  PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 152
           P + TD    L   +   +  +   + DG+Y  NP+ + +A  +  ++  E  +K L  S
Sbjct: 165 PPYRTDAGCFLLAEQFGCKQXIFVKDEDGLYTANPKTSKDATFIPRISVDEXKAKGLHDS 224
Query: 153 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
           +++   + L Q  ++   V V N   PGN+ +A+ GE VGT+I
Sbjct: 225 ILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 267

>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINA 112
           F  + V    ++ R +  L++G + +   F   T   + TT      D +AAL    ++A
Sbjct: 163 FGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDA 222
Query: 113 EVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPV 169
           +++   T+V GVY  +PR  P AR +  L+Y    E+      V+    I    E  IP+
Sbjct: 223 DIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPI 282
Query: 170 VVFNLNQPGNIAKAIQGERVGTLI 193
           +V N  +P         E  GTLI
Sbjct: 283 LVKNTFEP---------ESEGTLI 297

>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINA 112
           F  + V    ++ R +  L++G + +   F   T   + TT      D +AAL    ++A
Sbjct: 164 FGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDA 223
Query: 113 EVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPV 169
           +++   T+V GVY  +PR  P AR +  L+Y    E+      V+    I    E  IP+
Sbjct: 224 DIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPI 283
Query: 170 VVFNLNQPGNIAKAIQGERVGTLI 193
           +V N  +P         E  GTLI
Sbjct: 284 LVKNTFEP---------ESEGTLI 298

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	1e-93
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	9e-88
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	4e-87
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	1e-86
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	3e-86
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	3e-86
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	1e-84
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	8e-84
2ij9_A	219	Uridylate kinase; structural genomics, protein str	1e-83
3nwy_A	281	Uridylate kinase; allosterically activated form, A	4e-83
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	2e-82
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	4e-81
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	9e-69
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	1e-41
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	1e-16
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	4e-15
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	9e-13
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	1e-12
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	2e-11
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	6e-11
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	2e-10
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	1e-09
2ako_A	251	Glutamate 5-kinase; structural genomics, PSI, prot	2e-08
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	4e-07
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	8e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-05
1e19_A	314	Carbamate kinase-like carbamoylphosphate synthetas	6e-05
2we5_A	310	Carbamate kinase 1; arginine catabolism, arginine	5e-04
2e9y_A	316	Carbamate kinase; transferase, structural genomics	6e-04
3kzf_A	317	Carbamate kinase; arginine dihydrolase pathway, gi	8e-04

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270

 Score =  273 bits (700), Expect = 1e-93
 Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 6/200 (3%)

Query: 3   QVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           ++ I  G G   R   +     GL       +G      NA  L   +   GIP      
Sbjct: 71  KLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNAAMLGQLLAKHGIPVVGGAG 130

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGN-PFFTTDTAAALRCAEINAEVVLKATN 120
                ++   +       +   ++ +  A  G  P + TD    L   +   + ++   +
Sbjct: 131 LSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKD 190

Query: 121 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--SVMDMTAITLCQ--ENNIPVVVFNLNQ 176
            DG+Y  NP+ + +A  +  ++  E+ +K L  S+++   + L Q  ++   V V N   
Sbjct: 191 EDGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLV 250

Query: 177 PGNIAKAIQGERVGTLIGGT 196
           PGN+ +A+ GE VGT+I  +
Sbjct: 251 PGNLTRALAGEHVGTIITAS 270

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244

 Score =  257 bits (659), Expect = 9e-88
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 24/201 (11%)

Query: 3   QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           +VA+VVGGG + R     A       +  D+IG+  T  NA+ L A +     P      
Sbjct: 56  EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPV----- 110

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
                V E +        L+K    I   G  +P  TTD  AAL    + A++++  TNV
Sbjct: 111 -----VVEDFWEAWKAVQLKK----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNV 161

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEV---------TSKDLSVMDMTAITLCQENNIPVVVF 172
           DGVY  +P+++P A+ +  +  +E+          +   SV+D  A  +   + I  +V 
Sbjct: 162 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 221

Query: 173 NLNQPGNIAKAIQGERVGTLI 193
                 ++ + I+G+  GT I
Sbjct: 222 GKEDAKDLFRVIKGDHNGTTI 242

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240

 Score =  255 bits (654), Expect = 4e-87
 Identities = 101/192 (52%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +V IV+GGGNI RG SAA    + R+S DY+GMLATV+NA+ +Q  +E IG+ TRVQ+A 
Sbjct: 48  EVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAI 107

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            + E+ E YI R+A+RHLEKGRVVIF AGTGNPFFTTDTAA LR  EI +++++KAT VD
Sbjct: 108 EIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVD 167

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           G+YD +P +  +A+ LDTL+Y +    D+ VMD TAI+L ++N +P+VV N+ + GN+ +
Sbjct: 168 GIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQ 227

Query: 183 AIQGER-VGTLI 193
            I+ ++ V +++
Sbjct: 228 VIKHQQGVFSMV 239

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226

 Score =  253 bits (649), Expect = 1e-86
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 25/202 (12%)

Query: 3   QVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           +V IV GGG+  R     A   G+  +  D +G+ A+ +NA  +  +++ +         
Sbjct: 36  RVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHV---- 91

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
                   P      ++    G+VV+   G   P  +T   AAL     +++ ++ ATNV
Sbjct: 92  --------PQSLEEFIQDWSHGKVVV--TGGFQPGQSTAAVAALVAEASSSKTLVVATNV 141

Query: 122 DGVYDDNPRRNPNARLLDTLTYQE----------VTSKDLSVMDMTAITLCQENNIPVVV 171
           DGVY+ +PR   + +L+  LT Q+          V +    ++D  AI + + + I V+V
Sbjct: 142 DGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIV 201

Query: 172 FNLNQPGNIAKAIQGERVGTLI 193
            N  +   I   ++GE V ++I
Sbjct: 202 MNYRKLNRIIDILKGEEVSSII 223

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247

 Score =  254 bits (649), Expect = 3e-86
 Identities = 88/192 (45%), Positives = 136/192 (70%), Gaps = 1/192 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           +V++V+GGGN+FRGA  A  +G++R   D++GMLATVMN + ++ ++    +  ++ +AF
Sbjct: 49  EVSVVLGGGNLFRGAKLA-KAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF 107

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
           +++ + + Y    A++ L + RVVIF+AGTGNPFFTTD+ A LR  EI A+VVLKAT VD
Sbjct: 108 QLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVD 167

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P +NP+A+L   L+Y EV  K+L VMD++A TL +++ +P+ VFN+ +PG + +
Sbjct: 168 GVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQ 227

Query: 183 AIQGERVGTLIG 194
            + G   GT I 
Sbjct: 228 VVTGTEEGTTIC 239

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243

 Score =  254 bits (649), Expect = 3e-86
 Identities = 101/193 (52%), Positives = 147/193 (76%), Gaps = 1/193 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           QVA+V+GGGNIFRGA  A  SG+DR + D++GMLATV+NA+ +Q  +E +G   RV +A 
Sbjct: 50  QVALVIGGGNIFRGAGLAA-SGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAI 108

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
           ++++V E +IRRRA+RHLEKGR+ IFAAGTGNPFFTTD+ AALR  EI A+++LKAT VD
Sbjct: 109 KINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVD 168

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVYD +P+++ +A   D+LTY EV  + L VMD  A  L +++++P+ +F +++PG + +
Sbjct: 169 GVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLR 228

Query: 183 AIQGERVGTLIGG 195
            + G ++GTL+ G
Sbjct: 229 ILHGAQIGTLVQG 241

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256

 Score =  249 bits (638), Expect = 1e-84
 Identities = 76/192 (39%), Positives = 125/192 (65%), Gaps = 2/192 (1%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
            V+IV+GGGNI+RG+ A     +DR+ AD +GM+AT++N + L+  +  + + T V +A 
Sbjct: 64  IVSIVLGGGNIWRGSIAK-ELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAI 122

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-V 121
           +  ++          + +EK +V+IF AGTG P+FTTD+ AA+R AE  + ++L   N V
Sbjct: 123 KCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGV 182

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGVYD +P+ NPNA+  + +T+    +++L VMD TA+ LCQENNI ++VFN+++P  I 
Sbjct: 183 DGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIV 242

Query: 182 KAIQGERVGTLI 193
             ++ +   T++
Sbjct: 243 DVLEKKNKYTIV 254

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239

 Score =  247 bits (632), Expect = 8e-84
 Identities = 107/191 (56%), Positives = 146/191 (76%), Gaps = 1/191 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           QV IVVGGGNIFRG SA     +DR++ADY+GM+ATVMNA+ L+   E++GI  RVQ+A 
Sbjct: 48  QVGIVVGGGNIFRGVSAQ-AGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSAL 106

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M ++AE Y R +A+++LE+G+VVIFAAGTGNPFFTTDTAAALR AE+N +V+LKATNVD
Sbjct: 107 SMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVD 166

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVY  +P+++P+A   +T+T+ E   K+L VMD TA  LC+E  + +VVF + + G++ +
Sbjct: 167 GVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKR 226

Query: 183 AIQGERVGTLI 193
            I GE  GTL+
Sbjct: 227 VITGEDEGTLV 237

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219

 Score =  246 bits (630), Expect = 1e-83
 Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 26/202 (12%)

Query: 3   QVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           QV +VVGGG + R    +A   G   +  DYIG+ AT +NA+ L              +A
Sbjct: 34  QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLI-------------SA 80

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
              +    P     A    +  RVV+   G   P  TTD  AAL    I A+V + ATNV
Sbjct: 81  IPSAAKKVPVDFMEAEELSKLYRVVVM--GGTFPGHTTDATAALLAEFIKADVFINATNV 138

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDL---------SVMDMTAITLCQENNIPVVVF 172
           DGVY  +P+ + +A   D L+ Q++               V+D+ A  + + + I   V 
Sbjct: 139 DGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVI 198

Query: 173 NLNQPGNIAKAIQGERVGTLIG 194
               P NI KA++GE VGT+I 
Sbjct: 199 L-GTPENIMKAVKGEAVGTVIA 219

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281

 Score =  247 bits (631), Expect = 4e-83
 Identities = 107/191 (56%), Positives = 142/191 (74%), Gaps = 1/191 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           Q+A+V+GGGN FRGA      G++R+ +DY+GML TVMN++ LQ  +E  GI TRVQTA 
Sbjct: 90  QIAVVIGGGNFFRGAQLQ-QLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAI 148

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M +VAEPY+  RAVRHLEKGRVVIF AG G P+F+TDT AA R  EI A+VVL A  VD
Sbjct: 149 TMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVD 208

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GV+ ++PR NP A LL  ++++EV  + L V D TA +LC +N +P++VFNL   GNIA+
Sbjct: 209 GVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIAR 268

Query: 183 AIQGERVGTLI 193
           A++GE++GTL+
Sbjct: 269 AVRGEKIGTLV 279

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252

 Score =  244 bits (624), Expect = 2e-82
 Identities = 103/194 (53%), Positives = 142/194 (73%), Gaps = 2/194 (1%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           Q+A+V+GGGN++RG  AA ++G+DR  ADY GML TVMNA+ +  +++  G+ TRVQTA 
Sbjct: 48  QIALVIGGGNLWRGEPAA-DAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAI 106

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-V 121
            M  VAEPYIR RA+RHLEK R+V+F AG G+P+F+TDT AALR AEI A+ +L A N V
Sbjct: 107 PMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGV 166

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
           DGVY+ +P+++ NA   D LT+ EV  + L +MD TA TL  +N+I +VVFN+N+ GNI 
Sbjct: 167 DGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQ 226

Query: 182 KAIQGERVGTLIGG 195
           + + GE +GT +  
Sbjct: 227 RVVFGEHIGTTVSN 240

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255

 Score =  240 bits (615), Expect = 4e-81
 Identities = 83/193 (43%), Positives = 119/193 (61%), Gaps = 3/193 (1%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQ-ATMESIGIPTRVQTA 61
           +V+IV+GGGNIFRG  A    G+DR  AD IG L T++N++ L+           RV T+
Sbjct: 53  EVSIVIGGGNIFRGHLAE-EWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTS 111

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN- 120
              + VAEPYIR RAV HL+ G +VIF  G G PF TTD  +  R  E+N++ +L A   
Sbjct: 112 IPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQG 171

Query: 121 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNI 180
           VDGV+  +P+ N +A++   L Y +V  +++ VMD  A+ L ++ N+P  VFN ++PG +
Sbjct: 172 VDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVM 231

Query: 181 AKAIQGERVGTLI 193
            +   GE VGTLI
Sbjct: 232 RRICLGEHVGTLI 244

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276

 Score =  210 bits (536), Expect = 9e-69
 Identities = 52/210 (24%), Positives = 78/210 (37%), Gaps = 32/210 (15%)

Query: 3   QVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           ++ I+ G G   R   + G + GL   S   +       N   L A + S G+       
Sbjct: 73  RLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSY----- 127

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAA----------GTGNPFFTTDTAAALRCAEIN 111
                V  P +  +   HL   R V+ +A          G+  P    DT A L      
Sbjct: 128 -----VEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFG 182

Query: 112 AEVVLKATNVDGVYDDNPRR--NPNARLLDTLTYQEVTSK------DLSVMDMTAITLCQ 163
           A  +    NVDG+Y  +P       AR L   +  ++         D +++D+ A     
Sbjct: 183 AAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARH- 241

Query: 164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
                V V N   PG +  A++GE VGTLI
Sbjct: 242 --IERVQVVNGLVPGRLTAALRGEHVGTLI 269

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266

 Score =  140 bits (355), Expect = 1e-41
 Identities = 45/215 (20%), Positives = 79/215 (36%), Gaps = 28/215 (13%)

Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM---------NAIFLQATMESI 52
            ++ +V GGG       A     ++     +I M              N I +       
Sbjct: 53  IKLILVHGGGAFGHPV-AKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYD 111

Query: 53  GIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG-------TGNPFFTTDTAAAL 105
                +Q +  +    +      A++ + K  +V    G        G    + D     
Sbjct: 112 IPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPY 171

Query: 106 RCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS--KDLSVMDMTA----- 158
              E+ A+++L AT+VDGV  DN       + +D     ++ +     + +D+T      
Sbjct: 172 LANELKADLILYATDVDGVLIDNKP----IKRIDKNNIYKILNYLSGSNSIDVTGGMKYK 227

Query: 159 ITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
           I + ++N     VFN N+  NI KA+ GE  GT I
Sbjct: 228 IEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEI 262

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT-- 157
           D   A     +  +V +  T+VDG+Y  +P+RNP+A LL  +      + D    D+T  
Sbjct: 148 DDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID--TNITFDRVQNDVTGG 205

Query: 158 -------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
                   + +       V + N N P  I    +   +GT+I
Sbjct: 206 IGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVI 248

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 19/111 (17%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMD---- 155
           D         +  E V+  T+VDGVY  NP+++P+ARLLD +   +    DL  +D    
Sbjct: 161 DQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLD----DLESLDGTLN 216

Query: 156 ------M----TAITLCQENNIPVVVFNLNQPGNIAKAIQGERV-GTLIGG 195
                 M      + L  E  +   + N   PGNI +A+ GE V GT I G
Sbjct: 217 TDVTGGMVGKIRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRITG 267

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* Length = 286

 Score = 64.2 bits (156), Expect = 1e-12
 Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 30/222 (13%)

Query: 2   FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAI---FLQATMESIGIPTRV 58
            ++ ++ GGG    GA    +S    S A        V            +++  +    
Sbjct: 65  GRMVLISGGGAFGHGAIRDHDSTHAFSLAGLTEATFEVKKRWAEKLRGIGVDAFPLQL-- 122

Query: 59  QTAFRMSEVAEPYIRRRAV-RHLEKGRV------VIFAAGTGNPFFTTDTAAALRCAEIN 111
             A        P +R   +   L+ G +       +F        F++D    +    + 
Sbjct: 123 -AAMCTLRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVE 181

Query: 112 AEV-VLKATNVDGVYDDNPRRNPNARLLDTLTYQEV--TSKDLSVMDMT--------AIT 160
             + V+  T+VDG+  D    +     +D  + ++        S  D T        A+ 
Sbjct: 182 GRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALV 241

Query: 161 LCQENNIPVVVFNLNQPGNI------AKAIQGERVGTLIGGT 196
            C        +   +   ++        +       T I  T
Sbjct: 242 TCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 26/181 (14%)

Query: 40  MNAIFLQATMESIGIPTRVQTAFRMS-EVAEPYIRRRAVRHLEKGRVVI---FAAGTGNP 95
           +N + L   + +  I       F  S    E     +    +      +   F   + N 
Sbjct: 119 LNGVILAKYLNAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAVIPGFYGSSFNG 178

Query: 96  FFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK 149
              T      D   ++  A +NA++    T+V G    +PR   N + +  ++Y+E+   
Sbjct: 179 DVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELR-- 236

Query: 150 DLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 204
           +LS     V+   AI   +++ IP+ + N N+P            GTLI    +  ++  
Sbjct: 237 ELSYMGATVLHEEAIFPVKDSGIPINIKNTNKP---------SDPGTLILSDTHKEINLG 287

Query: 205 L 205
            
Sbjct: 288 T 288

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 47/186 (25%)

Query: 40  MNAIFLQATMESIGIPT---------RVQTAFRMSEVAEPYIRRRAVRHL---EKGRVVI 87
           M+ +     +    +           R    F  +E     +   A   L       +VI
Sbjct: 121 MSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVI 180

Query: 88  ---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 138
              F         TT      D  AAL    ++A  V   T+V G+Y  +PR    A+ +
Sbjct: 181 TQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRI 240

Query: 139 DTLTYQEVTSKDLSVMDMT----------AITLCQENNIPVVVFNLNQPGNIAKAIQGER 188
           D + + E         +M            +     ++IPV V +   P           
Sbjct: 241 DEIAFAE-------AAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDP---------RA 284

Query: 189 VGTLIG 194
            GTL+ 
Sbjct: 285 GGTLVC 290

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Length = 367

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 22/111 (19%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM--- 156
           D  +AL      A+ +L  T+  G+Y  +PR NP A L+      +V   D ++  +   
Sbjct: 150 DNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIK-----DVYGIDDALRAIAGD 204

Query: 157 --------------TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
                          A  +     I  ++   ++PG I   ++G  VGTL 
Sbjct: 205 SVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLF 255

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 40/184 (21%)

Query: 40  MNAIFLQATMESIGIPTR----------VQTAFRMSEVAEPYIRRRAVRH----LEKGRV 85
           ++     A + +IG+  R              F   ++ E      A R     +    V
Sbjct: 150 LSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAV 209

Query: 86  VI----FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 135
            I       G      TT      D  A      +  + +    +VDGV   +P     A
Sbjct: 210 PIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRA 269

Query: 136 RLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVG 190
             +  LT+ E    +L+     V+   ++   +E  IPV V N   P         +  G
Sbjct: 270 TPVPYLTFDEAA--ELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNP---------KAPG 318

Query: 191 TLIG 194
           T+I 
Sbjct: 319 TIIT 322

>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Length = 251

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 24/112 (21%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM--- 156
           D+ +A      +A++++  +++DG YD NP    +A+ L+     ++T      +     
Sbjct: 143 DSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLE-----KITHIKEEWLQATIK 197

Query: 157 --------------TAITLCQENNIPVVVFNLNQPGNIAKAIQ--GERVGTL 192
                          A     E+N  + + +          +    +  GTL
Sbjct: 198 TGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTL 249

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 21/111 (18%)

Query: 78  RHLEKGRVVIFA----AGTGNPFFTT------DT-AAALRCAEINAEVVLKATNVDGVYD 126
             L++G++ I A            TT      DT A AL  A +NA+V    ++VDGVY 
Sbjct: 123 EALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAA-LNADVCEIYSDVDGVYT 181

Query: 127 DNPRRNPNARLLDTLTYQE------VTSKDLSVMDMTAITLCQENNIPVVV 171
            +PR  PNA+ L+ L+++E      V SK   ++ + ++   +  N+P+ V
Sbjct: 182 ADPRIVPNAQKLEKLSFEEMLELAAVGSK---ILVLRSVEYARAFNVPLRV 229

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 47.6 bits (114), Expect = 8e-07
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 26/114 (22%)

Query: 78  RHLEKGRVVIFA-------AGTGNPFFTT------DT-AAALRCAEINAEVVLKATNVDG 123
            HL +G+VV+ A               TT      DT A AL  A + A+     T+V G
Sbjct: 123 HHLREGKVVVVAGFQGISSVEHLE--ITTLGRGGSDTSAVALAAA-LKADFCEIYTDVPG 179

Query: 124 VYDDNPRRNPNARLLDTLTYQE------VTSKDLSVMDMTAITLCQENNIPVVV 171
           +   +PR  P A+L+  +T  E      + +K   V+   A+ + +   IP+VV
Sbjct: 180 ILTTDPRLVPEAQLMAEITCDEMLELASLGAK---VLHPRAVEIARNYGIPLVV 230

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 13/41 (31%)

Query: 74  RRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEV 114
           ++A++ L+   + ++A          D+A AL  A I A +
Sbjct: 19  KQALKKLQ-ASLKLYA-----D----DSAPAL--A-IKATM 46

>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Length = 314

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 20/98 (20%)

Query: 67  VAEPYIRR----RAVRHLEKGRVVIFAAGTGNP--------------FFTTDTAAALRCA 108
           V  P  +       ++ L +  V++ A+G G                    D A      
Sbjct: 165 VPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAE 224

Query: 109 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 146
           E+NA++ +  T+V+G            + L  +  +E+
Sbjct: 225 EVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEEL 260

>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Length = 310

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 146
           D A+      ++A+ ++  T VD V  +     P+ + L  +T  E+
Sbjct: 210 DFASEKLAELVDADALVILTGVDYVCIN--YGKPDEKQLTNVTVAEL 254

>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} Length = 316

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 21/99 (21%)

Query: 67  VAEPYIRR----RAVRHLEKGRVVIFAAGTGNP---------------FFTTDTAAALRC 107
           V  P          +         + A G G                     D A++L  
Sbjct: 165 VPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLA 224

Query: 108 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 146
            ++NA++++  T+V GV  +        R L      E+
Sbjct: 225 TQLNADLLVILTDVPGVAVNYG--REGERWLRRAAASEL 261

>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} Length = 317

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 20/98 (20%)

Query: 67  VAEPYIRR----RAVRHLEKGRVVIFAAGTGNP--------------FFTTDTAAALRCA 108
           V  P          ++ L    V++     G                    D A +L   
Sbjct: 167 VPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAK 226

Query: 109 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 146
            +N++ ++  T+V     +     P+ R L+ +   E+
Sbjct: 227 TLNSDYLMILTDVLNACINYK--KPDERKLEEIKLSEI 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	100.0
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	100.0
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	100.0
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	100.0
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	100.0
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	100.0
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	100.0
3nwy_A	281	Uridylate kinase; allosterically activated form, A	100.0
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	100.0
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	100.0
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	100.0
2ij9_A	219	Uridylate kinase; structural genomics, protein str	100.0
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	100.0
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	100.0
2ap9_A	299	NAG kinase, acetylglutamate kinase, AGK; structura	100.0
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	99.98
2rd5_A	298	Acetylglutamate kinase-like protein; protein-prote	99.98
2v5h_A	321	Acetylglutamate kinase; amino-acid biosynthesis, t	99.98
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	99.98
2ako_A	251	Glutamate 5-kinase; structural genomics, PSI, prot	99.97
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	99.97
2egx_A	269	Putative acetylglutamate kinase; struc genomics, N	99.97
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	99.97
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	99.97
2buf_A	300	Acetylglutamate kinase; acetyglutamate kinase, ADP	99.97
1gs5_A	258	Acetylglutamate kinase; carbamate kinase, amino ac	99.97
2bty_A	282	Acetylglutamate kinase; N-acetyl-L-glutamate kinas	99.97
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	99.97
3zzh_A	307	Acetylglutamate kinase; transferase, arginine bios	99.96
2e9y_A	316	Carbamate kinase; transferase, structural genomics	99.95
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	99.95
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	99.95
2we5_A	310	Carbamate kinase 1; arginine catabolism, arginine	99.95
4ab7_A	464	Protein Arg5,6, mitochondrial; transferase, argini	99.95
3d2m_A	456	Putative acetylglutamate synthase; protein-COA-Glu	99.95
3s6g_A	460	N-acetylglutamate kinase / N-acetylglutamate SYNT;	99.94
1e19_A	314	Carbamate kinase-like carbamoylphosphate synthetas	99.94
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	99.94
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	99.94
3l86_A	279	Acetylglutamate kinase; ARGB, amino-acid biosynthe	99.94
3s6k_A	467	Acetylglutamate kinase; synthase, transferase; 2.8	99.92
3kzf_A	317	Carbamate kinase; arginine dihydrolase pathway, gi	99.9
4axs_A	332	Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm	99.9

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A

Probab=100.00  E-value=2.6e-41  Score=279.20  Aligned_cols=193  Identities=52%  Similarity=0.922  Sum_probs=177.8

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      ++++||||||+++++.. ..+++++....|+++++++++|+.+++.+|++.|+++..+++++...+.+++..+.+.++|+
T Consensus        49 ~~vviV~gGG~~~~~~~-~~~~g~~~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~v~~~~~~~~~~~lL~  127 (243)
T 3ek6_A           49 AQVALVIGGGNIFRGAG-LAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLE  127 (243)
T ss_dssp             CEEEEEECSTTTSCSTT-TSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTTTBEECCHHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCcccCcCCHHHHHHHHH
Confidence            58999999999877653 45689988888999999999999988889999999999999999877666655677889999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL  161 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~  161 (206)
                      +|.|||++|+.|.+++++|++|+++|.+|+||+|+++|||||||++||+.+|+++++++++++|+.+.|.++||++|+..
T Consensus       128 ~g~IpVv~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~~~~~a~~~  207 (243)
T 3ek6_A          128 KGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFAL  207 (243)
T ss_dssp             TTCEEEEESTTSSTTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHHHTCCSSCHHHHHH
T ss_pred             CCcEEEEECCCCCCcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHhCCchhHHHHHHHH
Confidence            99999999988899999999999999999999999999999999999999999999999999988766777899999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      |.++|++++|+|+++|++|.++|+|+.+||+|.+
T Consensus       208 a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~  241 (243)
T 3ek6_A          208 ARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG  241 (243)
T ss_dssp             HHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred             HHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence            9999999999999999999999999999999987

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3

Probab=100.00  E-value=2.4e-40  Score=272.33  Aligned_cols=192  Identities=55%  Similarity=0.901  Sum_probs=173.7

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhH-HHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI-RRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~-~~~l~~~l   80 (206)
                      +++|||||||++++++. ++++++++...+.++++++++|..++..+|+++|+++.++++.+...+.+.+. .+.+ ++|
T Consensus        47 ~~vviV~GgG~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~ll  124 (239)
T 1ybd_A           47 VQVGIVVGGGNIFRGVS-AQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAI-QYL  124 (239)
T ss_dssp             CEEEEEECCHHHHHHHH-HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHH-HHH
T ss_pred             CeEEEEECCcHHHhchh-HHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccccccchhHHHHH-HHH
Confidence            58999999999999975 56789998888888999999999988888999999999999887655544432 2344 789


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT  160 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~  160 (206)
                      +.|.|||++++.|.+++++|++|+++|.+|+||+|+|||||||||++||+.+|++++|++++++|+.++|.++||++|+.
T Consensus       125 ~~g~ipVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~  204 (239)
T 1ybd_A          125 EEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFA  204 (239)
T ss_dssp             HTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHH
T ss_pred             hCCcEEEEECCccCCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHhcccccCHHHHH
Confidence            99999999988888999999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      .|.++|++++|+|+++|++|.++|+|+.+||+|.+
T Consensus       205 ~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~  239 (239)
T 1ybd_A          205 LCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC  239 (239)
T ss_dssp             HHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred             HHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence            99999999999999999999999999999999974

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*

Probab=100.00  E-value=2.3e-40  Score=273.08  Aligned_cols=192  Identities=53%  Similarity=0.893  Sum_probs=168.6

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCC-CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSG-LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      ++++||||||++++++.. ++.| ++....+.+.++++.+|+.+++.+|+++|++++++++.++..+.+++..+.+.++|
T Consensus        47 ~~vvlV~gGG~~~~g~~~-~~~G~~~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~~~~~~~~~~~i~~lL  125 (240)
T 4a7w_A           47 IEVGIVIGGGNIIRGVSA-AQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHL  125 (240)
T ss_dssp             CEEEEEECCTTTC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHH
T ss_pred             CcEEEEECCcHHHhHhHH-HhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcCcccCcCcHHHHHHHH
Confidence            589999999999988653 2467 77777788999999999999988899999999999999987766655557788999


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT  160 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~  160 (206)
                      ++|.|||++|+.|.+++++|++|+++|.+|+||+|+++|||||||++||+.+|++++|++++++|+.+.|.++||++|+.
T Consensus       126 ~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~  205 (240)
T 4a7w_A          126 EKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAIS  205 (240)
T ss_dssp             HTTCEEEEESTTSCTTSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHSSCCSSCHHHHH
T ss_pred             HCCCEEEEeCCCCCCCCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhcCccccHHHHHH
Confidence            99999999998888999999999999999999999999999999999999999999999999999888888899999999


Q ss_pred             HHHhCCCcEEEEcCCCCchHHHHhcCC-CcceEEe
Q 028621          161 LCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLIG  194 (206)
Q Consensus       161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~-~~GT~i~  194 (206)
                      .|.++|++++|+|+++|++|.+++.|+ ++||+|.
T Consensus       206 ~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i~  240 (240)
T 4a7w_A          206 LAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK  240 (240)
T ss_dssp             HHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred             HHHHCCCeEEEECCCCccHHHHHHCCCCCCceeeC
Confidence            999999999999999999999887765 5899984

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3

Probab=100.00  E-value=5.6e-40  Score=272.45  Aligned_cols=197  Identities=51%  Similarity=0.869  Sum_probs=175.9

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      +++|||||||+++++++ ++++++++...+.++++++.+|..++..+|.+.|+++.++++.+...+.+.++...++.+|+
T Consensus        47 ~~vVlVhGgG~~~~g~~-~~~lg~~~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~~~~~~~~~~~~lL~  125 (252)
T 1z9d_A           47 VQIALVIGGGNLWRGEP-AADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLE  125 (252)
T ss_dssp             CEEEEEECCTTTCCHHH-HHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHH
T ss_pred             CEEEEEECCChHhccch-HHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCcchHHHHHHHHh
Confidence            58999999999999976 56789999888888999999999988888999999999999887654443343344578999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee-ccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT-NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT  160 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~lt-dV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~  160 (206)
                      .|.|||++|+.|.+++++|++|+++|.+|+||+|+|+| ||||||++||+.+|++++|+++++.|+.+.+.++||++|+.
T Consensus       126 ~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~mk~~aa~  205 (252)
T 1z9d_A          126 KNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATAST  205 (252)
T ss_dssp             TTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHHH
T ss_pred             CCCEEEEeCCcCCCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHhccccccCHHHHH
Confidence            99999999987888999999999999999999999999 99999999999999999999999999987788889999999


Q ss_pred             HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCC
Q 028621          161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS  199 (206)
Q Consensus       161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~  199 (206)
                      .|.+.|++++|+|+++|++|.++|+|+..||+|.++..+
T Consensus       206 ~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~  244 (252)
T 1z9d_A          206 LSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKVCD  244 (252)
T ss_dssp             HHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC---
T ss_pred             HHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCCCC
Confidence            999999999999999999999999999999999986554

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*

Probab=100.00  E-value=3.7e-40  Score=272.73  Aligned_cols=193  Identities=45%  Similarity=0.817  Sum_probs=169.5

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      +++|||||||++++++. ++++++++...|.++++++++|..++..+|++.|+++.++++.+...+.+.++...++++|+
T Consensus        48 ~~vVlVhGgG~~~~~~~-~~~~g~~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~  126 (247)
T 2a1f_A           48 VEVSVVLGGGNLFRGAK-LAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLR  126 (247)
T ss_dssp             CEEEEEECCTTTCCCHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHH
T ss_pred             CeEEEEECCChHhcchh-HHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecccccccccchhhHHHHHHHHh
Confidence            58999999999999975 56789999988999999999999988888999999999999888765544444345678999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL  161 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~  161 (206)
                      .|.|||++|+.|.+++++|++|+++|.+|+||+|+|+|||||||++||+.+|++++|++++++|+.++|.++||++|+..
T Consensus       127 ~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~g~~~m~~~aa~~  206 (247)
T 2a1f_A          127 EKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTL  206 (247)
T ss_dssp             TTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHH
T ss_pred             CCCEEEEeCCcCCCCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHcCccccCHHHHHH
Confidence            99999999987889999999999999999999999999999999999999999999999999999888888899999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      |.+.|++++|+|+++|+.|.++++|+.+||+|..
T Consensus       207 a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~  240 (247)
T 2a1f_A          207 ARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE  240 (247)
T ss_dssp             HHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECC
T ss_pred             HHHcCCcEEEEeCCCchHHHHHHcCCCCceEEee
Confidence            9999999999999999999999999999999975

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}

Probab=100.00  E-value=1.3e-39  Score=270.86  Aligned_cols=192  Identities=40%  Similarity=0.721  Sum_probs=166.1

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      +++|||||||++++++. ++++++++...+.++++++.+|..++..+|+++|+++.++++.+...+.++++...+..+|+
T Consensus        63 ~~vVlVhGgG~~~~~~~-~~~~g~~~~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~~~~~~~~~~~~~~~lL~  141 (256)
T 2va1_A           63 YIVSIVLGGGNIWRGSI-AKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIE  141 (256)
T ss_dssp             SEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCCTTTCEECCHHHHHHHHH
T ss_pred             CEEEEEECCcHHhccch-HHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeecccccchhhHHHHHHHHh
Confidence            58999999999999976 67789998888888999999999998888999999999988877655555554444478999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec-cCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT  160 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltd-V~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~  160 (206)
                      +|.|||++|..|.+++++|++|+++|.+|+||+|+|+|| |||||++||+++|++++|++++++|+.+++.++||++|+.
T Consensus       142 ~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~~~~~mk~~aa~  221 (256)
T 2va1_A          142 KEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALA  221 (256)
T ss_dssp             TTCEEEEESTTSSSSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHHTCCSSCHHHHH
T ss_pred             CCcEEEEECCCCCCCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHhccCCccHHHHH
Confidence            999999999888899999999999999999999999999 9999999999999999999999999887666788999999


Q ss_pred             HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      .|.++|++++|+|+++|++|.++|+|+.+||+|.
T Consensus       222 ~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~  255 (256)
T 2va1_A          222 LCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS  255 (256)
T ss_dssp             HHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred             HHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence            9999999999999999999999999999999996

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}

Probab=100.00  E-value=4.7e-39  Score=267.36  Aligned_cols=196  Identities=43%  Similarity=0.768  Sum_probs=175.8

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHh-CCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~-~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      +++|||||||++++++. ++++++++...+.++++++.+|+.+++.+|++ +|+++.++++.+...+.+++....+.++|
T Consensus        52 ~~vViV~GgG~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~~~~~~~~~~lL  130 (255)
T 2jjx_A           52 IEVSIVIGGGNIFRGHL-AEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHL  130 (255)
T ss_dssp             CEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEESSCCCSSSEECCHHHHHHHH
T ss_pred             CeEEEEECchHHHhhhH-HHHcCCCCCChHHHhHHHHHHHHHHHHHHHHhhcCCceEEecHHHcCcccCcccHHHHHHHH
Confidence            58999999999998875 66789988777888899999999988889999 99999999998877555444333444889


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee-ccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHH
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT-NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAI  159 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~lt-dV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~  159 (206)
                      ++|.|||++|..|++++++|++|+++|.+|+||+|+||| ||||||++||+.+|++++|++++++|+.++|.++|++.|+
T Consensus       131 ~~g~IpVi~gg~g~~~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~G~~~m~~~a~  210 (255)
T 2jjx_A          131 DNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAAL  210 (255)
T ss_dssp             HTTCEEEEESTTSCSSCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHTTCCSSCHHHH
T ss_pred             hCCcEEEEeCCCCCCccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHcCCccCHHHHH
Confidence            999999999866788899999999999999999999999 9999999999999999999999999998888889999999


Q ss_pred             HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCC
Q 028621          160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN  198 (206)
Q Consensus       160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~  198 (206)
                      +.+.+.|++++|+|+++|++|.++|+|+..||+|.++.+
T Consensus       211 ~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~~~  249 (255)
T 2jjx_A          211 LLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS  249 (255)
T ss_dssp             HHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESSCC
T ss_pred             HHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecCcc
Confidence            999889999999999999999999999999999998543

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.8e-39  Score=270.72  Aligned_cols=192  Identities=56%  Similarity=0.917  Sum_probs=166.4

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      ++++||||||++++++.. .+++++....++++++++++|+.+++.+|+++|+++..+++.+...+.+++++....++|+
T Consensus        89 ~~vviV~GgG~i~~g~~~-~~~gl~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~~~~~~~~~l~lL~  167 (281)
T 3nwy_A           89 VQIAVVIGGGNFFRGAQL-QQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLE  167 (281)
T ss_dssp             CEEEEEECCTTC---CCT-TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGGGSEECCHHHHHHHHH
T ss_pred             CeEEEEECChhHhhhHHH-HhcCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccccccccchHHHHHHHH
Confidence            689999999999888742 2478888888999999999999999999999999999888887766666654433448999


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL  161 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~  161 (206)
                      +|.|||++++.|.++++||++|+++|.+++||+|+++|||||||++||+.+|++++|+++++.|+.+.|.+.||++|+..
T Consensus       168 ~g~IpVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~~g~~v~k~~Aa~~  247 (281)
T 3nwy_A          168 KGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSL  247 (281)
T ss_dssp             TTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHTTTCCSSCHHHHHH
T ss_pred             cCCeEEEECCCCCCCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHHcCCCcHHHHHHHH
Confidence            99999999988899999999999999999999999999999999999999999999999999998777778899999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      |.++|++++|+|+++|++|.++|+|+.+||+|.
T Consensus       248 a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~  280 (281)
T 3nwy_A          248 CMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT  280 (281)
T ss_dssp             HHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred             HHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence            999999999999999999999999999999996

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*

Probab=100.00  E-value=1.2e-37  Score=254.45  Aligned_cols=180  Identities=28%  Similarity=0.452  Sum_probs=160.1

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      ++++||||||++++++. .++++++++..++.+.++++.+|+.+++.+|+++|+++   +         +...+.++.+|
T Consensus        35 ~~vvlV~ggG~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~---------~~~~~~i~~ll  102 (226)
T 2j4j_A           35 FRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMH---V---------PQSLEEFIQDW  102 (226)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC---C---------CSSHHHHHHHH
T ss_pred             CeEEEEECcchHhchhHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCC---C---------cCCHHHHHHHH
Confidence            58999999999988864 46779999988999999999999999988899899865   1         11235688999


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC----C----cC
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----D----LS  152 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----g----~~  152 (206)
                      ++|.|||++|  |.+++++|++|+++|.+|+||+|+|||||||||++||+.+|++++|++++++|+.++    |    .+
T Consensus       103 ~~g~ipVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm  180 (226)
T 2j4j_A          103 SHGKVVVTGG--FQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGT  180 (226)
T ss_dssp             TTSSBEEECC--CSTTSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC---------
T ss_pred             HCCCEEEEcC--CCCCCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCc
Confidence            9999999999  688999999999999999999999999999999999999999999999999987754    2    33


Q ss_pred             --cchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          153 --VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       153 --~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                        .+|++++..|.++|++++|+|+++|++|.++|+|+..||+|.+
T Consensus       181 ~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~  225 (226)
T 2j4j_A          181 YELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP  225 (226)
T ss_dssp             -CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred             cccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence              6799999999999999999999999999999999999999975

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*

Probab=100.00  E-value=2e-36  Score=250.05  Aligned_cols=180  Identities=27%  Similarity=0.405  Sum_probs=158.0

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      +++|||||||+++++++ .++++++++..++.+.+.++.+|+.+++..|+++|++..            ++..+.+.++|
T Consensus        55 ~~vViV~GgG~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~------------~~~~~~i~~lL  122 (244)
T 2brx_A           55 HEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVV------------VEDFWEAWKAV  122 (244)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSC------------BCSHHHHHHHH
T ss_pred             CeEEEEECccHHHhchHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCCC------------cCCHHHHHHHH
Confidence            58999999999988853 467799999889999999999999999878988897651            11135678899


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC----Cc-----
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DL-----  151 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----g~-----  151 (206)
                      ++|.|||++|  |.+++++|++|+++|.+|+||+|+|+|||||||++||+++|++++|+++++.|+.++    |.     
T Consensus       123 ~~g~IpVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m  200 (244)
T 2brx_A          123 QLKKIPVMGG--THPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSS  200 (244)
T ss_dssp             HTTCBCEECC--CSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------
T ss_pred             hCCCEEEEcC--CCCCCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCC
Confidence            9999999998  788899999999999999999999999999999999999999999999999988754    32     


Q ss_pred             CcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       152 ~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +.+++.|++.+.+.+++++|+|+++|++|.++|+|+.+||+|.+
T Consensus       201 ~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~  244 (244)
T 2brx_A          201 SVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  244 (244)
T ss_dssp             CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             cchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence            45588888998889999999999999999999999999999974

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=1.1e-35  Score=248.87  Aligned_cols=190  Identities=26%  Similarity=0.335  Sum_probs=152.5

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhh-------hHHHHHHHH-----HHHHHHHHHHHhCCCCceEecccccccccc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA-------DYIGMLATV-----MNAIFLQATMESIGIPTRVQTAFRMSEVAE   69 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~-----~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~   69 (206)
                      .+++||||||+|  ++.+++++++.+++.       ++.++..+.     +|+.+++ +|+++|++++++++.+...+..
T Consensus        42 ~~~vlVhGGG~~--~~~~~~~~gi~~~~~~~~g~~~~~~G~rvT~~~~~~ln~~l~~-~L~~~G~~a~~l~g~~~~~~~~  118 (269)
T 3ll9_A           42 SSLMIVHGAGSF--GHPFAGEYRIGSEIENEEDLRRRRFGFALTQNWVKKLNSHVCD-ALLAEGIPAVSMQPSAFIRAHA  118 (269)
T ss_dssp             SSEEEEECCGGG--THHHHHHHTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEECCGGGTEEEET
T ss_pred             CCEEEEECCcHH--HHHHHHHcCCCcccccCcccccccchhhHHHHHHHHHHHHHHH-HHHHCCCcEEEEcchHcCeEec
Confidence            479999999999  666778889877553       245666665     9997655 5888999999999998754321


Q ss_pred             h----hHHHHHHHHhhCCCEEEEeCC-----C--C-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcc
Q 028621           70 P----YIRRRAVRHLEKGRVVIFAAG-----T--G-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL  137 (206)
Q Consensus        70 ~----~~~~~l~~~l~~g~ipvi~g~-----~--g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~  137 (206)
                      .    ...+.++.+|++|.|||++|+     .  | .+++++|++|+++|.+|+||+|+|+|||||||++||+.+|++++
T Consensus       119 g~v~~v~~~~i~~lL~~g~ipVi~~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~  198 (269)
T 3ll9_A          119 GRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARL  198 (269)
T ss_dssp             TEEEEECCHHHHHHHHTTCEEEEECEEEEBSCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCB
T ss_pred             CeeeeecHHHHHHHHHCCCEEEECCCEEecccccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceE
Confidence            1    124678999999999999984     2  2 24689999999999999999999999999999999999999999


Q ss_pred             cccccHHHHhcC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCc-ceEEe
Q 028621          138 LDTLTYQEVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV-GTLIG  194 (206)
Q Consensus       138 i~~i~~~e~~~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~-GT~i~  194 (206)
                      |+++++.|+.++        ..++|  |+++|..+.++|++++|+|++.|++|.++|+|+.+ ||+|.
T Consensus       199 i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~  266 (269)
T 3ll9_A          199 LDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT  266 (269)
T ss_dssp             CSBCCC-------------------SHHHHHHHHHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred             ccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence            999999887542        12334  99999999999999999999999999999999999 99997

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3

Probab=100.00  E-value=5.4e-35  Score=237.51  Aligned_cols=177  Identities=36%  Similarity=0.472  Sum_probs=152.7

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      +++|||||||+++++.+ .++++++++..++.+.+.++.+|+.+++.+++. ++..            ++...+.++.+|
T Consensus        33 ~~vvlV~ggG~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~------------~~~~~~~i~~ll   99 (219)
T 2ij9_A           33 NQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPS-AAKK------------VPVDFMEAEELS   99 (219)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-BCSS------------CCSSHHHHHHHH
T ss_pred             CEEEEEECcchHhcchHHHHHHcCCCccchHHHHHHHHHHHHHHHHHHHHH-hcCC------------CcCCHHHHHHHH
Confidence            58999999999988853 467799999999999999999999999987653 3211            111236688999


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC----Cc-----
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DL-----  151 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----g~-----  151 (206)
                      ++|.|||++|  |.+++++|++|+++|.+|+||+|+|+|||||||++||+.+|++++|+++++.|+.++    |.     
T Consensus       100 ~~g~ipVi~~--g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~  177 (219)
T 2ij9_A          100 KLYRVVVMGG--TFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTN  177 (219)
T ss_dssp             TTCSEEEECC--CSSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCC
T ss_pred             HCCCEEEEeC--CCCCCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCc
Confidence            9999999999  788899999999999999999999999999999999999999999999999988754    22     


Q ss_pred             CcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       152 ~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +.+++.|+..+.+.+++++|+|+ +|++|.++|+|+++||+|.
T Consensus       178 ~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~  219 (219)
T 2ij9_A          178 VVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             CCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred             cchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence            34588899999999999999999 9999999999999999984

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*

Probab=100.00  E-value=1.3e-34  Score=239.93  Aligned_cols=187  Identities=22%  Similarity=0.296  Sum_probs=153.6

Q ss_pred             ceEE-EEEcCChhhhhhhhhhcCCCChhh--hhHHHHHHH-----HHHHHHHHHHHHhCCCCceEecccccccccchhHH
Q 028621            2 FQVA-IVVGGGNIFRGASAAGNSGLDRSS--ADYIGMLAT-----VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIR   73 (206)
Q Consensus         2 ~~~i-iVhGGG~~~~~~~~~~~~~l~~~~--~~~~~~~~~-----~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~   73 (206)
                      ++++ ||||||++  ++.+++++++++.+  .+..++..+     ++|+.++. +|+++|+++.++++.+...+.++ ..
T Consensus        40 ~~vv~lVhGGG~~--~~~~~~~~gi~~~~~~~d~~gl~~t~~~~~~ln~~~v~-~l~~~G~~a~~l~~~~~~~~g~v-~~  115 (249)
T 3ll5_A           40 EDLVCVVHGGGSF--GHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVID-AMIEMGMRPISVPISALRYDGRF-DY  115 (249)
T ss_dssp             TTEEEEEECCGGG--THHHHHHHTCSEECCHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEECCGGGSCBSSSB-CC
T ss_pred             CceEEEEECccHH--HHHHHHHhCCCcCCCccccccHHHHHHHHHHHHHHHHH-HHHHCCCcEEEEcHHHcccccEE-cH
Confidence            5789 99999999  55567889998876  355555444     89999985 57889999999999988666655 44


Q ss_pred             HHHHHHhhCCCEEEEeCC-----CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHh
Q 028621           74 RRAVRHLEKGRVVIFAAG-----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  147 (206)
Q Consensus        74 ~~l~~~l~~g~ipvi~g~-----~g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~  147 (206)
                      +.++.+|++|.|||++|+     .+ .+++++|++|+++|.+|+||+|+|+|||||||++||+.+|+++++++++. ++.
T Consensus       116 ~~i~~ll~~g~ipVi~~~~~~~~~~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~~-~~~  194 (249)
T 3ll5_A          116 TPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDT-NIT  194 (249)
T ss_dssp             HHHHHHHHTTCEEEEECEEEEEETTEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEECC-CC-
T ss_pred             HHHHHHHHCCCEEEECCCEEEcCCCceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHHH-HHh
Confidence            788999999999999974     12 24789999999999999999999999999999999999999999999952 222


Q ss_pred             c-----CCcCc--chHHHHHHH-HhCCCcEEEEcCCCCchHHHHhcCCCc-ceEEe
Q 028621          148 S-----KDLSV--MDMTAITLC-QENNIPVVVFNLNQPGNIAKAIQGERV-GTLIG  194 (206)
Q Consensus       148 ~-----~g~~~--~k~~a~~~a-~~~gi~v~I~~g~~~~~l~~~l~g~~~-GT~i~  194 (206)
                      .     ...++  .|+++|..+ .++|++++|+|+++|++|.+ |.|+.+ ||+|+
T Consensus       195 ~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~GT~i~  249 (249)
T 3ll5_A          195 FDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGD-IGKESFIGTVIR  249 (249)
T ss_dssp             ------------HHHHHHHHHHHTTCTTCEEEEETTSGGGGGG-TTSTTCCSEEEC
T ss_pred             cccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChhHHHH-hCCCCCCCEEeC
Confidence            1     12334  499999998 89999999999999999999 999988 99984

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=100.00  E-value=2.7e-33  Score=235.19  Aligned_cols=187  Identities=25%  Similarity=0.286  Sum_probs=157.7

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      +++|||||||++++.+. ...+.++++..++.+++.++++|..+++.++.+.|++++.++          ...+.++.+|
T Consensus        72 ~~vVlV~GGg~~~~~~~~~~~~~gl~~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~----------~~~~~i~~lL  141 (276)
T 2ogx_A           72 HRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHP----------TVADQLAIHL  141 (276)
T ss_dssp             CEEEEEECCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHH----------HHHHHHHHHH
T ss_pred             CeEEEEECcHHHHHHHHhccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc----------ChHHHHHHHH
Confidence            58999999999977654 234467888888888888899999999988877888764222          1246788999


Q ss_pred             hCCCEEEEeCCC--------C--CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC--CCCCCcccccccHHHHhc
Q 028621           81 EKGRVVIFAAGT--------G--NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR--RNPNARLLDTLTYQEVTS  148 (206)
Q Consensus        81 ~~g~ipvi~g~~--------g--~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~--~~~~a~~i~~i~~~e~~~  148 (206)
                      ++|.|||++|+.        |  .+++++|++|+++|.+|+||+|+|+|||||||++||+  .+|++++|+++++.|+.+
T Consensus       142 ~~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~  221 (276)
T 2ogx_A          142 SATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAK  221 (276)
T ss_dssp             HHSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHT
T ss_pred             hCCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHH
Confidence            999999999951        2  2589999999999999999999999999999999998  889999999999999988


Q ss_pred             C-CcCcchHHHHHHHH--hCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCC
Q 028621          149 K-DLSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN  198 (206)
Q Consensus       149 ~-g~~~~k~~a~~~a~--~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~  198 (206)
                      + +.++|++++...+.  +.+++++|+|+++|++|.++|+|+..||+|.++..
T Consensus       222 ~~g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~  274 (276)
T 2ogx_A          222 SEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVR  274 (276)
T ss_dssp             SCSCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECSCC
T ss_pred             HhCcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccCCC
Confidence            7 67788776665555  55789999999999999999999999999987643

>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2

Probab=100.00  E-value=3.6e-32  Score=230.66  Aligned_cols=190  Identities=16%  Similarity=0.162  Sum_probs=152.7

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHH-HHHHHHHHHHHHHHhCCCCceEeccccccccc-
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGML-ATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-   68 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~-~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~-   68 (206)
                      +++|||||||++++..  .++++++.           ..++.+.+. ..++|..+ ..+|+++|++++++++.+...+. 
T Consensus        58 ~~vViVhGgG~~i~~~--~~~~~~~~~~~~g~R~t~~~~l~~~~~~~~G~l~~~l-~~~L~~~g~~av~lt~~d~~~~~~  134 (299)
T 2ap9_A           58 IHPVVVHGGGPQITAM--LRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGREL-VNLINAHGPYAVGITGEDAQLFTA  134 (299)
T ss_dssp             CEEEEEECCSHHHHHH--HHHHTCCCCCSSSSCCBCHHHHHHHHHHHHHTHHHHH-HHHHTTSSSCEEEEETTGGGCEEE
T ss_pred             CcEEEEECCcHHHHHH--HHHcCCcccccCCcccCCHHHHHHHHHHHhhHHHHHH-HHHHHhCCCCceEechhHCCEEEE
Confidence            5899999999997653  45556543           234555554 34688875 56789999999999988743221 


Q ss_pred             ch--------------------hHHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCc
Q 028621           69 EP--------------------YIRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDG  123 (206)
Q Consensus        69 ~~--------------------~~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ltdV~G  123 (206)
                      ++                    ...+.++.+|++|.|||++|+    .|..+ +++|++|+++|.+|+||+|+|||||||
T Consensus       135 ~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVv~~v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdG  214 (299)
T 2ap9_A          135 VRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDG  214 (299)
T ss_dssp             EECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEEECCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChh
Confidence            00                    125788999999999999985    34444 599999999999999999999999999


Q ss_pred             cccCCCCCCCCCcccccccHHHHhcC---CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEecC
Q 028621          124 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT  196 (206)
Q Consensus       124 v~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~~  196 (206)
                      ||++||+   ++++|++++++|+.++   +.++|  |++|+..+.++|++ ++|+|+++|++| .++|+|+++||+|.++
T Consensus       215 V~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~  291 (299)
T 2ap9_A          215 LYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG  291 (299)
T ss_dssp             EETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred             hhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence            9999996   4689999999988764   45566  88999999999998 999999999997 7999999999999875


Q ss_pred             C
Q 028621          197 W  197 (206)
Q Consensus       197 ~  197 (206)
                      .
T Consensus       292 ~  292 (299)
T 2ap9_A          292 E  292 (299)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.98  E-value=5.7e-31  Score=220.32  Aligned_cols=183  Identities=25%  Similarity=0.361  Sum_probs=145.2

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      +++|||||||++.++.. ...+.+++....+.....+..++..+++.+|+++|++.+  +..+         .+.++++|
T Consensus        70 ~~vVlVhGGg~~~~~~~~~~~~~g~~~~~~~~~~~~a~G~~~l~~~~~l~~~G~~~v--t~~d---------~~~i~~lL  138 (270)
T 2ogx_B           70 HKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNAAMLGQLLAKHGIPVV--GGAG---------LSAVPLSL  138 (270)
T ss_dssp             CEEEEEECCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBC--CSST---------TCHHHHHC
T ss_pred             CcEEEEECChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcee--cHhh---------HHHHHHHH
Confidence            57999999999865532 122457777777777777778999999888888898732  1111         13478899


Q ss_pred             hCCCEEEEeCCCC------------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhc
Q 028621           81 EKGRVVIFAAGTG------------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  148 (206)
Q Consensus        81 ~~g~ipvi~g~~g------------~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  148 (206)
                      ++|.|||++|+.|            ++++++|++|+++|.+++||+|+++|||||||++||+.+|++++|++++++|+.+
T Consensus       139 ~~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~  218 (270)
T 2ogx_B          139 AEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKA  218 (270)
T ss_dssp             TTCCEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHH
T ss_pred             hCCCEEEEeCCccccccccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHH
Confidence            9999999998622            3569999999999999999999999999999999999999999999999999887


Q ss_pred             CC--cCcchHHHHHHHH--hCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          149 KD--LSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       149 ~g--~~~~k~~a~~~a~--~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +.  ...++......+.  +.+++++|+|+++|++|.++|+|+.+||+|.+
T Consensus       219 ~~~~g~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~  269 (270)
T 2ogx_B          219 KGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA  269 (270)
T ss_dssp             TTCCCTTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             HhcCCCcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence            52  1134333222222  35679999999999999999999999999986

>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}

Probab=99.98  E-value=1.1e-31  Score=227.47  Aligned_cols=188  Identities=15%  Similarity=0.243  Sum_probs=149.5

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHHH-HHHHHHHHHHHHHhCCCCceEeccccccccc-
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-   68 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~~-~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~-   68 (206)
                      +++|||||||++++.  ..++++++.           ..++.+.+.. ..+|..+ ..+|+++|++++++++.+...+. 
T Consensus        69 ~~vViVhGgG~~i~~--~~~~~~~~~~~~~g~R~t~~~~l~~~~~~~~G~~n~~l-~~~l~~~g~~a~~l~~~~~~~l~~  145 (298)
T 2rd5_A           69 LRPILVHGGGPDINR--YLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNL-VSLINAAGATAVGLSGHDGRLLTA  145 (298)
T ss_dssp             CEEEEEECCHHHHHH--HHHHTTCCCCEETTEECBCHHHHHHHHHHHHHTHHHHH-HHHHHHTTSCEEEEETTGGGCEEE
T ss_pred             CCEEEEECCcHHHHH--HHHHcCCCccccCCcccCCHHHHHHHHHHHhchHHHHH-HHHHHhCCCCccccChHHCCEEEE
Confidence            589999999999755  445566543           3455554543 5778765 44688999999998876532211 


Q ss_pred             -------------ch--hHHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 028621           69 -------------EP--YIRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDN  128 (206)
Q Consensus        69 -------------~~--~~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~d  128 (206)
                                   ..  ...+.++.+|++|.|||++|+    .|..+ +++|++|+++|.+|+||+|+|+|||||||++|
T Consensus       146 ~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~d  225 (298)
T 2rd5_A          146 RPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENK  225 (298)
T ss_dssp             EECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEESEEECTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSS
T ss_pred             EeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCC
Confidence                         10  013678899999999999985    34444 59999999999999999999999999999999


Q ss_pred             CCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEec
Q 028621          129 PRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGG  195 (206)
Q Consensus       129 P~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~  195 (206)
                      |+  | +++|++++++|+.++     ..++|  |++|+..+.++|++ ++|+|++.|++| .++|++++.||+|.+
T Consensus       226 p~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~  298 (298)
T 2rd5_A          226 ED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG  298 (298)
T ss_dssp             SC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred             CC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence            96  4 899999999988754     23445  88999999999998 999999999999 799999999999974

>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*

Probab=99.98  E-value=1.3e-31  Score=229.20  Aligned_cols=193  Identities=18%  Similarity=0.242  Sum_probs=150.6

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHH-HHHHHHHHHHHHHHhCCCCceEecccccc----
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGML-ATVMNAIFLQATMESIGIPTRVQTAFRMS----   65 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~-~~~~~~~ll~~~l~~~gi~a~~l~~~~~~----   65 (206)
                      +++|||||||++++.  ..++++++.           ..++.+.+. ...+|..++ .+|+++|++++++++.+..    
T Consensus        82 ~~vVlVhGgG~~i~~--~~~~~g~~~~~~~g~Rvt~~~~l~~~~~~~~G~in~~l~-~~L~~~g~~a~gl~~~~a~~l~a  158 (321)
T 2v5h_A           82 MRPVVVHGGGPEINA--WLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIV-SRINTTGGRAVGFCGTDGRLVLA  158 (321)
T ss_dssp             CEEEEEECCHHHHHH--HHHHTTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHHH-HHHHHHTCCEEEECTTGGGSEEE
T ss_pred             CEEEEEECCHHHHHH--HHHHcCCCccccCCcccCCHHHHHHHHHHHhChHHHHHH-HHHHhCCCCeeeeChhhccEEEe
Confidence            589999999999765  445677653           334555443 357888654 4688899999988876432    


Q ss_pred             ---------cccchh--HHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 028621           66 ---------EVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNP  129 (206)
Q Consensus        66 ---------~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP  129 (206)
                               +.....  ..+.++.+|++|.|||+++.    .|..+ +++|++|+++|.+|+||+|+|+|||||||++||
T Consensus       159 ~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp  238 (321)
T 2v5h_A          159 RPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPK  238 (321)
T ss_dssp             EECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTT
T ss_pred             ecCCCccccccceeEEecHHHHHHHHHCCCeEEEeCceECCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCC
Confidence                     111110  14678899999999999974    34455 499999999999999999999999999999999


Q ss_pred             CCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEecCCCCc
Q 028621          130 RRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTWNST  200 (206)
Q Consensus       130 ~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~~~~~~  200 (206)
                      +   ++++|++++++|+.++     +.++|  |++|+..|.++|++ ++|+|++.|++| .++|+++..||+|.++.++.
T Consensus       239 ~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~~~~~  315 (321)
T 2v5h_A          239 R---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGYHE  315 (321)
T ss_dssp             C---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC----
T ss_pred             C---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECCcccc
Confidence            6   4899999999988754     24456  88999999999998 999999999998 68999999999999876654

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*

Probab=99.98  E-value=3e-32  Score=227.68  Aligned_cols=182  Identities=23%  Similarity=0.265  Sum_probs=142.7

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChh---hhhH--HHHHHHH-----HHHHHHHHHHHhCCCCceEeccccccccc--c
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRS---SADY--IGMLATV-----MNAIFLQATMESIGIPTRVQTAFRMSEVA--E   69 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~---~~~~--~~~~~~~-----~~~~ll~~~l~~~gi~a~~l~~~~~~~v~--~   69 (206)
                      +++|||||||++  ++.+++++|++++   ..+.  .++..+.     +|+.+.+ +|+++|+++.++++.++..+.  .
T Consensus        53 ~~vVlVhGGG~~--~~~~~~~lgi~~~~~~~~~~~~~G~r~T~~a~~~ln~~l~~-~l~~~G~~a~~l~~~d~~~~~~g~  129 (266)
T 3k4o_A           53 IKLILVHGGGAF--GHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIID-TLQSYDIPAVSIQPSSFVVFGDKL  129 (266)
T ss_dssp             CEEEEEECCHHH--HHHHHGGGEEECSSSEEECCHHHHHHHHHHHHHHHHHHHHH-HHHTTTCCEEEECGGGTCEESSSC
T ss_pred             CCEEEEeCchHH--HHHHHHHcCCCcccCcccccccCceeHHHHHHHHHHHHHHH-HHHHCCCcEEEeeHHHcCcccCce
Confidence            689999999999  5546788888776   1222  5555554     9998654 688899999999999876544  2


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCC-----C-CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH
Q 028621           70 PYIRRRAVRHLEKGRVVIFAAG-----T-GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY  143 (206)
Q Consensus        70 ~~~~~~l~~~l~~g~ipvi~g~-----~-g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~  143 (206)
                      ....+.++.+|++|.|||++|+     . +.+++++|++|+++|.+|+||+|+|+||||||| +||+      ++++++.
T Consensus       130 ~v~~~~i~~lL~~g~ipVi~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~------~i~~~~~  202 (266)
T 3k4o_A          130 IFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVL-IDNK------PIKRIDK  202 (266)
T ss_dssp             BCCCHHHHHHHHTTCEEEEECEEEEESSSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSSS------BCSEECT
T ss_pred             EecHHHHHHHHHCCCEEEEeCCEEEcCCCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCCe------ecCcCCH
Confidence            2224788999999999999984     1 245799999999999999999999999999999 7775      4555543


Q ss_pred             HH---Hhc--------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          144 QE---VTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       144 ~e---~~~--------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      .|   +.+        .+.++|  |++++..+.+   +++|+|+++|++|.++|+|+++||+|.++
T Consensus       203 ~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  265 (266)
T 3k4o_A          203 NNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS  265 (266)
T ss_dssp             TTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred             HHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence            22   211        123444  9999988777   99999999999999999999999999985

>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3

Probab=99.97  E-value=8.8e-31  Score=216.81  Aligned_cols=189  Identities=14%  Similarity=0.109  Sum_probs=142.8

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh-hhhhHH--HHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-hH--HHH
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR-SSADYI--GMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-YI--RRR   75 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-~~~~~~--~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~~--~~~   75 (206)
                      +++|||||||...    ..++++++. ...+..  ...+.....+++..+|+++|+++..+...+..+.++. ++  .+.
T Consensus        38 ~~vVlVhgGg~~~----~~~~~g~~~~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i~~~~~~~~~~~~~~~~~~~  113 (251)
T 2ako_A           38 YEVILVTSAAISA----GHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNA  113 (251)
T ss_dssp             SEEEEEECCHHHH----HHHHCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHH
T ss_pred             CCEEEEECCHHHH----HHHHhCCccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEeccchhcCcceEehHHHH
Confidence            5799999999552    224456654 222322  2233333334456678889999876443322222221 22  377


Q ss_pred             HHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHH--HHhc
Q 028621           76 AVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTS  148 (206)
Q Consensus        76 l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~--e~~~  148 (206)
                      ++.+|++|.|||+++++     +.+++++|++|+++|.+|+||+|+|+|||||||++||+++|++++|+++++.  |+.+
T Consensus       114 i~~ll~~g~ipVi~~~d~v~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~  193 (251)
T 2ako_A          114 IDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQ  193 (251)
T ss_dssp             HHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC-
T ss_pred             HHHHHHCCCEEEEeCCCceeecceeecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHH
Confidence            88999999999999542     2357999999999999999999999999999999999999999999999998  7765


Q ss_pred             C--------CcCc--chHHHHHHHHhCCCcEEEEcCCCCchHHH--HhcCCCcceEEe
Q 028621          149 K--------DLSV--MDMTAITLCQENNIPVVVFNLNQPGNIAK--AIQGERVGTLIG  194 (206)
Q Consensus       149 ~--------g~~~--~k~~a~~~a~~~gi~v~I~~g~~~~~l~~--~l~g~~~GT~i~  194 (206)
                      +        +.++  +|++|+..|.++|++++|+|+++|++|.+  +|+|+..||+|.
T Consensus       194 ~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~~~l~~~~~~~g~~~GT~i~  251 (251)
T 2ako_A          194 ATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE  251 (251)
T ss_dssp             --------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHSCCCCSSEEEC
T ss_pred             HhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCChhhhhhhHHhcCCCCceEeC
Confidence            3        2343  48999999999999999999999999999  999999999984

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A

Probab=99.97  E-value=1.2e-30  Score=226.86  Aligned_cols=194  Identities=19%  Similarity=0.247  Sum_probs=122.8

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChh--hhhHH---HHHHHHHHHHHHHHHHHhCCCCceEe--cccccccccch-hH-
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRS--SADYI---GMLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEP-YI-   72 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~--~~~~~---~~~~~~~~~~ll~~~l~~~gi~a~~l--~~~~~~~v~~~-~~-   72 (206)
                      +++|||||||..+ ++   ++++++..  .++..   ...+.......+..+|+++|+++..+  +..++  .++. ++ 
T Consensus        43 ~~vVlV~gGgi~~-g~---~~lg~~~~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~qvllt~~d~--~~~~r~~n  116 (367)
T 2j5v_A           43 HRIVIVTSGAIAA-GR---EHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADM--EDRERFLN  116 (367)
T ss_dssp             CEEEEEECCHHHH-HH---HHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECGGGG--SSHHHHHH
T ss_pred             CcEEEEEcCHHHH-HH---HHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEecccc--cCceEEEh
Confidence            5899999999553 43   34566543  22322   23444444556677799999998752  22221  1211 22 


Q ss_pred             -HHHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--H
Q 028621           73 -RRRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--Q  144 (206)
Q Consensus        73 -~~~l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~  144 (206)
                       .+.++.+|+.|.|||+++++     +..+++||++|+++|.+++||+|+|+|||||||++||+++|++++|+++++  +
T Consensus       117 ~~~~i~~LL~~g~IPIv~end~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~  196 (367)
T 2j5v_A          117 ARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDD  196 (367)
T ss_dssp             HHHHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC-------------------------
T ss_pred             HHHHHHHHHHCCCEEEECCCCceecccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHH
Confidence             37888999999999998641     245799999999999999999999999999999999999999999999999  7


Q ss_pred             HHhcC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCcc
Q 028621          145 EVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV  201 (206)
Q Consensus       145 e~~~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~  201 (206)
                      |+.++        +.++|  |++|+..|.++|++++|+|+++|++|.++|+|+..||+|.++.....
T Consensus       197 e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~~~~~~  263 (367)
T 2j5v_A          197 ALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLE  263 (367)
T ss_dssp             -----------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCCSSCCC
T ss_pred             HHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcCccccc
Confidence            77654        34556  77999999999999999999999999999999999999998665533

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*

Probab=99.97  E-value=1e-30  Score=220.47  Aligned_cols=189  Identities=15%  Similarity=0.187  Sum_probs=134.3

Q ss_pred             eEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHH-HHHHHHHHHHHHHhCCCCceEecccccccccc---hhHHHHHHH
Q 028621            3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMSEVAE---PYIRRRAVR   78 (206)
Q Consensus         3 ~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~---~~~~~~l~~   78 (206)
                      ++|||||||++++.  ..+++++++.+.+.....+ ..+|..+.. +|+++|+++..+.+.+..+..+   ....+.++.
T Consensus        66 ~vViVhGgG~~~~~--~l~~~~~~~~~~~~~~~vt~g~l~~~l~~-~l~~~G~~a~~l~~~~~~~t~dg~~~~~~~~i~~  142 (286)
T 3d40_A           66 RMVLISGGGAFGHG--AIRDHDSTHAFSLAGLTEATFEVKKRWAE-KLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRD  142 (286)
T ss_dssp             SEEEEECCCCC--------------CCTTHHHHHHHHHHHHHHHH-HHHHTTCCEEECCGGGTEEEETTEEEECCSHHHH
T ss_pred             eEEEEECCHHHHHH--HHHHcCCCcccchhcchhhHHHHHHHHHH-HHHHcCCcEEEEEeecCCcccCCeEEehHHHHHH
Confidence            69999999999665  4455676655431111221 356665544 5888999999887765432100   001246889


Q ss_pred             HhhCCCEEEEeCCC-----CC-CCCCcHHHHHHHHHh-cCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC--
Q 028621           79 HLEKGRVVIFAAGT-----GN-PFFTTDTAAALRCAE-INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--  149 (206)
Q Consensus        79 ~l~~g~ipvi~g~~-----g~-~~~~sD~~A~~lA~~-l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--  149 (206)
                      +|++|.|||++|+.     |. +++++|++|+++|.+ |+||+|+|+|||||||++||+   ++++|+++++.|+.++  
T Consensus       143 lL~~g~IpVi~gd~~~~~~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~  219 (286)
T 3d40_A          143 VLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYA  219 (286)
T ss_dssp             HHHTTCEEEEECEEEEBTTSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHH
T ss_pred             HHHCcCEEEEcCCeEEcCCCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHH
Confidence            99999999999842     32 569999999999999 999999999999999999997   7899999998653221  


Q ss_pred             ---------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcC-----CCc-ceEEecCC
Q 028621          150 ---------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQG-----ERV-GTLIGGTW  197 (206)
Q Consensus       150 ---------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g-----~~~-GT~i~~~~  197 (206)
                               +.++|  |++|+..+.++|++++|+|+++|++|.++|++     +.+ ||.|..+.
T Consensus       220 ~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~~  284 (286)
T 3d40_A          220 ALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTTA  284 (286)
T ss_dssp             HHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC--
T ss_pred             hhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeecc
Confidence                     33556  78999999999999999999999999999999     776 99998754

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=99.97  E-value=1.6e-29  Score=223.50  Aligned_cols=185  Identities=22%  Similarity=0.296  Sum_probs=145.9

Q ss_pred             ceEEEEEc-CChhhhhhhhh-hc--CCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-hh-----
Q 028621            2 FQVAIVVG-GGNIFRGASAA-GN--SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-PY-----   71 (206)
Q Consensus         2 ~~~iiVhG-GG~~~~~~~~~-~~--~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~~-----   71 (206)
                      ++++|||| +|++.+..... ..  ...+...++.+.+.++.+|..+++.+|+++|+++.++++.++..+.. ++     
T Consensus        34 ~~~vvV~sa~g~~~~~ll~~~~~~~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v  113 (421)
T 3ab4_A           34 NDVVVVCSAMGDTTDELLELAAAVNPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARI  113 (421)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC---------------
T ss_pred             CCEEEEEcCCHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeee
Confidence            47888885 77775554321 11  23456677888888999999999999999999999999998754332 21     


Q ss_pred             ---HHHHHHHHhhCCCEEEEeCCC------CC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCccc
Q 028621           72 ---IRRRAVRHLEKGRVVIFAAGT------GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL  138 (206)
Q Consensus        72 ---~~~~l~~~l~~g~ipvi~g~~------g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i  138 (206)
                         ..+.++.+|++|.|||++|+.      |.    .++++|++|+++|.+|+||+|++||||||||++||+.+|++++|
T Consensus       114 ~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i  193 (421)
T 3ab4_A          114 VDVTPGRVREALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKL  193 (421)
T ss_dssp             --CCHHHHHHHHHTTCEEEC------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBC
T ss_pred             chhhHHHHHHHHhCCCEEEEeCCcCcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEc
Confidence               137788999999999999872      32    23589999999999999999999999999999999999999999


Q ss_pred             ccccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          139 DTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       139 ~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      ++++++|+.++   |.+++|++|+.+|.++|+|++|.|+++|          ..||+|.++
T Consensus       194 ~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~  244 (421)
T 3ab4_A          194 EKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS  244 (421)
T ss_dssp             SEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred             cccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence            99999998875   7888999999999999999999999987          479999876

>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2

Probab=99.97  E-value=2.3e-29  Score=213.55  Aligned_cols=187  Identities=17%  Similarity=0.193  Sum_probs=146.5

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHHH-HHHHHHHHHHHHHhCCCCceEeccccccc---
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMSE---   66 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~~-~~~~~~ll~~~l~~~gi~a~~l~~~~~~~---   66 (206)
                      +++|||||||++++.  ..+++++++           ..++.+.+.. ..+|..+ ..+|+++|++++.+++.+..+   
T Consensus        59 ~~vVlVhGgG~~i~~--~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~G~~~~~l-~~~l~~~g~~a~~~~~~~~~~l~~  135 (300)
T 2buf_A           59 INPVVVHGGGPQIGD--LLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDI-VNLINRHGGSAIGLTGKDAELIRA  135 (300)
T ss_dssp             CEEEEEECCCHHHHH--HHHHTTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHH-HHHHHHTTCCEEEEEETGGGCEEE
T ss_pred             CeEEEEECCcHHHHH--HHHHcCCCccccCCeecCCHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCEEEecCCCCCeeee
Confidence            589999999999764  456667653           2345554443 4666655 456889999999888764321   


Q ss_pred             ----------------------ccch-h-HHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEE
Q 028621           67 ----------------------VAEP-Y-IRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLK  117 (206)
Q Consensus        67 ----------------------v~~~-~-~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~  117 (206)
                                            +... + ..+.++.+|++|.|||+++.    .|..+ +++|++|+++|.+|+||+|+|
T Consensus       136 ~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~  215 (300)
T 2buf_A          136 KKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLML  215 (300)
T ss_dssp             EECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHTTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEE
T ss_pred             eeccccccchhhcccccccCCcceeEEEECHHHHHHHHHCCCEEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEE
Confidence                                  1110 1 14788899999999999964    34454 599999999999999999999


Q ss_pred             eeccCccccCCCCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCC
Q 028621          118 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGER  188 (206)
Q Consensus       118 ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~  188 (206)
                      +|||||||++      ++++|+++++.|+.++     +.++|  |++++..+.++|++ ++|+|++.|++| .++|++++
T Consensus       216 lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~  289 (300)
T 2buf_A          216 LTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSG  289 (300)
T ss_dssp             EESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTC
T ss_pred             EeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCC
Confidence            9999999986      3789999999988754     24456  78999999999998 999999999998 68999999


Q ss_pred             cceEEecCC
Q 028621          189 VGTLIGGTW  197 (206)
Q Consensus       189 ~GT~i~~~~  197 (206)
                      .||+|.++.
T Consensus       290 ~GT~i~~~~  298 (300)
T 2buf_A          290 VGTLISNRK  298 (300)
T ss_dssp             CSEEEECCC
T ss_pred             CceEEEeCC
Confidence            999998754

>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*

Probab=99.97  E-value=6.4e-30  Score=212.46  Aligned_cols=182  Identities=20%  Similarity=0.191  Sum_probs=143.2

Q ss_pred             eEEEEEcCChhhhhhhhhhcCCCCh--------hhhhHH----HHHHHHHHHHHHHHHHHhCCCCceEeccccccccc--
Q 028621            3 QVAIVVGGGNIFRGASAAGNSGLDR--------SSADYI----GMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--   68 (206)
Q Consensus         3 ~~iiVhGGG~~~~~~~~~~~~~l~~--------~~~~~~----~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~--   68 (206)
                      ++|||||||++++...  ++++++.        ...+.+    ..+++++|+.+++. |+++|+++.++++.+..++.  
T Consensus        37 ~vVvV~Ggg~~~~~ll--~~~g~~~~~~~glr~t~~~~l~~~~~~l~~~~n~~l~~~-l~~~G~~a~~l~~~~~~~~~~~  113 (258)
T 1gs5_A           37 PLVIVHGGGCVVDELM--KGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAW-AKKHQIAAVGLFLGDGDSVKVT  113 (258)
T ss_dssp             CEEEEECCHHHHHHHH--HHHTCCCCEETTEECBCHHHHHHHHHHHHTHHHHHHHHH-HHHTTCCEEEECTTGGGCEEEE
T ss_pred             eEEEEeCCcHHHHHHH--HHcCCCcceeCCEeeCCHHHHHHHHHHHhccchHHHHHH-HHHCCCCeEEEeecCCCEEEEE
Confidence            5899999999988643  3333332        122333    45677999999985 68899999999998753221  


Q ss_pred             ----------ch--hHHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCC
Q 028621           69 ----------EP--YIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRR  131 (206)
Q Consensus        69 ----------~~--~~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~  131 (206)
                                +.  ...+.++.+|++|.|||++|+    .|+. ++++|++|+++|.+|+|| ++++|||||||++|   
T Consensus       114 ~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d---  189 (258)
T 1gs5_A          114 QLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDGK---  189 (258)
T ss_dssp             ECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT---
T ss_pred             EcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCcCCCCCcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCC---
Confidence                      11  123678899999999999987    3443 689999999999999999 99999999999975   


Q ss_pred             CCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHH-hCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          132 NPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQ-ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       132 ~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~-~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                         +++|++++++|+.++     ..++|  |+.++..++ +.+++++|+|+++|++|.++|+|++.||+|.
T Consensus       190 ---~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~  257 (258)
T 1gs5_A          190 ---GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             ---SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             ---CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence               589999999988764     23445  777777665 5688999999999999999999999999996

>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2

Probab=99.97  E-value=1.9e-29  Score=212.18  Aligned_cols=185  Identities=20%  Similarity=0.229  Sum_probs=145.1

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHHH-HHHHHHHHHHHHHhCCCCceEecccccccc--
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMSEV--   67 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~~-~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v--   67 (206)
                      +++|||||||++++..  .++++++.           ..++.+.+.. ..+|..+ ..+|+++|++++++++.+...+  
T Consensus        54 ~~vVlVhGgG~~i~~~--~~~~~~~~~~~~g~r~t~~~~l~~~~~~~~G~~~~~l-~~~l~~~g~~a~~l~~~~~~~l~~  130 (282)
T 2bty_A           54 IKPIIVHGGGPAISQM--MKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEI-VMNLNLHGGRAVGICGKDSKLIVA  130 (282)
T ss_dssp             CEEEEEECCSHHHHHH--HHHHTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHH-HHHHHTTTCCEEEEETTGGGSEEE
T ss_pred             CcEEEEECCcHHHHHH--HHHcCCCccccCCcccCCHHHHHHHHHHHhhHHHHHH-HHHHHhCCCCceecChhhCCEEEE
Confidence            5899999999997553  45556543           3445544433 4667665 5578899999999887653221  


Q ss_pred             ------------cch-h-HHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 028621           68 ------------AEP-Y-IRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDN  128 (206)
Q Consensus        68 ------------~~~-~-~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~d  128 (206)
                                  ... + ..+.++.+|++|.|||++|+    .|..+ +++|++|+++|.+|+||+|+++|||||||++ 
T Consensus       131 ~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~v~~~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-  209 (282)
T 2bty_A          131 EKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD-  209 (282)
T ss_dssp             EECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-
T ss_pred             ecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECCCccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC-
Confidence                        110 1 14788999999999999985    34444 5999999999999999999999999999996 


Q ss_pred             CCCCCCCcccccccHHHHhcC---C--cCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEecC
Q 028621          129 PRRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT  196 (206)
Q Consensus       129 P~~~~~a~~i~~i~~~e~~~~---g--~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~~  196 (206)
                          |  ++|++++++|+.++   |  .++|  |++|+..+.++|++ ++|+|++.|++| .++|+++..||+|.++
T Consensus       210 ----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~  280 (282)
T 2bty_A          210 ----G--KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL  280 (282)
T ss_dssp             ----T--EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred             ----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence                2  89999999988754   2  3335  89999999999997 999999999998 6899999999999875

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=99.97  E-value=1.7e-29  Score=231.70  Aligned_cols=186  Identities=23%  Similarity=0.259  Sum_probs=156.4

Q ss_pred             ceEEEEEcC-Chhhhhhh-hhhcC--CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh------
Q 028621            2 FQVAIVVGG-GNIFRGAS-AAGNS--GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY------   71 (206)
Q Consensus         2 ~~~iiVhGG-G~~~~~~~-~~~~~--~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~------   71 (206)
                      ++++||||| |...+... .++++  ..+...++.+...|+++|+.+++.+|+++|++++++++++.+.+.+.+      
T Consensus        34 ~~vvvV~sa~G~~t~~ll~~~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~  113 (600)
T 3l76_A           34 NSLVVVVSAMGKSTDVLVDLAQQISPNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARI  113 (600)
T ss_dssp             CEEEEEECCSSTHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------C
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCcee
Confidence            579999999 88877654 23332  244566788888899999999999999999999999999876554321      


Q ss_pred             --H-HHHHHHHhhCCCEEEEeCCC-----CC------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcc
Q 028621           72 --I-RRRAVRHLEKGRVVIFAAGT-----GN------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL  137 (206)
Q Consensus        72 --~-~~~l~~~l~~g~ipvi~g~~-----g~------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~  137 (206)
                        + .+.++.+|++|.|||++||.     |.      .+++||++|+++|.+|+||+|++||||||||++||+.+|++++
T Consensus       114 ~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~  193 (600)
T 3l76_A          114 LEIRPDRLEHHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQL  193 (600)
T ss_dssp             CEEEECCHHHHHTTTCEEEEECEEEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCB
T ss_pred             ccccHHHHHHHHhCCCEEEEECCeecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeE
Confidence              1 25688899999999999863     21      2467899999999999999999999999999999999999999


Q ss_pred             cccccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          138 LDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       138 i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      |++++++|+.++   |.++|+++|+.+|.++|+|++|.|++++          ..||+|.++.
T Consensus       194 i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~----------~~GT~I~~~~  246 (600)
T 3l76_A          194 MAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD----------EPGTKVVAPP  246 (600)
T ss_dssp             CSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC----------SCCEEEECCC
T ss_pred             eeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC----------CCCeEEecCC
Confidence            999999998875   7889999999999999999999999875          4799998764

>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*

Probab=99.96  E-value=2.2e-28  Score=207.59  Aligned_cols=184  Identities=14%  Similarity=0.172  Sum_probs=140.2

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChh-----------hhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccc-------
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRS-----------SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR-------   63 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~-------   63 (206)
                      .++|||||||++++.  .+++++++++           .++.+.+....+|..++.. |++.|++++++++.-       
T Consensus        79 ~~~VvVHGgG~~i~~--~l~~~gi~~~~~~G~RvTd~~~l~vv~m~~~~vn~~lv~~-L~~~G~~Av~l~gg~~~a~~~~  155 (307)
T 3zzh_A           79 LYPIVLHGTGPQVNG--RLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTA-LEQLGVRARPITSGVFTADYLD  155 (307)
T ss_dssp             CCEEEEECCHHHHHH--HHHHTTCCCCEETTEECBCHHHHHHHHHHHHHHHHHHHHH-HHHTTCCEEEECSSSEEEEESC
T ss_pred             CCEEEEECCCHHHHH--HHHHcCCCccccCCeecCCHHHHHHHHHHHHHHHHHHHHH-HHhCCCCeeEEcCCcEEEEecC
Confidence            478999999999877  4566777643           3455655555899988765 778999999998721       


Q ss_pred             ---cccccchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 028621           64 ---MSEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP  133 (206)
Q Consensus        64 ---~~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~  133 (206)
                         ++++++..  ..+.++.+|++|.|||++|+    .|. .++++|++|+++|.+|+||+|+|+|||||||++     |
T Consensus       156 ~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~~g~~~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~  230 (307)
T 3zzh_A          156 KDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING-----S  230 (307)
T ss_dssp             HHHHBSBEEEEEECCHHHHHHHHHTCEEEECCCEECTTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET-----T
T ss_pred             ccccCccccccccCHHHHHHHHHCCCEEEEeCCeECCCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC-----C
Confidence               12222211  14788999999999999986    243 358999999999999999999999999999986     3


Q ss_pred             CCcccccccHHH-HhcC-----CcCcc--hHHHHHHHHh---CCCcEEEEcCCCCchH-HHHhcCCCcceEEecC
Q 028621          134 NARLLDTLTYQE-VTSK-----DLSVM--DMTAITLCQE---NNIPVVVFNLNQPGNI-AKAIQGERVGTLIGGT  196 (206)
Q Consensus       134 ~a~~i~~i~~~e-~~~~-----g~~~~--k~~a~~~a~~---~gi~v~I~~g~~~~~l-~~~l~g~~~GT~i~~~  196 (206)
                      ++++|+++++.| +.++     ..++|  |+++++.|.+   .+.+++|++   |+.+ .++|+++++||+|.+.
T Consensus       231 ~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g~GT~I~~~  302 (307)
T 3zzh_A          231 TGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG  302 (307)
T ss_dssp             TTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCCCSEEEECC
T ss_pred             CCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCCCcEEEecC
Confidence            589999999865 3332     23445  7776555544   478899998   7776 5789999999999975

>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=99.95  E-value=2.5e-28  Score=208.47  Aligned_cols=185  Identities=16%  Similarity=0.152  Sum_probs=139.4

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh-----hhhhHHHH-----HHHHHHHHHHHHHHHhCCCCc--------eEecccc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR-----SSADYIGM-----LATVMNAIFLQATMESIGIPT--------RVQTAFR   63 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----~~~~~~~~-----~~~~~~~~ll~~~l~~~gi~a--------~~l~~~~   63 (206)
                      +++|||||||++++..  .+++++.+     ..++.+.+     .+..++..+ +..|.++|+++        +.+++.|
T Consensus        47 ~~vVlVhGgg~~~~~~--~~~~~~~~~~t~~~~l~~~~~~~~G~i~~~l~~~l-~~~l~~~g~~a~~~~v~~qv~l~~~d  123 (316)
T 2e9y_A           47 WRSVITHGNGPQVGYL--SEAFEALPPERPRQPLYIATAMTQAWIGLLLKHSL-EEELRRRGLNVLVPVVISRVLVDVSD  123 (316)
T ss_dssp             CEEEEECCCHHHHHHH--HHHHHTSCTTSCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCCCCCEECCEEEECTTC
T ss_pred             CEEEEEcCCcHHHhHH--HHHcCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH-HHHHHhcCCCccccceeeEEEecccc
Confidence            5899999999997753  34455543     33555443     333566544 45577899997        5666665


Q ss_pred             c-------------------------ccc--cc-----------h-----hHHHHHHHHhhCCCEEEEeCCCCC------
Q 028621           64 M-------------------------SEV--AE-----------P-----YIRRRAVRHLEKGRVVIFAAGTGN------   94 (206)
Q Consensus        64 ~-------------------------~~v--~~-----------~-----~~~~~l~~~l~~g~ipvi~g~~g~------   94 (206)
                      .                         +++  .+           |     ...+.++.+|++|.|||++|+.|.      
T Consensus       124 ~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~~~~  203 (316)
T 2e9y_A          124 PSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERP  203 (316)
T ss_dssp             GGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEEECT
T ss_pred             ccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCeeECC
Confidence            2                         121  11           1     125788999999999999864322      


Q ss_pred             --------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC------CcCcc--hHHH
Q 028621           95 --------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTA  158 (206)
Q Consensus        95 --------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------g~~~~--k~~a  158 (206)
                              .++++|++|+++|.+|+||+|+|+|||||||+ ||+ +|++++|++++++|+.++      +.++|  |+++
T Consensus       204 ~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~a  281 (316)
T 2e9y_A          204 GGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAASELKKYLREGHFPPGSMGPKVEA  281 (316)
T ss_dssp             TSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHH
T ss_pred             CCCeecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHH
Confidence                    23599999999999999999999999999999 784 788999999999888754      22444  9999


Q ss_pred             HHHHHhCCC-cEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          159 ITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       159 ~~~a~~~gi-~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      |..+.++|+ +++|++   +++|.++|+| ..||+|.+
T Consensus       282 a~~a~~~gv~~v~I~~---~~~l~~~l~g-~~GT~i~~  315 (316)
T 2e9y_A          282 AISFVERTGKPAVIGS---LEEARQVLSL-QAGTVVML  315 (316)
T ss_dssp             HHHHHHHHCSCEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred             HHHHHHcCCCeEEECc---HHHHHHHHcC-CCCeEEec
Confidence            999999999 799997   6779999998 79999975

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=99.95  E-value=1.2e-27  Score=215.48  Aligned_cols=165  Identities=22%  Similarity=0.275  Sum_probs=142.1

Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-h---------h---HHHHHHH-HhhCCCEEEEe
Q 028621           24 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P---------Y---IRRRAVR-HLEKGRVVIFA   89 (206)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~---------~---~~~~l~~-~l~~g~ipvi~   89 (206)
                      ..+++..|.+.+.|+++|+.+++.+|+++|+++.++++.+++.+.+ .         .   ..+.+.+ +++.|.|||++
T Consensus       134 ~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~  213 (510)
T 2cdq_A          134 ELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVT  213 (510)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEe
Confidence            3466778999999999999999999999999999999999844321 1         1   2355554 67899999999


Q ss_pred             CCCC----C------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchH
Q 028621           90 AGTG----N------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDM  156 (206)
Q Consensus        90 g~~g----~------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~  156 (206)
                      ||.|    +      .+++||++|+.+|.+|+|+++++||||||||++||+.+|++++|++++++|+.++   |.++|++
T Consensus       214 Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~  293 (510)
T 2cdq_A          214 GFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHP  293 (510)
T ss_dssp             SSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCH
T ss_pred             CccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHH
Confidence            9632    1      2466999999999999999999999999999999999999999999999998876   7889999


Q ss_pred             HHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          157 TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       157 ~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      +|+.+|.++|+|++|.|+++|+         ..||+|.++.
T Consensus       294 ~a~~~a~~~gIpv~I~n~~~p~---------~~GT~I~~~~  325 (510)
T 2cdq_A          294 QSMRPAREGEIPVRVKNSYNPK---------APGTIITKTR  325 (510)
T ss_dssp             HHHHHHHHHTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred             HHHHHHHHCCCeEEEEccCcCC---------CCCeEEeccc
Confidence            9999999999999999999986         5899999753

>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*

Probab=99.95  E-value=1.2e-27  Score=203.72  Aligned_cols=117  Identities=19%  Similarity=0.211  Sum_probs=101.2

Q ss_pred             HHHHHHHhhCCCEEEEeCCCCC-----------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccc
Q 028621           73 RRRAVRHLEKGRVVIFAAGTGN-----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL  141 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~g~-----------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i  141 (206)
                      .+.++.+|++|.|||++|+.|.           .++|+|++|+++|.+|+||+|+|+|||||||+ || .+|++++|+++
T Consensus       172 ~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i  249 (310)
T 2we5_A          172 AETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNV  249 (310)
T ss_dssp             HHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEE
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEE
Confidence            5789999999999999965332           24899999999999999999999999999999 77 48889999999


Q ss_pred             cHHHHhcC--------CcCcchHHHHHHHHhCCC--cEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          142 TYQEVTSK--------DLSVMDMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       142 ~~~e~~~~--------g~~~~k~~a~~~a~~~gi--~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +++|+.++        |.+..|++||..+.++|+  +++|++   +++|.++|+|+..||+|.
T Consensus       250 ~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~  309 (310)
T 2we5_A          250 TVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT  309 (310)
T ss_dssp             EHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred             cHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence            99988754        223349999999999999  799996   677889999998999996

>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*

Probab=99.95  E-value=8.1e-27  Score=207.29  Aligned_cols=184  Identities=14%  Similarity=0.171  Sum_probs=140.6

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHHHHhCCCCceEeccc--------
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQATMESIGIPTRVQTAF--------   62 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~--------   62 (206)
                      .++|||||||++++.  .++++|+++++           ++.+.+....+|..++.. |+++|++++++++.        
T Consensus        79 ~~~VvVHGgG~~i~~--~l~~~gi~~~f~~G~RvTd~~tl~vv~mv~~~vn~~lv~~-L~~~G~~Avglsgg~~~a~~~~  155 (464)
T 4ab7_A           79 LYPIVLHGTGPQVNG--RLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTA-LEQLGVRARPITSGVFTADYLD  155 (464)
T ss_dssp             CCCEEEECCCHHHHH--HHHHTTCCCCEETTEECBCHHHHHHHHHHHHHHHHHHHHH-HHHTTCCEEEECSSSEEEEESC
T ss_pred             CeEEEEECCcHHHHH--HHHHcCCCccccCCeecCCHHHHHHHHHHHHHHHHHHHHH-HHhCCCCeEEECCCcEEEEecC
Confidence            468999999999877  45667776432           455666556899888775 77899999999862        


Q ss_pred             --ccccccchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 028621           63 --RMSEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP  133 (206)
Q Consensus        63 --~~~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~  133 (206)
                        +++++++..  ..+.++.+|++|.|||++|+    .|.. ++++|++|+.+|.+|+|++|+|+|||||||++     |
T Consensus       156 ~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~~g~~~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~  230 (464)
T 4ab7_A          156 KDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING-----S  230 (464)
T ss_dssp             TTTTBSBEEEEEECCHHHHHHHHTTCEEEEESEEECTTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT-----T
T ss_pred             ccccCCcCcccccCHHHHHHHHHCCcEEEEcCCcCCCCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC-----C
Confidence              122222211  14788999999999999985    3433 58999999999999999999999999999986     3


Q ss_pred             CCcccccccHHH-HhcC-----CcCcc--hHHHHHHHHhC---CCcEEEEcCCCCchH-HHHhcCCCcceEEecC
Q 028621          134 NARLLDTLTYQE-VTSK-----DLSVM--DMTAITLCQEN---NIPVVVFNLNQPGNI-AKAIQGERVGTLIGGT  196 (206)
Q Consensus       134 ~a~~i~~i~~~e-~~~~-----g~~~~--k~~a~~~a~~~---gi~v~I~~g~~~~~l-~~~l~g~~~GT~i~~~  196 (206)
                      ++++|++++..| +.++     ..++|  |+++++.|.+.   +.+++|++   ++.+ .++|+++++||+|.++
T Consensus       231 ~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~  302 (464)
T 4ab7_A          231 TGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG  302 (464)
T ss_dssp             TCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCTTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred             CCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcccCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence            579999999875 3322     23445  77877666654   77899998   5655 4789999999999987

>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*

Probab=99.95  E-value=1e-26  Score=207.24  Aligned_cols=186  Identities=17%  Similarity=0.149  Sum_probs=141.8

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHHHHHHHHHHHHHHHHhCCCCc----eEeccccccc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGMLATVMNAIFLQATMESIGIPT----RVQTAFRMSE   66 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~ll~~~l~~~gi~a----~~l~~~~~~~   66 (206)
                      +++|||||||++++.  ..+++++..           ..++.+.+....+|..+++ .|+ +|+++    +.+++.+...
T Consensus        75 ~~vvlVhggg~~~~~--~~~~~~~~~~~~~g~r~t~~~~l~~~~~~~G~~~~~l~~-~l~-~g~~~~~~~~~l~~~~~~~  150 (456)
T 3d2m_A           75 IRLVLIHGAYHFLDR--LAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEA-ALC-GSVSGFARAPSVPLVSGNF  150 (456)
T ss_dssp             CEEEEEECCHHHHHT--TTTTTTCCCCCGGGCCCBCHHHHHHHHHHHHHHHHHHHH-HHH-TC--------CCCEECCSC
T ss_pred             CeEEEEeCCcHHHHH--HHHHCCCCCEeeCCeecCCHHHHHHHHHHHhHHHHHHHH-HHh-cccccCCCccceeeccCcE
Confidence            579999999999655  345566553           3345554445688887766 577 88888    6666665322


Q ss_pred             cc----------------ch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 028621           67 VA----------------EP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDG  123 (206)
Q Consensus        67 v~----------------~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~G  123 (206)
                      +.                +.  ...+.++.+|++|.|||++|+    .|. .++++|++|+++|.+|+||+|+|+|||||
T Consensus       151 ~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipIi~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdG  230 (456)
T 3d2m_A          151 LTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDG  230 (456)
T ss_dssp             EEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSS
T ss_pred             EEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEEECCcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCcc
Confidence            11                11  114789999999999999985    343 35899999999999999999999999999


Q ss_pred             cccCCCCCCCCCcccccccHHHHhcC---CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEecC
Q 028621          124 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT  196 (206)
Q Consensus       124 v~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~~  196 (206)
                      ||++      ++++|+++++.|+.++   |.++|  |++||..|.+.|++ ++|+|+++|++| .+++++++.||+|.++
T Consensus       231 v~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~  304 (456)
T 3d2m_A          231 ISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKE  304 (456)
T ss_dssp             CBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECC
T ss_pred             ccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecc
Confidence            9986      4789999999887754   33445  88999999999995 999999999998 5788999999999875


Q ss_pred             C
Q 028621          197 W  197 (206)
Q Consensus       197 ~  197 (206)
                      .
T Consensus       305 ~  305 (456)
T 3d2m_A          305 A  305 (456)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*

Probab=99.94  E-value=5.7e-27  Score=208.44  Aligned_cols=186  Identities=17%  Similarity=0.190  Sum_probs=144.5

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChh-----------hhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccc------
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRS-----------SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM------   64 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~------   64 (206)
                      .++|||||||++++.  .+++++++++           .++.+.+....+|..|++ +|++.|++++++++..+      
T Consensus        89 ~~~VvVHGgG~~i~~--~l~~~gi~~~f~~G~RvTd~~~l~vv~~~lg~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~  165 (460)
T 3s6g_A           89 LTPVVVHGGGPQLDA--ALEAADIPTERVDGLRVTRDEAMPIIRDTLTQANLALVD-AIRDAGGRAAAVPRGVFEADIVD  165 (460)
T ss_dssp             CCCEEEECCHHHHHH--HHHHHSCCCCCCSSSCCBCTTTHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSEEEEESC
T ss_pred             CcEEEEECCChHHHH--HHHHcCCCccccCCccCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceEEecCeEEEEEec
Confidence            468999999999776  4566666543           345555544599999988 47889999999988322      


Q ss_pred             ----ccccchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 028621           65 ----SEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP  133 (206)
Q Consensus        65 ----~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~  133 (206)
                          +.+++..  ..+.++.+|++|.|||++|+    .|.. ++++|++|+++|.+|+||+|+|+|||||||++      
T Consensus       166 ~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------  239 (460)
T 3s6g_A          166 ADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDE------  239 (460)
T ss_dssp             TTTTBSEEEEEEECCHHHHHHHHTTCEEEEECEEECTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCT------
T ss_pred             CcccCccCcceEEcHHHHHHHHHCCcEEEEECceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCC------
Confidence                1122111  14789999999999999975    3433 58999999999999999999999999999985      


Q ss_pred             CCcccccccHH-HHhcC-----CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHH-HHhcCCCcceEEecC
Q 028621          134 NARLLDTLTYQ-EVTSK-----DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLIGGT  196 (206)
Q Consensus       134 ~a~~i~~i~~~-e~~~~-----g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~-~~l~g~~~GT~i~~~  196 (206)
                      ++++|++++.. |+.++     ..++|  |++++..+.+.+.+++|++++.|+.|. ++++++++||+|.++
T Consensus       240 ~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~  311 (460)
T 3s6g_A          240 DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG  311 (460)
T ss_dssp             TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred             CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence            36899999985 55433     23444  999998888744469999999999986 789999999999986

>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1

Probab=99.94  E-value=1.1e-26  Score=198.21  Aligned_cols=185  Identities=17%  Similarity=0.252  Sum_probs=133.5

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCC-------CChhhhhHHHH-----HHHHHHHHHHHHHHHhCCCCc--------eEecc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSG-------LDRSSADYIGM-----LATVMNAIFLQATMESIGIPT--------RVQTA   61 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~-------l~~~~~~~~~~-----~~~~~~~~ll~~~l~~~gi~a--------~~l~~   61 (206)
                      +++|||||||+++....  ++++       .++..++...+     +...++..+ +..|+++|+++        +.+++
T Consensus        45 ~~vVlVhGgg~~i~~~l--~~~~~~~~~~~~~~~~l~~~~a~~~G~i~~~l~~~l-~~~l~~~gi~a~~~~~~~qv~l~~  121 (314)
T 1e19_A           45 YEVVITHGNGPQVGSLL--LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQAL-KNELRKRGMEKKVVTIITQTIVDK  121 (314)
T ss_dssp             CEEEEECCCHHHHHHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCCCEEEBCCEEEECT
T ss_pred             CeEEEEeCChHHHhHHH--HhccCccccCCCChhHHHHHHHHHhhHHHHHHHHHH-HHHHHHcCCchhhhhhheeeeecc
Confidence            58999999999965432  3333       23334444432     333564444 44578899987        55666


Q ss_pred             ccc-------------------------ccc--cc-------------h---hHHHHHHHHhhCCCEEEEeCCCCC----
Q 028621           62 FRM-------------------------SEV--AE-------------P---YIRRRAVRHLEKGRVVIFAAGTGN----   94 (206)
Q Consensus        62 ~~~-------------------------~~v--~~-------------~---~~~~~l~~~l~~g~ipvi~g~~g~----   94 (206)
                      .|.                         +++  ++             +   ...+.++.+|++|.|||++|+.|.    
T Consensus       122 ~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~~  201 (314)
T 1e19_A          122 NDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVIL  201 (314)
T ss_dssp             TCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEE
T ss_pred             cchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeEE
Confidence            551                         111  11             0   024678999999999998754221    


Q ss_pred             ---------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC------CcCcc--hHH
Q 028621           95 ---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMT  157 (206)
Q Consensus        95 ---------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------g~~~~--k~~  157 (206)
                               .++++|++|+++|.+|+||+|+|+|||||||++||  +|++++|++++++|+.++      +.++|  |++
T Consensus       202 ~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~  279 (314)
T 1e19_A          202 EDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVL  279 (314)
T ss_dssp             ETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHH
T ss_pred             CCCCcceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHHHHHHhCCCcCCCChHHHHH
Confidence                     25889999999999999999999999999999998  588999999999988754      23445  888


Q ss_pred             HHHH-HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          158 AITL-CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       158 a~~~-a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +|.. +.+.+++++|++.   +.|.++|+| +.||+|.+
T Consensus       280 aa~~~~~~~~~~v~I~~~---~~l~~~~~g-~~GT~i~~  314 (314)
T 1e19_A          280 AAIRFIEWGGERAIIAHL---EKAVEALEG-KTGTQVLP  314 (314)
T ss_dssp             HHHHHHHHTCSEEEEEEG---GGHHHHHTT-SSSEEEEC
T ss_pred             HHHHHHHhCCCeEEEecH---HHHHHHHcC-CCCeEEcC
Confidence            8866 4556778999984   568899998 48999974

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=99.94  E-value=2.6e-26  Score=203.77  Aligned_cols=155  Identities=20%  Similarity=0.258  Sum_probs=133.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch------hHHHHHHHHhhCCCEEEEeCCCC---------
Q 028621           29 SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP------YIRRRAVRHLEKGRVVIFAAGTG---------   93 (206)
Q Consensus        29 ~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~------~~~~~l~~~l~~g~ipvi~g~~g---------   93 (206)
                      ..|.+.+.||++|+.+++.+|     ++.++++++++.+++.      ...+.++.+|+.|.|||++||.|         
T Consensus       108 ~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~t  182 (446)
T 3tvi_A          108 SSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKT  182 (446)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC--CBCHHHHHHHHHHHTTTCSSEECCCSEEECTTSCEEE
T ss_pred             cHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCCCCceehHhhHHHHHHHHhcCCeEEeeCceecCCCCCeEE
Confidence            468888999999999999986     4788888888776542      23578899999999999999732         


Q ss_pred             CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHHhCCCcEE
Q 028621           94 NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVV  170 (206)
Q Consensus        94 ~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~  170 (206)
                      ..+++||++|+.+|.+|+|+++++||||||||++||+.+|++++|++++++|+.++   |.++||++|+.+|.++|+|++
T Consensus       183 l~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~  262 (446)
T 3tvi_A          183 FSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPIN  262 (446)
T ss_dssp             CSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEE
T ss_pred             EccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEE
Confidence            13578999999999999999999999999999999999999999999999999876   778899999999999999999


Q ss_pred             EEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          171 VFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       171 I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      |.|+++|+         ..||+|.++.
T Consensus       263 i~~~~~p~---------~~GT~i~~~~  280 (446)
T 3tvi_A          263 IKNTNKPS---------DPGTLILSDT  280 (446)
T ss_dssp             EEETTBTT---------SCCEEEECTT
T ss_pred             EecCCCCC---------CCCEEEecCC
Confidence            99999986         5799999764

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=99.94  E-value=3e-26  Score=203.83  Aligned_cols=161  Identities=19%  Similarity=0.235  Sum_probs=136.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch------h---H----HHHHHHHhhCCCEEEEeCCCC
Q 028621           27 RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP------Y---I----RRRAVRHLEKGRVVIFAAGTG   93 (206)
Q Consensus        27 ~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~------~---~----~~~l~~~l~~g~ipvi~g~~g   93 (206)
                      ++..|.+.+.|+.+|+.+++.+|+++|+++.++++.++....+.      +   .    .+.++.+++ +.|||++||.|
T Consensus       108 ~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~IpVv~Gf~g  186 (449)
T 2j0w_A          108 PALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLN-EGLVITQGFIG  186 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCTTSCCBCHHHHHHHHHHHTHHHHH-HSEEEEESSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCCCCCccccHhHhHHHHHHHHHHHhc-CCEEEEeCCee
Confidence            56678999999999999999999999999999999998433211      1   1    224445554 44999998733


Q ss_pred             -----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHH
Q 028621           94 -----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITL  161 (206)
Q Consensus        94 -----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~  161 (206)
                           .    .+++||++|+++|.+|+|++|++||||||||++||+.+|++++|++++++|+.++   |.++++++|+.+
T Consensus       187 ~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~  266 (449)
T 2j0w_A          187 SENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLP  266 (449)
T ss_dssp             ECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHH
T ss_pred             eCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHH
Confidence                 1    2567999999999999999999999999999999999999999999999998875   777888899999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      |.+.|+|++|.|+++|+         ..||+|.++.
T Consensus       267 a~~~gi~v~I~~~~~p~---------~~GT~I~~~~  293 (449)
T 2j0w_A          267 AVRSDIPVFVGSSKDPR---------AGGTLVCNKT  293 (449)
T ss_dssp             HHHHTCCEEEEESSCTT---------SCCEEEESCC
T ss_pred             HHHCCCeEEEEECCCCC---------CCeeEEeccc
Confidence            99999999999999986         6899999764

>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}

Probab=99.94  E-value=5e-26  Score=190.85  Aligned_cols=172  Identities=20%  Similarity=0.251  Sum_probs=134.0

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEecccccccccc
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE   69 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~   69 (206)
                      +++|||||||++++.  ..+++++++++           ++.+.+ ++.++|..+.+ +|+++|+++..+++.+..++..
T Consensus        67 ~~vVlVhgGg~~i~~--~l~~lg~~~~~~~G~Rvtd~~~l~~v~~~l~G~ln~~i~~-~L~~~G~~a~~l~g~dg~llta  143 (279)
T 3l86_A           67 KQLVIVHGGGFAINK--LMEENQVPVKKINGLRVTSKDDMVLVSHALLDLVGKNLQE-KLRQAGVSCQQLKSDIKHVVAA  143 (279)
T ss_dssp             CEEEEEECCHHHHHH--HHHHTTCCCCEETTEECBCHHHHHHHHHHHHHTTHHHHHH-HHHHTTCCEEECSGGGGGTEEE
T ss_pred             CcEEEEECCHHHHHH--HHHHcCCCCccCCCcccCcHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCEEEEecCcCCEEEe
Confidence            589999999999766  45667776543           233322 44577777766 5888999999999888544431


Q ss_pred             h------h---------HHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 028621           70 P------Y---------IRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNP  129 (206)
Q Consensus        70 ~------~---------~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP  129 (206)
                      .      +         ..+.++.+|++|.|||++|.    .|..+ +++|++|+++|.+|+||+|+|+|||||||+   
T Consensus       144 ~~~~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~v~~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~---  220 (279)
T 3l86_A          144 DYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLE---  220 (279)
T ss_dssp             EESCHHHHBSBEEEEEECHHHHHHHHHTTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEE---
T ss_pred             eccCccccCcccccchhhHHHHHHHHhCCcEEEECCcEECCCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCcccc---
Confidence            0      1         25789999999999999983    34443 699999999999999999999999999995   


Q ss_pred             CCCCCCcccccccHHHHhcC-----CcCc--chHHHHHHHHhCCCc-EEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          130 RRNPNARLLDTLTYQEVTSK-----DLSV--MDMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       130 ~~~~~a~~i~~i~~~e~~~~-----g~~~--~k~~a~~~a~~~gi~-v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                          ++++|++++++|+.++     ..++  .|++||..|.+.|++ ++|+|++.+            ||+|..
T Consensus       221 ----d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~------------GT~i~~  278 (279)
T 3l86_A          221 ----NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLT------------GTLITA  278 (279)
T ss_dssp             ----TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEESSSSC------------SEEEEC
T ss_pred             ----CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEeccCCC------------CeEEec
Confidence                3689999999877653     2344  499999999999997 999998742            999975

>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.9e-26  Score=205.28  Aligned_cols=186  Identities=15%  Similarity=0.196  Sum_probs=143.1

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChh-----------hhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccc------
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRS-----------SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM------   64 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~------   64 (206)
                      .++|||||||++++.  .+++++++++           .++.+.+....+|..|++ +|++.|++++++++..+      
T Consensus        92 ~~~VvVHGgg~~i~~--~l~~~gi~~~f~~G~RvTd~~~l~vv~~~~g~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~  168 (467)
T 3s6k_A           92 LTPIVLHGAGPQLDA--ELSAAGIEKQTVNGLRVTSPHALAIVRKVFQASNLKLVE-ALQQNGARATSITGGVFEAEYLN  168 (467)
T ss_dssp             CCCCCCCCCCHHHHH--HHHTTSCCCCCCSSSCCBCHHHHHHHHHHHHHHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSC
T ss_pred             CcEEEEECCChHHHH--HHHHcCCCccccCCccCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceEEcCccEEEEecc
Confidence            468999999999777  4566776643           245555544599999988 47789999999887332      


Q ss_pred             ----ccccchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 028621           65 ----SEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP  133 (206)
Q Consensus        65 ----~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~  133 (206)
                          +++++..  ..+.++.+|++|.|||+++.    .|. .++++|++|+.+|.+|+||+|+|+|||||||+++     
T Consensus       169 ~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~-----  243 (467)
T 3s6k_A          169 RDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDAE-----  243 (467)
T ss_dssp             SSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCCCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCSS-----
T ss_pred             CcccCccceEEEEcHHHHHHHHHCCCEEEEECceECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCCC-----
Confidence                1122211  14788999999999999953    243 3589999999999999999999999999999853     


Q ss_pred             CCcccccccHH-HHhcC-----CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHH-HHhcCCCcceEEecC
Q 028621          134 NARLLDTLTYQ-EVTSK-----DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLIGGT  196 (206)
Q Consensus       134 ~a~~i~~i~~~-e~~~~-----g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~-~~l~g~~~GT~i~~~  196 (206)
                       +++|++++.. |+.++     ..++|  |++++..+.+.+.++++++++.|+.|. ++++++++||+|.+.
T Consensus       244 -~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~  314 (467)
T 3s6k_A          244 -GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG  314 (467)
T ss_dssp             -CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred             -CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence             5788888874 43322     23444  999998888754469999999999986 689999999999876

>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}

Probab=99.90  E-value=9.8e-24  Score=178.45  Aligned_cols=118  Identities=19%  Similarity=0.262  Sum_probs=97.0

Q ss_pred             HHHHHHHhhCCCEEEEeCCCCC-------------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           73 RRRAVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~g~-------------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                      .+.|+.+|++|.|||++|+.|.             .++|+|++|+.+|.+|+||+|+|+|||||||+ ||+ .|++++|+
T Consensus       178 ~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~  255 (317)
T 3kzf_A          178 YGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLE  255 (317)
T ss_dssp             HHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECC
T ss_pred             HHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECc
Confidence            3788899999999777754332             25789999999999999999999999999999 887 68899999


Q ss_pred             cccHHHHhcC------CcCcc--hHHHHHHHHhCC-CcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621          140 TLTYQEVTSK------DLSVM--DMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGGT  196 (206)
Q Consensus       140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~g-i~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  196 (206)
                      +++++|+.++      +.+.|  |+++|..+.+.+ .+++|+|+   +.+.++|+|+ .||+|.++
T Consensus       256 ~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G~-~GT~I~~d  317 (317)
T 3kzf_A          256 EIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNGK-CGTRIIKD  317 (317)
T ss_dssp             EEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTTS-SSEEEECC
T ss_pred             CcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCCC-CCeEEecC
Confidence            9999887753      23444  999999887655 57999995   5678999998 89999874

>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}

Probab=99.90  E-value=1e-22  Score=174.31  Aligned_cols=117  Identities=22%  Similarity=0.297  Sum_probs=95.2

Q ss_pred             HHHHHHHhhCCCEEEEeCCC------------C-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           73 RRRAVRHLEKGRVVIFAAGT------------G-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~~------------g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                      .+.+..++++|.|||++|..            | ..++++|.+|+.+|.+++||+|+|+|||||||+++|+  |++++|+
T Consensus       193 ~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~  270 (332)
T 4axs_A          193 IDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALK  270 (332)
T ss_dssp             HHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECS
T ss_pred             HHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhcc
Confidence            47788999999998876531            1 2369999999999999999999999999999998874  7789999


Q ss_pred             cccHHHHhcC------CcCcc--hHHHHHHHHhCCC--cEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          140 TLTYQEVTSK------DLSVM--DMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~gi--~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +++.+|+.++      +.++|  |++||..+.+.|.  .++|.+   ++.+.+++.|+ .||+|..
T Consensus       271 ~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g~-~GT~IvA  332 (332)
T 4axs_A          271 TVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKGL-SGTKIIA  332 (332)
T ss_dssp             SCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTTS-SSEEEBC
T ss_pred             cCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCCC-CCcEEeC
Confidence            9999988753      33444  9999999998876  355544   67789999997 7999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d2a1fa1	236	c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi	7e-42
d2ij9a1	219	c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog	2e-38
d1ybda1	236	c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri	8e-38
d1z9da1	238	c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc	3e-35
d2brxa1	225	c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc	2e-28
d2cdqa1	304	c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar	2e-19
d2hmfa1	302	c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja	6e-18
d2j0wa1	292	c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli	3e-17
d2akoa1	250	c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobact	6e-11

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

 Score =  139 bits (350), Expect = 7e-42
 Identities = 81/188 (43%), Positives = 125/188 (66%)

Query: 6   IVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 65
            VV GG      +    +G++R   D++GMLATVMN + ++ ++    +  ++ +AF+++
Sbjct: 48  SVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLN 107

Query: 66  EVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVY 125
            + + Y    A++ L + RVVIF+AGTGNPFFTTD+ A LR  EI A+VVLKAT VDGVY
Sbjct: 108 GICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVY 167

Query: 126 DDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 185
           D +P +NP+A+L   L+Y EV  K+L VMD++A TL +++ +P+ VFN+ +PG + + + 
Sbjct: 168 DCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVT 227

Query: 186 GERVGTLI 193
           G   GT I
Sbjct: 228 GTEEGTTI 235

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  129 bits (326), Expect = 2e-38
 Identities = 65/201 (32%), Positives = 93/201 (46%), Gaps = 26/201 (12%)

Query: 3   QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           QV +VVGGG + R    +A   G   +  DYIG+ AT +NA+ L + + S          
Sbjct: 34  QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKV----- 88

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
                   P     A    +  RVV+   G   P  TTD  AAL    I A+V + ATNV
Sbjct: 89  --------PVDFMEAEELSKLYRVVVM--GGTFPGHTTDATAALLAEFIKADVFINATNV 138

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDL---------SVMDMTAITLCQENNIPVVVF 172
           DGVY  +P+ + +A   D L+ Q++               V+D+ A  + + + I   V 
Sbjct: 139 DGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVI 198

Query: 173 NLNQPGNIAKAIQGERVGTLI 193
               P NI KA++GE VGT+I
Sbjct: 199 L-GTPENIMKAVKGEAVGTVI 218

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

 Score =  129 bits (323), Expect = 8e-38
 Identities = 107/191 (56%), Positives = 146/191 (76%), Gaps = 1/191 (0%)

Query: 3   QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
           QV IVVGGGNIFRG SA     +DR++ADY+GM+ATVMNA+ L+   E++GI  RVQ+A 
Sbjct: 45  QVGIVVGGGNIFRGVSA-QAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSAL 103

Query: 63  RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
            M ++AE Y R +A+++LE+G+VVIFAAGTGNPFFTTDTAAALR AE+N +V+LKATNVD
Sbjct: 104 SMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVD 163

Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
           GVY  +P+++P+A   +T+T+ E   K+L VMD TA  LC+E  + +VVF + + G++ +
Sbjct: 164 GVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKR 223

Query: 183 AIQGERVGTLI 193
            I GE  GTL+
Sbjct: 224 VITGEDEGTLV 234

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  122 bits (306), Expect = 3e-35
 Identities = 98/196 (50%), Positives = 138/196 (70%), Gaps = 2/196 (1%)

Query: 1   MFQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT 60
             Q+A+V+GGGN++RG   A ++G+DR  ADY GML TVMNA+ +  +++  G+ TRVQT
Sbjct: 43  GVQIALVIGGGNLWRG-EPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQT 101

Query: 61  AFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI-NAEVVLKAT 119
           A  M  VAEPYIR RA+RHLEK R+V+F AG G+P+F+TDT AALR AEI    +++   
Sbjct: 102 AIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKN 161

Query: 120 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 179
            VDGVY+ +P+++ NA   D LT+ EV  + L +MD TA TL  +N+I +VVFN+N+ GN
Sbjct: 162 GVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGN 221

Query: 180 IAKAIQGERVGTLIGG 195
           I + + GE +GT +  
Sbjct: 222 IQRVVFGEHIGTTVSN 237

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  104 bits (259), Expect = 2e-28
 Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 24/201 (11%)

Query: 3   QVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
           +VA+VVGGG + R     A       +  D+IG+  T  NA+ L A +            
Sbjct: 37  EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREK--------- 87

Query: 62  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
                V E +        L+K    I   G  +P  TTD  AAL    + A++++  TNV
Sbjct: 88  -AYPVVVEDFWEAWKAVQLKK----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNV 142

Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTS---------KDLSVMDMTAITLCQENNIPVVVF 172
           DGVY  +P+++P A+ +  +  +E+              SV+D  A  +   + I  +V 
Sbjct: 143 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 202

Query: 173 NLNQPGNIAKAIQGERVGTLI 193
                 ++ + I+G+  GT I
Sbjct: 203 GKEDAKDLFRVIKGDHNGTTI 223

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.2 bits (202), Expect = 2e-19
 Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 36/199 (18%)

Query: 29  SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV--------------AEPYIRR 74
           + DY+      ++     A + +IG+  R   AF +  +                   +R
Sbjct: 115 TRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKR 174

Query: 75  RAVRHLEKGRVVIFAAGTGN----------PFFTTDTAAALRCAEINAEVVLKATNVDGV 124
                +    V I     G               +D  A      +  + +    +VDGV
Sbjct: 175 LYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGV 234

Query: 125 YDDNPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
              +P     A  +  LT+ E          V+   ++   +E  IPV V N   P    
Sbjct: 235 LTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNP---- 290

Query: 182 KAIQGERVGTLIGGTWNST 200
                +  GT+I  T + T
Sbjct: 291 -----KAPGTIITKTRDMT 304

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 78.0 bits (191), Expect = 6e-18
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 31/188 (16%)

Query: 28  SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE----------PYIRRRAV 77
            S DYI      +++  L   +  +G  +          + +            ++ R +
Sbjct: 119 KSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLL 178

Query: 78  RHLEKGRVVIFAAGTGN---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 128
             L++G + +     G              +D +AAL    ++A+++   T+V GVY  +
Sbjct: 179 PLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTD 238

Query: 129 PRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 185
           PR  P AR +  L+Y E          V+    I    E  IP++V N  +P        
Sbjct: 239 PRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEP-------- 290

Query: 186 GERVGTLI 193
            E  GTLI
Sbjct: 291 -ESEGTLI 297

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 75.7 bits (185), Expect = 3e-17
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 95  PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV---TSKDL 151
               +D  AAL    ++A  V   T+V G+Y  +PR    A+ +D + + E     +   
Sbjct: 195 GRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGA 254

Query: 152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
            V+    +     ++IPV V +   P            GTL+
Sbjct: 255 KVLHPATLLPAVRSDIPVFVGSSKDP---------RAGGTLV 287

>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Glutamate 5-kinase
species: Campylobacter jejuni [TaxId: 197]

 Score = 57.8 bits (138), Expect = 6e-11
 Identities = 31/212 (14%), Positives = 70/212 (33%), Gaps = 21/212 (9%)

Query: 3   QVAIVVGG--GNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT 60
           +V +V                 + +++     IG    +     L A    +G    +  
Sbjct: 38  EVILVTSAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTG 97

Query: 61  AFRMSEVAEPYIRRRAVRHLEKGRVVIFA-----AGTGNPFFTTDTAAALRCAEINAEVV 115
               S  A  + +      +  G + I       A     F   D+ +A      +A+++
Sbjct: 98  KDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLL 157

Query: 116 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT------------AITLCQ 163
           +  +++DG YD NP    +A+ L+ +T+ +      ++   +            A     
Sbjct: 158 VILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL 217

Query: 164 ENNIPVVVFNLNQPGNIAKAIQGER--VGTLI 193
           E+N  + + +          +  ++   GTL 
Sbjct: 218 EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 249

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d2brxa1	225	Uridylate kinase PyrH {Pyrococcus furiosus [TaxId:	100.0
d2ij9a1	219	Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax	100.0
d2a1fa1	236	Uridylate kinase PyrH {Haemophilus influenzae [Tax	99.97
d1ybda1	236	Uridylate kinase PyrH {Neisseria meningitidis [Tax	99.97
d2cdqa1	304	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.97
d2j0wa1	292	Aspartokinase {Escherichia coli [TaxId: 562]}	99.96
d2akoa1	250	Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1	99.96
d2bufa1	300	N-acetyl-l-glutamate kinase {Pseudomonas aeruginos	99.96
d2hmfa1	302	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.96
d2ap9a1	291	N-acetyl-l-glutamate kinase {Mycobacterium tubercu	99.95
d2btya1	282	N-acetyl-l-glutamate kinase {Thermotoga maritima [	99.95
d1z9da1	238	Uridylate kinase PyrH {Streptococcus pyogenes [Tax	99.94
d1e19a_	313	Carbamate kinase {Archaeon Pyrococcus furiosus [Ta	99.91
d1b7ba_	307	Carbamate kinase {Enterococcus faecium [TaxId: 135	99.87
d1gs5a_	258	N-acetyl-l-glutamate kinase {Escherichia coli [Tax	99.81
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	88.28

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.8e-36  Score=244.22  Aligned_cols=180  Identities=27%  Similarity=0.443  Sum_probs=154.4

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      ++++||||||++++++. .+++++.++...+.....++++|+.+++..|++.|++....+          +  ....+++
T Consensus        36 ~~~viV~ggG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~--~~~~~~l  103 (225)
T d2brxa1          36 HEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVVVED----------F--WEAWKAV  103 (225)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSCBCS----------H--HHHHHHH
T ss_pred             CcEEEEECccHHHHHHHHhhhhcchhhHHHHHhhhhHHHHHHHHHHHHHHhhhccccccc----------H--HHHHHHH
Confidence            47899999999998875 556788888888999999999999999999998888764321          1  1234678


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC--------CcC
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLS  152 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~  152 (206)
                      +.+.+|+++++  .++.+||++|+++|..++||+|+++||||||||+||+++|++++|++++++|+.++        |++
T Consensus       104 ~~~~ipv~~~~--~~~~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~g  181 (225)
T d2brxa1         104 QLKKIPVMGGT--HPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSS  181 (225)
T ss_dssp             HTTCBCEECCC--STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------
T ss_pred             HhcccccccCC--CCCcchhHHHHHHHHHhCchhhhhhhhhhhhhhcccccccccccceEEecchHHHHhccCccccCCC
Confidence            89999999764  57889999999999999999999999999999999999999999999999987754        233


Q ss_pred             cc-hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          153 VM-DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       153 ~~-k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +| +..|++.|.++|++++|+||++|++|.++++|+.+||+|.|
T Consensus       182 g~~~k~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P  225 (225)
T d2brxa1         182 SVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  225 (225)
T ss_dssp             CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             CcccHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence            34 55588999999999999999999999999999999999976

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.4e-34  Score=231.73  Aligned_cols=177  Identities=36%  Similarity=0.457  Sum_probs=152.2

Q ss_pred             ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l   80 (206)
                      .+++||||||++++++. .+++.++++...++++.+++++|+.+++..|...+.+..           ..  ....++++
T Consensus        33 ~~~vIVvsgG~~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~--~~~~~~l~   99 (219)
T d2ij9a1          33 NQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVP-----------VD--FMEAEELS   99 (219)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCTTBCSSCC-----------SS--HHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhhcCccHHHHHHHHHHHHHhhHHHHHHHhhhccchhh-----------HH--HHHHHHHh
Confidence            47899999999999886 456689999999999999999999998887776665432           11  13456788


Q ss_pred             hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---------Cc
Q 028621           81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---------DL  151 (206)
Q Consensus        81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---------g~  151 (206)
                      +.+.+|+..+.  .++++||++|+++|..++||.|+++||||||||+||+.+|++++|++++++|+.++         |.
T Consensus       100 ~~~~v~v~~~~--~~~~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~~~~~A~~i~~is~~e~~~~~~~~~~~~~gg  177 (219)
T d2ij9a1         100 KLYRVVVMGGT--FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTN  177 (219)
T ss_dssp             TTCSEEEECCC--SSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCC
T ss_pred             ccCCceEECCC--CCCCcccHHHHHHHHHcCchHhhhccCcccccccccccCcccccccccCHHHHHHHhhccCccCCCC
Confidence            88999998753  67789999999999999999999999999999999999999999999999987653         23


Q ss_pred             CcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       152 ~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      +.+|++|++.|.++|++++|+||+ |++|.++++|+.+||+|.
T Consensus       178 ~~~k~~Aa~~a~~~gi~~~I~~g~-~~ni~~~l~Ge~vGT~Is  219 (219)
T d2ij9a1         178 VVIDLLAAKIIERSKIKTYVILGT-PENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             CCSCHHHHHHHHHHTCCEEEEECC-HHHHHHHHTTCCCSEEEC
T ss_pred             CcchHHHHHHHHHcCCcEEEecCC-CcHHHHHHCCCCCceEeC
Confidence            457999999999999999999996 789999999999999984

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=1.5e-30  Score=210.77  Aligned_cols=192  Identities=44%  Similarity=0.799  Sum_probs=143.8

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      +++++|.||+..+ ++......+.+....+.....+...+...+...+..........................+...++
T Consensus        45 ~~vivVssg~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (236)
T d2a1fa1          45 VEVSVVLGGGNLF-RGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLR  123 (236)
T ss_dssp             CEEEEEECCTTTC-CCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHH
T ss_pred             CeEEEEecccccc-hhhhhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhHHHhhhhhhhhhhh
Confidence            4666666665544 444445456666666666666666666666666655555555444332211111112345566778


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL  161 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~  161 (206)
                      .+.++++....+.++++||.+|+.+|.+++||.|+++||||||||+||+.+|+++++++++++|+.+.|.+++|++|++.
T Consensus       124 ~~~~~~~~~~~~~~~~dnD~laa~vA~~~~Ad~lii~TDVdGvyt~dP~~~~~A~~i~~i~~~e~l~~G~~v~k~~Aa~~  203 (236)
T d2a1fa1         124 EKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTL  203 (236)
T ss_dssp             TTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHH
T ss_pred             hcccccccccccCCCCCCcHHHHHHHHHhchhHHHHhhcccccccccccccccccccccccHHHHHhcCCceeHHHHHHH
Confidence            88998888777788999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      |.++|++++|+||++|++|.++++|+.+||+|+
T Consensus       204 a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI~  236 (236)
T d2a1fa1         204 ARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC  236 (236)
T ss_dssp             HHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred             HHHCCCeEEEEeCCCCcHHHHHHcCCCCcceeC
Confidence            999999999999999999999999999999995

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

Probab=99.97  E-value=4.6e-29  Score=201.34  Aligned_cols=192  Identities=56%  Similarity=0.925  Sum_probs=151.9

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE   81 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~   81 (206)
                      +++++|+|||..++... ....+.+..............+.......+...+......................+...++
T Consensus        44 ~~vviVssG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (236)
T d1ybda1          44 VQVGIVVGGGNIFRGVS-AQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLE  122 (236)
T ss_dssp             CEEEEEECCHHHHHHHH-HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHHHHHH
T ss_pred             CEEEEEecccccccccc-ccccccccchhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhHHHHHHHhhhc
Confidence            67999999988865443 23234444444444444555555555555666777776655443322222112345566778


Q ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621           82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL  161 (206)
Q Consensus        82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~  161 (206)
                      .+.+++.....+.++++||.+|+++|..++||.|+++||||||||+||+.+|++++++++++.|..+.|.++||+.|++.
T Consensus       123 ~~~~~~~~~~~~~~~gdnD~laa~vA~~~~ad~liilTdVdGvy~~dP~~~~~a~~~~~~~~~e~~~~g~~~m~~~Aa~~  202 (236)
T d1ybda1         123 EGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFAL  202 (236)
T ss_dssp             TTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHHH
T ss_pred             cCceeccccccccccccchHHHHHHHHHhCccceeeccCccchhhccccccccceeeccccHHHHHhcCchHHHHHHHHH
Confidence            88888887766788999999999999999999999999999999999999999999999999998888999999999999


Q ss_pred             HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621          162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  194 (206)
Q Consensus       162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~  194 (206)
                      |.++|++++|+||++|++|.++++|+.+||+|.
T Consensus       203 a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh  235 (236)
T d1ybda1         203 CRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH  235 (236)
T ss_dssp             HHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred             HHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence            999999999999999999999999999999995

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.7e-29  Score=212.70  Aligned_cols=164  Identities=22%  Similarity=0.259  Sum_probs=143.2

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch----------h----HHHHHHHHhhCCCEEEEeC
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP----------Y----IRRRAVRHLEKGRVVIFAA   90 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~----------~----~~~~l~~~l~~g~ipvi~g   90 (206)
                      .++...|.+..+||++|+.+++.+|++.|+++..+++++++.+++.          .    ....+..+++.+.+||++|
T Consensus       111 ~s~~~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~v~vv~G  190 (304)
T d2cdqa1         111 LTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTG  190 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEES
T ss_pred             cchhhHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccccccccchhhhHHHHhhhhhccCcEEEeec
Confidence            4455668899999999999999999999999999999997554321          1    1244556788999999999


Q ss_pred             CC------CC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHH
Q 028621           91 GT------GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMT  157 (206)
Q Consensus        91 ~~------g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~  157 (206)
                      |.      |.    .+++||++|+.+|.+|+|+++.+||||||||++||+.+|+++.|++++|+|+.++   |+.++|++
T Consensus       191 fig~~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~v~~a~~i~~lsy~EA~ela~~GakvlHp~  270 (304)
T d2cdqa1         191 FLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQ  270 (304)
T ss_dssp             SEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHH
T ss_pred             cccccCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccccCCceEcCccCHHHHHHHHhCCCcccCHH
Confidence            83      22    3689999999999999999999999999999999999999999999999999876   88999999


Q ss_pred             HHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          158 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       158 a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      +..++.+.+||++|.|.++|+         ..||+|..+.
T Consensus       271 ti~p~~~~~Ipi~i~nt~~p~---------~~GT~I~~~~  301 (304)
T d2cdqa1         271 SMRPAREGEIPVRVKNSYNPK---------APGTIITKTR  301 (304)
T ss_dssp             HHHHHHHHTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred             HHHHHHHCCCcEEEecCCCCC---------CCCCEEeCCC
Confidence            999999999999999999997         6899998654

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=8.2e-30  Score=213.50  Aligned_cols=164  Identities=18%  Similarity=0.250  Sum_probs=140.3

Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh---------H----HHHHHHHhhCCCEEEEeC
Q 028621           24 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY---------I----RRRAVRHLEKGRVVIFAA   90 (206)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~---------~----~~~l~~~l~~g~ipvi~g   90 (206)
                      ..++...|.+..+||++|+.+++.+|+++|+++..++++++..+++.+         .    ...+...++. .+||++|
T Consensus       103 ~~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~i~Vv~G  181 (292)
T d2j0wa1         103 ATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNE-GLVITQG  181 (292)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCTTSCCBCHHHHHHHHHHHTHHHHHH-SEEEEES
T ss_pred             ccChHHHHHHHhhhHHHhHHHHHHHHHhcCCCccccchhheeecCCccccccchhhhhhhhhhhhhhhhhcc-ccccccc
Confidence            345666788999999999999999999999999999999986654321         1    1223333444 4889999


Q ss_pred             CC-----CC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHH
Q 028621           91 GT-----GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTA  158 (206)
Q Consensus        91 ~~-----g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a  158 (206)
                      |.     |.    ++++||+.|+.+|.+|+|+++.+||||||||++||+.+|+|+.|+++||+|+.++   |+.++|+++
T Consensus       182 Fig~~~~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP~~v~~A~~i~~lsy~EA~ela~~GakVlhp~t  261 (292)
T d2j0wa1         182 FIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPAT  261 (292)
T ss_dssp             SEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTT
T ss_pred             ccccccCCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechhhcCCCceEcceeCHHHHHHHHhCCccccCHHH
Confidence            83     32    4689999999999999999999999999999999999999999999999999875   888999999


Q ss_pred             HHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          159 ITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       159 ~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      ..++.+++||++|.|.++|+         ..||+|..+.
T Consensus       262 i~p~~~~~Ipi~i~nt~~p~---------~~GT~I~~~~  291 (292)
T d2j0wa1         262 LLPAVRSDIPVFVGSSKDPR---------AGGTLVCNKT  291 (292)
T ss_dssp             HHHHHHHTCCEEEEESSCTT---------SCCEEEESCC
T ss_pred             HHHHHHcCCcEEEeeCCCCC---------CCCCeEecCC
Confidence            99999999999999999997         6899998754

>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Glutamate 5-kinase
species: Campylobacter jejuni [TaxId: 197]

Probab=99.96  E-value=2e-29  Score=206.43  Aligned_cols=188  Identities=14%  Similarity=0.177  Sum_probs=139.9

Q ss_pred             ceEEEEEcC-ChhhhhhhhhhcCCCChhhh---hHHHHHHHHHHHHHHHHHHHhCCCCceEecc-cccccccch--hHHH
Q 028621            2 FQVAIVVGG-GNIFRGASAAGNSGLDRSSA---DYIGMLATVMNAIFLQATMESIGIPTRVQTA-FRMSEVAEP--YIRR   74 (206)
Q Consensus         2 ~~~iiVhGG-G~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~-~~~~~v~~~--~~~~   74 (206)
                      ++++||||| +++  +|.   ++++.....   +.+...++.....++..+|.+.|+.+..... .+.......  ...+
T Consensus        37 ~~~vIV~gGa~~~--G~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~  111 (250)
T d2akoa1          37 YEVILVTSAAISA--GHT---KLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKN  111 (250)
T ss_dssp             SEEEEEECCHHHH--HHH---HCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHH
T ss_pred             CeEEEEEcCcccc--ccc---ccccccchhhhhhhhhcccchhHHHHHHHHhhhcccccccccccccchhhhhhhhhhhH
Confidence            467777665 477  653   245554433   3334456677777788889999998875322 221111111  1347


Q ss_pred             HHHHHhhCCCEEEEeCCC-C----CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--HHHh
Q 028621           75 RAVRHLEKGRVVIFAAGT-G----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVT  147 (206)
Q Consensus        75 ~l~~~l~~g~ipvi~g~~-g----~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~e~~  147 (206)
                      .+..+++.+.+|++++.. +    ..++++|++|+++|..++|++|+++||||||||+||+++|++++|+++++  ++..
T Consensus       112 ~~~~~l~~~~ipv~~~~~~~~~~~~~~~~~D~~A~~lA~~~~a~~li~~tdVdGVyd~dP~~~~~Ak~i~~It~~~~~~~  191 (250)
T d2akoa1         112 AIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWL  191 (250)
T ss_dssp             HHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC
T ss_pred             HHHHHHHhCcccccccCccccccccccccchhhHHHHHHhcccceeeeccCCCceeeCCCcccccccchhhccccchHHh
Confidence            788999999999998752 1    23689999999999999999999999999999999999999999999997  3333


Q ss_pred             cC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHh-cCCC-cceEEe
Q 028621          148 SK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAI-QGER-VGTLIG  194 (206)
Q Consensus       148 ~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l-~g~~-~GT~i~  194 (206)
                      ++        ++++|  |++||..|.++|++|+|+||++|++|.+++ .++. .||+|.
T Consensus       192 ~~~~~~~s~~~tGGM~~Kl~aa~~~~~~gi~v~I~nG~~~~~l~~~l~~~~~~~GTv~~  250 (250)
T d2akoa1         192 QATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE  250 (250)
T ss_dssp             ---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHSCCCCSSEEEC
T ss_pred             hhhcccCCCCCCCchHHHHHHHHHHHHCCCCEEEecCCCccHHHHHHhCCCCCCceEeC
Confidence            22        35666  899999999999999999999999999876 4544 699983

>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=5.3e-29  Score=209.23  Aligned_cols=188  Identities=16%  Similarity=0.179  Sum_probs=147.7

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHH-HHHHHHHHHHHHHHHHHhCCCCceEecccccccc--
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYI-GMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV--   67 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~-~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v--   67 (206)
                      +++|||||||++++..  .+++++++++           ++.+ ..++..+|..+++. |+++|+++.++++.+...+  
T Consensus        59 ~~vViVhGgg~~i~~~--l~~~gi~~~~~~g~RvT~~~~l~~~~~~~~g~vn~~lv~~-l~~~g~~a~~l~~~d~~~i~~  135 (300)
T d2bufa1          59 INPVVVHGGGPQIGDL--LKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNL-INRHGGSAIGLTGKDAELIRA  135 (300)
T ss_dssp             CEEEEEECCCHHHHHH--HHHTTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHHHHH-HHHTTCCEEEEEETGGGCEEE
T ss_pred             CcEEEecChHHHHHHH--HHhcccCceecCCcccccchhHHHHHHHHHhHHHHHHHHH-HHhcCCcccccCCCccceEEe
Confidence            5899999999998764  4556665433           2333 33466799999886 7789999999888764221  


Q ss_pred             -----------------------cchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEE
Q 028621           68 -----------------------AEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLK  117 (206)
Q Consensus        68 -----------------------~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~  117 (206)
                                             ++..  ..+.++.+++.|.|||+++.    .|.. ++++|.+|+.+|.+|+|++|+|
T Consensus       136 ~~~~~~~~~~~~~~~~~id~g~~G~v~~v~~~~i~~ll~~g~Ipvis~~~~~~~G~~~nin~D~~Aa~lA~~L~AdkLI~  215 (300)
T d2bufa1         136 KKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLML  215 (300)
T ss_dssp             EECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHTTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEE
T ss_pred             ecccccccCcccccccccccCcccceeecchhHHHHHhcCCCeEEecccccCcccchhcccHHHHHHHHHHHcCCCeEEE
Confidence                                   1110  14778899999999999884    3443 5999999999999999999999


Q ss_pred             eeccCccccCCCCCCCCCcccccccHHHHhcC---C--cCcc--hHHHHHHHHhCCCc-EEEEcCCCCchHH-HHhcCCC
Q 028621          118 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGER  188 (206)
Q Consensus       118 ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g--~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l~-~~l~g~~  188 (206)
                      +|||||||+.++      +++++++.+++.++   +  .++|  |+++|..|.+.|++ |+|+||+.|+.|+ ++|++++
T Consensus       216 Ltdv~Gv~~~~g------~~~~~l~~~~~~~li~~~~i~gGM~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g  289 (300)
T d2bufa1         216 LTNIAGLMDKQG------QVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSG  289 (300)
T ss_dssp             EESSSCCBCTTS------CBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTC
T ss_pred             EcCCCccccCCC------cchhhccHHHHHHHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHcCCCC
Confidence            999999997643      67888888777653   2  2334  99999999999996 9999999999876 8999999


Q ss_pred             cceEEecCCC
Q 028621          189 VGTLIGGTWN  198 (206)
Q Consensus       189 ~GT~i~~~~~  198 (206)
                      +||+|+.+.+
T Consensus       290 ~GT~I~~~~~  299 (300)
T d2bufa1         290 VGTLISNRKR  299 (300)
T ss_dssp             CSEEEECCCC
T ss_pred             ceeEEecCCC
Confidence            9999998764

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=6.1e-29  Score=209.05  Aligned_cols=164  Identities=25%  Similarity=0.339  Sum_probs=145.3

Q ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch----------hHHHHHHHHhhCCCEEEEeCCCC-
Q 028621           25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP----------YIRRRAVRHLEKGRVVIFAAGTG-   93 (206)
Q Consensus        25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~----------~~~~~l~~~l~~g~ipvi~g~~g-   93 (206)
                      .++...|.+..+||++|+.+++.+|++.|+++..+++.+++.+++.          ...+.+..+++.+.+||++||.| 
T Consensus       116 ~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~v~Vv~GFig~  195 (302)
T d2hmfa1         116 LTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGT  195 (302)
T ss_dssp             CCHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEE
T ss_pred             CCHHHHHHHhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccCCccchhhhhhhhhHHHHHHHHhcCCeEEeeccccc
Confidence            4555668888999999999999999999999999999987655322          13567888899999999999843 


Q ss_pred             ----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHH
Q 028621           94 ----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLC  162 (206)
Q Consensus        94 ----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a  162 (206)
                          .    .+++||+.|+.+|..|+|+.+++||||||||++||+.+|+++.+++++|+|+.++   |..++|++|..++
T Consensus       196 ~~~G~~ttLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~~~dP~~~~~a~~~~~~~y~ea~eLa~~g~~v~h~~~~~~~  275 (302)
T d2hmfa1         196 TEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPA  275 (302)
T ss_dssp             CTTCCEEECCTTTHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHH
T ss_pred             CCCCCEEEEeccCcccHHHHHHHHhccHHHHHHhccchhccchhhcCCCceEecccCHHHHHHHHhCCCcccCHHHHHHH
Confidence                2    4689999999999999999999999999999999999999999999999999875   8889999999999


Q ss_pred             HhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621          163 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  197 (206)
Q Consensus       163 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  197 (206)
                      .++++|++|.|.++|+         .+||+|..+.
T Consensus       276 ~~~~i~i~v~~~~~~~---------~~gT~i~~~~  301 (302)
T d2hmfa1         276 MEKGIPILVKNTFEPE---------SEGTLITNDM  301 (302)
T ss_dssp             HHTTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred             HHcCCCEEEeeCCCCC---------CCCCEEcCCC
Confidence            9999999999999886         6899998764

>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=3.2e-27  Score=197.29  Aligned_cols=188  Identities=18%  Similarity=0.191  Sum_probs=142.1

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEecccccccc--
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV--   67 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v--   67 (206)
                      +++|||||||++++.  .++++++++.+           ++.+.. ..+..+..+++ ++..+|+.+.++.+.+....  
T Consensus        58 ~~vVlVhGg~~~i~~--~l~~~~~~~~~~~~~r~t~~~~~~~v~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~a  134 (291)
T d2ap9a1          58 IHPVVVHGGGPQITA--MLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVN-LINAHGPYAVGITGEDAQLFTA  134 (291)
T ss_dssp             CEEEEEECCSHHHHH--HHHHHTCCCCCSSSSCCBCHHHHHHHHHHHHHTHHHHHHH-HHTTSSSCEEEEETTGGGCEEE
T ss_pred             CEEEEEeCCccccch--hHHHcCCCcccccccccCcHHHHHHHHHhhhhHHHHHHHH-HHHhcCCccccchhhhcccccc
Confidence            589999999999666  44556655433           233333 34455665655 57789999988776543211  


Q ss_pred             -----------------cchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 028621           68 -----------------AEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDG  123 (206)
Q Consensus        68 -----------------~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~G  123 (206)
                                       +...  ..+.+..+|+.|.+||++|.    .|. .++++|.+|+.+|.+++|++|+|+|||||
T Consensus       135 ~~~~~~~~~~~~~~~~~G~v~~v~~~~I~~ll~~g~ipvi~~~~~~~~g~~~n~d~D~lAa~lA~~l~AdkLI~LTdv~G  214 (291)
T d2ap9a1         135 VRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDG  214 (291)
T ss_dssp             EECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             cccccccccccccceeecccccchHHHHHHHHhcCCCcccCccccCCccccccccHHHHHHHHHHhcCCcEEEEeeccCc
Confidence                             1110  14778999999999999995    333 36999999999999999999999999999


Q ss_pred             cccCCCCCCCCCcccccccHHHHhcC---CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchHH-HHhcCCCcceEEec
Q 028621          124 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGG  195 (206)
Q Consensus       124 v~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l~-~~l~g~~~GT~i~~  195 (206)
                      ||+++|+..   .++++++..++.++   ..++|  |+++|..|++.|++ |+|+||+.|+.|. ++|+++++||+|..
T Consensus       215 v~~~~~~~~---~~~~~~~~~~~~~~~~~~~gGM~~Kl~aA~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~r  290 (291)
T d2ap9a1         215 LYTRWPDRD---SLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR  290 (291)
T ss_dssp             EETTTTCTT---CEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred             ccccccccc---cccccCCHHHHHHHHhhhhCchHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCceEEec
Confidence            999887543   46677777666543   34444  99999999999997 9999999999987 79999999999974

>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=3.2e-27  Score=196.60  Aligned_cols=186  Identities=20%  Similarity=0.210  Sum_probs=144.2

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEecccccccc--
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV--   67 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v--   67 (206)
                      .++|||||||++++.  .++++++++.+           .+.+.+ ...+.|..++. .|+++|+++.++++.+....  
T Consensus        54 ~~iVlVhGg~~~~~~--~l~~~~i~~~~~~~~~~t~~~~~~~~~~~~~~~~n~~~~~-~l~~~g~~a~~l~~~~~~~~~~  130 (282)
T d2btya1          54 IKPIIVHGGGPAISQ--MMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVM-NLNLHGGRAVGICGKDSKLIVA  130 (282)
T ss_dssp             CEEEEEECCSHHHHH--HHHHHTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHHHH-HHHTTTCCEEEEETTGGGSEEE
T ss_pred             CeEEEEECCCccchh--hHHHcCCcceeccCccccchhhHHHHHHHHhchhhHHHHH-HHHhcCCCeeeeeccccceeEe
Confidence            589999999999654  45666766543           222222 34467777766 48889999999887653211  


Q ss_pred             ------------cchh-H-HHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 028621           68 ------------AEPY-I-RRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN  128 (206)
Q Consensus        68 ------------~~~~-~-~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~d  128 (206)
                                  +++. + .+.++.+|++|.|||+++.    .|. .++++|.+|+.+|..++|++|+|+|||||+|++ 
T Consensus       131 ~~~~~~~d~~~~g~~~~v~~~~i~~lL~~~~ipvi~~~~~~~~g~~~nl~~d~~aa~iA~~l~AdkLI~ltdv~Gl~~d-  209 (282)
T d2btya1         131 EKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD-  209 (282)
T ss_dssp             EECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-
T ss_pred             ccccccccccccccccccChHHHHHHHhCCCceeecCcccCCcceeeeccccchhHHHhhhcCCceeEEeccccceecC-
Confidence                        1111 1 3788999999999999985    333 358999999999999999999999999999963 


Q ss_pred             CCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchHH-HHhcCCCcceEEecCC
Q 028621          129 PRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGGTW  197 (206)
Q Consensus       129 P~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l~-~~l~g~~~GT~i~~~~  197 (206)
                            .+++++++..|+..+     ..++|  |+++|..|.++|++ |+|+||+.|++|. ++|+++++||+|++.+
T Consensus       210 ------~~~i~~~~~~~~~~~~~~~~~tgGM~~Kl~aA~~A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I~~~e  281 (282)
T d2btya1         210 ------GKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKELE  281 (282)
T ss_dssp             ------TEECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCCC
T ss_pred             ------ccccccCCHHHHHHHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEEEeCC
Confidence                  478889988876642     13344  99999999999997 9999999999876 7999999999999764

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.94  E-value=8e-26  Score=181.51  Aligned_cols=192  Identities=44%  Similarity=0.706  Sum_probs=149.2

Q ss_pred             ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh-HHHHHHHHh
Q 028621            2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY-IRRRAVRHL   80 (206)
Q Consensus         2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~-~~~~l~~~l   80 (206)
                      +++++|+|||..++...... .+............+...+..+.+..+...++................. ....+....
T Consensus        44 ~~Vv~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~  122 (238)
T d1z9da1          44 VQIALVIGGGNLWRGEPAAD-AGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLE  122 (238)
T ss_dssp             CEEEEEECCTTTCCHHHHHH-HTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHH
T ss_pred             CEEEEEecccccccceeccc-cCCcchhHHHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhhHHHHhhhhHHHHHhhhc
Confidence            67899999998876554222 3455555566666777777777787888889988776555433322221 122333333


Q ss_pred             hCCCEEEEeCC-CCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHH
Q 028621           81 EKGRVVIFAAG-TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAI  159 (206)
Q Consensus        81 ~~g~ipvi~g~-~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~  159 (206)
                       ....+..... ....+.++|.+|+.+|..++|+.++++|||||+|++||+..+++++++.+++.|....|.++||++|+
T Consensus       123 -~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~a~~li~~tdVdGvy~~~P~~~~~a~~~~~~~~~~~~~~g~~~~k~~Aa  201 (238)
T d1z9da1         123 -KNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATAS  201 (238)
T ss_dssp             -TTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHH
T ss_pred             -cccccceecceeccCCCCchHHHHHHHHHhhhhhhcccccccceecccccccccchhhccccccchhccCcchhHHHHH
Confidence             3334444433 23456788999999999999999999999999999999999999999999999888788899999999


Q ss_pred             HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +.|.++|++++|+||++|++|.++++|+.+||+|+.
T Consensus       202 ~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~  237 (238)
T d1z9da1         202 TLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN  237 (238)
T ss_dssp             HHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             HHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEecc
Confidence            999999999999999999999999999999999985

>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=3.8e-24  Score=180.09  Aligned_cols=117  Identities=20%  Similarity=0.252  Sum_probs=97.4

Q ss_pred             HHHHHHHhhCCCEEEEeCC------------CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621           73 RRRAVRHLEKGRVVIFAAG------------TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD  139 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~------------~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~  139 (206)
                      .+.+..+++++.+|++.+.            +|+ .++++|++|+.+|.+++||+|+|+|||||||+++|  ++++++|+
T Consensus       175 ~~~i~~~~~~~~i~vl~~~~~~~v~~~~~~~~G~~~ninaD~lAa~vA~~l~Ad~LIlLTdv~Gv~~~~~--~~~~~~i~  252 (313)
T d1e19a_         175 AETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLR  252 (313)
T ss_dssp             HHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECC
T ss_pred             ccceeeccccchhhhhccCCCCCccccCCCcCceEEecchhHHHHHHHHHHHHHHHHhccCCcceeccCC--Ccccceee
Confidence            3678889999999998763            233 36899999999999999999999999999998766  35679999


Q ss_pred             cccHHHHhcC------CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          140 TLTYQEVTSK------DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                      +++.+|+.++      +.++|  |++||..|.++|++ |+|.+   ++.+.++|+|+ .||+|.|
T Consensus       253 ~l~~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~---~~~i~~~l~g~-~GT~i~P  313 (313)
T d1e19a_         253 EVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAH---LEKAVEALEGK-TGTQVLP  313 (313)
T ss_dssp             EEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEE---GGGHHHHHTTS-SSEEEEC
T ss_pred             eCCHHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECC---hHHHHHHHCCC-CCCEEcC
Confidence            9999887753      34445  99999999998884 88865   67799999996 7999986

>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Enterococcus faecium [TaxId: 1352]

Probab=99.87  E-value=3.8e-22  Score=166.92  Aligned_cols=117  Identities=19%  Similarity=0.224  Sum_probs=96.2

Q ss_pred             HHHHHHHhhCCCEEEEeCC----------CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccc
Q 028621           73 RRRAVRHLEKGRVVIFAAG----------TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL  141 (206)
Q Consensus        73 ~~~l~~~l~~g~ipvi~g~----------~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i  141 (206)
                      .+.+...++++.+|++.+.          .|+ .++++|++|+.+|.+++||+|+|+|||||||+++|+  |+.++++++
T Consensus       171 ~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~ninaD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~--~~~~~i~~l  248 (307)
T d1b7ba_         171 AETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK--PDEKQLTNV  248 (307)
T ss_dssp             HHHHHHHHHTTEEEECSGGGCEEEETTTTEECSCCCCHHHHHHHHHHHHTCSEEEEECSSSSCEETTTS--TTCEECSEE
T ss_pred             hhhhhhhhhcCceeeccCCccccccccCCCCcEEecchhHHHHHHHHHhhhhheeeccccCceeeCCCc--ccccccccC
Confidence            3667788889999986552          233 369999999999999999999999999999998873  566889999


Q ss_pred             cHHHHhcC------CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchHHHHhcCCCcceEE
Q 028621          142 TYQEVTSK------DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLI  193 (206)
Q Consensus       142 ~~~e~~~~------g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l~~~l~g~~~GT~i  193 (206)
                      +.+|+.++      +.++|  |++||..|.++|+. ++|+++  ++.|.++|+++++||+|
T Consensus       249 ~~~e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~~--~~~l~~l~~~~~~GT~I  307 (307)
T d1b7ba_         249 TVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS--LENLGSMSGDEIVGTVV  307 (307)
T ss_dssp             EHHHHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEEC--HHHHTTCSSCSCEEECC
T ss_pred             CHHHHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEECC--HHHHHHHHcCCCCCCCC
Confidence            99887653      34445  99999999999995 777764  56788999999999986

>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.8e-19  Score=145.22  Aligned_cols=183  Identities=19%  Similarity=0.137  Sum_probs=130.5

Q ss_pred             eEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEeccccccccc--
Q 028621            3 QVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--   68 (206)
Q Consensus         3 ~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~--   68 (206)
                      .+|||||||++  .+..+++++++++.           ...+.. ....++..++. .+...|.++......+.....  
T Consensus        37 ~vvvvhG~g~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  113 (258)
T d1gs5a_          37 PLVIVHGGGCV--VDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVT  113 (258)
T ss_dssp             CEEEEECCHHH--HHHHHHHHTCCCCEETTEECBCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEE
T ss_pred             eEEEECCCchh--hhcchhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH-HHhccCccccccccccccccccc
Confidence            48999999999  55566777776542           112222 23356666655 467799998877665431110  


Q ss_pred             ----------chh--HHHHHHHHhhCCCEEEEeCC----CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCC
Q 028621           69 ----------EPY--IRRRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRR  131 (206)
Q Consensus        69 ----------~~~--~~~~l~~~l~~g~ipvi~g~----~g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~  131 (206)
                                ...  ....+...++.+.+|++.+.    .+ ....++|.+|+.+|..++|+. ++++++++++..++. 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~a~~~a~~l~a~~-~~~~~~~~~~~~~~~-  191 (258)
T d1gs5a_         114 QLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADL-ILLSDVSGILDGKGQ-  191 (258)
T ss_dssp             ECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCEE-EEEESSSSCBCTTSC-
T ss_pred             cccccccccccccccccchHHHHHhccccccccccccccCCcEEEechhhhhhhHHHHHHhhh-hhhcccccccccccc-
Confidence                      000  13567788999999999874    22 235899999999999999986 567889999987653 


Q ss_pred             CCCCcccccccHHHHhc-----CCcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchHHHHhcCCCcceEEec
Q 028621          132 NPNARLLDTLTYQEVTS-----KDLSVM--DMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLIGG  195 (206)
Q Consensus       132 ~~~a~~i~~i~~~e~~~-----~g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l~~~l~g~~~GT~i~~  195 (206)
                           .++.+...+...     ..+++|  |++||..|.++|++ |+|+||++|+.|.++|+|++.||+|.+
T Consensus       192 -----~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~a  258 (258)
T d1gs5a_         192 -----RIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRILA  258 (258)
T ss_dssp             -----BCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEECC
T ss_pred             -----cccccchHHHHHHHhCCcccchHHHHHHHHHHHHHcCCCEEEEEeCCCchHHHHHhcCCCCceEEeC
Confidence                 333444433332     234555  99999999999996 999999999999999999999999863

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.28  E-value=1.4  Score=30.93  Aligned_cols=68  Identities=21%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhCCCCceEeccccccccc-ch-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcE
Q 028621           40 MNAIFLQATMESIGIPTRVQTAFRMSEVA-EP-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEV  114 (206)
Q Consensus        40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~-~~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~  114 (206)
                      -|+.++..+|++.|.++....     .+. ++ .+.+.+++.+++..+.|++|.  .+...-|.+...++..++++.
T Consensus        27 sN~~~l~~~l~~~G~~v~~~~-----~v~Dd~~~i~~~l~~~~~~~DliittGG--~s~g~~D~~~~~l~~~~~~~~   96 (155)
T d2ftsa3          27 SNRSTLLATIQEHGYPTINLG-----IVGDNPDDLLNALNEGISRADVIITSGG--VSMGEKDYLKQVLDIDLHAQI   96 (155)
T ss_dssp             CHHHHHHHHHHTTTCCEEEEE-----EECSSHHHHHHHHHHHHHHCSEEEEESC--CSSSCCHHHHHHHHTTTCCEE
T ss_pred             chHHHHHHHhcccccceEEEE-----EecCchhHHHHHHHHhhcccCEEEEecc--ccCCcchhhHHHHHhhcceee
Confidence            366777888999998876432     222 22 256777888887888888874  455678999999988888753