Citrus Sinensis ID: 028623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY
Secondary Structure (PSIPRED)
ccccccccccEEEEEccccccHHHHHHHHcHHccccEEEEEEcccEEEEccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccEEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccEEEcHHHHHHHEcccccEEEEEHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvsgsgicakRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKrmntkpshgpihfrapAKILWRTIRGMIPHKTKRGAAALARLKAyegvpapydktkrmvipDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEerlgpqleiiapiky
Flexible Loop (DISEMBL)
mvsgsgicakRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEeicisgglvrqkMKYMRFLRKRmntkpshgpihfrAPAKILWRTIRGMIPHKTKRGAAALARLKAYegvpapydktkrmVIPDALKVLRLQKGHKYCllgrlssevgwnYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEkaaeerlgpqleiiapiky
Low Complexity Region (SEG)
MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTkrgaaalarlkaYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY
Disordered region (IsUnstruct)
*****GICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKEL*********************************************
Disordered Region (DISOPRED)
*****GICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYE**********************QLEIIAPIKY
Disordered Region (DISEMBL)
MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY
Disordered Region (DISPRO)
******ICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q9FKC0	206	60S ribosomal protein L13	yes	no	1.0	1.0	0.883	1e-106
Q9SFU1	206	60S ribosomal protein L13	no	no	1.0	1.0	0.859	1e-104
Q9SVR0	206	60S ribosomal protein L13	no	no	1.0	1.0	0.868	1e-104
Q9LRX8	206	60S ribosomal protein L13	no	no	1.0	1.0	0.859	1e-103
O49885	205	60S ribosomal protein L13	N/A	no	0.995	1.0	0.839	2e-99
O65055	206	60S ribosomal protein L13	N/A	no	1.0	1.0	0.820	6e-98
P93099	200	60S ribosomal protein L13	N/A	no	0.844	0.87	0.672	3e-64
Q3SZ90	203	60S ribosomal protein L13	yes	no	0.922	0.935	0.589	7e-63
P40429	203	60S ribosomal protein L13	yes	no	0.922	0.935	0.584	2e-62
Q5RA38	203	60S ribosomal protein L13	yes	no	0.922	0.935	0.584	2e-62

>sp|Q9FKC0|R13A4_ARATH 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1

 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/206 (88%), Positives = 194/206 (94%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGIC+KRVVVDARHHMLGRLAS+ AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK YEGVP PYDK 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERA V YER+KQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLN 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLRVKAEK AEE+LG QL+I+AP+KY
Sbjct: 181 KLRVKAEKVAEEKLGAQLDILAPVKY 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFU1|R13A1_ARATH 60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/206 (85%), Positives = 193/206 (93%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVVDARHHMLGRLASV+AK+LLNGQ +VVVRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGA ALARLK +EGVP PYDK 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMV+PDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERAQ  YER+KQL+
Sbjct: 121 KRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLS 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLR KAEK AEE+LG QL+++AP+KY
Sbjct: 181 KLRAKAEKVAEEKLGSQLDVLAPVKY 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVR0|R13A3_ARATH 60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/206 (86%), Positives = 192/206 (93%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVVD RHHMLGRLAS  AKELLNGQ+VVVVRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK +EG+P PYDK 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+QV YER+KQL 
Sbjct: 121 KRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLN 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLR KAEK AEERLG QL+++AP+KY
Sbjct: 181 KLRTKAEKVAEERLGSQLDVLAPVKY 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRX8|R13A2_ARATH 60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1

 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/206 (85%), Positives = 191/206 (92%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGIC+KRVVVDARHHM GRLAS++AKELLNGQ VVVVRCEEIC+SGGLVRQKMKYM
Sbjct: 1   MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK +EGVP PYDK 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+Q  YER+KQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLT 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLR KAEK AEE+LG QL+++A IKY
Sbjct: 181 KLRAKAEKVAEEKLGSQLDVLASIKY 206

Arabidopsis thaliana (taxid: 3702)

>sp|O49885|RL13A_LUPLU 60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1

 Score =  361 bits (927), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 173/206 (83%), Positives = 192/206 (93%), Gaps = 1/206 (0%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGI AKRVVVDARHHMLGRLAS++AKELLNGQKVV+VR EEICISGGLVRQKMKY+
Sbjct: 1   MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYL 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIH  AP+KI WRT+RGMIPHKTKRG  ALARLK YEG+P P+DK 
Sbjct: 61  RFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQ 119

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KR+V+PDALKVLRLQKGHKYCLLG+LSSEVGWNYYDTIKELEKKRKER+QV YER+KQL 
Sbjct: 120 KRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLN 179

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLRVKAE+ A+E+LG QL+I+AP+KY
Sbjct: 180 KLRVKAEQVAQEKLGSQLDILAPVKY 205

Lupinus luteus (taxid: 3873)

>sp|O65055|RL13A_PICMA 60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1

 Score =  356 bits (914), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 169/206 (82%), Positives = 193/206 (93%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAK VVVDARHHMLGRLAS+LAKELL+GQ+VVVVRCEEIC+SGGLVRQKMKY+
Sbjct: 1   MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYL 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAP++ILWRTIRGMIPHKTKRGAAALA L+A+EGVP PYD+ 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRK 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLGRLS EVGW+++DTI ELE+KRK +AQV+YERRKQLA
Sbjct: 121 KRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLA 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLR KA + AE++L P++E++A +KY
Sbjct: 181 KLRSKAVELAEKQLAPEMELLASLKY 206

Picea mariana (taxid: 3335)

>sp|P93099|RL13A_CYAPA 60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1

 Score =  244 bits (623), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/174 (67%), Positives = 138/174 (79%)

Query: 10  KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
           K VVVD R H+LGRLA+ LAKELLNGQ+VV VR EEI ISG L R K+K+  FL+KRMNT
Sbjct: 4   KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63

Query: 70  KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
            P  GP HFR+PA+ILWRTIRGMIPHKT RGAAAL RLKA+EGVP PYDK KRMVIP AL
Sbjct: 64  NPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQAL 123

Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLR 183
           +VLRL+ G K+C+LGRL++EVGW + D +  LE+KRK ++   Y R+K L  LR
Sbjct: 124 RVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLR 177

Cyanophora paradoxa (taxid: 2762)

>sp|Q3SZ90|RL13A_BOVIN 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3

 Score =  239 bits (611), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 148/190 (77%)

Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT P
Sbjct: 7   LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66

Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
           S GP HFRAP++I WRT+RGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67  SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKV 126

Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
           +RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIE 186

Query: 192 ERLGPQLEII 201
           +++G   E++
Sbjct: 187 KKIGKFTEVL 196

Bos taurus (taxid: 9913)

>sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2

 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/190 (58%), Positives = 147/190 (77%)

Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT P
Sbjct: 7   LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66

Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
           S GP HFRAP++I WRT+RGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67  SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126

Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
           +RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186

Query: 192 ERLGPQLEII 201
           +++    E++
Sbjct: 187 KKIDKYTEVL 196

Homo sapiens (taxid: 9606)

>sp|Q5RA38|RL13A_PONAB 60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3

 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/190 (58%), Positives = 147/190 (77%)

Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT P
Sbjct: 7   LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSP 66

Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
           S GP HFRAP++I WRT+RGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67  SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126

Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
           +RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVE 186

Query: 192 ERLGPQLEII 201
           +++    E++
Sbjct: 187 KKIDKYTEVL 196

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
449476086	241	PREDICTED: 60S ribosomal protein L13a-4-	1.0	0.854	0.922	1e-108
449476090	208	PREDICTED: 60S ribosomal protein L13a-4-	1.0	0.990	0.922	1e-107
449442379	206	PREDICTED: 60S ribosomal protein L13a-4-	1.0	1.0	0.922	1e-107
449432416	206	PREDICTED: 60S ribosomal protein L13a-2-	1.0	1.0	0.912	1e-107
255554134	206	60S ribosomal protein L13a, putative [Ri	1.0	1.0	0.917	1e-106
118483379	206	unknown [Populus trichocarpa]	1.0	1.0	0.907	1e-106
313586505	206	60S ribosomal protein L13aA [Hevea brasi	1.0	1.0	0.912	1e-106
76573371	206	60S ribosomal protein L13a-like protein	1.0	1.0	0.902	1e-105
115455427	206	Os03g0756000 [Oryza sativa Japonica Grou	1.0	1.0	0.893	1e-105
356527386	206	PREDICTED: 60S ribosomal protein L13a-4-	1.0	1.0	0.888	1e-105

>gi|449476086|ref|XP_004154636.1| PREDICTED: 60S ribosomal protein L13a-4-like isoform 1 [Cucumis sativus]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/206 (92%), Positives = 200/206 (97%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVVDARHHMLGRL+S++AKELLNGQKVVVVRCEEICISGGLVRQKMKYM
Sbjct: 34  MVSGSGICAKRVVVDARHHMLGRLSSIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 93

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVP PYDK 
Sbjct: 94  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 153

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE+KRKER+Q AYER+KQL 
Sbjct: 154 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERSQAAYERKKQLN 213

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLR+KAEK AEE+LGPQLE+IAPIKY
Sbjct: 214 KLRIKAEKVAEEKLGPQLEVIAPIKY 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476090|ref|XP_004154637.1| PREDICTED: 60S ribosomal protein L13a-4-like isoform 2 [Cucumis sativus] gi|449476094|ref|XP_004154638.1| PREDICTED: 60S ribosomal protein L13a-4-like isoform 3 [Cucumis sativus]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/206 (92%), Positives = 200/206 (97%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVVDARHHMLGRL+S++AKELLNGQKVVVVRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLSSIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVP PYDK 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE+KRKER+Q AYER+KQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERSQAAYERKKQLN 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLR+KAEK AEE+LGPQLE+IAPIKY
Sbjct: 181 KLRIKAEKVAEEKLGPQLEVIAPIKY 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442379|ref|XP_004138959.1| PREDICTED: 60S ribosomal protein L13a-4-like [Cucumis sativus] gi|449442541|ref|XP_004139040.1| PREDICTED: 60S ribosomal protein L13a-4-like [Cucumis sativus]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/206 (92%), Positives = 200/206 (97%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVVDARHHMLGRL+S++AKELLNGQKVVVVRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLSSIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVP PYDK 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE+KRKER+Q AYER+KQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERSQAAYERKKQLN 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLR+KAEK AEE+LGPQLE+IAPIKY
Sbjct: 181 KLRIKAEKVAEEKLGPQLEVIAPIKY 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432416|ref|XP_004133995.1| PREDICTED: 60S ribosomal protein L13a-2-like [Cucumis sativus] gi|449525004|ref|XP_004169511.1| PREDICTED: 60S ribosomal protein L13a-2-like [Cucumis sativus]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/206 (91%), Positives = 200/206 (97%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVVDARHHMLGRL+S++AKELLNGQKVVVVRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLSSIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVP PYDK 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE+KRKER+Q AYE++KQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELERKRKERSQAAYEKKKQLT 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLRVKAEK A+E+LGPQL++IAPIKY
Sbjct: 181 KLRVKAEKVADEKLGPQLQVIAPIKY 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554134|ref|XP_002518107.1| 60S ribosomal protein L13a, putative [Ricinus communis] gi|223542703|gb|EEF44240.1| 60S ribosomal protein L13a, putative [Ricinus communis]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/206 (91%), Positives = 199/206 (96%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVVDARHHMLGRLAS++AKELLNGQKVVVVRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLASIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAP+KILWRTIRGMIPHKTKRG AALARLK YEGVP PYDK 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGEAALARLKVYEGVPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+Y+TIKELE+KRKERAQVAYER+KQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYETIKELERKRKERAQVAYERKKQLT 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLRVKAEK AEE+LGPQL++IAPIKY
Sbjct: 181 KLRVKAEKIAEEKLGPQLDVIAPIKY 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483379|gb|ABK93590.1| unknown [Populus trichocarpa]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/206 (90%), Positives = 199/206 (96%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKR+VVDARHHMLGRLAS+LAKELLNGQKVVVVRCEEICISGGLVRQKMKY+
Sbjct: 1   MVSGSGICAKRIVVDARHHMLGRLASILAKELLNGQKVVVVRCEEICISGGLVRQKMKYL 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAP+KILWRTIRGMIPHKTKRG AALARLK +EGVP PYDKT
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGEAALARLKVFEGVPPPYDKT 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLG+LSSEVGWN+YDTIKELE KRKERAQ+ YER+KQLA
Sbjct: 121 KRMVIPDALKVLRLQPGHKYCLLGQLSSEVGWNHYDTIKELEMKRKERAQLIYERKKQLA 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLRVKAEK AEE+LGPQL+IIAP+KY
Sbjct: 181 KLRVKAEKTAEEKLGPQLDIIAPLKY 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586505|gb|ADR71263.1| 60S ribosomal protein L13aA [Hevea brasiliensis]

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/206 (91%), Positives = 198/206 (96%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVVDARHHMLGRLAS++AKELLNGQKVVVVRCEEICISGGLVRQKMKYM
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLASIIAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRG AALARLK YEG+P PYDK 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGEAALARLKVYEGIPPPYDKM 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+Y+TIKELE+KRKERAQVAYER+KQL 
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYETIKELERKRKERAQVAYERKKQLT 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLRVKAEK AEE+LG QL+II+PIKY
Sbjct: 181 KLRVKAEKVAEEKLGSQLDIISPIKY 206

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76573371|gb|ABA46790.1| 60S ribosomal protein L13a-like protein [Solanum tuberosum]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/206 (90%), Positives = 198/206 (96%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGI A+R+VVDARHHMLGRL+S+LAKELLNGQ+VVVVRCEEIC+SGGLVRQKMKY+
Sbjct: 1   MVSGSGISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYL 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAP+KILWRTIRGMIPHKTKRGAAALARLK YEGVP PYDK 
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYEGVPPPYDKI 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLG+LSSEVGWN+YDTIKELE KRKERAQVAYERRKQLA
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELENKRKERAQVAYERRKQLA 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLRVKAEKAAEE+LGPQL +I PIKY
Sbjct: 181 KLRVKAEKAAEEKLGPQLAVIEPIKY 206

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115455427|ref|NP_001051314.1| Os03g0756000 [Oryza sativa Japonica Group] gi|37718812|gb|AAR01683.1| putative ribosomal protein L13a [Oryza sativa Japonica Group] gi|108711156|gb|ABF98951.1| 60S ribosomal protein L13a-2, putative, expressed [Oryza sativa Japonica Group] gi|113549785|dbj|BAF13228.1| Os03g0756000 [Oryza sativa Japonica Group] gi|125545767|gb|EAY91906.1| hypothetical protein OsI_13588 [Oryza sativa Indica Group] gi|125587965|gb|EAZ28629.1| hypothetical protein OsJ_12636 [Oryza sativa Japonica Group] gi|215737379|dbj|BAG96308.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741056|dbj|BAG97551.1| unnamed protein product [Oryza sativa Japonica Group] gi|215769213|dbj|BAH01442.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/206 (89%), Positives = 201/206 (97%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSG+CA RVVVDARHHMLGRLAS++AKELLNGQ+VVVVRCEEIC+SGGLVRQKMKY+
Sbjct: 1   MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFR+PAKILWRT+RGMIPHKTKRG AALARLKAYEGVP PYD+T
Sbjct: 61  RFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRT 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GHKYCLLG+LS EVGWNYYDTI+ELE+KRKE+A+VAY+RRKQLA
Sbjct: 121 KRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKAKVAYDRRKQLA 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLRVKAEKAAEE+LGPQLEI+APIKY
Sbjct: 181 KLRVKAEKAAEEKLGPQLEILAPIKY 206

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527386|ref|XP_003532292.1| PREDICTED: 60S ribosomal protein L13a-4-like [Glycine max]

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/206 (88%), Positives = 197/206 (95%)

Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSGICAKRVVVDARHHMLGRLAS++AKELLNGQKVVVVRCEEICISGGLVRQKMKY+
Sbjct: 1   MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYL 60

Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAP KI WRT+RGMIPHKTKRG AALARLK YEG+P PYDKT
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPGKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKT 120

Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMV+PDALKVLRLQKGHKYC LG+LSSEVGWNYYDTI+ELEKKRKERAQ+ YER+KQLA
Sbjct: 121 KRMVVPDALKVLRLQKGHKYCHLGQLSSEVGWNYYDTIRELEKKRKERAQLCYERKKQLA 180

Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLRVKAEK AEE+LG Q+EI+AP+KY
Sbjct: 181 KLRVKAEKVAEEKLGSQIEILAPVKY 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2156569	206	AT5G48760 [Arabidopsis thalian	1.0	1.0	0.830	3.5e-91
TAIR|locus:2119335	206	AT4G13170 [Arabidopsis thalian	1.0	1.0	0.815	1.7e-89
TAIR|locus:2098530	207	AT3G07110 [Arabidopsis thalian	1.0	0.995	0.806	2.2e-89
TAIR|locus:2087268	206	AT3G24830 [Arabidopsis thalian	1.0	1.0	0.805	1.2e-88
UNIPROTKB|Q3SZ90	203	RPL13A "60S ribosomal protein	0.922	0.935	0.542	2.6e-54
UNIPROTKB|Q5RA38	203	RPL13A "60S ribosomal protein	0.922	0.935	0.536	5.5e-54
UNIPROTKB|F1PI16	203	RPL13A "60S ribosomal protein	0.922	0.935	0.536	7e-54
UNIPROTKB|P40429	203	RPL13A "60S ribosomal protein	0.922	0.935	0.536	7e-54
UNIPROTKB|F1RI01	204	RPL13A "60S ribosomal protein	0.922	0.931	0.536	1.5e-53
UNIPROTKB|Q4R8Z2	203	RPL13A "60S ribosomal protein	0.922	0.935	0.531	1.5e-53

TAIR|locus:2156569 AT5G48760 [Arabidopsis thaliana (taxid:3702)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 171/206 (83%), Positives = 183/206 (88%)

Query:     1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
             MVSGSGIC+KRVVVDARHHMLGRLAS+ AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYM
Sbjct:     1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60

Query:    61 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKT 120
             RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            YEGVP PYDK 
Sbjct:    61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120

Query:   121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
             KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERA V YER+KQL 
Sbjct:   121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLN 180

Query:   181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
             KLRVKAEK AEE+LG QL+I+AP+KY
Sbjct:   181 KLRVKAEKVAEEKLGAQLDILAPVKY 206

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2119335 AT4G13170 [Arabidopsis thaliana (taxid:3702)]

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 168/206 (81%), Positives = 181/206 (87%)

Query:     1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
             MVSGSGICAKRVVVD RHHMLGRLAS  AKELLNGQ+VVVVRCEEIC+SGGLVRQKMKYM
Sbjct:     1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60

Query:    61 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKT 120
             RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EG+P PYDK 
Sbjct:    61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120

Query:   121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
             KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+QV YER+KQL 
Sbjct:   121 KRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLN 180

Query:   181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
             KLR KAEK AEERLG QL+++AP+KY
Sbjct:   181 KLRTKAEKVAEERLGSQLDVLAPVKY 206

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2098530 AT3G07110 [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 167/207 (80%), Positives = 183/207 (88%)

Query:     1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
             MVSGSGICAKRVVVDARHHMLGRLASV+AK+LLNGQ +VVVRCEEIC+SGGLVRQKMKYM
Sbjct:     1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60

Query:    61 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKT 120
             RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EGVP PYDK 
Sbjct:    61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120

Query:   121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIK-ELEKKRKERAQVAYERRKQL 179
             KRMV+PDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIK ELE KRKERAQ  YER+KQL
Sbjct:   121 KRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKQELENKRKERAQAVYERKKQL 180

Query:   180 AKLRVKAEKAAEERLGPQLEIIAPIKY 206
             +KLR KAEK AEE+LG QL+++AP+KY
Sbjct:   181 SKLRAKAEKVAEEKLGSQLDVLAPVKY 207

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2087268 AT3G24830 [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 166/206 (80%), Positives = 180/206 (87%)

Query:     1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
             MVSGSGIC+KRVVVDARHHM GRLAS++AKELLNGQ VVVVRCEEIC+SGGLVRQKMKYM
Sbjct:     1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60

Query:    61 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKT 120
             RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EGVP PYDK 
Sbjct:    61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120

Query:   121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
             KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+Q  YER+KQL 
Sbjct:   121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLT 180

Query:   181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
             KLR KAEK AEE+LG QL+++A IKY
Sbjct:   181 KLRAKAEKVAEEKLGSQLDVLASIKY 206

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

UNIPROTKB|Q3SZ90 RPL13A "60S ribosomal protein L13a" [Bos taurus (taxid:9913)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 103/190 (54%), Positives = 139/190 (73%)

Query:    12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
             +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT P
Sbjct:     7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66

Query:    72 SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
             S GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV
Sbjct:    67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKV 126

Query:   132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
             +RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E
Sbjct:   127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIE 186

Query:   192 ERLGPQLEII 201
             +++G   E++
Sbjct:   187 KKIGKFTEVL 196

GO:1901194 "negative regulation of formation of translation preinitiation complex" evidence=ISS

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5RA38 RPL13A "60S ribosomal protein L13a" [Pongo abelii (taxid:9601)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 102/190 (53%), Positives = 138/190 (72%)

Query:    12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
             +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT P
Sbjct:     7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSP 66

Query:    72 SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
             S GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV
Sbjct:    67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126

Query:   132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
             +RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E
Sbjct:   127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVE 186

Query:   192 ERLGPQLEII 201
             +++    E++
Sbjct:   187 KKIDKYTEVL 196

GO:0017148 "negative regulation of translation" evidence=ISS

GO:1901194 "negative regulation of formation of translation preinitiation complex" evidence=ISS

UNIPROTKB|F1PI16 RPL13A "60S ribosomal protein L13a" [Canis lupus familiaris (taxid:9615)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 102/190 (53%), Positives = 138/190 (72%)

Query:    12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
             +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT P
Sbjct:     7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66

Query:    72 SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
             S GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV
Sbjct:    67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126

Query:   132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
             +RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E
Sbjct:   127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186

Query:   192 ERLGPQLEII 201
             +++    E++
Sbjct:   187 KKIDKYTEVL 196

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P40429 RPL13A "60S ribosomal protein L13a" [Homo sapiens (taxid:9606)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 102/190 (53%), Positives = 138/190 (72%)

Query:    12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
             +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT P
Sbjct:     7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66

Query:    72 SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
             S GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV
Sbjct:    67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126

Query:   132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
             +RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E
Sbjct:   127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186

Query:   192 ERLGPQLEII 201
             +++    E++
Sbjct:   187 KKIDKYTEVL 196

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0017148 "negative regulation of translation" evidence=IMP;IDA

GO:1901194 "negative regulation of formation of translation preinitiation complex" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0071346 "cellular response to interferon-gamma" evidence=IDA

GO:0015934 "large ribosomal subunit" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1RI01 RPL13A "60S ribosomal protein L13a" [Sus scrofa (taxid:9823)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 102/190 (53%), Positives = 138/190 (72%)

Query:    12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
             +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT P
Sbjct:     8 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 67

Query:    72 SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
             S GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV
Sbjct:    68 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 127

Query:   132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
             +RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E
Sbjct:   128 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 187

Query:   192 ERLGPQLEII 201
             +++    E++
Sbjct:   188 KKIDRFTEVL 197

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q4R8Z2 RPL13A "60S ribosomal protein L13a" [Macaca fascicularis (taxid:9541)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 101/190 (53%), Positives = 138/190 (72%)

Query:    12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
             +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT P
Sbjct:     7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66

Query:    72 SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
             S GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV
Sbjct:    67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126

Query:   132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
             +RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E
Sbjct:   127 VRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186

Query:   192 ERLGPQLEII 201
             +++    +++
Sbjct:   187 KKIDKYTQVL 196

GO:0017148 "negative regulation of translation" evidence=ISS

GO:1901194 "negative regulation of formation of translation preinitiation complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65055	RL13A_PICMA	No assigned EC number	0.8203	1.0	1.0	N/A	no
Q9SFU1	R13A1_ARATH	No assigned EC number	0.8592	1.0	1.0	no	no
Q9P720	RL16_NEUCR	No assigned EC number	0.5801	0.8737	0.8910	N/A	no
O42991	RL16B_SCHPO	No assigned EC number	0.5878	0.8009	0.8375	yes	no
P0DJ15	RL13A_TETTS	No assigned EC number	0.5340	0.8543	0.8888	N/A	no
Q9LRX8	R13A2_ARATH	No assigned EC number	0.8592	1.0	1.0	no	no
O49885	RL13A_LUPLU	No assigned EC number	0.8398	0.9951	1.0	N/A	no
P35427	RL13A_RAT	No assigned EC number	0.5842	0.9223	0.9359	yes	no
Q9SVR0	R13A3_ARATH	No assigned EC number	0.8689	1.0	1.0	no	no
Q3SZ90	RL13A_BOVIN	No assigned EC number	0.5894	0.9223	0.9359	yes	no
Q91487	RL13A_SALTR	No assigned EC number	0.5965	0.8543	0.9312	N/A	no
Q8MUR4	RL13A_CHOPR	No assigned EC number	0.5294	0.9708	0.9803	N/A	no
P19253	RL13A_MOUSE	No assigned EC number	0.5789	0.9223	0.9359	yes	no
Q962U0	RL13A_SPOFR	No assigned EC number	0.5245	0.9708	0.9803	N/A	no
O42848	RL16A_SCHPO	No assigned EC number	0.5468	0.9174	0.9593	yes	no
P93099	RL13A_CYAPA	No assigned EC number	0.6724	0.8446	0.87	N/A	no
Q27389	RL13A_CAEEL	No assigned EC number	0.5074	0.9708	0.9900	yes	no
Q4R8Z2	RL13A_MACFA	No assigned EC number	0.5789	0.9223	0.9359	N/A	no
Q9FKC0	R13A4_ARATH	No assigned EC number	0.8834	1.0	1.0	yes	no
P40429	RL13A_HUMAN	No assigned EC number	0.5842	0.9223	0.9359	yes	no
Q9VNE9	RL13A_DROME	No assigned EC number	0.5247	0.9805	0.9853	yes	no
Q553M7	RL13A_DICDI	No assigned EC number	0.5307	0.8689	0.9572	yes	no
Q5RA38	RL13A_PONAB	No assigned EC number	0.5842	0.9223	0.9359	yes	no
Q9XSU0	RL13A_CANFA	No assigned EC number	0.5736	0.9223	0.9359	yes	no
P26784	RL16A_YEAST	No assigned EC number	0.5265	0.9077	0.9396	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	OsI_13555	Os03g0756000 (206 aa)
		(Oryza sativa Indica)
Predicted Functional Partners:
	OsI_38771	Os12g0567700 (261 aa)	•			•	•	•	•		0.987
	BGIOSIBCE011997	Os05g0274900 (186 aa)				•	•	•	•		0.969
	RPS16B	40S ribosomal protein S16 (149 aa)	•			•	•	•	•		0.968
	RPS16A	40S ribosomal protein S16 (149 aa)	•			•	•	•	•		0.968
	OsI_13996	Os03g0807800 (274 aa)	•			•		•	•		0.959
	RPL9	60S ribosomal protein L9 (190 aa)	•			•	•	•	•		0.958
	RPL21	Os10g0465800 (164 aa)				•	•	•	•		0.950
	OsI_25075	Os03g0794700 (204 aa)	•			•	•	•	•		0.949
	OsI_25124	Os07g0180900 (405 aa)				•	•	•	•		0.940
	OsI_13875	Os07g0173500 (192 aa)	•			•	•	•	•		0.933

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
PTZ00068	202	PTZ00068, PTZ00068, 60S ribosomal protein L13a; Pr	2e-87
TIGR01077	142	TIGR01077, L13_A_E, ribosomal protein L13, archaea	2e-54
cd00392	114	cd00392, Ribosomal_L13, Ribosomal protein L13	2e-37
pfam00572	128	pfam00572, Ribosomal_L13, Ribosomal protein L13	3e-33
PRK06394	146	PRK06394, rpl13p, 50S ribosomal protein L13P; Revi	2e-30
COG0102	148	COG0102, RplM, Ribosomal protein L13 [Translation,	3e-26
PRK09216	144	PRK09216, rplM, 50S ribosomal protein L13; Reviewe	8e-06
TIGR01066	140	TIGR01066, rplM_bact, ribosomal protein L13, bacte	1e-05
CHL00159	143	CHL00159, rpl13, ribosomal protein L13; Validated	2e-04

>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional

 Score =  256 bits (655), Expect = 2e-87
 Identities = 113/181 (62%), Positives = 139/181 (76%)

Query: 10  KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
           K +V+D + H+LGRLASV+AKELL GQK+VVVRCE++ ISG L R K+KY  FLRKRMNT
Sbjct: 4   KVIVIDCKGHLLGRLASVVAKELLLGQKIVVVRCEDLNISGSLFRNKVKYEEFLRKRMNT 63

Query: 70  KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
            P  GP H RAP+ I WRT+RGM+PHKTKRGAAAL RLK +EGVPAPYDK KR+VIP AL
Sbjct: 64  NPRRGPFHHRAPSDIFWRTVRGMLPHKTKRGAAALKRLKVFEGVPAPYDKVKRVVIPSAL 123

Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKA 189
           +VLRL+    Y +LG LS+ VGW Y D + +LE+KRKERA   Y+++ +L K   +A K 
Sbjct: 124 RVLRLKPERPYTVLGDLSAHVGWKYADVVAKLEEKRKERAAAYYKKKVKLRKAWKEARKK 183

Query: 190 A 190
           A
Sbjct: 184 A 184

Length = 202

>gnl|CDD|162192 TIGR01077, L13_A_E, ribosomal protein L13, archaeal/eukaryotic

 Score =  170 bits (432), Expect = 2e-54
 Identities = 82/143 (57%), Positives = 99/143 (69%), Gaps = 1/143 (0%)

Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
            V+D   H+LGRLASV+AK+LLNG+KVVVV  E+I ISG   R K+KY  FLRKR  T P
Sbjct: 1   TVIDGSGHILGRLASVVAKQLLNGEKVVVVNAEKIVISGNFYRNKLKYKEFLRKRTLTNP 60

Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
             GP   RAP++I  RT+RGM+PHKT RG AAL RLK Y G+P   DK KR+V+P+AL V
Sbjct: 61  RRGPFFPRAPSRIFRRTVRGMLPHKTARGRAALRRLKVYVGIPPELDKKKRVVVPEAL-V 119

Query: 132 LRLQKGHKYCLLGRLSSEVGWNY 154
            RL    KY  LG L+  +GW Y
Sbjct: 120 SRLSPTRKYVTLGELAKFLGWKY 142

This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by model TIGR01066 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 142

>gnl|CDD|238230 cd00392, Ribosomal_L13, Ribosomal protein L13

 Score =  125 bits (317), Expect = 2e-37
 Identities = 52/114 (45%), Positives = 64/114 (56%), Gaps = 13/114 (11%)

Query: 12  VVVDARHHMLGRLASVLAKELLN------------GQKVVVVRCEEICISGGLVRQKMKY 59
            V+DA+  +LGRLAS +AK LL             G  VVVV  E+I I+G   RQK+ Y
Sbjct: 2   HVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVYY 61

Query: 60  MRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGV 113
                      P+ GP+H RAP +IL R +RGM+P K K G AAL RLK YEG 
Sbjct: 62  RHTGYPGGLKNPTAGPLHPRAPERILKRAVRGMLP-KNKLGRAALKRLKVYEGA 114

Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies. Length = 114

>gnl|CDD|201314 pfam00572, Ribosomal_L13, Ribosomal protein L13

 Score =  115 bits (291), Expect = 3e-33
 Identities = 48/129 (37%), Positives = 63/129 (48%), Gaps = 15/129 (11%)

Query: 12  VVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 59
            V+DA+  +LGRLAS +AK L              G  VVV+  E+I ++G   R + KY
Sbjct: 2   HVIDAKGQILGRLASKVAKLLRGKHKPTYTPHVDCGDYVVVINAEKIVLTG-KKRDQKKY 60

Query: 60  MR-FLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYD 118
            R          P+      R P +IL R +RGM+P K K G AAL RLK Y G P P+ 
Sbjct: 61  YRHTGYPGGLKNPTAKGPLERKPERILERAVRGMLP-KNKLGRAALKRLKVYAGSPHPHA 119

Query: 119 KTKRMVIPD 127
             K  V+  
Sbjct: 120 AQKPEVLEI 128

Length = 128

>gnl|CDD|235793 PRK06394, rpl13p, 50S ribosomal protein L13P; Reviewed

 Score =  108 bits (273), Expect = 2e-30
 Identities = 59/144 (40%), Positives = 81/144 (56%), Gaps = 3/144 (2%)

Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           VV+DA   +LGRLAS +AK LL G++VV+V  E+  I+G   R   KY +   +  +  P
Sbjct: 5   VVIDAEGQILGRLASYVAKRLLEGEEVVIVNAEKAVITGNRERVIEKYKQRRERGSHYNP 64

Query: 72  SHGPIHF-RAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK 130
                 + R P +I  RTIRGM+P+K  RG  AL RLK Y GVP   +  +  VI +A  
Sbjct: 65  YRNGPKYPRRPDRIFKRTIRGMLPYKKPRGREALKRLKVYVGVPKELEGKEFEVIDEAD- 123

Query: 131 VLRLQKGHKYCLLGRLSSEVGWNY 154
           + RL    KY  LG +S E+G  +
Sbjct: 124 LSRL-STIKYVTLGEVSKELGAKF 146

Length = 146

>gnl|CDD|223180 COG0102, RplM, Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]

 Score = 98.1 bits (245), Expect = 3e-26
 Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 18/138 (13%)

Query: 12  VVVDARHHMLGRLASVLAKELLN------------GQKVVVVRCEEICISGGLVRQKMKY 59
            V+DA   +LGRLAS +AK L              G  V+V+  E++ I+G  +  K  Y
Sbjct: 16  YVIDAEGKVLGRLASEVAKRLRGKHKPTYTPHVDTGDYVIVINAEKVVITGKKLTDKKYY 75

Query: 60  MRFLRKRMNTKPS-HGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYD 118
                      P+  GP+  R P +IL R +RGM+P K   G AAL RLK Y G+P P+ 
Sbjct: 76  RHSGYPGGLKNPTRGGPLAPRRPERILERAVRGMLP-KNPLGRAALKRLKVYAGIPHPH- 133

Query: 119 KTKRMVIPDALKVLRLQK 136
                  P+AL++  L+ 
Sbjct: 134 ---EAQKPEALELKLLKG 148

Length = 148

>gnl|CDD|181703 PRK09216, rplM, 50S ribosomal protein L13; Reviewed

 Score = 43.5 bits (104), Expect = 8e-06
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 33/123 (26%)

Query: 12  VVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 59
            V+DA   +LGRLAS +A  L              G  V+V+  E++ ++G  +  K+ Y
Sbjct: 16  YVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKVKLTGKKLTDKIYY 75

Query: 60  --------MRF--LRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKA 109
                   ++     + +  K          P +++ + ++GM+P K   G A   +LK 
Sbjct: 76  RHSGYPGGLKEITFGELLAKK----------PERVIEKAVKGMLP-KNPLGRAMFKKLKV 124

Query: 110 YEG 112
           Y G
Sbjct: 125 YAG 127

Length = 144

>gnl|CDD|162186 TIGR01066, rplM_bact, ribosomal protein L13, bacterial type

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 33/122 (27%)

Query: 13  VVDARHHMLGRLASVLAKELLNGQK------------VVVVRCEEICISGGLVRQKMKYM 60
           VVDA    LGRLAS +A+ L    K            V+V+  E++ ++G  + QK+ Y 
Sbjct: 15  VVDAAGKTLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKVRLTGKKLEQKVYYR 74

Query: 61  ----------RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAY 110
                     R   + +           R P ++L   ++GM+P K + G     +LK Y
Sbjct: 75  HSGYPGGLKSRTFEEMIA----------RKPERVLEHAVKGMLP-KNRLGRKLFKKLKVY 123

Query: 111 EG 112
            G
Sbjct: 124 AG 125

This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 140

>gnl|CDD|177072 CHL00159, rpl13, ribosomal protein L13; Validated

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 25/118 (21%)

Query: 13  VVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYM 60
           ++DA+   LGRLA+ +A  L              G  V+V+  E+I ++G          
Sbjct: 18  IIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKIKVTG-----NKTSQ 72

Query: 61  RFLRKRMNTKPSHGPI------HFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEG 112
           +F   R + +P    I        R P +I+ + ++GM+P K   G     +LK Y+G
Sbjct: 73  KFYV-RHSGRPGGLKIETFEELQNRLPNRIIEKAVKGMLP-KGPLGRKLFTKLKVYKG 128

Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
PTZ00068	202	60S ribosomal protein L13a; Provisional	100.0
KOG3204	197	consensus 60S ribosomal protein L13a [Translation,	100.0
TIGR01077	142	L13_A_E ribosomal protein L13, archaeal/eukaryotic	100.0
PRK06394	146	rpl13p 50S ribosomal protein L13P; Reviewed	100.0
PRK09216	144	rplM 50S ribosomal protein L13; Reviewed	100.0
TIGR01066	140	rplM_bact ribosomal protein L13, bacterial type. T	100.0
COG0102	148	RplM Ribosomal protein L13 [Translation, ribosomal	100.0
CHL00159	143	rpl13 ribosomal protein L13; Validated	100.0
PF00572	128	Ribosomal_L13: Ribosomal protein L13; InterPro: IP	100.0
PLN00205	191	ribisomal protein L13 family protein; Provisional	100.0
cd00392	114	Ribosomal_L13 Ribosomal protein L13. Protein L13,	100.0
KOG3203	165	consensus Mitochondrial/chloroplast ribosomal prot	100.0

>PTZ00068 60S ribosomal protein L13a; Provisional

Probab=100.00  E-value=4.3e-78  Score=513.05  Aligned_cols=199  Identities=58%  Similarity=0.968  Sum_probs=195.8

Q ss_pred             cceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHHH
Q 028623            8 CAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWR   87 (206)
Q Consensus         8 ~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~r   87 (206)
                      +.+|+||||+||+||||||+||+.|++||+|||||||+|+|||+++++|.||++|+++++++||..||+|+|+|++|||+
T Consensus         2 ~~~w~vIDA~g~vLGRLAS~VAk~Ll~Gd~VVVVNaeki~iTG~k~~~K~~y~~~lk~~~~~nP~~g~~~~r~P~~Il~r   81 (202)
T PTZ00068          2 FKKVIVIDCKGHLLGRLASVVAKELLLGQKIVVVRCEDLNISGSLFRNKVKYEEFLRKRMNTNPRRGPFHHRAPSDIFWR   81 (202)
T ss_pred             CCceEEEECCCCcHHHHHHHHHHHHhCCCEEEEEecceeEeecchhhheeeeEeeeEeeccCCCCcchhcccCHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHHHHHH
Q 028623           88 TIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKE  167 (206)
Q Consensus        88 aVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~~~vv~~le~krk~  167 (206)
                      ||||||||||++|+++|+||+||+|+||||+++++++||+|+++.+|+|+++||+|||||++|||+|+|||++||++|++
T Consensus        82 aVrGMLPkk~~~Gr~alkrLkVy~G~php~~~~k~~vvp~A~r~~rl~~~~ky~~lg~ls~~vGwky~~vv~~le~krk~  161 (202)
T PTZ00068         82 TVRGMLPHKTKRGAAALKRLKVFEGVPAPYDKVKRVVIPSALRVLRLKPERPYTVLGDLSAHVGWKYADVVAKLEEKRKE  161 (202)
T ss_pred             HHhhhCCCCChhHHHHHhCCEEecCCCCchhccCcccccchhhhhccCCCCceeeHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHhhccCCC
Q 028623          168 RAQVAYERRKQLAKLRVKAEKAAEERL-GPQLEIIAPIKY  206 (206)
Q Consensus       168 k~~~~~~~k~~~~~~~~~a~~~~~~~~-~~~~~~l~~~g~  206 (206)
                      ++++||++|++..+++++|++++++++ .+++++|+++||
T Consensus       162 k~~~~~~~k~~~~k~~~~a~~~~~~~~~~~~~~~l~~~gy  201 (202)
T PTZ00068        162 RAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKKFGY  201 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCC
Confidence            999999999999999999999999999 679999999998

>KOG3204 consensus 60S ribosomal protein L13a [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-68  Score=450.52  Aligned_cols=194  Identities=56%  Similarity=0.952  Sum_probs=190.2

Q ss_pred             cccceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHH
Q 028623            6 GICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIL   85 (206)
Q Consensus         6 ~~~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~   85 (206)
                      +...+..+||+.||++|||||+|||+|+.|++||||+||+|+|||+++|||    .||+++|++|   ||||+|.|++||
T Consensus         2 ~~~~~~~vidg~~hllGrlAa~vaK~ll~g~kvvvvr~E~i~isg~f~r~k----~~lrk~~~~n---g~~hfr~ps~i~   74 (197)
T KOG3204|consen    2 MLEVKLVVIDGRGHLLGRLAAIVAKQLLLGRKVVVVRCEEINISGNFYRNK----LFLRKRLNRN---GPFHFRAPSRIL   74 (197)
T ss_pred             cceEEEeeccchhhhhhhHHHHHHHHHhcCCeEEEEEEeEEEEecceecch----HHHhhhhccc---CcchhhhHHHHH
Confidence            445778999999999999999999999999999999999999999999999    7999999999   899999999999


Q ss_pred             HHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHHHH
Q 028623           86 WRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKR  165 (206)
Q Consensus        86 ~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~~~vv~~le~kr  165 (206)
                      +++||||+|||+++|+.++++|++|+|+|+||+.++++++|.|++|++|+|++|||+||+|||+||||||||+++||+||
T Consensus        75 ~~~vrgm~~~kt~rg~aal~~l~~~eGip~~~dk~~r~v~p~a~~v~~lk~~~K~c~lG~L~~eVGWkyq~vtatLEeKR  154 (197)
T KOG3204|consen   75 QKAVRGMYPHKTKRGRAALERLRVFEGIPPPYDKQKRLVVPVAFQVLRLKPYKKYCLLGRLSHEVGWKYQAVTATLEEKR  154 (197)
T ss_pred             HHhhccccccCCCccHHHHHHHHHhCCCCChhhhcCCccCCcceeeecccCCceeEEeccchhhhcchhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028623          166 KERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY  206 (206)
Q Consensus       166 k~k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~  206 (206)
                      |+|+++||++|+++++++++|++|++++|++|+++|+++||
T Consensus       155 KeK~~~~y~kKkql~kl~~~Aekn~~kkidky~e~l~~~g~  195 (197)
T KOG3204|consen  155 KEKAKIHYQKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL  195 (197)
T ss_pred             hHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999997

>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic

Probab=100.00  E-value=5.5e-55  Score=354.53  Aligned_cols=142  Identities=57%  Similarity=0.948  Sum_probs=136.7

Q ss_pred             EEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHHHHHhc
Q 028623           12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRG   91 (206)
Q Consensus        12 ~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~raVrG   91 (206)
                      +||||+||+||||||.||+.|+|||+|||||||+|.+||++++++.||.++.+..+..+|..|++++++|++||++||+|
T Consensus         1 ivIDA~~~vlGRLAs~IA~~L~~Gd~VvViNaeki~~TG~k~~~k~~y~~~~~~g~~~~~~~~~~~~r~P~~il~~aVrG   80 (142)
T TIGR01077         1 TVIDGSGHILGRLASVVAKQLLNGEKVVVVNAEKIVISGNFYRNKLKYKEFLRKRTLTNPRRGPFFPRAPSRIFRRTVRG   80 (142)
T ss_pred             CEEeCCCCchHHHHHHHHHHHhcCCEEEEEechHheecCchhhheeEEEEECCCCCcccCCHHHhhhcCHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999987777788888877999999999999999999


Q ss_pred             cCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcch
Q 028623           92 MIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY  154 (206)
Q Consensus        92 MLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~  154 (206)
                      |||+++.+|+.+|+||+||+|+||||++|+++++|+|+ +.+++|.||||+|||||+.+||||
T Consensus        81 MLPk~~~~Gr~~~krLkvy~G~~h~~~~qk~~~~~~a~-~~~~~~~~~~~~lg~l~~~~G~k~  142 (142)
T TIGR01077        81 MLPHKTARGRAALRRLKVYVGIPPELDKKKRVVVPEAL-VSRLSPTRKYVTLGELAKFLGWKF  142 (142)
T ss_pred             hCCCCChhHHHHHhCcEEecCCCCCccccCccccChhh-hhccCCCCceEEHHHHHHHhCCcC
Confidence            99986799999999999999999999999999999998 999999999999999999999997

This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.

>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed

Probab=100.00  E-value=3.6e-50  Score=327.66  Aligned_cols=141  Identities=43%  Similarity=0.616  Sum_probs=134.7

Q ss_pred             ceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC-CCccccCchHHHHH
Q 028623            9 AKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKILWR   87 (206)
Q Consensus         9 ~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~-g~~~~r~P~~I~~r   87 (206)
                      ++.+||||+||+||||||.||+.|++||+|||||||+|.+||++++++.+|..|++.++..||.. +++++++|++||++
T Consensus         2 ~~~~viDA~~~vlGRLAs~IA~~L~~Gd~VVViNa~kv~~tG~K~~~~~~y~~~~~~k~~~np~~~~~~~~r~P~~il~~   81 (146)
T PRK06394          2 EAMVVIDAEGQILGRLASYVAKRLLEGEEVVIVNAEKAVITGNRERVIEKYKQRRERGSHYNPYRNGPKYPRRPDRIFKR   81 (146)
T ss_pred             CccEEEECCCCchHHHHHHHHHHHhCCCEEEEEechheEecCchhhheeeEeCCCCCcccCCCCChHHhhhcCHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999965 99999999999999


Q ss_pred             HHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhC
Q 028623           88 TIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG  151 (206)
Q Consensus        88 aVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vG  151 (206)
                      ||+||||+||.+|+.+|+||+||+|+||||++|+++++|.|+. .++. +|+||+|||||+++|
T Consensus        82 AV~gMLP~kn~~gr~~~~rLkvy~G~~h~~~~qkp~~~~~a~~-~~~~-~~k~~~lgel~~~~G  143 (146)
T PRK06394         82 TIRGMLPYKKPRGREALKRLKVYVGVPKELEGKEFEVIDEADL-SRLS-TIKYVTLGEVSKELG  143 (146)
T ss_pred             HHHhcCCCCChhHHHHHhCcEEecCCCCCcccCCCEEecHHHH-hccC-CCCcEEHHHHHHHhC
Confidence            9999999889999999999999999999999999999999986 6787 699999999999999

>PRK09216 rplM 50S ribosomal protein L13; Reviewed

Probab=100.00  E-value=3.8e-44  Score=291.68  Aligned_cols=119  Identities=29%  Similarity=0.522  Sum_probs=111.4

Q ss_pred             CCCCCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhccccc
Q 028623            1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMN   68 (206)
Q Consensus         1 ~~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~   68 (206)
                      |+++..+.++|+||||+||+||||||.||+.|+            |||+|||||||+|.+||+++++|.||.      |+
T Consensus         5 ~~~~~~~~~~W~viDA~~~~lGRlAs~IAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~------ht   78 (144)
T PRK09216          5 SAKPAEVERKWYVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKVKLTGKKLTDKIYYR------HS   78 (144)
T ss_pred             cCChhhcCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCCCCCCEEEEEeCceeEEcCchHhheeeEE------ec
Confidence            345667789999999999999999999999999            999999999999999999999999996      99


Q ss_pred             ccCCC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhh
Q 028623           69 TKPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK  130 (206)
Q Consensus        69 ~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~  130 (206)
                      ++||+      +++++|+|++||++||+||||+ |.+|+.+|+||+||+|++|||++|+    |..+.
T Consensus        79 g~pGglk~~~~~~~~~r~P~~il~~aVrgMLPk-n~lgr~~~~rLkvy~G~~hp~~~q~----p~~~~  141 (144)
T PRK09216         79 GYPGGLKEITFGELLAKKPERVIEKAVKGMLPK-NPLGRAMFKKLKVYAGAEHPHAAQQ----PEVLE  141 (144)
T ss_pred             ccCCCCEEecHHHHhhhCHHHHHHHHHHhcCCC-CccHHHHHhCcEEeCCCCCCccccC----CEecc
Confidence            99986      8999999999999999999995 9999999999999999999999998    66543

>TIGR01066 rplM_bact ribosomal protein L13, bacterial type

Probab=100.00  E-value=8.3e-44  Score=288.52  Aligned_cols=111  Identities=32%  Similarity=0.508  Sum_probs=106.8

Q ss_pred             CCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccC
Q 028623            4 GSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP   71 (206)
Q Consensus         4 ~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P   71 (206)
                      ...+.++|+||||+||+||||||.||+.|+            |||+|||||||+|.|||+++++|.||.      |+++|
T Consensus         6 ~~~~~r~W~viDA~~~~lGRLAs~iAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~------htg~p   79 (140)
T TIGR01066         6 SDDKKRKWYVVDAAGKTLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKVRLTGKKLEQKVYYR------HSGYP   79 (140)
T ss_pred             hhhhcccEEEEeCCCCchHHHHHHHHHHHhccCCCccCCCccCCCEEEEEeccEEEEeCchhhceeeEE------EcccC
Confidence            456789999999999999999999999999            999999999999999999999999996      99999


Q ss_pred             CC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccc
Q 028623           72 SH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTK  121 (206)
Q Consensus        72 ~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k  121 (206)
                      |+      +++++++|++||++||+|||| ||.+|+.+|+||+||+|+||||++|+
T Consensus        80 gg~k~~~~~~~~~r~P~~ii~~aVrGMLP-kn~lgr~~l~rLkvy~G~~hp~~~q~  134 (140)
T TIGR01066        80 GGLKSRTFEEMIARKPERVLEHAVKGMLP-KNRLGRKLFKKLKVYAGSEHPHEAQK  134 (140)
T ss_pred             CccccccHHHhhhcCHHHHHHHHHHhcCC-CCccHHHHHhCeEEeCCCCCChhhcC
Confidence            86      899999999999999999999 69999999999999999999999998

This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.

>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.2e-43  Score=285.64  Aligned_cols=123  Identities=41%  Similarity=0.645  Sum_probs=113.2

Q ss_pred             CCCCCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhccccc
Q 028623            1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMN   68 (206)
Q Consensus         1 ~~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~   68 (206)
                      +++++.+.++|+||||+|++||||||.||+.|+            |||+|||||||+|+|||++..+|.||+      |+
T Consensus         5 ~~k~~~~~r~w~vIDA~g~vLGRLAs~VA~~Lrgkhkp~ytP~~d~Gd~ViVINAeKv~iTG~K~~~k~yy~------hs   78 (148)
T COG0102           5 TAKPSEVERKWYVIDAEGKVLGRLASEVAKRLRGKHKPTYTPHVDTGDYVIVINAEKVVITGKKLTDKKYYR------HS   78 (148)
T ss_pred             ccCcccccceEEEEeCCCCChHHHHHHHHHHHhcCCCCCcCcCcCCCCEEEEEeceeeEEecccccceEEEE------ee
Confidence            356777899999999999999999999999998            679999999999999999999999997      88


Q ss_pred             ccCCC-------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhc
Q 028623           69 TKPSH-------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRL  134 (206)
Q Consensus        69 ~~P~~-------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl  134 (206)
                      ++||+       +++++|.|++||++||+||||+ |++|+++|+||+||.|+||||..|+    |+++.+..+
T Consensus        79 ~~~gglk~~t~~~~~~~r~P~ri~~~AVrGMLPk-~~lGr~~~krLkVy~G~~h~~~aq~----p~~l~~~~~  146 (148)
T COG0102          79 GYPGGLKNPTRGGPLAPRRPERILERAVRGMLPK-NPLGRAALKRLKVYAGIPHPHEAQK----PEALELKLL  146 (148)
T ss_pred             ccCCcccccccccccccCCHHHHHHHHHhccCCC-ChhHHHHHhCceEecCCCCcccccc----chhhhhhcc
Confidence            99873       8888899999999999999996 9999999999999999999999997    988766433

>CHL00159 rpl13 ribosomal protein L13; Validated

Probab=100.00  E-value=5.1e-43  Score=284.71  Aligned_cols=114  Identities=30%  Similarity=0.479  Sum_probs=107.6

Q ss_pred             CCCCCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhccccc
Q 028623            1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMN   68 (206)
Q Consensus         1 ~~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~   68 (206)
                      ++++..+.++|+||||+||+||||||.||+.|+            |||+|||||||+|.+||+++++|.||.      |+
T Consensus         6 ~~~~~~~~r~W~viDA~~~~lGRlAs~iA~~L~GKhKp~ytP~~d~Gd~VVViNa~kv~~TG~K~~~K~y~~------ht   79 (143)
T CHL00159          6 IPSKDYKNRKWYIIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKIKVTGNKTSQKFYVR------HS   79 (143)
T ss_pred             cCCchhcCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEecceeEEeCchhhheEEEe------cC
Confidence            356677889999999999999999999999999            999999999999999999999998764      99


Q ss_pred             ccCCC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccc
Q 028623           69 TKPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTK  121 (206)
Q Consensus        69 ~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k  121 (206)
                      ++||+      +++++++|++||++||+|||| ||.+|+.+|+||+||+|.+|||++|+
T Consensus        80 g~pGg~k~~~~~~~~~r~P~~il~~aV~gMLP-kn~lgr~~~~rLkvy~G~~hph~aq~  137 (143)
T CHL00159         80 GRPGGLKIETFEELQNRLPNRIIEKAVKGMLP-KGPLGRKLFTKLKVYKGESHPHVAQK  137 (143)
T ss_pred             CCCCCcccccHHHHhhcCHHHHHHHHHHhcCC-CChhHHHHHhCCEEeCCCCCCccccC
Confidence            99985      689999999999999999999 59999999999999999999999998

>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=9.2e-42  Score=272.80  Aligned_cols=109  Identities=43%  Similarity=0.670  Sum_probs=102.6

Q ss_pred             EEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC-----
Q 028623           11 RVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH-----   73 (206)
Q Consensus        11 w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~-----   73 (206)
                      |+||||+||+||||||.||+.|+            |||+|||||||+|.+||+++.++.||.      |++||++     
T Consensus         1 W~viDA~~~~lGRLAs~iAk~L~GKhk~~y~p~~d~Gd~VvViNae~i~~tG~k~~~k~y~~------h~~~~g~~~~~~   74 (128)
T PF00572_consen    1 WYVIDAKGQILGRLASKIAKLLLGKHKPTYTPNVDCGDHVVVINAEKIVLTGKKWRQKVYYR------HTGYPGGLKNPT   74 (128)
T ss_dssp             EEEEETTTBBHHHHHHHHHHHHCTTSSTSSBTTSSTTEEEEEECGGGBEESSHHHHHHHHHH------EHSSSTSCEEEE
T ss_pred             CEEEeCCCCchHHHHHHHHHHHhCCCCCccCcCccCCCEEEEEcCeeeEecCCeecceEEEe------ecccchhhcccc
Confidence            99999999999999999999999            999999999999999999999999997      7888875     


Q ss_pred             -CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCC
Q 028623           74 -GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIP  126 (206)
Q Consensus        74 -g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP  126 (206)
                       +.+++++|++||++||+||||+ |.+|+++|+||+||+|+||||++|+++++|
T Consensus        75 ~~~~~~~~P~~i~~~aVrgMLP~-n~~g~~~l~rL~vy~g~~hp~~~~~~~~~~  127 (128)
T PF00572_consen   75 AKGLHEKDPSRILKRAVRGMLPK-NKLGREALKRLKVYPGEPHPHAAQKPVVLE  127 (128)
T ss_dssp             CHHHHCSSHHHHHHHHHHTTSTT-SHHHHHHHTTEEEESSSSCSTTSSSCBEEE
T ss_pred             hhhhhhcCHHHHHHHHHHHHCCC-ChhhhHHhhceEEECCCCCChhccCCEeCC
Confidence             4566699999999999999996 999999999999999999999999976664

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....

>PLN00205 ribisomal protein L13 family protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=280.72  Aligned_cols=110  Identities=20%  Similarity=0.361  Sum_probs=103.5

Q ss_pred             cceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC--
Q 028623            8 CAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH--   73 (206)
Q Consensus         8 ~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~--   73 (206)
                      .++|+||||+||+||||||+||+.|+            |||+|||||||+|.|||++|.+|.||.      |++|||+  
T Consensus        14 ~r~W~VIDA~~~iLGRLAS~IAk~L~GKhKP~ytP~~D~GD~VVVINAekI~lTG~K~~~K~Y~~------htgypGglk   87 (191)
T PLN00205         14 GLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYAPNRDDGDICIVLNAKDISVTGRKLTDKFYRW------HTGYIGHLK   87 (191)
T ss_pred             CCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEeccEEEEeCChhhcceEEE------ecCCCCCcc
Confidence            57899999999999999999999999            999999999999999999999999886      9999986  


Q ss_pred             ----CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCcccccccc
Q 028623           74 ----GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMV  124 (206)
Q Consensus        74 ----g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~v  124 (206)
                          +++++++|++||++||+||||+ |.+|+.+++||+||+|+||||++|+.++
T Consensus        88 ~~~~~~~~~r~P~~Il~kAVrGMLPk-n~lr~~~~krLkVY~G~~hp~~~q~p~~  141 (191)
T PLN00205         88 ERSLKDQMAKDPTEVIRKAVLRMLPR-NRLRDDRDRKLRIFAGSEHPFGDKPLEP  141 (191)
T ss_pred             cccHHHHhccCHHHHHHHHHHhcCCC-CchHHHHHhCCEEECCCCCChhccCCeE
Confidence                7899999999999999999996 7777779999999999999999998644

>cd00392 Ribosomal_L13 Ribosomal protein L13

Probab=100.00  E-value=4.9e-38  Score=246.99  Aligned_cols=96  Identities=54%  Similarity=0.783  Sum_probs=91.5

Q ss_pred             EEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC-----
Q 028623           11 RVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH-----   73 (206)
Q Consensus        11 w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~-----   73 (206)
                      |+||||+||+||||||.||+.|+            |||+|||||||+|.+||+++++|.||.      |+++|++     
T Consensus         1 w~viDA~~~~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~i~~tG~k~~~k~y~~------~~~~~g~~~~~~   74 (114)
T cd00392           1 WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVYYR------HTGYPGGLKNPT   74 (114)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccEEEEeCchhhccceEE------eccCCCCCccCC
Confidence            89999999999999999999999            499999999999999999999999997      7777764     


Q ss_pred             -CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCC
Q 028623           74 -GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGV  113 (206)
Q Consensus        74 -g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~  113 (206)
                       +++++++|++||++||+|||| ||.+|+++|+||+||+|.
T Consensus        75 ~~~~~~~~P~~il~~aV~gMLP-kn~~g~~~l~rLkvy~g~  114 (114)
T cd00392          75 AGPLHPRAPERILKRAVRGMLP-KNKLGRAALKRLKVYEGA  114 (114)
T ss_pred             cchhhhhCHHHHHHHHHHhcCC-CChhHHHHHhCcEEeCCC
Confidence             999999999999999999999 799999999999999995

Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.

>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-34  Score=236.14  Aligned_cols=108  Identities=31%  Similarity=0.443  Sum_probs=102.0

Q ss_pred             CcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCC
Q 028623            5 SGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPS   72 (206)
Q Consensus         5 ~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~   72 (206)
                      ..|++.|+||||++++||||||.||..|.            |||+|||+||++|.+||++|.+|.|+.      |++|||
T Consensus        17 ~afaRvW~vvDa~~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N~~~Ia~sG~K~~qk~Y~~------HsGyPG   90 (165)
T KOG3203|consen   17 LAFARVWHVVDAKQQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTNCKKIAFSGKKWEQKIYRS------HSGYPG   90 (165)
T ss_pred             HHHhhhheeeccccCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEecchhheeccchhhhhhhhh------cCCCCC
Confidence            46789999999999999999999999997            999999999999999999999999886      999999


Q ss_pred             C------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccc
Q 028623           73 H------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDK  119 (206)
Q Consensus        73 ~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~  119 (206)
                      +      ..++.++|++|+++||+|||| ||.+++..++||++|+|..|||+.
T Consensus        91 ~lk~~~~~q~~~rdp~~Iv~~AV~gMLP-kN~Lrr~~~~rL~lf~g~e~p~~~  142 (165)
T KOG3203|consen   91 GLKQTTADQLADRDPCRIVRLAVYGMLP-KNLLRRRRMQRLHLFPGEEHPEKV  142 (165)
T ss_pred             chhhhHHHHHhhhCHHHHHHHHHHhhCc-cchHHHHHhheeeccCCccCchhh
Confidence            6      678899999999999999999 699999999999999999999553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
3izr_K	206	Localization Of The Large Subunit Ribosomal Protein		1e-100
2zkr_j	203	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-56
3izs_K	199	Localization Of The Large Subunit Ribosomal Protein		2e-48
4a17_I	198	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-45
3jyw_M	178	Structure Of The 60s Proteins For Eukaryotic Riboso		3e-42
1s1i_M	146	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		4e-42
4b6a_O	217	Cryo-Em Structure Of The 60s Ribosomal Subunit In C		2e-37
3u5i_O	217	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-36
3zf7_O	222	High-resolution Cryo-electron Microscopy Structure		1e-31
3g4s_J	142	Co-Crystal Structure Of Tiamulin Bound To The Large		5e-13
1ffk_G	145	Crystal Structure Of The Large Ribosomal Subunit Fr		5e-13
3j21_I	142	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-12
1j3a_A	142	Crystal Structure Of Ribosomal Protein L13 From Pyr		3e-12

>pdb|3IZR|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 206

Iteration: 1
 Score =  359 bits (921), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/206 (83%), Positives = 189/206 (91%)
Query: 1   MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
           MVSGSG+CAKRVVVDARHHMLGRLAS++AKELLNGQ+VVVVRCEEIC+SGGLVRQKMKY+
Sbjct: 1   MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60
Query: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKT 120
           RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKT            YEGVP PYD+T
Sbjct: 61  RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
           KRMVIPDALKVLRLQ GH+YCLLG+LS EVGWNY DTI+ELE+KRKE+A+V+Y+RRKQLA
Sbjct: 121 KRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRELEEKRKEKAKVSYDRRKQLA 180
Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
           KLRVKAEKAAEE+LG QLEI+APIKY
Sbjct: 181 KLRVKAEKAAEEKLGTQLEILAPIKY 206

>pdb|2ZKR|JJ Chain j, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 203

Iteration: 1
 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 136/190 (71%)
Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+ Y+ FLRKRMNT P
Sbjct: 7   LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNP 66
Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
           S GP  FRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV
Sbjct: 67  SRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
           +RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186
Query: 192 ERLGPQLEII 201
           +++    E++
Sbjct: 187 KKIDKYTEVL 196

>pdb|3IZS|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 199

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           VV+D + H++GRLASV+AK+LLNGQK+VVVR EE+ ISG   R K+KY  FLRK      
Sbjct: 7   VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 66
Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
           + GP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+V
Sbjct: 67  TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 126
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAE-KAA 190
           LRL+ G KY  LG+LS+ VGW Y D + +LE KRK  +   Y +++   K    A   AA
Sbjct: 127 LRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAA 186
Query: 191 EERLGPQLEII 201
           E  +  QL  +
Sbjct: 187 ESDVAKQLAAL 197

>pdb|4A17|I Chain I, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 198

Iteration: 1
 Score =  176 bits (446), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 117/176 (66%)
Query: 10  KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
           K VV+DA+ H+LGRLAS +AKELL+GQ++VVVR E I ISG L R ++K+  FL K MN 
Sbjct: 4   KLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNH 63
Query: 70  KPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDAL 129
            P  G  HFRAP++I WR +RGM+PHKT            +EG+P PYD+ K+ V+ DAL
Sbjct: 64  NPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDAL 123
Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVK 185
           KV RL+     C LG LS+ VGW     I++LE+KR+ RA+  ++++ + A  R K
Sbjct: 124 KVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARAKTYHDKKVKQADARKK 179

>pdb|3JYW|M Chain M, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 178

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 100/141 (70%)
Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           VV+D + H++GRLASV+AK+LLNGQK+VVVR EE+ ISG   R K+KY  FLRK      
Sbjct: 1   VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 60
Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
           + GP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+V
Sbjct: 61  TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 120
Query: 132 LRLQKGHKYCLLGRLSSEVGW 152
           LRL+ G KY  LG+LS+ VGW
Sbjct: 121 LRLKPGRKYTTLGKLSTSVGW 141

>pdb|1S1I|M Chain M, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 146

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 100/141 (70%)
Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           VV+D + H++GRLASV+AK+LLNGQK+VVVR EE+ ISG   R K+KY  FLRK      
Sbjct: 6   VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 65
Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
           + GP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+V
Sbjct: 66  TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 125
Query: 132 LRLQKGHKYCLLGRLSSEVGW 152
           LRL+ G KY  LG+LS+ VGW
Sbjct: 126 LRLKPGRKYTTLGKLSTSVGW 146

>pdb|3ZF7|O Chain O, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 222

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 111/184 (60%), Gaps = 4/184 (2%)
Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           +V+D + H+LGR A+++AK+LL G+K+ VVRCE++ I+G  +R K+KY++FLRKR  + P
Sbjct: 25  IVIDLKDHVLGRAAAIVAKQLLLGKKITVVRCEKLTIAGSEIRNKIKYLQFLRKRKLSNP 84
Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKT-KRMVIPDALK 130
             GP H R+P+ +  RT+R M+P  T            YEGVP    +T  R+VIP A +
Sbjct: 85  KLGPFHHRSPSDVFIRTVRSMLPRYTKRGQRALRQLVAYEGVPVNVVRTGGRVVIPKAQR 144
Query: 131 VLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAA 190
               +   ++ +LG +   VGW Y D +++LE  R E++       K++ K+RV  + A 
Sbjct: 145 HNCYRNERRFTVLGNMCKHVGWKYSDVVEKLEAARIEKSG---RHHKKMEKVRVAWKNAR 201
Query: 191 EERL 194
           +E L
Sbjct: 202 KEAL 205

>pdb|3G4S|J Chain J, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 142

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           V+VDAR  ++GR+AS +A++ L+G+ V VV  E   I+G   +   KY     KR++   
Sbjct: 7   VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIGN 62
Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
            +G  + + P  I  RTIRGM+PHK             Y G   PYD+   ++  D   +
Sbjct: 63  DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVL--DGTSL 118
Query: 132 LRLQKGHKYCLLGRLSSEVGWN 153
            RL    K+  LG +S  +G N
Sbjct: 119 DRLSN-IKFVTLGEISETLGAN 139

>pdb|1FFK|G Chain G, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 145

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           V+VDAR  ++GR+AS +A++ L+G+ V VV  E   I+G   +   KY     KR++   
Sbjct: 10  VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIGN 65
Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKV 131
            +G  + + P  I  RTIRGM+PHK             Y G   PYD+   ++  D   +
Sbjct: 66  DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVL--DGTSL 121
Query: 132 LRLQKGHKYCLLGRLSSEVGWN 153
            RL    K+  LG +S  +G N
Sbjct: 122 DRLSN-IKFVTLGEISETLGAN 142

>pdb|3J21|I Chain I, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 142

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 13  VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPS 72
           +++A   +LGRLAS +AK LL G++VV+V  E+  I+G       KY +    R  T P 
Sbjct: 3   IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPR 62
Query: 73  HGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVL 132
            GP + +   +I+ RTIRGM+P KT            Y G+P  +   +   I +A  V 
Sbjct: 63  RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVS 121
Query: 133 RLQKGHKYCLLGRLSSEVGWNY 154
           RL +  KY  +G ++  +G  +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142

>pdb|1J3A|A Chain A, Crystal Structure Of Ribosomal Protein L13 From Pyrococcus Horikoshii Length = 142

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 13  VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPS 72
           +++A   +LGRLAS +AK LL G++VV+V  E+  I+G       KY +    R  T P 
Sbjct: 3   IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 73  HGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVL 132
            GP + +   +I+ RTIRGM+P KT            Y G+P  +   +   I +A  V 
Sbjct: 63  RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVS 121
Query: 133 RLQKGHKYCLLGRLSSEVGWNY 154
           RL +  KY  +G ++  +G  +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	1e-75
3jyw_M	178	60S ribosomal protein L16(A); eukaryotic ribosome,	1e-72
4a17_I	198	RPL13A, 60S ribosomal protein L13A; eukaryotic rib	4e-70
3izc_K	199	60S ribosomal protein RPL16 (L13P); eukaryotic rib	1e-67
2zkr_j	203	60S ribosomal protein L13A; protein-RNA complex, 6	7e-67
1j3a_A	142	50S ribosomal protein L13P; rRNA binding, ribosoma	1e-66
1vq8_J	145	50S ribosomal protein L13P; ribosome 50S, protein-	4e-60
2ftc_H	148	L13MT, MRP-L13, 39S ribosomal protein L13, mitocho	6e-09
3r8s_J	142	50S ribosomal protein L13; protein biosynthesis, R	3e-08
3v2d_N	140	50S ribosomal protein L13; ribosome associated inh	3e-08
3f1f_N	163	50S ribosomal protein L13; RF2, ribosome, terminat	4e-08
2zjr_G	174	50S ribosomal protein L13; ribosome, large ribosom	8e-08
3bbo_L	250	Ribosomal protein L13; large ribosomal subunit, sp	3e-07

>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_M Length = 178

 Score =  216 bits (553), Expect = 1e-72
 Identities = 89/178 (50%), Positives = 113/178 (63%)

Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
           VV+D + H++GRLASV+AK+LLNGQK+VVVR EE+ ISG   R K+KY  FLRK      
Sbjct: 1   VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 60

Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
           + GP HFRAP++I ++ +RGM+ HKT RG AAL RLK +EG+P PYDK KR+V+P AL+V
Sbjct: 61  TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 120

Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKA 189
           LRL+ G KY  LG+LS+ VGW                A  A       A     A  A
Sbjct: 121 LRLKPGRKYTTLGKLSTSVGWKAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 178

>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I Length = 198

 Score =  211 bits (538), Expect = 4e-70
 Identities = 98/200 (49%), Positives = 133/200 (66%), Gaps = 2/200 (1%)

Query: 7   ICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKR 66
           +  K VV+DA+ H+LGRLAS +AKELL+GQ++VVVR E I ISG L R ++K+  FL K 
Sbjct: 1   MFDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKW 60

Query: 67  MNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIP 126
           MN  P  G  HFRAP++I WR +RGM+PHKT +GAAAL RLK +EG+P PYD+ K+ V+ 
Sbjct: 61  MNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVV 120

Query: 127 DALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKA 186
           DALKV RL+     C LG LS+ VGW     I++LE+KR+ RA+  ++++ + A  R K 
Sbjct: 121 DALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARAKTYHDKKVKQADARKKE 180

Query: 187 EKAAEERLGPQLEIIAPIKY 206
             A    L    + +A   Y
Sbjct: 181 LAAPA--LKAIKDKLAQFGY 198

>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 203

 Score =  203 bits (517), Expect = 7e-67
 Identities = 109/193 (56%), Positives = 146/193 (75%)

Query: 10  KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
           + +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+ Y+ FLRKRMNT
Sbjct: 5   QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNT 64

Query: 70  KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
            PS GP  FRAP++I WRT+RGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P AL
Sbjct: 65  NPSRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAAL 124

Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKA 189
           KV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK 
Sbjct: 125 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKN 184

Query: 190 AEERLGPQLEIIA 202
            E+++    E++ 
Sbjct: 185 VEKKIDKYTEVLK 197

>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1 Length = 142

 Score =  200 bits (510), Expect = 1e-66
 Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 2/143 (1%)

Query: 12  VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
            +++A   +LGRLAS +AK LL G++VV+V  E+  I+G       KY +    R  T P
Sbjct: 2   RIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNP 61

Query: 72  SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
             GP + +   +I+ RTIRGM+P KT RG  A  RLK Y G+P  +   +   I +A   
Sbjct: 62  RRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVS 121

Query: 132 LRLQKGHKYCLLGRLSSEVGWNY 154
              +   KY  +G ++  +G  +
Sbjct: 122 RLSRP--KYVTVGEVAKFLGGKF 142

>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ... Length = 145

 Score =  183 bits (468), Expect = 4e-60
 Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 9/145 (6%)

Query: 10  KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
             V+VDAR  ++GR+AS +A++ L+G+ V VV  E   I+G   +   KY     KR++ 
Sbjct: 8   ADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDI 63

Query: 70  KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
              +G  + + P  I  RTIRGM+PHK +RG  A   ++ Y G   PYD+   ++   +L
Sbjct: 64  GNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVLDGTSL 121

Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNY 154
             L      K+  LG +S  +G N 
Sbjct: 122 DRL---SNIKFVTLGEISETLGANK 143

>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 148

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 25/119 (21%)

Query: 12  VVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 59
            ++D +    G+LA++ +  L              G  VV++    I  SG    QK+ Y
Sbjct: 19  YLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKV-Y 77

Query: 60  MRF------LRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEG 112
                     R+      +   +H R P  I+   I GM+P K       + RL  +  
Sbjct: 78  SSHTGYPGGFRQV-----TAAQLHLRDPVAIVKLAIYGMLP-KNLHRRTMMERLHLFPD 130

>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ... Length = 142

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 25/119 (21%)

Query: 12  VVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 59
            VVDA    LGRLA+ LA+ L              G  ++V+  +++ ++G     K+ Y
Sbjct: 16  YVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKV-Y 74

Query: 60  MRF------LRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEG 112
                    +++      +   +  R P +++   ++GM+P K   G A   +LK Y G
Sbjct: 75  YHHTGHIGGIKQA-----TFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAG 127

>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ... Length = 140

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 25/119 (21%)

Query: 12  VVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 59
           V++DA    LGRLA+ +A  L              G  VVVV  ++I ++G  + QK+ Y
Sbjct: 14  VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI-Y 72

Query: 60  MRF------LRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEG 112
            R+      L+K          +    P ++L   ++GM+P K   G     RLK Y G
Sbjct: 73  TRYSGYPGGLKKI-----PLEKMLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAG 125

>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N Length = 163

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 25/119 (21%)

Query: 12  VVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 59
           V++DA    LGRLA+ +A  L              G  VVVV  ++I ++G  + QK+ Y
Sbjct: 37  VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI-Y 95

Query: 60  MRF------LRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEG 112
            R+      L+K          +    P ++L   ++GM+P K   G     RLK Y G
Sbjct: 96  TRYSGYPGGLKKI-----PLEKMLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAG 148

>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K Length = 174

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 25/119 (21%)

Query: 12  VVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 59
           VVVDA    LGRLA+++A  +              G  VVV+   ++ ++G  +  K+ Y
Sbjct: 42  VVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKV-Y 100

Query: 60  MRF------LRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEG 112
            R+      L+       +      + P +++   + GM+P K ++G A   RLK Y G
Sbjct: 101 TRYTGYQGGLKTE-----TAREALSKHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAG 153

>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 250

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 25/119 (21%)

Query: 12  VVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 59
            VVDA   +LGR+AS +A  +              G  V+VV  +++ +SG    QK+ Y
Sbjct: 115 YVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKL-Y 173

Query: 60  MRF------LRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEG 112
            R       L++      +   +  R P +I+   +RGM+P K + G      LK Y+G
Sbjct: 174 RRHSGRPGGLKEE-----TFDQLQKRIPERIIEHAVRGMLP-KGRLGRYLFNHLKVYKG 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	100.0
4a17_I	198	RPL13A, 60S ribosomal protein L13A; eukaryotic rib	100.0
4b6a_O	199	60S ribosomal protein L16-A; large ribosomal subun	100.0
2zkr_j	203	60S ribosomal protein L13A; protein-RNA complex, 6	100.0
3jyw_M	178	60S ribosomal protein L16(A); eukaryotic ribosome,	100.0
1j3a_A	142	50S ribosomal protein L13P; rRNA binding, ribosoma	100.0
1vq8_J	145	50S ribosomal protein L13P; ribosome 50S, protein-	100.0
3r8s_J	142	50S ribosomal protein L13; protein biosynthesis, R	100.0
3v2d_N	140	50S ribosomal protein L13; ribosome associated inh	100.0
2ftc_H	148	L13MT, MRP-L13, 39S ribosomal protein L13, mitocho	100.0
3f1f_N	163	50S ribosomal protein L13; RF2, ribosome, terminat	100.0
2zjr_G	174	50S ribosomal protein L13; ribosome, large ribosom	100.0
3bbo_L	250	Ribosomal protein L13; large ribosomal subunit, sp	100.0

>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I

Probab=100.00  E-value=2e-78  Score=513.09  Aligned_cols=198  Identities=49%  Similarity=0.822  Sum_probs=193.5

Q ss_pred             ccceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHH
Q 028623            7 ICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILW   86 (206)
Q Consensus         7 ~~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~   86 (206)
                      ++++|+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|.||++|+++++++||..||+|+++|++|||
T Consensus         1 ~~~~w~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~   80 (198)
T 4a17_I            1 MFDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFW   80 (198)
T ss_dssp             CCSSCEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHH
T ss_pred             CCccEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHHHHH
Q 028623           87 RTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRK  166 (206)
Q Consensus        87 raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~~~vv~~le~krk  166 (206)
                      +||+|||||||++|+.+|+||+||+|+||||++|++|+||+|+++.+|+|+||||+|||||++|||+|++||++||++||
T Consensus        81 ~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al~v~rl~~~rk~~~lg~ls~~~Gwk~~~vv~~le~krk  160 (198)
T 4a17_I           81 RAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRR  160 (198)
T ss_dssp             HHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGBHHHHSCTTSCEEEHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHhhhhhcCCCCCeEEHHHHHHHhCchHHHHHHHHHHHHH
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028623          167 ERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY  206 (206)
Q Consensus       167 ~k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~  206 (206)
                      +++++||++|+++++++++|+++++++  +++++|++|||
T Consensus       161 ~k~~~~y~~k~~~~~~~~~a~~~~~~~--~~~~~l~~~g~  198 (198)
T 4a17_I          161 ARAKTYHDKKVKQADARKKELAAPALK--AIKDKLAQFGY  198 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSHHHH--HHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHcCC
Confidence            999999999999999999999988776  59999999998

>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.9e-76  Score=502.65  Aligned_cols=199  Identities=55%  Similarity=0.967  Sum_probs=133.7

Q ss_pred             cceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHHH
Q 028623            8 CAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWR   87 (206)
Q Consensus         8 ~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~r   87 (206)
                      .++|+||||+||+||||||+||++||.||+|||||||+|+|||+++++|+||.+|+++++++||..|++|+++|++|||+
T Consensus         3 ~r~w~VIDA~g~~LGRLAS~VAk~lL~G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~~~   82 (203)
T 2zkr_j            3 EVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFWR   82 (203)
T ss_dssp             ----CEEECTTBBHHHHHHHHHHHHHHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHHHH
T ss_pred             CccEEEEeCCCCchHHHHHHHHHHHhCCCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCCccccCChHHHHHH
Confidence            68999999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             HHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHHHHHH
Q 028623           88 TIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKE  167 (206)
Q Consensus        88 aVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~~~vv~~le~krk~  167 (206)
                      ||+||||+||++|+.+|+||+||+|+||||++|+++++|+|+++.+++|+++||||||||++|||+|+|||++||++||+
T Consensus        83 AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~v~~~~~~~ky~~lg~ls~~~Gwk~~~vv~~le~kRk~  162 (203)
T 2zkr_j           83 TVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKE  162 (203)
T ss_dssp             HHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSSSSSCCSCEEEHHHHC--------------------
T ss_pred             HHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhhhhhcCCCCceEEHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            99999998899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028623          168 RAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY  206 (206)
Q Consensus       168 k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~  206 (206)
                      ++++||++|+++++++++|++++++++++++++|+++||
T Consensus       163 k~~~~y~~kk~~~~~~~~a~~~~~~~~~~~~~~l~~~g~  201 (203)
T 2zkr_j          163 KAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL  201 (203)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCC
Confidence            999999999999999999999999999999999999998

>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=100.00  E-value=2.2e-61  Score=403.27  Aligned_cols=152  Identities=55%  Similarity=0.972  Sum_probs=147.7

Q ss_pred             EEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHHHHHhc
Q 028623           12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRG   91 (206)
Q Consensus        12 ~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~raVrG   91 (206)
                      +||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|+||++|+++++++||..|++|+++|++|||++|||
T Consensus         1 ~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r~P~~Il~~AVrG   80 (178)
T 3jyw_M            1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRG   80 (178)
T ss_dssp             CCCCCCSSCSHHHHHHHHHHHTTTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCSSTTTHHHHHTTS
T ss_pred             CEEcCCCCchHHHHHHHHHHHhCCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccCCHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             cCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcchHHHHHHHHH
Q 028623           92 MIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEK  163 (206)
Q Consensus        92 MLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~~~vv~~le~  163 (206)
                      ||||||++|+.+|+||+||+|+||||+.|+++++|+++++.+++|+++||+|||||+++||+|+++|+.--+
T Consensus        81 MLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alrv~RLkp~rKy~tLGels~~vGwk~~~~~~~~~~  152 (178)
T 3jyw_M           81 MVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKAAAAAAAAAA  152 (178)
T ss_dssp             SSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCCCCCSSSCSCCCCHHHHSSTTTCCCHHHHHTHHH
T ss_pred             HhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhhhhccCCCCceEEcchhhhhcCCcchhhHHHHHH
Confidence            999889999999999999999999999999999999999999999999999999999999999999976543

>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1

Probab=100.00  E-value=7.3e-59  Score=376.05  Aligned_cols=142  Identities=37%  Similarity=0.549  Sum_probs=124.5

Q ss_pred             EEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHHHHHh
Q 028623           11 RVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIR   90 (206)
Q Consensus        11 w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~raVr   90 (206)
                      |+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|.||+++.+..+..+|..+++++++|++|||+||+
T Consensus         1 W~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~ii~~aVr   80 (142)
T 1j3a_A            1 MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIR   80 (142)
T ss_dssp             CEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------CCCSHHHHHHHHHH
T ss_pred             CEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCccCcccccCHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999998544444444443389999999999999999


Q ss_pred             ccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcch
Q 028623           91 GMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY  154 (206)
Q Consensus        91 GMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~  154 (206)
                      |||||||++|+++|+||+||+|+||||++|+++++|.|+. .+++ ++|||+|||||++|||||
T Consensus        81 GMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~-~~~~-~~k~~~lg~ls~~~Gwk~  142 (142)
T 1j3a_A           81 GMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV-SRLS-RPKYVTVGEVAKFLGGKF  142 (142)
T ss_dssp             TTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG-GGSS-SCCEEEHHHHHHHHTCCC
T ss_pred             hhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh-hccC-CCCeEEHHHHHHHhCCCC
Confidence            9999989999999999999999999999999999999985 6775 899999999999999997

>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...

Probab=100.00  E-value=9.3e-58  Score=370.65  Aligned_cols=139  Identities=34%  Similarity=0.492  Sum_probs=131.1

Q ss_pred             CcccceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC--CCccccCch
Q 028623            5 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH--GPIHFRAPA   82 (206)
Q Consensus         5 ~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~--g~~~~r~P~   82 (206)
                      .+++++|+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|.||+      |++|||+  +++|+++|+
T Consensus         3 ~a~~~~w~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~------htg~~g~~~~~~~~r~P~   76 (145)
T 1vq8_J            3 VAEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYE------KRVDIGNDNGYFYPKRPD   76 (145)
T ss_dssp             -CCCCCSEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH------HHHHCCCSSCCCCCCSHH
T ss_pred             ccccccEEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCEeeEecchhhhheeeeE------EeCCCCCCHHHHhhcChH
Confidence            45788999999999999999999999999999999999999999999999999998      6777764  899999999


Q ss_pred             HHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcch
Q 028623           83 KILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY  154 (206)
Q Consensus        83 ~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~  154 (206)
                      +||++||+|||||||++|+++|+||+||+|+|||   |+++++|.|+. .+++ ++|||+|||||++|||||
T Consensus        77 ~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~-~~l~-~~k~~~lg~ls~~~Gwk~  143 (145)
T 1vq8_J           77 GIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL-DRLS-NIKFVTLGEISETLGANK  143 (145)
T ss_dssp             HHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC-CTTS-CCSEEEHHHHHHHHTCCC
T ss_pred             HHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh-hccC-CCCeEEHHHHHHHhCCcc
Confidence            9999999999999999999999999999999999   89999999975 6775 899999999999999998

>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...

Probab=100.00  E-value=3.6e-47  Score=307.55  Aligned_cols=118  Identities=26%  Similarity=0.439  Sum_probs=112.7

Q ss_pred             CCCCCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhccccc
Q 028623            1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMN   68 (206)
Q Consensus         1 ~~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~   68 (206)
                      |+++..+.++|+||||+||+||||||+||+.|+            |||+|||||||+|+|||+++++|.||+      |+
T Consensus         5 ~~~~~~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------ht   78 (142)
T 3r8s_J            5 TAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH------HT   78 (142)
T ss_dssp             CCCTTTCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCE------EC
T ss_pred             cCChhhccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEE------ec
Confidence            578899999999999999999999999999999            999999999999999999999999996      99


Q ss_pred             ccCCC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchh
Q 028623           69 TKPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL  129 (206)
Q Consensus        69 ~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al  129 (206)
                      +|||+      +++++++|++|||+||+|||| ||++|+.+|+||+||+|+||||++|+    |..|
T Consensus        79 gypGg~k~~~~~~~~~r~P~~ii~~aVrGMLP-kn~lgr~~l~rLkVy~G~~hph~aq~----p~~l  140 (142)
T 3r8s_J           79 GHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAAQQ----PQVL  140 (142)
T ss_dssp             SSTTCEECCBHHHHHHHCSHHHHHHHHHHHSC-SSHHHHHHHTTEEECSSSCCSCGGGC----CEEC
T ss_pred             CcCCCccccCHHHHHhhCHHHHHHHHHHhcCC-CChhHHHHHhCCEEECCCCCCcccCC----Ceec
Confidence            99986      889999999999999999999 69999999999999999999999999    7654

>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...

Probab=100.00  E-value=1.3e-46  Score=303.69  Aligned_cols=113  Identities=30%  Similarity=0.488  Sum_probs=108.7

Q ss_pred             cccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC
Q 028623            6 GICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH   73 (206)
Q Consensus         6 ~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~   73 (206)
                      .+.++|+||||+||+||||||+||+.|+            |||+|||||||+|+|||+++++|.||+      |++|||+
T Consensus         8 ~~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------htgypGg   81 (140)
T 3v2d_N            8 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG   81 (140)
T ss_dssp             CCCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEE------ECSSTTC
T ss_pred             cccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEE------ecccCCc
Confidence            7899999999999999999999999998            999999999999999999999999996      9999986


Q ss_pred             ------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchh
Q 028623           74 ------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL  129 (206)
Q Consensus        74 ------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al  129 (206)
                            +++++++|++|||+||+||||+ |++|+++|+||+||+|+||||++|+    |.+|
T Consensus        82 lk~~~~~~~~~r~P~~ii~~aVrGMLPk-~~lgr~~l~rLkVy~G~~hph~aq~----p~~~  138 (140)
T 3v2d_N           82 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQR----PEKL  138 (140)
T ss_dssp             EEEEEHHHHHHHCTHHHHHHHHHHTSCS-SHHHHHHHHTEEECSSSCCSCGGGC----CEEE
T ss_pred             ceeccHHHhhhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEeCCCCCCcccCC----Ceec
Confidence                  8999999999999999999995 9999999999999999999999999    7665

>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=2.3e-45  Score=298.83  Aligned_cols=108  Identities=25%  Similarity=0.370  Sum_probs=104.9

Q ss_pred             ccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC-
Q 028623            7 ICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH-   73 (206)
Q Consensus         7 ~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~-   73 (206)
                      |.++|+||||+||+||||||+||+.|+            |||+|||||||+|+|||+++++|.||+      |++|||+ 
T Consensus        14 ~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~------htg~pGg~   87 (148)
T 2ftc_H           14 FARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSS------HTGYPGGF   87 (148)
T ss_pred             ccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeee------eeCCcCCc
Confidence            389999999999999999999999999            999999999999999999999999997      9999986 


Q ss_pred             -----CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccc
Q 028623           74 -----GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTK  121 (206)
Q Consensus        74 -----g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k  121 (206)
                           +++++++|++|||+||+||||+ |++|+.+|+||+||+|.+|||+.|+
T Consensus        88 k~~~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkVy~G~~hP~~aq~  139 (148)
T 2ftc_H           88 RQVTAAQLHLRDPVAIVKLAIYGMLPK-NLHRRTMMERLHLFPDEYIPEDILK  139 (148)
T ss_pred             eeccHHHHhhcCHHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCChHHhC
Confidence                 8999999999999999999995 8999999999999999999999999

>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N

Probab=100.00  E-value=1e-45  Score=304.43  Aligned_cols=114  Identities=30%  Similarity=0.487  Sum_probs=108.5

Q ss_pred             cccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC
Q 028623            6 GICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH   73 (206)
Q Consensus         6 ~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~   73 (206)
                      .+.++|+||||+||+||||||+||+.|+            |||+|||||||+|+|||+++++|.||+      |++|||+
T Consensus        31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~------htgypGg  104 (163)
T 3f1f_N           31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG  104 (163)
T ss_dssp             CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECC------BCSSTTC
T ss_pred             cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEE------ecCcCCc
Confidence            7899999999999999999999999998            999999999999999999999999996      9999986


Q ss_pred             ------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhh
Q 028623           74 ------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK  130 (206)
Q Consensus        74 ------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~  130 (206)
                            +++++++|++|||+||+||||+ |++|+++|+||+||+|+||||++|+    |.+++
T Consensus       105 lk~~t~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVY~G~~hPh~aQ~----P~~l~  162 (163)
T 3f1f_N          105 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQR----PEKLE  162 (163)
T ss_dssp             BCCEEHHHHHHSSCHHHHHHHHHTTSCS-SHHHHHHHHTCEECSSSCCCCCSCC----CBCC-
T ss_pred             ceeeehHHhhhcCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCC----CeecC
Confidence                  8899999999999999999995 9999999999999999999999999    76653

>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K

Probab=100.00  E-value=1.2e-44  Score=300.87  Aligned_cols=115  Identities=27%  Similarity=0.404  Sum_probs=108.7

Q ss_pred             CCCCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccc
Q 028623            2 VSGSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT   69 (206)
Q Consensus         2 ~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~   69 (206)
                      +++  +.++|+||||+||+||||||+||+.|+            |||+|||||||+|+|||+++++|.||+      |++
T Consensus        34 ~k~--~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~------htg  105 (174)
T 2zjr_G           34 PKN--DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTR------YTG  105 (174)
T ss_dssp             CCC--SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEE------CCS
T ss_pred             cCc--ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEE------ecC
Confidence            445  889999999999999999999999999            999999999999999999999999996      999


Q ss_pred             cCCC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccC
Q 028623           70 KPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVI  125 (206)
Q Consensus        70 ~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vv  125 (206)
                      |||+      +++++++|++|||+||+||||+ |++|+++|+||+||+|+||||++|+.+++
T Consensus       106 ypGGlk~~~~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVy~G~~hph~aqkp~~l  166 (174)
T 2zjr_G          106 YQGGLKTETAREALSKHPERVIEHAVFGMLPK-GRQGRAMHTRLKVYAGETHPHSAQKPQVL  166 (174)
T ss_dssp             SCSSCCEEEESTTTTSCHHHHHHHHHGGGSCC-SHHHHHHHTTCEECSCSTGGGGSCCSCCC
T ss_pred             cCCCcccccHHHHhhcChHHHHHHHHHhcCCC-ChhHHHHHhCeEEECCCCCChhccCCeEE
Confidence            9986      8999999999999999999995 99999999999999999999999994444

>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=1.1e-44  Score=313.99  Aligned_cols=126  Identities=29%  Similarity=0.451  Sum_probs=103.8

Q ss_pred             CCCCc---ccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhccc
Q 028623            2 VSGSG---ICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKR   66 (206)
Q Consensus         2 ~~~~~---~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr   66 (206)
                      +++..   +.++|+||||+||+||||||+||+.|+            |||+|||||||+|+|||+++++|.||+      
T Consensus       102 ~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~r------  175 (250)
T 3bbo_L          102 PKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRR------  175 (250)
T ss_dssp             ----------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBC------
T ss_pred             CChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEE------
Confidence            45555   589999999999999999999999999            999999999999999999999999764      


Q ss_pred             ccccCCC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhc
Q 028623           67 MNTKPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRL  134 (206)
Q Consensus        67 ~~~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl  134 (206)
                      |++|||+      +++|+++|++|||+||+||||+ |++|+.+|+||+||+|.+|||++|+.+++|.++++.+|
T Consensus       176 HsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPk-n~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia~k~v~~  248 (250)
T 3bbo_L          176 HSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPK-GRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRV  248 (250)
T ss_dssp             CCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCS-SSSHHHHHTTCCCCSSSCCSCTTSCC------------
T ss_pred             ecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCCHHHcCCeeechhhheeec
Confidence            9999986      7899999999999999999995 99999999999999999999999999999999887766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1vqoj1	142	c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon	2e-42
d1j3aa_	142	c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyro	3e-40
d2gych1	140	c.21.1.1 (H:1-140) Ribosomal protein L13 {Escheric	5e-21
d2zjrg1	142	c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinoco	5e-21
d2j01n1	139	c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus	2e-20

>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  137 bits (347), Expect = 2e-42
 Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 9/144 (6%)

Query: 10  KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
             V+VDAR  ++GR+AS +A++ L+G+ V VV  E   I+G    ++ + +    KR++ 
Sbjct: 5   ADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG----REEQIVEKYEKRVDI 60

Query: 70  KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
              +G  + + P  I  RTIRGM+PHK +RG  A   ++ Y G   PYD+   ++   +L
Sbjct: 61  GNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVLDGTSL 118

Query: 130 KVLRLQKGHKYCLLGRLSSEVGWN 153
             L      K+  LG +S  +G N
Sbjct: 119 DRL---SNIKFVTLGEISETLGAN 139

>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  132 bits (332), Expect = 3e-40
 Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 2/142 (1%)

Query: 13  VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPS 72
           +++A   +LGRLAS +AK LL G++VV+V  E+  I+G       KY +    R  T P 
Sbjct: 3   IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62

Query: 73  HGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVL 132
            GP + +   +I+ RTIRGM+P KT RG  A  RLK Y G+P  +   +   I +A  V 
Sbjct: 63  RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVS 121

Query: 133 RLQKGHKYCLLGRLSSEVGWNY 154
           RL +  KY  +G ++  +G  +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142

>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Escherichia coli [TaxId: 562]

 Score = 82.7 bits (204), Expect = 5e-21
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 12  VVVDARHHMLGRLASVLAKELLNGQK------------VVVVRCEEICISGGLVRQKMKY 59
            VVDA    LGRLA+ LA+ L    K            ++V+  +++ ++G     K+ Y
Sbjct: 16  YVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYY 75

Query: 60  MRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
                     + +   +  R P +++   ++GM+P K   G A   +LK Y G    +  
Sbjct: 76  HHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAA 134

Query: 120 TKRMVI 125
            +  V+
Sbjct: 135 QQPQVL 140

>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 82.7 bits (204), Expect = 5e-21
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%)

Query: 12  VVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 59
           VVVDA    LGRLA+++A  +              G  VVV+   ++ ++G  +  K+  
Sbjct: 13  VVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYT 72

Query: 60  MRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
                +      +      + P +++   + GM+P K ++G A   RLK Y G   P+  
Sbjct: 73  RYTGYQGGLKTETAREALSKHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAGETHPHSA 131

Query: 120 TKRMVIPDALKVLRL 134
            K    P  LK   L
Sbjct: 132 QK----PQVLKTQPL 142

>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Thermus thermophilus [TaxId: 274]

 Score = 81.2 bits (200), Expect = 2e-20
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 13/126 (10%)

Query: 12  VVVDARHHMLGRLASVLAKELLNGQK------------VVVVRCEEICISGGLVRQKMKY 59
           V++DA    LGRLA+ +A  L    +            VVVV  ++I ++G  + QK+  
Sbjct: 14  VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 73

Query: 60  MRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
                     K     +    P ++L   ++GM+P K   G     RLK Y G   P+  
Sbjct: 74  RYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAGPDHPHQA 132

Query: 120 TKRMVI 125
            +   +
Sbjct: 133 QRPEKL 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1vqoj1	142	Ribosomal protein L13 {Archaeon Haloarcula marismo	100.0
d1j3aa_	142	Ribosomal protein L13 {Archaeon Pyrococcus horikos	100.0
d2zjrg1	142	Ribosomal protein L13 {Deinococcus radiodurans [Ta	100.0
d2j01n1	139	Ribosomal protein L13 {Thermus thermophilus [TaxId	100.0
d2gych1	140	Ribosomal protein L13 {Escherichia coli [TaxId: 56	100.0

>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3e-52  Score=335.38  Aligned_cols=136  Identities=35%  Similarity=0.514  Sum_probs=123.8

Q ss_pred             cceEEEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC--CCccccCchHHH
Q 028623            8 CAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH--GPIHFRAPAKIL   85 (206)
Q Consensus         8 ~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~--g~~~~r~P~~I~   85 (206)
                      +++|+||||+||+||||||.||+.|++||+|||||||+|.|||++++++.||+      |+++|++  ||+++++|++||
T Consensus         3 ~~k~ivIDA~~~~lGRLAs~vAk~l~~Gd~ViVvNaeki~itG~k~~~k~~y~------~~~~~g~~kg~~~~r~P~~il   76 (142)
T d1vqoj1           3 FDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYE------KRVDIGNDNGYFYPKRPDGIF   76 (142)
T ss_dssp             CCCSEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH------HHHHCCCSSCCCCCCSHHHHH
T ss_pred             ccceEEEECCCCchHHHHHHHHHHhcCCCEEEEEEChhhcccCcchhhhheee------eeecCCCccceehhcCHHHHH
Confidence            34889999999999999999999999999999999999999999999999997      6777764  999999999999


Q ss_pred             HHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcch
Q 028623           86 WRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY  154 (206)
Q Consensus        86 ~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~  154 (206)
                      ++|||||||||+.+|+.+|+||+||+|+||||++|+  ++|.++  .+++ .+|||+|||||+++||+.
T Consensus        77 ~raVrGMLP~k~~~gr~~~krLkvy~G~~h~~~~q~--~~~~~~--~~~~-~~k~v~lgels~~lGw~~  140 (142)
T d1vqoj1          77 KRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEV--LDGTSL--DRLS-NIKFVTLGEISETLGANK  140 (142)
T ss_dssp             HHHHHTTTTTTSHHHHHHHTTEEECSSCCSSSCCBC--CTTCBC--CTTT-CCSEEEHHHHHHHHTCCC
T ss_pred             HHHHhCcCCCCChhHHHHHhCcEEeCCCCCccccCc--CChhhh--hccC-CCceEEHHHHHHHhCCCC
Confidence            999999999999999999999999999999999875  445554  3454 689999999999999985

>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=6.1e-52  Score=333.59  Aligned_cols=141  Identities=38%  Similarity=0.575  Sum_probs=120.4

Q ss_pred             EEEeCCCCcchhHHHHHHHHHhCCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCCCCccccCchHHHHHHHhc
Q 028623           12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRG   91 (206)
Q Consensus        12 ~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~raVrG   91 (206)
                      -||||+|++||||||.||+.|++||+|||||||+|.|||+++.++.+|.++...+...+|..|++++++|++||++||+|
T Consensus         2 ~vIDA~g~~lGRLAs~vAk~L~~Gd~ViVvNaeki~~tG~K~~~k~~~~~~~~~g~~~~~~~~~~~~~~P~~il~~aVrG   81 (142)
T d1j3aa_           2 RIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRG   81 (142)
T ss_dssp             EEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------CCCSHHHHHHHHHHT
T ss_pred             EEEeCCCCchHHHHHHHHHHHhCCCeEEEEechhheecCcchhhhhhhhhhcccccccCcchhhhcccChHHHHHHHHHc
Confidence            58999999999999999999999999999999999999999999999984433344444445999999999999999999


Q ss_pred             cCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcch
Q 028623           92 MIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY  154 (206)
Q Consensus        92 MLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rky~~LG~Ls~~vGWk~  154 (206)
                      |||+||++|+++|+||+||+|+||||++|+..++|+| ...++. .++||+|||||.++||||
T Consensus        82 MLP~k~~lgr~~~krLkvy~G~~h~~~~q~~~~~~~a-~~~~~~-~~k~~~lgels~~~Gwk~  142 (142)
T d1j3aa_          82 MLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLS-RPKYVTVGEVAKFLGGKF  142 (142)
T ss_dssp             TTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGG-BGGGSS-SCCEEEHHHHHHHHTCCC
T ss_pred             ccCCCChHHHHHHhCCEEecCCCCChhhcCCccccHH-HHhhhc-CCceEEHHHHHHHhCcCC
Confidence            9998899999999999999999999999999999998 455664 359999999999999998

>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.2e-42  Score=279.19  Aligned_cols=116  Identities=29%  Similarity=0.441  Sum_probs=109.5

Q ss_pred             cccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccCCC
Q 028623            6 GICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH   73 (206)
Q Consensus         6 ~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P~~   73 (206)
                      ...++|+||||+|++||||||.||+.|+            |||+||||||++|.+||++|.+|.||.      |+++||+
T Consensus         7 ~~~r~W~viDA~~~~lGRlAs~iAk~L~GK~kp~y~p~~d~Gd~ViViNa~ki~~tG~K~~~k~y~~------htg~pgg   80 (142)
T d2zjrg1           7 NDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTR------YTGYQGG   80 (142)
T ss_dssp             CSCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEE------CCSSCSS
T ss_pred             CCCccEEEEECCCCchHHHHHHHHHHHhcCcccceeecccCCCEEEEcCCceeEEcCcchhhheehh------hcccccc
Confidence            4568899999999999999999999998            899999999999999999999999886      9999997


Q ss_pred             ------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccccccCCchhhhh
Q 028623           74 ------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVL  132 (206)
Q Consensus        74 ------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~  132 (206)
                            +++++++|++||++||+|||| ||.+|+.+|+||+||+|.+|||++|+    |..|++.
T Consensus        81 ~k~~~~~~~~~r~P~~ii~~aV~gMLP-kn~lgr~~lkrLkvy~G~~hp~~~q~----P~~l~~~  140 (142)
T d2zjrg1          81 LKTETAREALSKHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAGETHPHSAQK----PQVLKTQ  140 (142)
T ss_dssp             CCEEEESTTTTSCHHHHHHHHHGGGSC-CSHHHHHHHTTCEECSCSTGGGGSCC----SCCCCCC
T ss_pred             cccccHHHHhccchHHHHHHHHHhcCC-CChhHHHHHhCCeEeCCCCCCccccC----Cceeccc
Confidence                  999999999999999999999 69999999999999999999999999    8776554

>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.6e-43  Score=280.75  Aligned_cols=111  Identities=30%  Similarity=0.459  Sum_probs=105.9

Q ss_pred             CCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhcccccccC
Q 028623            4 GSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP   71 (206)
Q Consensus         4 ~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~~~P   71 (206)
                      |....++|+||||+|++||||||.||+.|+            |||+|||||||+|.+||+++.++.||.      |+++|
T Consensus         6 p~~~~r~W~viDA~~~~lGRLAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~------hsgyp   79 (139)
T d2j01n1           6 PKQVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYP   79 (139)
T ss_dssp             CCCCCCCCCEECCTTSBTTHHHHHHHHHHTTSSSSSCCTTTCCCCCCEECSCSCCBCSSCCSSSSBCCC------CCCSS
T ss_pred             cccccceEEEEeCCCCchHHHHHHHHHHHhccchheeeeccCCCceEEEechhHeeeeccccceeeeee------ecccc
Confidence            456789999999999999999999999998            899999999999999999999999886      99999


Q ss_pred             CC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccc
Q 028623           72 SH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTK  121 (206)
Q Consensus        72 ~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k  121 (206)
                      |+      +++++++|++||++||+|||| ||++|+.+|+||+||+|.+|||++|+
T Consensus        80 Gg~k~~~~~~~~~k~P~~il~~aV~gMLP-kn~lg~~~l~rLkvy~g~~hp~~aq~  134 (139)
T d2j01n1          80 GGLKKIPLEKMLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAGPDHPHQAQR  134 (139)
T ss_dssp             SCCCCCBHHHHHHSSCSHHHHHHHHTTSC-SSHHHHHHHTTCEECSSSCCTTCSCC
T ss_pred             CccccccHHHhcccCHHHHHHHHHHhcCC-CChhHHHHHhCCEEeCCCCCCcccCC
Confidence            86      678999999999999999999 69999999999999999999999999

>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-44  Score=288.16  Aligned_cols=114  Identities=25%  Similarity=0.418  Sum_probs=109.1

Q ss_pred             CCCCCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCeEEEEeccceeecCchhhhhHHHHhhhccccc
Q 028623            1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMN   68 (206)
Q Consensus         1 ~~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNae~i~iSG~k~r~K~~y~~~l~kr~~   68 (206)
                      ++++..+.++|+||||+|++||||||.||+.|+            |||+|||||||+|.+||++++++.||.      |+
T Consensus         5 ~~k~~~~~r~W~viDA~~~~lGRlAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNaeki~~tG~K~~~k~y~~------~s   78 (140)
T d2gych1           5 TAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH------HT   78 (140)
T ss_dssp             CSSSCCTTCCCCCCCCSSSCSHHHHSSSSSSSTTCSSSCCCSSSCCCCCCCCSCSSSCCCCSSCSTTCCCCC------CC
T ss_pred             cCChhHhCccEEEEeCCCCchHHHHHHHHHHHHhccCCccccccCCCcEEEEEechhhcccCchhhhhhhhc------cc
Confidence            467788999999999999999999999999998            899999999999999999999999886      99


Q ss_pred             ccCCC------CCccccCchHHHHHHHhccCCCCChhhHHHhhcCccccCCCCCccccc
Q 028623           69 TKPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTK  121 (206)
Q Consensus        69 ~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k  121 (206)
                      +|||+      +++++++|++||++||+|||| ||++|+.+|+||+||+|.||||++|+
T Consensus        79 gypgg~k~~~~~~~~~k~P~~il~~aV~gMLP-kn~lgr~~lkrLkvy~g~~hph~aQ~  136 (140)
T d2gych1          79 GHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAAQQ  136 (140)
T ss_dssp             SSCSSCCCCCCHHHHTTCSSSSTTTSSSSCSC-SSSTTSSTTTSSCCCCCCTTTTTSCC
T ss_pred             cCCCCcccccHHHHHhhHHHHHHHHHHHhcCC-CChhHHHHHhCCEEeCCCCCCccccC
Confidence            99986      888999999999999999999 69999999999999999999999999