Citrus Sinensis ID: 028637

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQIMEMKSYVVFLSQQTIYILVIYSW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEEccccccccccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEccccccEcEEEEEEcccccccccEEEEEEc
Coil and Loop (DISEMBL)
maeekestsiplsqaenggedpedpvkspptssasstrQACCYVLQSWISkkfmtgcvVLFPVAVTFFITWWFVQFVdgffsplyehlgfdifglGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISaaispdqnttafKEVAiirhprvgeyaFGFITSTVTLQIMEMKSYVVFLSQQTIYILVIYSW
Flexible Loop (DISEMBL)
maeekestsiplsqaenggedpedpvkspptssasstrQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISaaispdqntTAFKEVAIIRHPRVGEYAFGFITSTVTLQIMEMKSYVVFLSQQTIYILVIYSW
Low Complexity Region (SEG)
MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITslvfvflvgvfvsswlGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQIMEMKSYVVFLSQQTIYILVIYSW
Disordered region (IsUnstruct)
***************************************ACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQIMEMKSYVVFLSQQTIYILVIYS*
Disordered Region (DISOPRED)
***********************************************WISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISP*****AFKEVAIIRHPRVGEYAFGFITSTVTLQIMEMKSYVVFLSQQTIYILVIYSW
Disordered Region (DISEMBL)
**************************************QACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQIMEMKSYVVFLSQQTIYILVIYSW
Disordered Region (DISPRO)
**************************************QACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQIMEMKSYVVFLSQQTIYILVIYSW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQIMEMKSYVVFLSQQTIYILVIYSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
388509196	215	unknown [Lotus japonicus]	1.0	0.958	0.799	5e-90
449448444	257	PREDICTED: uncharacterized protein LOC10	0.883	0.708	0.895	1e-89
356516319	258	PREDICTED: uncharacterized protein LOC10	0.990	0.790	0.772	1e-88
357464469	258	hypothetical protein MTR_3g095210 [Medic	0.970	0.775	0.788	3e-88
388496372	258	unknown [Lotus japonicus]	0.970	0.775	0.779	7e-87
217072534	258	unknown [Medicago truncatula]	0.970	0.775	0.783	8e-87
358249218	258	uncharacterized protein LOC100792693 [Gl	0.990	0.790	0.782	3e-85
212722772	258	COV1-like protein isoform 1 [Zea mays] g	0.878	0.701	0.820	6e-85
242059357	258	hypothetical protein SORBIDRAFT_03g04101	0.878	0.701	0.831	6e-85
225438477	255	PREDICTED: uncharacterized protein LOC10	0.990	0.8	0.787	1e-84

>gi|388509196|gb|AFK42664.1| unknown [Lotus japonicus]

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 167/209 (79%), Positives = 180/209 (86%), Gaps = 3/209 (1%)

Query: 1   MAEEKESTSIPLSQAENGG--EDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCV 58
           M EEKESTSIPLSQAE+    +DPEDP KSPP S  SSTR+ACC+VLQSW SKKFMTGCV
Sbjct: 1   MPEEKESTSIPLSQAEDNASCDDPEDPAKSPPNSPNSSTRRACCFVLQSWFSKKFMTGCV 60

Query: 59  VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGST 118
           VLFPVAVTFFITWWF+QFVDGFFSP+Y  LG DIFGLGFITSL FVFL+GVFVSSW+G T
Sbjct: 61  VLFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDIFGLGFITSLAFVFLIGVFVSSWIGGT 120

Query: 119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITST 178
           VFW+GEWFIK+MP VRH+YSASKQISAAISPDQNTTAFK VAIIRHPRVGEYAFGFITST
Sbjct: 121 VFWIGEWFIKQMPLVRHIYSASKQISAAISPDQNTTAFKGVAIIRHPRVGEYAFGFITST 180

Query: 179 VTLQI-MEMKSYVVFLSQQTIYILVIYSW 206
           V LQ   E +     LSQ+TI ILVIY W
Sbjct: 181 VILQKENEDEELCSVLSQRTICILVIYFW 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448444|ref|XP_004141976.1| PREDICTED: uncharacterized protein LOC101210357 [Cucumis sativus] gi|449497697|ref|XP_004160483.1| PREDICTED: uncharacterized LOC101210357 [Cucumis sativus]

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/182 (89%), Positives = 176/182 (96%)

Query: 1   MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVL 60
           MAEEKESTS+PLSQ +NGG+DPEDPVKSPP+S  SSTR+ACCYVLQSW+SKKFMTGCVVL
Sbjct: 1   MAEEKESTSVPLSQVDNGGQDPEDPVKSPPSSPNSSTRKACCYVLQSWVSKKFMTGCVVL 60

Query: 61  FPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVF 120
           FPVAVTFF+TWWF+QFVDGFFSPLYE LG DIFGLGFITSL+FVF VG+FVSSWLGST+F
Sbjct: 61  FPVAVTFFVTWWFIQFVDGFFSPLYERLGVDIFGLGFITSLLFVFFVGIFVSSWLGSTLF 120

Query: 121 WVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVT 180
           W+GEWFI+RMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVT
Sbjct: 121 WLGEWFIQRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVT 180

Query: 181 LQ 182
           LQ
Sbjct: 181 LQ 182

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516319|ref|XP_003526843.1| PREDICTED: uncharacterized protein LOC100801920 [Glycine max]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/207 (77%), Positives = 179/207 (86%), Gaps = 3/207 (1%)

Query: 1   MAEEKESTSIPLSQAENGG-EDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVV 59
           MAEEKESTSIPLSQ +N   +DPEDP KSP +S  SSTR+ACC+VLQSW+SKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQGDNASRDDPEDPAKSPLSSPNSSTRRACCFVLQSWVSKKFMTGCVV 60

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119
           LFPVAVTFFITWWF+QFVDGFFSP+Y  LG D+FGLGF+TSL FVFL+GVFVSSW+G+TV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDVFGLGFVTSLAFVFLIGVFVSSWMGATV 120

Query: 120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 179
           FW+GEWFIKRMP VRH+YSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV
Sbjct: 121 FWIGEWFIKRMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 180 TLQIMEMKSYV--VFLSQQTIYILVIY 204
           TLQ       +  VF+    +YI  I+
Sbjct: 181 TLQKDNEDEELCSVFVPTNHLYIGDIF 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464469|ref|XP_003602516.1| hypothetical protein MTR_3g095210 [Medicago truncatula] gi|355491564|gb|AES72767.1| hypothetical protein MTR_3g095210 [Medicago truncatula] gi|388521451|gb|AFK48787.1| unknown [Medicago truncatula]

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 160/203 (78%), Positives = 177/203 (87%), Gaps = 3/203 (1%)

Query: 1   MAEEKESTSIPLSQAEN-GGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVV 59
           MAEEKESTSIPLSQA+N   EDPEDP K+PPTS  SSTR+ACC+VLQSW+SKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQADNVSCEDPEDPAKTPPTSPNSSTRRACCFVLQSWVSKKFMTGCVV 60

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119
           LFPVAVTFFITWWF+QFVDGFFSPLY   G +IFGLGFITSL FVF++GVFVSSW+G+TV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYSSFGVEIFGLGFITSLAFVFVIGVFVSSWMGATV 120

Query: 120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 179
           FW+GEW IK+MP VRH+YSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV
Sbjct: 121 FWIGEWLIKQMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 180 TLQIMEMKSYV--VFLSQQTIYI 200
           TLQ       +  VF+    +YI
Sbjct: 181 TLQKENEDEELCSVFIPTNHLYI 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496372|gb|AFK36252.1| unknown [Lotus japonicus]

 Score =  325 bits (833), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 173/204 (84%), Gaps = 4/204 (1%)

Query: 1   MAEEKESTSIPLSQAENGG--EDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCV 58
           M EEKESTSIPLSQAE+    +DPEDP KSPP S  SSTR+ACC+VLQSW SKKFMTGCV
Sbjct: 1   MPEEKESTSIPLSQAEDNASCDDPEDPAKSPPNSPNSSTRRACCFVLQSWFSKKFMTGCV 60

Query: 59  VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGST 118
           VLFPVAVTFFITWWF+QFVDGFFSP+Y  LG DIFGLGFITSL FVFL+GVFVSSW+G T
Sbjct: 61  VLFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDIFGLGFITSLSFVFLIGVFVSSWIGGT 120

Query: 119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITST 178
           VFW+GEWFIK+MP VRH+YSASKQISAAISPDQNTT FKEVAIIRHPRVGEYAFGFITST
Sbjct: 121 VFWIGEWFIKQMPLVRHIYSASKQISAAISPDQNTTVFKEVAIIRHPRVGEYAFGFITST 180

Query: 179 VTLQIMEMKSYV--VFLSQQTIYI 200
           V LQ       +  VF+    +YI
Sbjct: 181 VILQKENEDEELCSVFVPTNHLYI 204

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072534|gb|ACJ84627.1| unknown [Medicago truncatula]

 Score =  325 bits (832), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 159/203 (78%), Positives = 176/203 (86%), Gaps = 3/203 (1%)

Query: 1   MAEEKESTSIPLSQAEN-GGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVV 59
           MAEEKESTSIPLSQA+N   EDPEDP K+PPTS  SSTR+AC +VLQSW+SKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQADNVSCEDPEDPAKTPPTSPNSSTRRACRFVLQSWVSKKFMTGCVV 60

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119
           LFPVAVTFFITWWF+QFVDGFFSPLY   G +IFGLGFITSL FVF++GVFVSSW+G+TV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYSSFGVEIFGLGFITSLAFVFVIGVFVSSWMGATV 120

Query: 120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 179
           FW+GEW IK+MP VRH+YSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV
Sbjct: 121 FWIGEWLIKQMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 180 TLQIMEMKSYV--VFLSQQTIYI 200
           TLQ       +  VF+    +YI
Sbjct: 181 TLQKENEDEELCSVFIPTNHLYI 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249218|ref|NP_001240268.1| uncharacterized protein LOC100792693 [Glycine max] gi|255640177|gb|ACU20379.1| unknown [Glycine max]

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 162/207 (78%), Positives = 179/207 (86%), Gaps = 3/207 (1%)

Query: 1   MAEEKESTSIPLSQAENGG-EDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVV 59
           MAEEKESTSIPLSQ EN   +DPEDP KSPP+S  SSTR+ACC+VLQSW+SKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQGENASRDDPEDPAKSPPSSPNSSTRKACCFVLQSWVSKKFMTGCVV 60

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119
           LFPVAVTFFITWWF+QFVDGFFSP+Y  LG D+FGLGFITSL FVFL+GVFVSSW+G+TV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDVFGLGFITSLAFVFLIGVFVSSWMGATV 120

Query: 120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 179
           FW+GEWFIKRMP VRH+YSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV
Sbjct: 121 FWIGEWFIKRMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 180 TLQIMEMKSYV--VFLSQQTIYILVIY 204
            LQ       +  VF+    +YI  I+
Sbjct: 181 ILQKDNEDEELCSVFVPTNHLYIGDIF 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212722772|ref|NP_001131970.1| COV1-like protein isoform 1 [Zea mays] gi|194693066|gb|ACF80617.1| unknown [Zea mays] gi|194693894|gb|ACF81031.1| unknown [Zea mays] gi|195647116|gb|ACG43026.1| COV1-like protein [Zea mays] gi|414879522|tpg|DAA56653.1| TPA: COV1-like protein isoform 1 [Zea mays] gi|414879523|tpg|DAA56654.1| TPA: COV1-like protein isoform 2 [Zea mays] gi|414879524|tpg|DAA56655.1| TPA: COV1-like protein isoform 3 [Zea mays]

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 151/184 (82%), Positives = 168/184 (91%), Gaps = 3/184 (1%)

Query: 1   MAEEKESTSIPLSQAENGGEDPEDPVKSPP--TSSASSTRQACCYVLQSWISKKFMTGCV 58
           MAEEKESTSIPLSQA     DPEDP KSPP  +S  +STR+ACC VLQSW+S+KFMTGCV
Sbjct: 1   MAEEKESTSIPLSQAAEA-VDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCV 59

Query: 59  VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGST 118
           VLFPVAVTFFITWWF+QFVDGFFSPLY  +G DIFGLGF+TS+VF+FLVG+FVSSW+GST
Sbjct: 60  VLFPVAVTFFITWWFIQFVDGFFSPLYAKIGIDIFGLGFLTSMVFIFLVGIFVSSWVGST 119

Query: 119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITST 178
           +FWVGEWFIK+MPFVRH+YSASKQ+S AISPDQNTTAFKEVAIIRHPR+GEYAFGFITST
Sbjct: 120 IFWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITST 179

Query: 179 VTLQ 182
           V LQ
Sbjct: 180 VVLQ 183

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059357|ref|XP_002458824.1| hypothetical protein SORBIDRAFT_03g041010 [Sorghum bicolor] gi|241930799|gb|EES03944.1| hypothetical protein SORBIDRAFT_03g041010 [Sorghum bicolor]

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 167/184 (90%), Gaps = 3/184 (1%)

Query: 1   MAEEKESTSIPLSQAENGGEDPEDPVKSPP--TSSASSTRQACCYVLQSWISKKFMTGCV 58
           MAEEKESTSIPLSQA     DPEDP KSPP  +S  +STR+ACC VLQSW+S+KFMTGCV
Sbjct: 1   MAEEKESTSIPLSQAAEA-VDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCV 59

Query: 59  VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGST 118
           VLFPVAVTFFITWWF+QFVDGFFSPLY   G DIFGLGF+TSLVF+FLVG+FVSSW+GST
Sbjct: 60  VLFPVAVTFFITWWFIQFVDGFFSPLYAKFGVDIFGLGFLTSLVFIFLVGLFVSSWVGST 119

Query: 119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITST 178
           +FWVGEWFIK+MPFVRHLYSASKQ+S AISPDQNTTAFKEVAIIRHPR+GEYAFGFITST
Sbjct: 120 IFWVGEWFIKKMPFVRHLYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITST 179

Query: 179 VTLQ 182
           V LQ
Sbjct: 180 VVLQ 183

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438477|ref|XP_002278185.1| PREDICTED: uncharacterized protein LOC100266324 [Vitis vinifera] gi|296082545|emb|CBI21550.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 163/207 (78%), Positives = 180/207 (86%), Gaps = 3/207 (1%)

Query: 1   MAEEKESTSIPLSQ-AENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVV 59
           MAEEKESTS+PLSQ   NGGEDPEDP K+PP S  SSTR+ACCY LQSW+SKKFMTGCVV
Sbjct: 1   MAEEKESTSVPLSQTGGNGGEDPEDPEKTPPASPNSSTRKACCYFLQSWVSKKFMTGCVV 60

Query: 60  LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTV 119
           LFPVAVTFF+TWWF+QFVDGFFSPLYE LG DIFGLGF+TSL+FVF VGVFVSSW+G+TV
Sbjct: 61  LFPVAVTFFVTWWFIQFVDGFFSPLYERLGIDIFGLGFVTSLLFVFFVGVFVSSWMGATV 120

Query: 120 FWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 179
           FW+GEWFIKRMPFV+H+YSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV
Sbjct: 121 FWLGEWFIKRMPFVKHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 180 TLQIMEMKSYV--VFLSQQTIYILVIY 204
            LQ       +  VF+    +YI  I+
Sbjct: 181 ILQKENEDEELCSVFVPTNHLYIGDIF 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2018640	261	LCV2 "AT1G43130" [Arabidopsis	0.883	0.697	0.719	5.1e-67
TAIR|locus:2061668	268	COV1 "AT2G20120" [Arabidopsis	0.970	0.746	0.521	4.9e-53
TAIR|locus:2061654	256	LCV1 "AT2G20130" [Arabidopsis	0.970	0.781	0.533	1.3e-52
UNIPROTKB|Q5LRR3	224	SPO2062 "Uncharacterized prote	0.640	0.589	0.307	3e-14
TIGR_CMR|SPO_2062	224	SPO_2062 "conserved hypothetic	0.640	0.589	0.307	3e-14
UNIPROTKB|Q3AEZ4	211	CHY_0429 "Putative uncharacter	0.587	0.573	0.335	3.4e-13
TIGR_CMR|CHY_0429	211	CHY_0429 "conserved hypothetic	0.587	0.573	0.335	3.4e-13
UNIPROTKB|Q3Z7T7	214	DET0989 "Putative uncharacteri	0.684	0.658	0.243	4.5e-11
TIGR_CMR|DET_0989	214	DET_0989 "conserved hypothetic	0.684	0.658	0.243	4.5e-11
UNIPROTKB|Q0C0Q5	237	HNE_1988 "Putative uncharacter	0.640	0.556	0.263	1.3e-10

TAIR|locus:2018640 LCV2 "AT1G43130" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 131/182 (71%), Positives = 146/182 (80%)

Query:     1 MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQACCYVLQSWISKKFMTGCVVL 60
             MAE KE+T+  LSQ     +DP+D  KSPP S  SSTR+AC  VLQSW+SKKFMTG VVL
Sbjct:     1 MAEGKEATTSSLSQGLTPHQDPDDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVVL 60

Query:    61 FPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITXXXXXXXXXXXXXXXXGSTVF 120
             FPVAVTF ITWWF+QFVDGFFSP+YE+LG DIFGLGFIT                GSTVF
Sbjct:    61 FPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTVF 120

Query:   121 WVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVT 180
             W+GE FI+RMPFV+H+YSASKQIS AISPDQNTTAFKEVAIIRHPR+GEYAFGFITS+VT
Sbjct:   121 WLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSVT 180

Query:   181 LQ 182
             LQ
Sbjct:   181 LQ 182

GO:0003674 "molecular_function" evidence=ND

GO:0010222 "stem vascular tissue pattern formation" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2061668 COV1 "AT2G20120" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 108/207 (52%), Positives = 137/207 (66%)

Query:     1 MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASST-----RQACCYVLQSWISKKFMT 55
             MA  +    + +  A++G +D     K   +SSASS+      +     ++ W SKKFMT
Sbjct:    10 MANRERDRELLIPVADSGDKDDGSSSKPSSSSSASSSSHQSSHETLSLFIRGWASKKFMT 69

Query:    56 GCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITXXXXXXXXXXXXXXXX 115
             GCV+L P+A+TF+ITWWF+ FVDGFFSP+Y  LG ++FG GF+T                
Sbjct:    70 GCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINVFGFGFLTSIAFIFLVGVFMSSWL 129

Query:   116 GSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFI 175
             G++V  +GEWFIKRMPFVRH+Y+ASKQIS AISPDQNT AFKEVAIIRHPRVGEYAFGFI
Sbjct:   130 GASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGFI 189

Query:   176 TSTVTLQIM--EMKSYVVFLSQQTIYI 200
             TSTV LQ    E +   V++    +YI
Sbjct:   190 TSTVVLQNYPTEEELCCVYVPTNHLYI 216

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009734 "auxin mediated signaling pathway" evidence=IGI

GO:0010222 "stem vascular tissue pattern formation" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2061654 LCV1 "AT2G20130" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 110/206 (53%), Positives = 136/206 (66%)

Query:     1 MAEEKESTSIPLSQAENGGEDPEDPVKSPPTSSASSTRQA----CCYVLQSWISKKFMTG 56
             MA  +    + +  A+ G +D     K   +SSASS+ Q+        ++ W SKKFMTG
Sbjct:     1 MANRERDRELLIPVADFGDKDDGSSSKPSSSSSASSSHQSGHETLSLFIRGWASKKFMTG 60

Query:    57 CVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITXXXXXXXXXXXXXXXXG 116
             CV+L P+AVTF+ TWWF+ FVDGFFSP+Y  LG +IFG GF+T                G
Sbjct:    61 CVILLPIAVTFYTTWWFIHFVDGFFSPIYALLGINIFGFGFLTSIAFIFLVGVFMSSWLG 120

Query:   117 STVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFIT 176
             ++V  +GEWFIKRMPFVRH+Y+ASKQIS AISPDQNT AFKEVAIIRHPRVGEYAFGFIT
Sbjct:   121 ASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGFIT 180

Query:   177 STVTLQIM--EMKSYVVFLSQQTIYI 200
             STV LQ    E +   V++    +YI
Sbjct:   181 STVVLQNYPTEEELCCVYVPTNHLYI 206

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q5LRR3 SPO2062 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 43/140 (30%), Positives = 71/140 (50%)

Query:    53 FMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEH-------LGFDIFGLGFITXXXXXX 105
             F+TG VV+ PV +T ++ W  V +VD F  PL  H       +G ++ G+G I       
Sbjct:    24 FLTGIVVIAPVGLTIWLFWSVVGWVDSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTI 83

Query:   106 XXXXXXXXXXGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHP 165
                       G ++    E  + RMP VR +YS  KQIS  +   Q   +F++  +I++P
Sbjct:    84 VVGWIAKGIIGRSLIQYAEGVVDRMPVVRSVYSGIKQISETVFA-QTERSFEQACLIQYP 142

Query:   166 RVGEYAFGFITSTVTLQIME 185
             R G +A GF+++T   ++ +
Sbjct:   143 RRGIWAIGFVSTTAKGEVAD 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2062 SPO_2062 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 43/140 (30%), Positives = 71/140 (50%)

Query:    53 FMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEH-------LGFDIFGLGFITXXXXXX 105
             F+TG VV+ PV +T ++ W  V +VD F  PL  H       +G ++ G+G I       
Sbjct:    24 FLTGIVVIAPVGLTIWLFWSVVGWVDSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTI 83

Query:   106 XXXXXXXXXXGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHP 165
                       G ++    E  + RMP VR +YS  KQIS  +   Q   +F++  +I++P
Sbjct:    84 VVGWIAKGIIGRSLIQYAEGVVDRMPVVRSVYSGIKQISETVFA-QTERSFEQACLIQYP 142

Query:   166 RVGEYAFGFITSTVTLQIME 185
             R G +A GF+++T   ++ +
Sbjct:   143 RRGIWAIGFVSTTAKGEVAD 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AEZ4 CHY_0429 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 44/131 (33%), Positives = 64/131 (48%)

Query:    53 FMTGCVVLFPVAVTFFITWWFVQFVD----GFFSPLYEHLGFDIFGLGFITXXXXXXXXX 108
             F+TG  V+ P A+T +I +    F D    GFF+ ++   G DI GLG +T         
Sbjct:    18 FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIF---GIDIPGLGVLTVALLVPIVG 74

Query:   109 XXXXXXXGSTVFWVGEWFIKRMPFVRHLYSASKQ-ISAAISPDQNTTAFKEVAIIRHPRV 167
                    G  +    E    ++P  R LY  SKQ I   + P+++  AFK V + R+P+ 
Sbjct:    75 MLATNFIGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPERD--AFKSVVLARYPKD 132

Query:   168 GEYAFGFITST 178
             G YA GFIT +
Sbjct:   133 GSYALGFITGS 143

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0429 CHY_0429 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 44/131 (33%), Positives = 64/131 (48%)

Query:    53 FMTGCVVLFPVAVTFFITWWFVQFVD----GFFSPLYEHLGFDIFGLGFITXXXXXXXXX 108
             F+TG  V+ P A+T +I +    F D    GFF+ ++   G DI GLG +T         
Sbjct:    18 FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIF---GIDIPGLGVLTVALLVPIVG 74

Query:   109 XXXXXXXGSTVFWVGEWFIKRMPFVRHLYSASKQ-ISAAISPDQNTTAFKEVAIIRHPRV 167
                    G  +    E    ++P  R LY  SKQ I   + P+++  AFK V + R+P+ 
Sbjct:    75 MLATNFIGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPERD--AFKSVVLARYPKD 132

Query:   168 GEYAFGFITST 178
             G YA GFIT +
Sbjct:   133 GSYALGFITGS 143

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z7T7 DET0989 "Putative uncharacterized protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 36/148 (24%), Positives = 66/148 (44%)

Query:    49 ISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIF--GLGFITXXXXXXX 106
             +  +F+TG   + P+     +  W    +DG   P+ E   F+ +  GLG +        
Sbjct:    12 LRNRFLTGLAFVLPIGAALGLLIWVFNIIDGLLKPVIEFF-FNWYFPGLGLLVTLVLIYL 70

Query:   107 XXXXXXXXXGSTVF-WVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHP 165
                      G  +  WV +  +K +P    +Y+++KQ+   +    N  +FKE  ++  P
Sbjct:    71 VGLILSNYFGKQILGWVDKILVK-VPIFNQVYNSAKQVIETLGVS-NKVSFKEAVMVEFP 128

Query:   166 RVGEYAFGFITSTVTLQIMEMKSYVVFL 193
             R G ++  FIT+  T    E K Y+V++
Sbjct:   129 RTGMHSLAFITNETTNSAGE-KLYLVYV 155

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0989 DET_0989 "conserved hypothetical protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 36/148 (24%), Positives = 66/148 (44%)

Query:    49 ISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIF--GLGFITXXXXXXX 106
             +  +F+TG   + P+     +  W    +DG   P+ E   F+ +  GLG +        
Sbjct:    12 LRNRFLTGLAFVLPIGAALGLLIWVFNIIDGLLKPVIEFF-FNWYFPGLGLLVTLVLIYL 70

Query:   107 XXXXXXXXXGSTVF-WVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHP 165
                      G  +  WV +  +K +P    +Y+++KQ+   +    N  +FKE  ++  P
Sbjct:    71 VGLILSNYFGKQILGWVDKILVK-VPIFNQVYNSAKQVIETLGVS-NKVSFKEAVMVEFP 128

Query:   166 RVGEYAFGFITSTVTLQIMEMKSYVVFL 193
             R G ++  FIT+  T    E K Y+V++
Sbjct:   129 RTGMHSLAFITNETTNSAGE-KLYLVYV 155

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C0Q5 HNE_1988 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 149 (57.5 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 38/144 (26%), Positives = 63/144 (43%)

Query:    45 LQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYE-------HLGFDIFGLGF 97
             L +W+  +F+ G ++  P+  TF I  + +  +D    PL         +L + + G G 
Sbjct:    22 LLAWLRARFVAGMLIALPIVATFVILEFLINLIDSRVVPLLPPSLRPETYLDYAVPGFGL 81

Query:    98 ITXXXXXXXXXXXXXXXXGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTA-- 155
             I                 G     + +  + R+P VR +YS  KQI       QN TA  
Sbjct:    82 IILILFLTLVGAVATNFLGKFFVDLTDRVLTRVPVVRSVYSVFKQIRDVF---QNNTAGQ 138

Query:   156 FKEVAIIRHPRVGEYAFGFITSTV 179
             +KEVA++ +PR G +  GF+   +
Sbjct:   139 YKEVAMVEYPREGSWVIGFVAGPI 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb03g041010.1 hypothetical protein (258 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam04367	108	pfam04367, DUF502, Protein of unknown function (DU	1e-23
COG2928	222	COG2928, COG2928, Uncharacterized conserved protei	7e-23

>gnl|CDD|218047 pfam04367, DUF502, Protein of unknown function (DUF502)

 Score = 90.2 bits (225), Expect = 1e-23
 Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 4/100 (4%)

Query: 97  FITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAF 156
            I +L+ +FLVG+   +++G  +  +GE  + R+P VR +YS+ KQ+   +  D+   +F
Sbjct: 1   LILTLLLIFLVGLLARNFIGRWLLSLGERLLNRIPLVRSIYSSVKQLVETLLGDKK-KSF 59

Query: 157 KEVAIIRHPRVGEYAFGFITSTVTLQI---MEMKSYVVFL 193
           ++V ++ +PR G +A GF+T     ++   +      VF+
Sbjct: 60  RKVVLVEYPRPGLWAIGFVTGEDGGELPERLGEDLVAVFV 99

Predicted to be an integral membrane protein. Length = 108

>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function unknown]

 Score = 91.2 bits (227), Expect = 7e-23
 Identities = 44/153 (28%), Positives = 83/153 (54%), Gaps = 11/153 (7%)

Query: 51  KKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPL-------YEHLGFDIFGLGFITSLVF 103
           K F+TG +VL P+A+T ++  W    +D F  PL         +  F+I GLG I +++ 
Sbjct: 8   KYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIIL 67

Query: 104 VFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIR 163
           +FL+G    + +G ++  +G+  ++R+P V+ +Y ++KQ+   +  DQ + +FK+V ++ 
Sbjct: 68  IFLLGFLARNMIGRSLLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQ-SGSFKQVVLVE 126

Query: 164 HPRVGEYAFGFITSTVTLQI---MEMKSYVVFL 193
            PR G +A  F+T     ++          VF+
Sbjct: 127 FPRRGIWAIAFVTGEKAGELKEKEGRPMVAVFV 159

Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
COG2928	222	Uncharacterized conserved protein [Function unknow	100.0
PF04367	108	DUF502: Protein of unknown function (DUF502); Inte	99.97
TIGR02120	399	GspF general secretion pathway protein F. This mem	89.98
PRK15350	88	type III secretion system protein SsaS; Provisiona	88.7
PRK05700	89	fliQ flagellar biosynthesis protein FliQ; Validate	88.53
TIGR01402	88	fliQ flagellar biosynthetic protein FliQ. This mod	87.8
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	86.35
PRK12772	609	bifunctional flagellar biosynthesis protein FliR/F	86.07
PRK06010	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	85.58
PRK09824	627	PTS system beta-glucoside-specific transporter sub	85.25
PRK12781	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	84.42
TIGR01403	81	fliQ_rel_III type III secretion protein, HrpO fami	82.84
COG1684	258	FliR Flagellar biosynthesis pathway, component Fli	81.59
PRK10573	399	type IV pilin biogenesis protein; Provisional	81.14
PRK11007	473	PTS system trehalose(maltose)-specific transporter	80.87
PRK09796	472	PTS system cellobiose/arbutin/salicin-specific tra	80.59
TIGR01992	462	PTS-IIBC-Tre PTS system, trehalose-specific IIBC c	80.58
PRK15333	86	type III secretion system protein SpaQ; Provisiona	80.5

>COG2928 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.9e-44  Score=307.03  Aligned_cols=158  Identities=28%  Similarity=0.595  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hccchhhhhHHHHHHHHHHHHHHHHHhhhhhH
Q 028637           46 QSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYE-------HLGFDIFGLGFITSLVFVFLVGVFVSSWLGST  118 (206)
Q Consensus        46 ~~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~~p~~~-------~lg~~~pglgili~l~li~~vG~la~~~~g~~  118 (206)
                      ++++||+|+|||++++|+++|+|+++|+++++|+++.|.+.       +++.+++++|+++++++++++|+++++.+||+
T Consensus         3 ~~~lk~~fltGLlvllPlaiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~~~~i~~lg~il~iili~l~G~l~~~~ig~~   82 (222)
T COG2928           3 AKRLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLGFLARNMIGRS   82 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhchhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            45689999999999999999999999999999999998553       23567899999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHHHhCCCCCCcCcCcEEEEEeCCCCeeEEEEEecccccc---ccCCcEEEEEecC
Q 028637          119 VFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTVTLQ---IMEMKSYVVFLSQ  195 (206)
Q Consensus       119 i~~~~e~ll~rIPvV~sIY~siKqi~~~~~~~~~~~~f~~VVlVe~P~~g~~~iGFvT~~~~~~---~~~~~~v~VFvPt  195 (206)
                      +++++|++++|||++|+||+++||+++++.++++ ++||+||+||||++|+|++||+|++...+   ..++++++||+||
T Consensus        83 l~~~~d~~L~RiPlv~~IY~s~kqi~etll~~~~-~sfk~vvlVefP~~G~~~i~fvtg~~~~e~~~~~~~~~v~VfvPT  161 (222)
T COG2928          83 LLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQS-GSFKQVVLVEFPRRGIWAIAFVTGEKAGELKEKEGRPMVAVFVPT  161 (222)
T ss_pred             HHHHHHHHHccCccHHHHHHHHHHHHHHHHhcCC-ccceeeEEEECCCCCcEEEEEeccCCCcchhcccCCceEEEEcCC
Confidence            9999999999999999999999999999998764 58999999999999999999999987433   3346999999999


Q ss_pred             CCCc-cceEE
Q 028637          196 QTIY-ILVIY  204 (206)
Q Consensus       196 sPn~-~G~~~  204 (206)
                      |||| +|++.
T Consensus       162 TPNPTsGfl~  171 (222)
T COG2928         162 TPNPTSGFLL  171 (222)
T ss_pred             CCCCCcceEE
Confidence            9999 56543

>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins

Probab=99.97  E-value=1.1e-31  Score=207.25  Aligned_cols=103  Identities=27%  Similarity=0.539  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHhCCCCCCcCcCcEEEEEeCCCCeeEEEEEe
Q 028637           97 FITSLVFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFVRHLYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFIT  176 (206)
Q Consensus        97 ili~l~li~~vG~la~~~~g~~i~~~~e~ll~rIPvV~sIY~siKqi~~~~~~~~~~~~f~~VVlVe~P~~g~~~iGFvT  176 (206)
                      +++++++|+++|+++++++|+++++++|+++.|||+||+||+++||++++|+++++ ++|++||+||||++|+|++||+|
T Consensus         1 ~l~~l~~i~~iG~l~~~~~g~~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~~~~-~~f~~vVlV~~p~~g~~~igFvT   79 (108)
T PF04367_consen    1 FLILLLLIFLIGLLARNYFGKWLLNWLERLLQRIPLVKSIYSSIKQLVESFSGDKK-KSFKKVVLVEFPRPGMYVIGFVT   79 (108)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhhccc-ccCCeEEEEEecCCCcEEEEEEe
Confidence            35688899999999999999999999999999999999999999999999999864 45999999999999999999999


Q ss_pred             cccccc---ccCCcEEEEEecCCCCcc
Q 028637          177 STVTLQ---IMEMKSYVVFLSQQTIYI  200 (206)
Q Consensus       177 ~~~~~~---~~~~~~v~VFvPtsPn~~  200 (206)
                      ++...+   ..++++++||+||||||+
T Consensus        80 ~~~~~~~~~~~~~~~v~VfvPtsPnPt  106 (108)
T PF04367_consen   80 GEDPGELPGKTGEEMVAVFVPTSPNPT  106 (108)
T ss_pred             ccCcchhhccCCCCEEEEEeCCCCCCC
Confidence            997543   234599999999999964

>TIGR02120 GspF general secretion pathway protein F

Probab=89.98  E-value=5.1  Score=36.78  Aligned_cols=22  Identities=14%  Similarity=0.102  Sum_probs=18.2

Q ss_pred             HHHHHHHHHhhcchhhHHHHHH
Q 028637          119 VFWVGEWFIKRMPFVRHLYSAS  140 (206)
Q Consensus       119 i~~~~e~ll~rIPvV~sIY~si  140 (206)
                      .-...|+++.|+|+++++|...
T Consensus       243 ~r~~~~~~l~kiP~~g~~~~~~  264 (399)
T TIGR02120       243 FRLRFDRRLLRLPVIGRLVRGL  264 (399)
T ss_pred             HHHHHHHHHhcccchHHHHHHH
Confidence            4457899999999999998754

This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.

>PRK15350 type III secretion system protein SsaS; Provisional

Probab=88.70  E-value=8.5  Score=28.95  Aligned_cols=79  Identities=13%  Similarity=0.173  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 028637           47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF  126 (206)
Q Consensus        47 ~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~l~li~~vG~la~~~~g~~i~~~~e~l  126 (206)
                      ...++.+...+.+.+|+.+.-.++..+.+.+....+=       .-.-+.++-=++.++++=++...+..+.+.++.+++
T Consensus         8 ~l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQI-------QEqTLsFvPKliav~~~l~~~gpWm~~~l~~ft~~i   80 (88)
T PRK15350          8 QFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQI-------QDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999998888887777765553310       001112221122222222233345557788899999


Q ss_pred             Hhhcch
Q 028637          127 IKRMPF  132 (206)
Q Consensus       127 l~rIPv  132 (206)
                      +.+||-
T Consensus        81 f~~i~~   86 (88)
T PRK15350         81 MLRIGE   86 (88)
T ss_pred             HHhhhh
Confidence            999883

>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated

Probab=88.53  E-value=8.8  Score=28.89  Aligned_cols=79  Identities=13%  Similarity=0.222  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 028637           47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF  126 (206)
Q Consensus        47 ~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~l~li~~vG~la~~~~g~~i~~~~e~l  126 (206)
                      ...|+.+...+.+.+|+.+.-.++.-+.+.+....+=       .-.-++++-=++.++++=++.-.+.++.+.++.+++
T Consensus         8 ~l~~~al~~~l~ls~P~l~~alvVGlvIsi~QA~TQI-------qEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i   80 (89)
T PRK05700          8 DLFREAMKVALMLAAPLLLVALVVGLVVSIFQAATQI-------NEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL   80 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4468889999999999998888887777765543310       011122222222222333334446667888999999


Q ss_pred             Hhhcch
Q 028637          127 IKRMPF  132 (206)
Q Consensus       127 l~rIPv  132 (206)
                      +++||-
T Consensus        81 f~~i~~   86 (89)
T PRK05700         81 FSNIPT   86 (89)
T ss_pred             HHHHHh
Confidence            999985

>TIGR01402 fliQ flagellar biosynthetic protein FliQ

Probab=87.80  E-value=9.8  Score=28.60  Aligned_cols=80  Identities=11%  Similarity=0.183  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 028637           47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF  126 (206)
Q Consensus        47 ~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~l~li~~vG~la~~~~g~~i~~~~e~l  126 (206)
                      ...++.+...+.+.+|+.+.-.++..+.+.+....+=       .-.-+.++-=++.++++-++.-.+.++.+.++.+++
T Consensus         8 ~l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~TQI-------qEqTLsFvPKliav~~~l~~~gpWm~~~l~~f~~~~   80 (88)
T TIGR01402         8 DLGREAIWLTLLLSAPVLLVALVVGLVISIFQAATQI-------QEQTLSFIPKIIAILLALALLGPWMLTKLLDFTREI   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467889999999999988888887777765543310       011122222222222333334445667788899999


Q ss_pred             Hhhcchh
Q 028637          127 IKRMPFV  133 (206)
Q Consensus       127 l~rIPvV  133 (206)
                      +.+||-+
T Consensus        81 f~~i~~~   87 (88)
T TIGR01402        81 FQRIPQG   87 (88)
T ss_pred             HHHhhhh
Confidence            9999853

This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=86.35  E-value=7.8  Score=32.02  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=38.7

Q ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHHHHHHHHHH
Q 028637           30 PTSSASSTRQACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGV  109 (206)
Q Consensus        30 ~~~~~~~~~~~~~~rl~~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~l~li~~vG~  109 (206)
                      .......-.+....|+++++      ++.+-+|.++-+-++...+-.+++-.        .++|--..+++-++||.+|+
T Consensus        46 ~~~~~~~IP~~Vs~RM~rRm------~~~~GiP~~lG~~~f~~~y~l~~~~~--------~dvP~~~~~~~S~~~Fg~gl  111 (153)
T PF11947_consen   46 RDEDDSAIPEVVSNRMLRRM------AVFVGIPTALGVAVFVVFYYLKSRQI--------VDVPPWAVLLVSLVFFGLGL  111 (153)
T ss_pred             ccccccccCHHHHHHHHHHH------HHHhchHHHHHHHHHHHHHHHHhccc--------cccCchHHHHHHHHHHHHHH
Confidence            44455556677777775554      56677888877666666555544422        23332223333344666666


Q ss_pred             HHHh
Q 028637          110 FVSS  113 (206)
Q Consensus       110 la~~  113 (206)
                      +.-+
T Consensus       112 lGis  115 (153)
T PF11947_consen  112 LGIS  115 (153)
T ss_pred             Hhhh
Confidence            5433

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional

Probab=86.07  E-value=19  Score=35.67  Aligned_cols=40  Identities=13%  Similarity=0.194  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028637           42 CYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF   81 (206)
Q Consensus        42 ~~rl~~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~   81 (206)
                      +..+.+.+.+.|..|+..-+|+++...++...++.++...
T Consensus       165 ~~~~~~~~~~~F~~al~lAaP~i~~lll~~~~lGllsR~a  204 (609)
T PRK12772        165 IMHVINVFIQYFYIGIKIAIPIVLIILITDLTLGLISRTV  204 (609)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4555667888999999999999999999999999888765

>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=85.58  E-value=13  Score=27.91  Aligned_cols=79  Identities=11%  Similarity=0.160  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 028637           47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF  126 (206)
Q Consensus        47 ~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~l~li~~vG~la~~~~g~~i~~~~e~l  126 (206)
                      ...++.+...+.+.+|+.+.-.++..+.+.+....+=       .-.-+.++-=++.++++=++.-.+..+.+.++.+++
T Consensus         8 ~l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~TQI-------qEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i   80 (88)
T PRK06010          8 DIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALTQI-------QEMTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLLI   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999998888887777765543310       001111221112222222223344557788899999


Q ss_pred             Hhhcch
Q 028637          127 IKRMPF  132 (206)
Q Consensus       127 l~rIPv  132 (206)
                      +.+||-
T Consensus        81 f~~i~~   86 (88)
T PRK06010         81 YSRIAG   86 (88)
T ss_pred             HHhhcc
Confidence            999883

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=85.25  E-value=8.2  Score=38.44  Aligned_cols=84  Identities=13%  Similarity=0.278  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHhhcchh-hHHH
Q 028637           60 LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSL-VFVFLVGVFVSSWLGSTVFWVGEWFIKRMPFV-RHLY  137 (206)
Q Consensus        60 llPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~l-~li~~vG~la~~~~g~~i~~~~e~ll~rIPvV-~sIY  137 (206)
                      ++|++++.|+..|+-+|++......++.  +-.|.+.+++++ +.++++|=+.. ++|..+-..++++.+.-|.+ .-|+
T Consensus       219 ViPiil~v~~~s~iEk~l~K~iP~~l~~--i~~P~ltlli~~pl~l~viGPig~-~i~~~l~~~i~~l~~~~~~i~g~i~  295 (627)
T PRK09824        219 VIPIIFSAWLCSILERRLNAWLPSAIKN--FFTPLLCLMVIVPLTFLLIGPLAT-WLSELLAAGYQWLYQAVPAFAGAVM  295 (627)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhhchHHHHHHH
Confidence            7999999999999999999987555443  234554444433 34445555543 46666666777777766643 3366


Q ss_pred             HHHHHHHHH
Q 028637          138 SASKQISAA  146 (206)
Q Consensus       138 ~siKqi~~~  146 (206)
                      ..+-+++=.
T Consensus       296 g~~~~~lV~  304 (627)
T PRK09824        296 GAFWQVFVI  304 (627)
T ss_pred             HHHHHHHHH
Confidence            666665433

>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=84.42  E-value=15  Score=27.60  Aligned_cols=79  Identities=14%  Similarity=0.210  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 028637           46 QSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEW  125 (206)
Q Consensus        46 ~~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~l~li~~vG~la~~~~g~~i~~~~e~  125 (206)
                      ....|+.+...+.+-+|+.+.-.++.-+.+.+....+=       .-.-+.++-=++.++++=++.-.+.++.+.++.++
T Consensus         7 i~~~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQI-------QEqTLsFvPKliav~~~l~~~~~wm~~~l~~ft~~   79 (88)
T PRK12781          7 LELVRAAIWTIIVASGPAVGAAMLVGIAIALLQALTQI-------QEVTLTFVPKIVVILIVMAVTGSFVGAQIYAFTEM   79 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34568889999999999988888887777765543310       00112222222222222233344556778889999


Q ss_pred             HHhhcc
Q 028637          126 FIKRMP  131 (206)
Q Consensus       126 ll~rIP  131 (206)
                      ++.+||
T Consensus        80 if~~i~   85 (88)
T PRK12781         80 VYGRIE   85 (88)
T ss_pred             HHHhhc
Confidence            999988

>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family

Probab=82.84  E-value=17  Score=26.92  Aligned_cols=77  Identities=14%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-ccchhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 028637           47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEH-LGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEW  125 (206)
Q Consensus        47 ~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~~p~~~~-lg~~~pglgili~l~li~~vG~la~~~~g~~i~~~~e~  125 (206)
                      ...++.+...+.+.+|+.+.-.++.-+.+.+....+= -+. +.+--..+  ++.+.+++..+     +..+.+.++.++
T Consensus         4 ~~~~~al~~~l~~s~P~L~~alvVGLvIsi~QA~TQI-qEqTLsFvPKli--av~~~l~~~~p-----wm~~~l~~f~~~   75 (81)
T TIGR01403         4 QLTNQALLLVLILSLPPVLVAAIVGLLVSLLQALTQL-QDQTLPFAIKLI--AVFITLMLTAG-----WLGAEILNFANQ   75 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            3467888999999999998888887777765553310 000 01111111  12223333344     444677789999


Q ss_pred             HHhhcc
Q 028637          126 FIKRMP  131 (206)
Q Consensus       126 ll~rIP  131 (206)
                      ++++||
T Consensus        76 if~~i~   81 (81)
T TIGR01403        76 IFTMIP   81 (81)
T ss_pred             HHhhCC
Confidence            998887

This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs.

>COG1684 FliR Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=81.59  E-value=27  Score=31.15  Aligned_cols=43  Identities=12%  Similarity=0.267  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028637           39 QACCYVLQSWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFF   81 (206)
Q Consensus        39 ~~~~~rl~~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~   81 (206)
                      ++.+.-+.+++...|..|+..-+|++....+++-.++.+++..
T Consensus       165 ~~~~~~l~~~l~~~F~~~l~iAlPii~~lLlvnlalGlv~R~~  207 (258)
T COG1684         165 DNAFLLLAKALSAIFLIGLRLALPIIALLLLVNLALGLLNRLA  207 (258)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3456677778899999999999999999999999999888765

>PRK10573 type IV pilin biogenesis protein; Provisional

Probab=81.14  E-value=17  Score=33.44  Aligned_cols=18  Identities=22%  Similarity=0.383  Sum_probs=15.3

Q ss_pred             HHHHHHHhhcchhhHHHH
Q 028637          121 WVGEWFIKRMPFVRHLYS  138 (206)
Q Consensus       121 ~~~e~ll~rIPvV~sIY~  138 (206)
                      ...++++.|+|+++.+|.
T Consensus       244 ~~~~~~l~~iP~~g~~~~  261 (399)
T PRK10573        244 IREQRLLLRLPLVGSLIR  261 (399)
T ss_pred             HHHHHHHhcCCeeccccc
Confidence            467899999999998776

>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional

Probab=80.87  E-value=15  Score=35.41  Aligned_cols=85  Identities=11%  Similarity=0.117  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHh-hc-chhhH
Q 028637           59 VLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVF-LVGVFVSSWLGSTVFWVGEWFIK-RM-PFVRH  135 (206)
Q Consensus        59 vllPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~l~li~-~vG~la~~~~g~~i~~~~e~ll~-rI-PvV~s  135 (206)
                      .++|++++.|+..|+-++++......++.  .-.|.+.++++..+.+ ++|=+.. +++..+-+.++++.+ .. ++-.-
T Consensus       231 sViP~Il~v~~~s~iek~l~K~~P~~l~~--i~~Plltlli~~~l~l~viGPig~-~i~~~i~~~i~~L~~~~~~~ig~~  307 (473)
T PRK11007        231 QVIPALLAGLALGFIETRLKRIVPDYLYL--VVVPVCSLILAVFLAHALIGPFGR-MIGDGVAFAVKALMTGSFAPIGAA  307 (473)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHH
Confidence            57899999999999999999986444432  2345555555544433 5665543 566666667777763 33 45566


Q ss_pred             HHHHHHHHHHH
Q 028637          136 LYSASKQISAA  146 (206)
Q Consensus       136 IY~siKqi~~~  146 (206)
                      ++..+.|+.=.
T Consensus       308 i~g~~~~~lV~  318 (473)
T PRK11007        308 LFGFLYAPLVI  318 (473)
T ss_pred             HHHHHHHHHHH
Confidence            77777775543

>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional

Probab=80.59  E-value=17  Score=34.93  Aligned_cols=85  Identities=14%  Similarity=0.164  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcc-hhhHHH
Q 028637           60 LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITS-LVFVFLVGVFVSSWLGSTVFWVGEWFIKRMP-FVRHLY  137 (206)
Q Consensus        60 llPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~-l~li~~vG~la~~~~g~~i~~~~e~ll~rIP-vV~sIY  137 (206)
                      ++|++++.|+..++-++++......++.  .-.|.+.++++ .+.++++|=+.. ++|..+...++++.+.-| +..-|+
T Consensus       221 ViPiil~v~~~s~vek~~~K~~P~~l~~--i~~P~ltlli~~pl~l~viGPig~-~i~~~i~~~i~~l~~~~~~i~g~i~  297 (472)
T PRK09796        221 VIPALVMTWCLSYIERWVDRITPAVTKN--FLKPMLIVLIAAPLAILLIGPIGI-WIGSAISALVYTIHGYLGWLSVAIM  297 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHH
Confidence            6899999999999999988877544432  22343333332 222333444332 455555566666666554 556777


Q ss_pred             HHHHHHHHHh
Q 028637          138 SASKQISAAI  147 (206)
Q Consensus       138 ~siKqi~~~~  147 (206)
                      ..+-++.=.+
T Consensus       298 g~~~~~lV~~  307 (472)
T PRK09796        298 GALWPLLVMT  307 (472)
T ss_pred             HHHHHHHHHh
Confidence            7777765443

>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component

Probab=80.58  E-value=17  Score=34.72  Aligned_cols=85  Identities=4%  Similarity=0.069  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHhhcchhh-HHH
Q 028637           60 LFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVF-LVGVFVSSWLGSTVFWVGEWFIKRMPFVR-HLY  137 (206)
Q Consensus        60 llPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~l~li~-~vG~la~~~~g~~i~~~~e~ll~rIPvV~-sIY  137 (206)
                      ++|.+++.|+..|+-++++..+...+..  +-.|.+.+++++.+.+ ++|-+.. +++..+.+.+.++.+..|.+. -+|
T Consensus       233 Vip~Il~g~i~~yiek~~~k~lP~~l~~--~~vP~lt~lv~~~l~~~vigPi~~-~i~~~i~~~~~~l~~~~~~i~g~i~  309 (462)
T TIGR01992       233 VLPALLAGYVLAVIEKWLRKRVPDAIQL--LVVPPVSLLVTGFLAHAIIGPIGR-LIGNGITSGVTALFTSAAWLGGAIF  309 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            5889999999999988888865444432  2345555554444333 3454432 456666666677777676544 488


Q ss_pred             HHHHHHHHHh
Q 028637          138 SASKQISAAI  147 (206)
Q Consensus       138 ~siKqi~~~~  147 (206)
                      ..+.++.=.+
T Consensus       310 G~l~~~lV~~  319 (462)
T TIGR01992       310 GLLYAPLVIT  319 (462)
T ss_pred             HHHHHHHHHh
Confidence            8888766543

Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.

>PRK15333 type III secretion system protein SpaQ; Provisional

Probab=80.50  E-value=22  Score=26.67  Aligned_cols=79  Identities=16%  Similarity=0.026  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 028637           47 SWISKKFMTGCVVLFPVAVTFFITWWFVQFVDGFFSPLYEHLGFDIFGLGFITSLVFVFLVGVFVSSWLGSTVFWVGEWF  126 (206)
Q Consensus        47 ~~l~~~FltGLlvllPl~lTi~Il~wl~~~vd~~~~p~~~~lg~~~pglgili~l~li~~vG~la~~~~g~~i~~~~e~l  126 (206)
                      ...++.+...+.+.+|+.+.-.++.-+.+.+....+=       .-.-+.++-=++.++++=++.-.+.++.+.++.+++
T Consensus         6 ~~~~~al~~~l~ls~P~L~valvVGlvIsi~QA~TQI-------QEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i   78 (86)
T PRK15333          6 FAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQL-------QEQTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQV   78 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888899999999988888877777765543310       001122222222222222333445567788899999


Q ss_pred             Hhhcch
Q 028637          127 IKRMPF  132 (206)
Q Consensus       127 l~rIPv  132 (206)
                      +..+|-
T Consensus        79 f~~~~~   84 (86)
T PRK15333         79 IFLALA   84 (86)
T ss_pred             HHhhhc
Confidence            988873

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00