Citrus Sinensis ID: 028650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Secondary Structure (PSIPRED)
cEEEccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHHccccccHHHccccHHHHHHHccccccccHHHHHHHHHHHHccEEEEEEccccEEEcccccccccccccccEEEEEEccccccHHccccccccccccccEEEcccccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEccccHcHEEEcccccccccccccEcEccccccccccccHHHEEEcHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHccHHHcHHHcccccHHHHHHHHccccccHHHHHHHHHHHcccEEEEEEEccEEEEEccccccccccccccEEEEEEcccccccEEEcccccccccccEEEEccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mliydglhydalaispfegapeefdqtifpvqkgrtigpaEDLALKLVKEQQRkktytdtanfTLCYGVCQIGVIGQKAIAATVasdtvkhseafigksnqdycswiqdpekwggaIELSILADYygseiaaydiqttrcdlygqcshfqekkySERVMLIYDELHYDAVAISafegapvefdqssvpvrkdrtigpaeelafetc
Flexible Loop (DISEMBL)
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEafigksnqdyCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGapvefdqssvpvrkdrtigpaeelafetc
Low Complexity Region (SEG)
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Disordered region (IsUnstruct)
*LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVE*************************
Disordered Region (DISOPRED)
MLIYDGLHYDALA***********************************KEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCS***EKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Disordered Region (DISEMBL)
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Disordered Region (DISPRO)
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q55BI3	325	Ubiquitin thioesterase OT	yes	no	0.509	0.323	0.5	2e-25
Q8CB27	343	Ubiquitin thioesterase OT	yes	no	0.5	0.300	0.452	2e-21
Q29FC9	358	Ubiquitin thioesterase OT	yes	no	0.514	0.296	0.422	7e-21
Q5VVQ6	348	Ubiquitin thioesterase OT	yes	no	0.5	0.295	0.443	3e-20
Q32Q05	343	Ubiquitin thioesterase OT	no	no	0.5	0.300	0.434	6e-20
Q567B1	301	Ubiquitin thioesterase OT	yes	no	0.684	0.468	0.371	7e-20
Q05B57	348	Ubiquitin thioesterase OT	yes	no	0.509	0.301	0.427	1e-19
Q0IH43	304	Ubiquitin thioesterase OT	N/A	no	0.5	0.338	0.434	4e-19
Q5F3A6	302	Ubiquitin thioesterase OT	yes	no	0.5	0.341	0.434	4e-19
Q9VRJ9	347	Ubiquitin thioesterase OT	yes	no	0.567	0.337	0.4	1e-18

>sp|Q55BI3|OTU1_DICDI Ubiquitin thioesterase OTU1 OS=Dictyostelium discoideum GN=yod1 PE=3 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 77/110 (70%), Gaps = 5/110 (4%)

Query: 80  IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
           IA  V SD  +++EA +GKSN+ YC+WIQ+P+ WGGAIELSIL+++Y  EIAA+DI T  
Sbjct: 158 IAQNVKSDPFEYNEAVLGKSNEGYCNWIQNPKNWGGAIELSILSNHYKVEIAAFDISTQL 217

Query: 140 CDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPV 189
              YG     +++KY+ERV LIYD +HYDA++I   +  P +FD +   V
Sbjct: 218 MYCYG-----EDRKYTERVYLIYDGIHYDALSICLTKNGPEDFDITRFSV 262

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q8CB27|OTU1_MOUSE Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=1 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 12/115 (10%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV+        ++ IA  VASD V +SEA +GK+N+DYC WI+  + WGG
Sbjct: 157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPVLYSEAILGKTNEDYCDWIRRDDTWGG 216

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
           AIE+SIL+ +Y  EI   D QT R D +G     ++  Y++RV+LIYD +HYD +
Sbjct: 217 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 266

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Able to cleave both polyubiquitin and di-ubiquitin.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q29FC9|OTU1_DROPS Ubiquitin thioesterase OTU1 OS=Drosophila pseudoobscura pseudoobscura GN=GA18292 PE=3 SV=1

 Score =  100 bits (249), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 76/123 (61%), Gaps = 17/123 (13%)

Query: 80  IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
           IA  V++DT ++++A +GKSN DYC+WIQ  + WGGAIE+SIL++YYG EI   DIQ   
Sbjct: 197 IAQEVSADTQQYNDAVLGKSNSDYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAI 256

Query: 140 CDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAE 199
            + +G     ++K +  RV L++D +HYD + +        E  Q+SVP     TI P E
Sbjct: 257 INRFG-----EDKNFGLRVFLLFDGIHYDPLYM--------ETQQNSVPA----TIFPVE 299

Query: 200 ELA 202
           E+ 
Sbjct: 300 EMG 302

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 12/115 (10%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV+        ++ IA  VASD   +SEA +GK+NQ+YC WI+  + WGG
Sbjct: 162 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 221

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
           AIE+SIL+ +Y  EI   D QT R D +G     ++  Y++RV+LIYD +HYD +
Sbjct: 222 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 271

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Able to cleave both polyubiquitin and di-ubiquitin.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 12/115 (10%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV+        ++ IA  VASD   +SEA +GK+N++YC WI+  + WGG
Sbjct: 157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDLYSEAILGKTNEEYCDWIRRDDTWGG 216

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
           AIE+SIL+ +Y  EI   D QT R D +G     ++  Y++RV+LIYD +HYD +
Sbjct: 217 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 266

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Able to cleave both polyubiquitin and di-ubiquitin.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 15/156 (9%)

Query: 22  EEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIG----- 76
           EE ++   PVQ   T GP+ ++   +   ++R     ++  FT    V + GV       
Sbjct: 77  EEKNKPKPPVQPTVTKGPSFEVTPVV---ERRVVPADNSCLFTSVNYVMEGGVYDPACAS 133

Query: 77  --QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYD 134
             +  IA  VASD   +SEA +GK+N++YC+WI+  + WGGAIE+SIL+ +Y  EI   D
Sbjct: 134 EMRGLIAQIVASDPTAYSEAVLGKTNEEYCTWIRRDDTWGGAIEVSILSKFYQCEICVVD 193

Query: 135 IQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
            QT R D +G     ++  Y++RV+LIYD +HYD +
Sbjct: 194 TQTVRVDRFG-----EDAGYTKRVLLIYDGIHYDPL 224

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 12/117 (10%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV+        ++ IA  VASD   +SEA +GK+N++YC WI+  + WGG
Sbjct: 162 FTSVYYVVEGGVLNPACAPEMRRFIAQIVASDPDFYSEAILGKTNEEYCDWIKRDDTWGG 221

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAI 172
           AIE+SIL+ +Y  EI   D QT R D +G     ++  Y++RV+LIYD +HYD + +
Sbjct: 222 AIEISILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPLHL 273

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Able to cleave both polyubiquitin and di-ubiquitin.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q0IH43|OTU1_XENLA Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=yod1 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 12/115 (10%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV         +  IA  VASD   + +A +GKSN++YCSWI+  + WGG
Sbjct: 118 FTSIYYVVEGGVYDPACALEMRSLIAEIVASDQSAYCDAVLGKSNEEYCSWIRREDTWGG 177

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
           AIE+SIL+ +Y  EI   D QT R D +G     ++  Y++RV+LIYD +HYD +
Sbjct: 178 AIEVSILSKFYQCEICVVDTQTVRIDRFG-----EDSGYTKRVLLIYDGIHYDPL 227

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5F3A6|OTU1_CHICK Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YOD1 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 12/115 (10%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV         +  IA  VASD   + EA +GK+N++YC WI+  E WGG
Sbjct: 116 FTSVYYVVEGGVYDPGCAPEMRSLIAQIVASDPEAYCEAVLGKTNREYCEWIRREETWGG 175

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAV 170
           AIE+SIL+ +Y  EI   D QT R D +G     ++  Y++RV+LIYD +HYD +
Sbjct: 176 AIEVSILSKFYQCEICVVDTQTVRIDRFG-----EDAGYTKRVLLIYDGIHYDPL 225

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9VRJ9|OTU1_DROME Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 8/125 (6%)

Query: 80  IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
           IA  VA+D   +++A +GKSN +YC+WIQ  + WGGAIE+SIL++YYG EI   DIQ   
Sbjct: 186 IAQEVAADPQSYNDAVLGKSNAEYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAI 245

Query: 140 CDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAE 199
            + +G     ++K +  RV L++D +HYD + +   E +P     +  PV +      AE
Sbjct: 246 INRFG-----EDKNFGLRVFLLFDGIHYDPLYM---ETSPSAAPATIFPVEELGVYQQAE 297

Query: 200 ELAFE 204
           +LA E
Sbjct: 298 QLANE 302

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
242060618	208	hypothetical protein SORBIDRAFT_04g00442	0.592	0.586	0.700	2e-44
224117526	208	predicted protein [Populus trichocarpa]	0.597	0.591	0.695	5e-44
357494501	208	Ubiquitin thioesterase OTU1 [Medicago tr	0.597	0.591	0.695	9e-44
388500670	184	unknown [Medicago truncatula]	0.597	0.668	0.695	1e-43
226509350	208	uncharacterized protein LOC100279494 [Ze	0.592	0.586	0.692	2e-43
351725507	208	uncharacterized protein LOC100499809 [Gl	0.597	0.591	0.687	5e-43
217072950	136	unknown [Medicago truncatula]	0.597	0.904	0.687	8e-43
255583601	208	cysteine-type peptidase, putative [Ricin	0.597	0.591	0.687	9e-43
356501525	208	PREDICTED: ubiquitin thioesterase OTU1-l	0.592	0.586	0.692	1e-42
388518653	208	unknown [Lotus japonicus]	0.587	0.581	0.690	2e-42

>gi|242060618|ref|XP_002451598.1| hypothetical protein SORBIDRAFT_04g004420 [Sorghum bicolor] gi|241931429|gb|EES04574.1| hypothetical protein SORBIDRAFT_04g004420 [Sorghum bicolor]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/127 (70%), Positives = 103/127 (81%), Gaps = 5/127 (3%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K++EAF+GK N+ YC+WI DPEKWGGAIELSIL++YYG EIAAYDIQ
Sbjct: 36  RQVIAATVASDPEKYNEAFLGKPNEAYCAWILDPEKWGGAIELSILSEYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
           TTRCDLYG     QEK YSER MLIYD LHYDA+A+S  EGAP EFDQ+  PV  +R+IG
Sbjct: 96  TTRCDLYG-----QEKNYSERAMLIYDGLHYDALAMSPAEGAPEEFDQTIFPVNHNRSIG 150

Query: 197 PAEELAF 203
           PAE LA 
Sbjct: 151 PAEGLAL 157

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117526|ref|XP_002317598.1| predicted protein [Populus trichocarpa] gi|222860663|gb|EEE98210.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 103/128 (80%), Gaps = 5/128 (3%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IA TVASD  K++EAF+GK N +YC+WI+D EKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 36  RQVIAGTVASDPEKYNEAFLGKPNGEYCNWIRDSEKWGGAIELSILADYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
           T RCDLYG     Q++KYSER MLIYD LHYDA+A+S FEGAP EFDQ+   V+KDRTIG
Sbjct: 96  TMRCDLYG-----QDRKYSERAMLIYDGLHYDALAMSPFEGAPEEFDQTIFTVQKDRTIG 150

Query: 197 PAEELAFE 204
           PAE  A  
Sbjct: 151 PAEGHALN 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494501|ref|XP_003617539.1| Ubiquitin thioesterase OTU1 [Medicago truncatula] gi|217074660|gb|ACJ85690.1| unknown [Medicago truncatula] gi|355518874|gb|AET00498.1| Ubiquitin thioesterase OTU1 [Medicago truncatula] gi|388510632|gb|AFK43382.1| unknown [Medicago truncatula]

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 102/128 (79%), Gaps = 5/128 (3%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K+SEAF+GK N  YC+WI DPEKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 36  RQVIAATVASDPEKYSEAFLGKPNSAYCNWILDPEKWGGAIELSILADYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
           TTRCDLYG     QE  YSERVMLIYD LHYDA+A+S  EGAP +FDQ+   ++K+R+IG
Sbjct: 96  TTRCDLYG-----QEGNYSERVMLIYDGLHYDALAVSPVEGAPEDFDQTIFVIQKNRSIG 150

Query: 197 PAEELAFE 204
           P E LA  
Sbjct: 151 PVEGLALN 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500670|gb|AFK38401.1| unknown [Medicago truncatula]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 102/128 (79%), Gaps = 5/128 (3%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K+SEAF+GK N  YC+WI DPEKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 12  RQVIAATVASDPEKYSEAFLGKPNSAYCNWILDPEKWGGAIELSILADYYGREIAAYDIQ 71

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
           TTRCDLYG     QE  YSERVMLIYD LHYDA+A+S  EGAP +FDQ+   ++K+R+IG
Sbjct: 72  TTRCDLYG-----QEGNYSERVMLIYDGLHYDALAVSPVEGAPEDFDQTIFVIQKNRSIG 126

Query: 197 PAEELAFE 204
           P E LA  
Sbjct: 127 PVEGLALN 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226509350|ref|NP_001145967.1| uncharacterized protein LOC100279494 [Zea mays] gi|195647914|gb|ACG43425.1| hypothetical protein [Zea mays] gi|219885153|gb|ACL52951.1| unknown [Zea mays] gi|413926491|gb|AFW66423.1| hypothetical protein ZEAMMB73_214721 [Zea mays]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/127 (69%), Positives = 100/127 (78%), Gaps = 5/127 (3%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVA D  K +E F+GK N+ YC+WI DPEKWGGAIELSIL++YYG EIAAYDIQ
Sbjct: 36  RQVIAATVAGDPEKFNEVFLGKPNEAYCAWILDPEKWGGAIELSILSEYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
           TTRCDLYG     QEK YSER MLIYD LHYDA+A+S  EGAP EFDQ+  PV  DR+IG
Sbjct: 96  TTRCDLYG-----QEKNYSERAMLIYDGLHYDALAMSPAEGAPEEFDQTIFPVNHDRSIG 150

Query: 197 PAEELAF 203
           PAE LA 
Sbjct: 151 PAEGLAL 157

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725507|ref|NP_001236327.1| uncharacterized protein LOC100499809 [Glycine max] gi|255626797|gb|ACU13743.1| unknown [Glycine max]

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 101/128 (78%), Gaps = 5/128 (3%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K+ EAF+GK N +YC+WI D EKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 36  RQVIAATVASDPQKYCEAFLGKPNTEYCNWILDSEKWGGAIELSILADYYGHEIAAYDIQ 95

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
           TTRCDLYG     QE+ YSERVMLIYD LHYDA+ +S FE AP EFDQ+   V+K+R+IG
Sbjct: 96  TTRCDLYG-----QERNYSERVMLIYDGLHYDALVMSPFEEAPEEFDQTIFAVQKNRSIG 150

Query: 197 PAEELAFE 204
           P E LA  
Sbjct: 151 PVEGLALN 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072950|gb|ACJ84835.1| unknown [Medicago truncatula]

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 102/128 (79%), Gaps = 5/128 (3%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K+SEAF+GK N  YC+WI DPEKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 12  RQVIAATVASDPEKYSEAFLGKPNSAYCNWILDPEKWGGAIELSILADYYGREIAAYDIQ 71

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
           TTRCDLYG     QE  YSERVMLIYD LHYDA+A+S  EGAP +FDQ+   ++K+R+IG
Sbjct: 72  TTRCDLYG-----QEGNYSERVMLIYDGLHYDALAVSPVEGAPEDFDQTIFVIQKNRSIG 126

Query: 197 PAEELAFE 204
           P E   F+
Sbjct: 127 PVEGACFK 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583601|ref|XP_002532556.1| cysteine-type peptidase, putative [Ricinus communis] gi|223527711|gb|EEF29817.1| cysteine-type peptidase, putative [Ricinus communis]

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 102/128 (79%), Gaps = 5/128 (3%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAA VASD  K++EAF+ K N +YC+WI D EKWGGAIELS+LADYYG EIAAYDIQ
Sbjct: 36  RQVIAAAVASDPEKYNEAFLAKPNGEYCAWILDSEKWGGAIELSVLADYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
           TTRCDLYG     Q++ YSERVMLIYD LHYDA+AIS FEGAP EFDQ+   V+KDRT+G
Sbjct: 96  TTRCDLYG-----QDRGYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFAVQKDRTVG 150

Query: 197 PAEELAFE 204
            AE LA  
Sbjct: 151 LAEGLALN 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501525|ref|XP_003519575.1| PREDICTED: ubiquitin thioesterase OTU1-like isoform 1 [Glycine max] gi|356501527|ref|XP_003519576.1| PREDICTED: ubiquitin thioesterase OTU1-like isoform 2 [Glycine max]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/127 (69%), Positives = 100/127 (78%), Gaps = 5/127 (3%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K+ EAF+GK N +YC+WI D EKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 36  RQVIAATVASDPQKYCEAFLGKPNAEYCNWILDSEKWGGAIELSILADYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
           TTRCDLYG     QE  YSERVMLIYD LHYDA+ +S FE AP EFDQ+   V+K+R+IG
Sbjct: 96  TTRCDLYG-----QESNYSERVMLIYDGLHYDALVMSPFEEAPEEFDQTIFAVQKNRSIG 150

Query: 197 PAEELAF 203
           P E LA 
Sbjct: 151 PVEGLAL 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518653|gb|AFK47388.1| unknown [Lotus japonicus]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 99/126 (78%), Gaps = 5/126 (3%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K++EAF+GK N +YC+WI D EKWGGAIELSIL DYYG EIAAYDIQ
Sbjct: 36  RQVIAATVASDPEKYNEAFLGKPNAEYCTWILDSEKWGGAIELSILVDYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
           TTRCDLYG     QE  YSERVMLIYD LHYDA+A+S  EGAP EFDQ+   V  +R+IG
Sbjct: 96  TTRCDLYG-----QESNYSERVMLIYDGLHYDALAMSPVEGAPEEFDQTIFAVENNRSIG 150

Query: 197 PAEELA 202
           P E LA
Sbjct: 151 PVEGLA 156

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2007991	208	AT1G50670 "AT1G50670" [Arabido	0.587	0.581	0.650	8.7e-40
DICTYBASE|DDB_G0271346	325	yod1 "ubiquitin thioesterase O	0.480	0.304	0.519	9.7e-25
MGI|MGI:2442596	343	Yod1 "YOD1 OTU deubiquitinatin	0.490	0.294	0.460	4.9e-21
ZFIN|ZDB-GENE-050417-217	301	yod1 "YOD1 OTU deubiquinating	0.849	0.581	0.351	2.7e-20
UNIPROTKB|E2R1N1	345	YOD1 "Uncharacterized protein"	0.490	0.292	0.451	4.4e-20
UNIPROTKB|J9P3T6	290	YOD1 "Uncharacterized protein"	0.490	0.348	0.451	4.4e-20
UNIPROTKB|Q5VVQ6	348	YOD1 "Ubiquitin thioesterase O	0.490	0.290	0.451	4.4e-20
UNIPROTKB|F1RTR7	348	YOD1 "Uncharacterized protein"	0.490	0.290	0.451	4.4e-20
RGD|1359726	343	Yod1 "YOD1 OTU deubiquinating	0.490	0.294	0.442	7.2e-20
UNIPROTKB|Q05B57	348	YOD1 "Ubiquitin thioesterase O	0.490	0.290	0.442	1.2e-19

TAIR|locus:2007991 AT1G50670 "AT1G50670" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 82/126 (65%), Positives = 100/126 (79%)

Query:    77 QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
             ++ IAA VAS+  K++EAF+GK N++YC+WI +P+KWGGAIELSILADYYG EIAAYDIQ
Sbjct:    36 RQVIAAAVASNKEKYNEAFLGKLNEEYCAWILNPDKWGGAIELSILADYYGREIAAYDIQ 95

Query:   137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
             T+RCDLYGQ      + Y ERVMLIYD LHYDA+A+S FEGA  +FD +  PV KDR+IG
Sbjct:    96 TSRCDLYGQT-----RNYDERVMLIYDGLHYDALALSPFEGAEEDFDMTIYPVGKDRSIG 150

Query:   197 PAEELA 202
               E LA
Sbjct:   151 SIEGLA 156

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0271346 yod1 "ubiquitin thioesterase OTU1" [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 54/104 (51%), Positives = 75/104 (72%)

Query:    80 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
             IA  V SD  +++EA +GKSN+ YC+WIQ+P+ WGGAIELSIL+++Y  EIAA+DI T  
Sbjct:   158 IAQNVKSDPFEYNEAVLGKSNEGYCNWIQNPKNWGGAIELSILSNHYKVEIAAFDISTQL 217

Query:   140 CDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFD 183
                YG+     ++KY+ERV LIYD +HYDA++I   +  P +FD
Sbjct:   218 MYCYGE-----DRKYTERVYLIYDGIHYDALSICLTKNGPEDFD 256

GO:0030587 "sorocarp development" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0016579 "protein deubiquitination" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

MGI|MGI:2442596 Yod1 "YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 52/113 (46%), Positives = 72/113 (63%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD V +SEA +GK+N+DYC WI+  + WGG
Sbjct:   157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPVLYSEAILGKTNEDYCDWIRRDDTWGG 216

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYD 168
             AIE+SIL+ +Y  EI   D QT R D +G+     +  Y++RV+LIYD +HYD
Sbjct:   217 AIEISILSKFYQCEICVVDTQTVRIDRFGE-----DAGYTKRVLLIYDGIHYD 264

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

ZFIN|ZDB-GENE-050417-217 yod1 "YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 66/188 (35%), Positives = 99/188 (52%)

Query:    22 EEFDQTIFPVQKGRTIGPAEDLAL---KLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQK 78
             EE ++   PVQ   T GP+ ++     + V        +T + N+ +  GV       + 
Sbjct:    77 EEKNKPKPPVQPTVTKGPSFEVTPVVERRVVPADNSCLFT-SVNYVMEGGVYDPACASEM 135

Query:    79 A--IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
                IA  VASD   +SEA +GK+N++YC+WI+  + WGGAIE+SIL+ +Y  EI   D Q
Sbjct:   136 RGLIAQIVASDPTAYSEAVLGKTNEEYCTWIRRDDTWGGAIEVSILSKFYQCEICVVDTQ 195

Query:   137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIG 196
             T R D +G+     +  Y++RV+LIYD +HYD +      G+ V   Q+      D  + 
Sbjct:   196 TVRVDRFGE-----DAGYTKRVLLIYDGIHYDPLQ-KVLPGSDVPA-QTVFSTVDDVILA 248

Query:   197 PAEELAFE 204
              A ELA E
Sbjct:   249 QALELADE 256

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|E2R1N1 YOD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 51/113 (45%), Positives = 71/113 (62%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+NQ+YC WI+  + WGG
Sbjct:   159 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 218

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYD 168
             AIE+SIL+ +Y  EI   D QT R D +G+     +  Y++RV+LIYD +HYD
Sbjct:   219 AIEISILSKFYQCEICVVDTQTVRIDRFGE-----DAGYTKRVLLIYDGIHYD 266

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|J9P3T6 YOD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 51/113 (45%), Positives = 71/113 (62%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+NQ+YC WI+  + WGG
Sbjct:   104 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 163

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYD 168
             AIE+SIL+ +Y  EI   D QT R D +G+     +  Y++RV+LIYD +HYD
Sbjct:   164 AIEISILSKFYQCEICVVDTQTVRIDRFGE-----DAGYTKRVLLIYDGIHYD 211

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q5VVQ6 YOD1 "Ubiquitin thioesterase OTU1" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 51/113 (45%), Positives = 71/113 (62%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+NQ+YC WI+  + WGG
Sbjct:   162 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 221

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYD 168
             AIE+SIL+ +Y  EI   D QT R D +G+     +  Y++RV+LIYD +HYD
Sbjct:   222 AIEISILSKFYQCEICVVDTQTVRIDRFGE-----DAGYTKRVLLIYDGIHYD 269

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0071108 "protein K48-linked deubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0070536 "protein K63-linked deubiquitination" evidence=IDA

UNIPROTKB|F1RTR7 YOD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 51/113 (45%), Positives = 71/113 (62%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+NQ+YC WI+  + WGG
Sbjct:   162 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 221

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYD 168
             AIE+SIL+ +Y  EI   D QT R D +G+     +  Y++RV+LIYD +HYD
Sbjct:   222 AIEISILSKFYQCEICVVDTQTVRIDRFGE-----DAGYTKRVLLIYDGIHYD 269

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

RGD|1359726 Yod1 "YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 50/113 (44%), Positives = 71/113 (62%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+N++YC WI+  + WGG
Sbjct:   157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDLYSEAILGKTNEEYCDWIRRDDTWGG 216

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYD 168
             AIE+SIL+ +Y  EI   D QT R D +G+     +  Y++RV+LIYD +HYD
Sbjct:   217 AIEISILSKFYQCEICVVDTQTVRIDRFGE-----DAGYTKRVLLIYDGIHYD 264

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=ISO;ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO;ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO;ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO;ISS

UNIPROTKB|Q05B57 YOD1 "Ubiquitin thioesterase OTU1" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 50/113 (44%), Positives = 71/113 (62%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+N++YC WI+  + WGG
Sbjct:   162 FTSVYYVVEGGVLNPACAPEMRRFIAQIVASDPDFYSEAILGKTNEEYCDWIKRDDTWGG 221

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKKYSERVMLIYDELHYD 168
             AIE+SIL+ +Y  EI   D QT R D +G+     +  Y++RV+LIYD +HYD
Sbjct:   222 AIEISILSKFYQCEICVVDTQTVRIDRFGE-----DAGYTKRVLLIYDGIHYD 269

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Sb04g004420.1	hypothetical protein (208 aa)
		(Sorghum bicolor)
Predicted Functional Partners:
	Sb02g001920.1	hypothetical protein (732 aa)					•	•			0.823
	Sb09g030220.1	hypothetical protein (663 aa)		•							0.636
	Sb09g030210.1	hypothetical protein (496 aa)		•							0.602

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	3e-09
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	1e-08

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 15/111 (13%)

Query: 71  QIGVIGQKAIAATVASDTVKH--------SEAFIGKSNQDYCSWIQDPEKWGGAIELSIL 122
           Q+G  G++ +   +    V++         +      N+ Y  WI     WGG IE+  L
Sbjct: 14  QLGDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYK-WISKDGAWGGNIEIFAL 72

Query: 123 ADYYGSEIAAYDIQTTRCDLYGQC-SHFQEKKYSERVMLIY-----DELHY 167
           A      I  Y +Q  R  +Y +    +        + L Y        HY
Sbjct: 73  AHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 78  KAIAAT-VASDTVKHSEAFIGKSNQDYCSWIQDPEKWG-GAIELSILADYYGSEIAAYDI 135
           + + +  V S+   ++ A +      Y +WI  P+  G G IE++I++D     I   D+
Sbjct: 141 REVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDV 200

Query: 136 QTTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFE 176
                D Y          Y +R+ +++  +H+D   ++   
Sbjct: 201 DKDSEDRYNSH------PYVQRISILFTGIHFDEETLAMVL 235

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	100.0
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.89
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.82
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.67
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.34
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.96
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	98.49
KOG3991	256	consensus Uncharacterized conserved protein [Funct	98.37
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	94.03

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-36  Score=263.01  Aligned_cols=125  Identities=46%  Similarity=0.831  Sum_probs=117.7

Q ss_pred             chhHHHHHHHHHhccccccccccCCChHHHhhhcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCCeeeeCCCccccccc
Q 028650           74 VIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEKK  153 (206)
Q Consensus        74 l~lR~~vA~~I~~np~~f~~~~L~~~~~eYc~~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~~~~~~ge~~~~~~~~  153 (206)
                      .+||+++|+.+++||+.||+||||+|+.|||.||+++++|||+|||+|||++|+++|.|+|+++.|+++|||     +++
T Consensus       139 ~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fge-----d~~  213 (307)
T KOG3288|consen  139 YELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGE-----DKN  213 (307)
T ss_pred             HHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehhhhceeEEEEecceeeehhcCC-----CCC
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999     888


Q ss_pred             CCCeEEEEecCcccccccccccCCCCCCCCeeeeeCCCCCChhHHHHHHhhh
Q 028650          154 YSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFET  205 (206)
Q Consensus       154 ~~~~i~L~Y~G~HYdsl~~~~~~~~~~~~d~t~f~~~~~~~~~~~~~~a~~l  205 (206)
                      |.+|++|+|+|+|||+|.+++.  .|.+.|.|+||.+|+.++..++++|.+|
T Consensus       214 ~~~rv~llydGIHYD~l~m~~~--~~~~~~~tifp~~dd~v~~~alqLa~~~  263 (307)
T KOG3288|consen  214 FDNRVLLLYDGIHYDPLAMNEF--KPTDVDNTIFPVSDDTVLTQALQLASEL  263 (307)
T ss_pred             CCceEEEEecccccChhhhccC--CccCCcccccccccchHHHHHHHHHHHH
Confidence            9999999999999999999876  6888999999999987777777777664

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=5.4e-24  Score=184.86  Aligned_cols=85  Identities=48%  Similarity=0.782  Sum_probs=77.5

Q ss_pred             CEeecccccceeeecCCCCCCCCCCeeeeeCCCCCccchHHHHHHHHHHHHhhcCcccccccceeeeeeccccchhHHHH
Q 028650            1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAI   80 (206)
Q Consensus         1 ~liYsGIHYD~l~l~~~~~~~~~~d~tiF~~~d~~~~~~~~~~A~~L~~~lk~~~~~Tdt~~F~LrC~~C~~~l~lR~~v   80 (206)
                      +|||||||||+|++++.  .|.+.|-|+||.+|+.+    +..|++||+++|++||||||++|+|||++|+++|.|++. 
T Consensus       219 ~llydGIHYD~l~m~~~--~~~~~~~tifp~~dd~v----~~~alqLa~~~k~~r~ytdt~~ftlRC~~Cq~glvGq~e-  291 (307)
T KOG3288|consen  219 LLLYDGIHYDPLAMNEF--KPTDVDNTIFPVSDDTV----LTQALQLASELKRTRYYTDTAKFTLRCMVCQMGLVGQKE-  291 (307)
T ss_pred             EEEecccccChhhhccC--CccCCcccccccccchH----HHHHHHHHHHHHhcceeccccceEEEeeecccceeeHHH-
Confidence            58999999999999976  56778999999999754    489999999999999999999999999999999999997 


Q ss_pred             HHHHHhcccccc
Q 028650           81 AATVASDTVKHS   92 (206)
Q Consensus        81 A~~I~~np~~f~   92 (206)
                      |..|++.++|-|
T Consensus       292 a~eHA~~TGH~n  303 (307)
T KOG3288|consen  292 AAEHAKATGHVN  303 (307)
T ss_pred             HHHHHHhcCCCc
Confidence            669999999965

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=7.2e-21  Score=168.02  Aligned_cols=94  Identities=21%  Similarity=0.366  Sum_probs=81.2

Q ss_pred             chhHHHHHHHHHhccccccccccC------CC---hHHHhhhcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCCeeeeC
Q 028650           74 VIGQKAIAATVASDTVKHSEAFIG------KS---NQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYG  144 (206)
Q Consensus        74 l~lR~~vA~~I~~np~~f~~~~L~------~~---~~eYc~~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~~~~~~g  144 (206)
                      -.||...|+|+++|.++|-|+++.      .+   |++||+.|++|+.|||+|||.|||++|++||.||+.+ +.+..||
T Consensus       190 ~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~-~p~~~~g  268 (302)
T KOG2606|consen  190 QKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD-GPILEYG  268 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC-CCceeec
Confidence            479999999999999999996652      23   9999999999999999999999999999999999986 6678999


Q ss_pred             CCcccccccCCCeEEEEec------Cccccccccc
Q 028650          145 QCSHFQEKKYSERVMLIYD------ELHYDAVAIS  173 (206)
Q Consensus       145 e~~~~~~~~~~~~i~L~Y~------G~HYdsl~~~  173 (206)
                      +     +.+..++++|+|+      |+||||+...
T Consensus       269 e-----ey~kd~pL~lvY~rH~y~LGeHYNS~~~~  298 (302)
T KOG2606|consen  269 E-----EYGKDKPLILVYHRHAYGLGEHYNSVTPL  298 (302)
T ss_pred             h-----hhCCCCCeeeehHHhHHHHHhhhcccccc
Confidence            8     3222478999995      8999999764

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=6.8e-18  Score=148.91  Aligned_cols=123  Identities=20%  Similarity=0.328  Sum_probs=101.4

Q ss_pred             chhHHHHHHHHHhccccccccccCCChHHHhhhcCCCCccc-hHHHHHHHHHHhCCeeEEEEcCCCCeeeeCCCcccccc
Q 028650           74 VIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWG-GAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK  152 (206)
Q Consensus        74 l~lR~~vA~~I~~np~~f~~~~L~~~~~eYc~~I~~~~~WG-G~iEL~aLs~~~~~~I~v~~~~~~~~~~~ge~~~~~~~  152 (206)
                      -+||.+||-.+.+||+.|++++++.|.-.||.||+++.+|| |.||+.+||+.++++|.|+|+..++.++||+     . 
T Consensus       138 ~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~-----~-  211 (306)
T COG5539         138 AKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNS-----H-  211 (306)
T ss_pred             HHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccC-----C-
Confidence            47999999999999999999999999999999999999999 9999999999999999999999889999998     3 


Q ss_pred             cCCCeEEEEecCcccccccccccCCCCCCCCeeeeeCCCCCChhHHHHHHhh
Q 028650          153 KYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFE  204 (206)
Q Consensus       153 ~~~~~i~L~Y~G~HYdsl~~~~~~~~~~~~d~t~f~~~~~~~~~~~~~~a~~  204 (206)
                      .|..++.+.|.|+|||...+...+ -....+...|+.++-.. -.++++|.-
T Consensus       212 ~~~q~~~i~f~g~hfD~~t~~m~~-~dt~~ne~~~~a~~g~~-~ei~qLas~  261 (306)
T COG5539         212 PYVQRISILFTGIHFDEETLAMVL-WDTYVNEVLFDASDGIT-IEIQQLASL  261 (306)
T ss_pred             hhhhhhhhhhcccccchhhhhcch-HHHHHhhhcccccccch-HHHHHHHHH
Confidence            367889999999999999854321 01223445565555422 456666654

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.34  E-value=1.2e-12  Score=100.43  Aligned_cols=85  Identities=24%  Similarity=0.366  Sum_probs=66.3

Q ss_pred             chhHHHHHHHHH-hccccccccccCCChHHHhhhcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCCeeee---CCCccc
Q 028650           74 VIGQKAIAATVA-SDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLY---GQCSHF  149 (206)
Q Consensus        74 l~lR~~vA~~I~-~np~~f~~~~L~~~~~eYc~~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~~~~~~---ge~~~~  149 (206)
                      .++|+.++++++ .+++.|.+.+.+.       +|+++..|||++||.|||++|+++|.||+...++...+   +..  .
T Consensus        27 ~~lR~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~--~   97 (121)
T PF02338_consen   27 QELRKAVVDYLRDKNRDKFEEFLEGD-------KMSKPGTWGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGK--Y   97 (121)
T ss_dssp             HHHHHHHHHHHHTHTTTHHHHHHHHH-------HHTSTTSHEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCE--E
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhh-------hhccccccCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCc--c
Confidence            489999999999 9999998844434       99999999999999999999999999998876653222   210  0


Q ss_pred             ccccCCCeEEEEec------Cccc
Q 028650          150 QEKKYSERVMLIYD------ELHY  167 (206)
Q Consensus       150 ~~~~~~~~i~L~Y~------G~HY  167 (206)
                      ......+.+.+.|+      |+||
T Consensus        98 ~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   98 PPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             STTTTTTSEEEEEETEEEEETTEE
T ss_pred             ccCCCCCeEEEEEcCCccCCCCCC
Confidence            01234567888887      6898

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=2.9e-10  Score=100.87  Aligned_cols=85  Identities=19%  Similarity=0.298  Sum_probs=65.2

Q ss_pred             EeecccccceeeecCCCCCCCCCCeeeeeCCCCCccchHHHHHHHHHHHHhhcCcccccccceeeeeeccccchhHHHHH
Q 028650            2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIA   81 (206)
Q Consensus         2 liYsGIHYD~l~l~~~~~~~~~~d~tiF~~~d~~~~~~~~~~A~~L~~~lk~~~~~Tdt~~F~LrC~~C~~~l~lR~~vA   81 (206)
                      ++|+|||||..++.-.+- ...++.-.|+.++-     +...+++||+-|+..+|+|||++|.+||+.|+++++|.+. +
T Consensus       219 i~f~g~hfD~~t~~m~~~-dt~~ne~~~~a~~g-----~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c~~~~~~e~~-~  291 (306)
T COG5539         219 ILFTGIHFDEETLAMVLW-DTYVNEVLFDASDG-----ITIEIQQLASLLKNPHYYTNTASPSIKCNICGTGFVGEKD-Y  291 (306)
T ss_pred             hhhcccccchhhhhcchH-HHHHhhhccccccc-----chHHHHHHHHHhcCceEEeecCCceEEeeccccccchhhH-H
Confidence            479999999998653220 01122334444442     3368999999999999999999999999999999999996 4


Q ss_pred             HHHHhccccccc
Q 028650           82 ATVASDTVKHSE   93 (206)
Q Consensus        82 ~~I~~np~~f~~   93 (206)
                      -.|+--+|||+.
T Consensus       292 ~~Ha~a~GH~n~  303 (306)
T COG5539         292 YAHALATGHYNF  303 (306)
T ss_pred             HHHHHhhcCccc
Confidence            488888999974

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.49  E-value=5.9e-07  Score=77.70  Aligned_cols=94  Identities=16%  Similarity=0.227  Sum_probs=66.7

Q ss_pred             chhHHHHHHHHHhccccccccccC---CChHHHhh-hcCCCCccchHHHHHHHHHHhCCeeEEEEcCCC---C---eeee
Q 028650           74 VIGQKAIAATVASDTVKHSEAFIG---KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTT---R---CDLY  143 (206)
Q Consensus        74 l~lR~~vA~~I~~np~~f~~~~L~---~~~~eYc~-~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~---~---~~~~  143 (206)
                      .-+|-..+.+++.|++.|.+++.+   .++++||+ .|.....=.++|.+.|||++++++|.|+-.+.+   .   ...|
T Consensus       140 ~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~  219 (244)
T PF10275_consen  140 IFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEF  219 (244)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEE
T ss_pred             HHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccC
Confidence            469988999999999999885545   78999996 666666888999999999999999999987743   1   1233


Q ss_pred             CCCcccccccCCCeEEEEecCccccccc
Q 028650          144 GQCSHFQEKKYSERVMLIYDELHYDAVA  171 (206)
Q Consensus       144 ge~~~~~~~~~~~~i~L~Y~G~HYdsl~  171 (206)
                      .+.    ..+...+|.|+|-.-|||.++
T Consensus       220 ~~~----~~~~~~~i~LLyrpgHYdIly  243 (244)
T PF10275_consen  220 PPD----NESQEPQITLLYRPGHYDILY  243 (244)
T ss_dssp             S-S----STTSS-SEEEEEETBEEEEEE
T ss_pred             CCc----cCCCCCEEEEEEcCCcccccc
Confidence            220    012246799999988999886

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=1e-06  Score=76.43  Aligned_cols=96  Identities=16%  Similarity=0.197  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHhccccccccccC-CChHHHhhhcCCCC-ccchHHHHHHHHHHhCCeeEEEEcCCCCeeeeCCCcccccc
Q 028650           75 IGQKAIAATVASDTVKHSEAFIG-KSNQDYCSWIQDPE-KWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK  152 (206)
Q Consensus        75 ~lR~~vA~~I~~np~~f~~~~L~-~~~~eYc~~I~~~~-~WGG~iEL~aLs~~~~~~I~v~~~~~~~~~~~ge~~~~~~~  152 (206)
                      -+|-..+..|++|++.|.|++-| +++.+||..-..|. .-.++|+|.|||+++++.|.|..++.+....+|.. .|. .
T Consensus       158 ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH-~fp-e  235 (256)
T KOG3991|consen  158 YLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHH-DFP-E  235 (256)
T ss_pred             HHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCC-cCc-c
Confidence            58999999999999999994444 89999999877776 77899999999999999999998876655555531 010 1


Q ss_pred             cCCCeEEEEecCcccccccc
Q 028650          153 KYSERVMLIYDELHYDAVAI  172 (206)
Q Consensus       153 ~~~~~i~L~Y~G~HYdsl~~  172 (206)
                      +...+|.|+|---|||.|+.
T Consensus       236 ~s~P~I~LLYrpGHYdilY~  255 (256)
T KOG3991|consen  236 ASAPEIYLLYRPGHYDILYK  255 (256)
T ss_pred             ccCceEEEEecCCccccccC
Confidence            23467999999999999874

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=94.03  E-value=0.061  Score=50.08  Aligned_cols=61  Identities=10%  Similarity=0.090  Sum_probs=50.4

Q ss_pred             chhHHHHHHHHHhccccccccccCCChHHHhhhcCCCCccchHHHHHHHHH---HhCCeeEEEEc
Q 028650           74 VIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILAD---YYGSEIAAYDI  135 (206)
Q Consensus        74 l~lR~~vA~~I~~np~~f~~~~L~~~~~eYc~~I~~~~~WGG~iEL~aLs~---~~~~~I~v~~~  135 (206)
                      ...|+.+.++...+++.|+. +.-+.+..|.+..+....||-+||++++|.   ....++.+-..
T Consensus       246 ~~~~~~~~dq~~~e~~~~~~-~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~  309 (371)
T KOG2605|consen  246 DHNRRECVDQLKKERDFYED-YVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSF  309 (371)
T ss_pred             HHHHHHHHHHHhhccccccc-ccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecc
Confidence            35788899999999999977 778899999999999999999999999996   44444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
3by4_A	212	Structure Of Ovarian Tumor (Otu) Domain In Complex		4e-12
3c0r_A	212	Structure Of Ovarian Tumor (Otu) Domain In Complex		9e-12

>pdb|3BY4|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With Ubiquitin Length = 212

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ ++  V ++ VK ++A + K N+DY  WI   E WGGAIE+ I++D     I   DI 
Sbjct: 50  REMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDID 109
Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFE 176
             + +       F E K+   ++++++ +HYD++ ++ F+
Sbjct: 110 AVKIE------KFNEDKFDNYILILFNGIHYDSLTMNEFK 143

>pdb|3C0R|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With Ubiquitin Length = 212

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ ++  V ++ VK ++A + K N+DY  WI   E WGGAIE+ I++D     I   DI 
Sbjct: 50  REXVSKEVLNNPVKFNDAILDKPNKDYAQWILKXESWGGAIEIGIISDALAVAIYVVDID 109
Query: 137 TTRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFE 176
             + +       F E K+   ++++++ +HYD++  + F+
Sbjct: 110 AVKIE------KFNEDKFDNYILILFNGIHYDSLTXNEFK 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	1e-23
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	3e-09
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-16
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	9e-16
3pfy_A	185	OTU domain-containing protein 5; structural genomi	6e-09

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 92.7 bits (230), Expect = 1e-23
 Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 11/127 (8%)

Query: 78  KAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQT 137
           + ++  V ++ VK ++A + K N+DY  WI   E WGGAIE+ I++D     I   DI  
Sbjct: 51  EMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDA 110

Query: 138 TRCDLYGQCSHFQEKKYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGP 197
            + + +       E K+   ++++++ +HYD++ ++ F+    +    S     D  +  
Sbjct: 111 VKIEKFN------EDKFDNYILILFNGIHYDSLTMNEFKTVFNKNQPES-----DDVLTA 159

Query: 198 AEELAFE 204
           A +LA  
Sbjct: 160 ALQLASN 166

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 53.8 bits (129), Expect = 3e-09
 Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 1   MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDT 60
           +++++G+HYD+L ++ F+    +       V            AL+L    ++     +T
Sbjct: 126 LILFNGIHYDSLTMNEFKTVFNKNQPESDDVLTA---------ALQLASNLKQTGYSFNT 176

Query: 61  ANFTLCYGVCQIGVIGQKAIAA 82
               +    CQ+  +G++ +A 
Sbjct: 177 HKAQIKCNTCQMTFVGEREVAR 198

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 73.2 bits (179), Expect = 2e-16
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 93  EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK 152
              +G S +DY   +    +WG  +E S+LA   G  I  + +  +     G    F + 
Sbjct: 81  ARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAG--IKFGDG 138

Query: 153 KYSERVMLIY-DELHYDAVAISAFEGAPVEFDQS 185
                V L++  + H+DA+ I            S
Sbjct: 139 DVFTAVNLLHSGQTHFDALRILPQFETDTREALS 172

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 71.2 bits (174), Expect = 9e-16
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 93  EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK 152
              +G S +DY   +    +WG  +E S+LA   G  I  + +  +     G    F + 
Sbjct: 81  ARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGI--KFGDG 138

Query: 153 KYSERVMLIY-DELHYDAVAISAFEGAPVEFDQS 185
                V L++  + H+DA+ I            S
Sbjct: 139 DVFTAVNLLHSGQTHFDALRILPQFETDTREALS 172

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 52.4 bits (125), Expect = 6e-09
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 93  EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK 152
             ++ +    Y +  +     G  IE+  +A+ Y   +  Y   T   + +    H   +
Sbjct: 105 SNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTF----HGIHQ 160

Query: 153 KYSERVMLIY-DELHYDAV 170
              E + + Y   +HY++V
Sbjct: 161 NEDEPIRVSYHRNIHYNSV 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.97
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.87
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.86
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.86
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.8
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.67
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.65
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.61
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.34
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	84.53

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.97  E-value=2.1e-31  Score=225.90  Aligned_cols=119  Identities=23%  Similarity=0.497  Sum_probs=108.0

Q ss_pred             cchhHHHHHHHHHhccccccccccCCChHHHhhhcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCCeeeeCCCcccccc
Q 028650           73 GVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQCSHFQEK  152 (206)
Q Consensus        73 ~l~lR~~vA~~I~~np~~f~~~~L~~~~~eYc~~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~~~~~~ge~~~~~~~  152 (206)
                      ...+|+.++++|++|++.|.|+|+++++++||+||+++..|||+|||+|||++|+++|.|++.+++++..||+     +.
T Consensus        46 ~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~-----~~  120 (212)
T 3by4_A           46 VRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNE-----DK  120 (212)
T ss_dssp             SHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEEST-----TT
T ss_pred             HHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCC-----CC
Confidence            4589999999999999999998999999999999999999999999999999999999999998888999998     43


Q ss_pred             cCCCeEEEEecCcccccccccccCCCCCCCCeeeeeCCCCCChhHHHHHHhhhC
Q 028650          153 KYSERVMLIYDELHYDAVAISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC  206 (206)
Q Consensus       153 ~~~~~i~L~Y~G~HYdsl~~~~~~~~~~~~d~t~f~~~~~~~~~~~~~~a~~l~  206 (206)
                       .+++|+|+|+|+|||||++        ++|+|+||++|++. +.++++|++||
T Consensus       121 -~~~~I~L~Y~g~HYdsl~~--------~~d~~~f~~~~~~~-~~~~~~a~~l~  164 (212)
T 3by4_A          121 -FDNYILILFNGIHYDSLTM--------NEFKTVFNKNQPES-DDVLTAALQLA  164 (212)
T ss_dssp             -CSEEEEEEECSSCEEEEEE--------TTTBCCEETTSTTH-HHHHHHHHHHH
T ss_pred             -CCCeEEEEEcCCcceEEec--------CCCcccCCccccch-HHHHHHHHHHH
Confidence             4678999999999999997        78999999998655 66777777764

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.87  E-value=9.4e-23  Score=169.87  Aligned_cols=94  Identities=17%  Similarity=0.336  Sum_probs=65.6

Q ss_pred             cchhHHHHHHHHHhccccccccccCCChHHHhhhcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCCeeee-CCCccccc
Q 028650           73 GVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLY-GQCSHFQE  151 (206)
Q Consensus        73 ~l~lR~~vA~~I~~np~~f~~~~L~~~~~eYc~~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~~~~~~-ge~~~~~~  151 (206)
                      ...+|+.++++|++|++.|.+ |+++++++||+||+++..|||+|||+|||++|+++|.|++..+.++..| |+     +
T Consensus        86 h~~LR~~vv~yi~~n~d~f~~-Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~-----~  159 (185)
T 3pfy_A           86 HEVVRKHCMDYLMKNADYFSN-YVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGI-----H  159 (185)
T ss_dssp             HHHHHHHHHHHHHHTHHHHTT-CC-----------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTT-----S
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCc-----c
Confidence            358999999999999999988 7888999999999999999999999999999999999999876555444 54     3


Q ss_pred             ccCCCeEEEEec-Ccccccccc
Q 028650          152 KKYSERVMLIYD-ELHYDAVAI  172 (206)
Q Consensus       152 ~~~~~~i~L~Y~-G~HYdsl~~  172 (206)
                      ....++|+|+|+ |+|||||+-
T Consensus       160 ~~~~~~I~L~Y~~~~HYnSv~~  181 (185)
T 3pfy_A          160 QNEDEPIRVSYHRNIHYNSVVN  181 (185)
T ss_dssp             CCTTSCEEEEEETTTEEEEEEC
T ss_pred             CCCCCEEEEEECCCCCcccccC
Confidence            345688999996 799999974

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.86  E-value=2.7e-22  Score=166.95  Aligned_cols=95  Identities=21%  Similarity=0.322  Sum_probs=82.2

Q ss_pred             cchhHHHHHHHHHhccccccccccCCChHHHhhhcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCC----eeeeCCCcc
Q 028650           73 GVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR----CDLYGQCSH  148 (206)
Q Consensus        73 ~l~lR~~vA~~I~~np~~f~~~~L~~~~~eYc~~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~~----~~~~ge~~~  148 (206)
                      ...+|+.+++++++|++.   +++++++++||+||+++.+|||++||+|||++|+++|.|+++++..    +.+||+   
T Consensus        64 ~~~LR~~~~~yi~~~~~~---~~~~~~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~---  137 (185)
T 3phx_A           64 KRLTESAARKYYQEEPEA---RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGD---  137 (185)
T ss_dssp             HHHHHHHHHHHGGGCTTH---HHHCCCHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESS---
T ss_pred             HHHHHHHHHHHHHhChHh---hhcCCCHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCC---
Confidence            458999999999999999   4789999999999999999999999999999999999999876543    688988   


Q ss_pred             cccccCCCeEEEEecC-cccccccccccC
Q 028650          149 FQEKKYSERVMLIYDE-LHYDAVAISAFE  176 (206)
Q Consensus       149 ~~~~~~~~~i~L~Y~G-~HYdsl~~~~~~  176 (206)
                        ++ ..++|+|+|+| +|||||+..+..
T Consensus       138 --~~-~~~~I~L~Y~g~~HYdsl~~~~~~  163 (185)
T 3phx_A          138 --GD-VFTAVNLLHSGQTHFDALRILPQF  163 (185)
T ss_dssp             --CC-TTTSEEEEEETTTEEEEEEECGGG
T ss_pred             --CC-CCCEEEEEECCCcCchhceECCCC
Confidence              32 25789999999 999999986543

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.86  E-value=3.1e-22  Score=170.67  Aligned_cols=98  Identities=20%  Similarity=0.308  Sum_probs=85.1

Q ss_pred             cchhHHHHHHHHHhccccccccccCCChHHHhhhcCCCCccchHHHHHHHHHHhCCeeEEEEcCCC----CeeeeCCCcc
Q 028650           73 GVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTT----RCDLYGQCSH  148 (206)
Q Consensus        73 ~l~lR~~vA~~I~~np~~f~~~~L~~~~~eYc~~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~----~~~~~ge~~~  148 (206)
                      ...+|+.++++|++|++.   +++++++++||+||+++..|||++||+|||++|+++|.|+++++.    ++.+||+   
T Consensus        64 h~~LR~~va~yi~~n~d~---~~~~~~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge---  137 (219)
T 3phu_A           64 KRLTESAARKYYQEEPEA---RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGD---  137 (219)
T ss_dssp             HHHHHHHHHHHGGGCHHH---HHHCCCHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESS---
T ss_pred             HHHHHHHHHHHHHhChhh---hhcCCCHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecC---
Confidence            458999999999999999   478999999999999999999999999999999999999987654    4788998   


Q ss_pred             cccccCCCeEEEEecC-cccccccccccCCCC
Q 028650          149 FQEKKYSERVMLIYDE-LHYDAVAISAFEGAP  179 (206)
Q Consensus       149 ~~~~~~~~~i~L~Y~G-~HYdsl~~~~~~~~~  179 (206)
                        ++ ..++|+|+|+| +|||||+..+....+
T Consensus       138 --~~-~~~~I~L~Y~g~~HYdSL~~~~d~~~~  166 (219)
T 3phu_A          138 --GD-VFTAVNLLHSGQTHFDALRILPQFETD  166 (219)
T ss_dssp             --CC-TTTSEEEEEETTTEEEEEEECTTTCCS
T ss_pred             --CC-CCCeEEEEECCCcCchhheECCCCCCC
Confidence              32 25789999998 999999987554333

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.80  E-value=1.9e-20  Score=158.57  Aligned_cols=82  Identities=21%  Similarity=0.387  Sum_probs=44.0

Q ss_pred             CEeecccccceeeecCCCCCCCCCCeeeeeCCCCCccchHHHHHHHHHHHHhhcCcccccccceeeeeeccccchhHHHH
Q 028650            1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAI   80 (206)
Q Consensus         1 ~liYsGIHYD~l~l~~~~~~~~~~d~tiF~~~d~~~~~~~~~~A~~L~~~lk~~~~~Tdt~~F~LrC~~C~~~l~lR~~v   80 (206)
                      +|+|+|.|||+|.+        ++|+|+||++|+.. +.++++|++||++||++||||||++|+|||++|++.+.+++. 
T Consensus       126 ~L~Y~g~HYdsl~~--------~~d~~~f~~~~~~~-~~~~~~a~~l~~~~~~~~~~t~~~~~~l~C~~C~~~~~g~~~-  195 (212)
T 3by4_A          126 LILFNGIHYDSLTM--------NEFKTVFNKNQPES-DDVLTAALQLASNLKQTGYSFNTHKAQIKCNTCQMTFVGERE-  195 (212)
T ss_dssp             EEEECSSCEEEEEE--------TTTBCCEETTSTTH-HHHHHHHHHHHHHHHHTTCCC----------------------
T ss_pred             EEEEcCCcceEEec--------CCCcccCCccccch-HHHHHHHHHHHHHHHHcCCcccccCeEEEcccCCCcccCHHH-
Confidence            48899999999988        57899999998653 567799999999999999999999999999999999999995 


Q ss_pred             HHHHHhcccccc
Q 028650           81 AATVASDTVKHS   92 (206)
Q Consensus        81 A~~I~~np~~f~   92 (206)
                      |..|++.++|.+
T Consensus       196 a~~ha~~tgH~~  207 (212)
T 3by4_A          196 VARHAESTGHVD  207 (212)
T ss_dssp             ------------
T ss_pred             HHHHHHHhCCCC
Confidence            779999999975

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.67  E-value=7.5e-17  Score=138.34  Aligned_cols=92  Identities=13%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             chhHHHHHHHHHhccccccccccC--CChHHHhh-hcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCC--e--eeeCCC
Q 028650           74 VIGQKAIAATVASDTVKHSEAFIG--KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR--C--DLYGQC  146 (206)
Q Consensus        74 l~lR~~vA~~I~~np~~f~~~~L~--~~~~eYc~-~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~~--~--~~~ge~  146 (206)
                      ..+|..+|.+|++|++.|.| |++  .++++||+ .|+.+..|||+|||.|||++|++||.|++++.+.  +  ..|.+ 
T Consensus       133 ~~lR~lta~~i~~~~d~f~p-Fi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~-  210 (234)
T 1tff_A          133 QFLRLLTSAFIRNRADFFRH-FIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE-  210 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGG-GSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC-
T ss_pred             HHHHHHHHHHHHHCHHHHhh-hhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC-
Confidence            46999999999999999998 663  48999999 8999999999999999999999999999986543  1  23443 


Q ss_pred             cccccccCCCeEEEEecCccccccccc
Q 028650          147 SHFQEKKYSERVMLIYDELHYDAVAIS  173 (206)
Q Consensus       147 ~~~~~~~~~~~i~L~Y~G~HYdsl~~~  173 (206)
                            +..++|+|+|.|.|||+|+..
T Consensus       211 ------~~~~~I~LlY~pgHYdily~~  231 (234)
T 1tff_A          211 ------AATPSVYLLYKTSHYNILYAA  231 (234)
T ss_dssp             ------CSSCSEEEEEETTEEEEEEEC
T ss_pred             ------CCCCeEEEEECCCCceecccC
Confidence                  224679999999999999854

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.65  E-value=2.3e-16  Score=135.22  Aligned_cols=90  Identities=17%  Similarity=0.259  Sum_probs=75.7

Q ss_pred             chhHHHHHHHHHhccccccccccC--CChHHHhhh-cCCCCccchHHHHHHHHHHhCCeeEEEEcCCCC-----eeeeCC
Q 028650           74 VIGQKAIAATVASDTVKHSEAFIG--KSNQDYCSW-IQDPEKWGGAIELSILADYYGSEIAAYDIQTTR-----CDLYGQ  145 (206)
Q Consensus        74 l~lR~~vA~~I~~np~~f~~~~L~--~~~~eYc~~-I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~~-----~~~~ge  145 (206)
                      ..+|..+|.+|++|++.|.| |++  .++++||++ |+.+..|||+|||.|||++|+++|.|++++.+.     ...|++
T Consensus       136 ~~lR~lta~yi~~~~d~f~p-Fi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~  214 (234)
T 2zfy_A          136 VYLRLLTSGYLQRESKFFEH-FIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE  214 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGG-GCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST
T ss_pred             HHHHHHHHHHHHHCHHHHhc-ccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC
Confidence            47999999999999999998 563  489999984 899999999999999999999999999986543     235555


Q ss_pred             CcccccccCCCeEEEEecCccccccc
Q 028650          146 CSHFQEKKYSERVMLIYDELHYDAVA  171 (206)
Q Consensus       146 ~~~~~~~~~~~~i~L~Y~G~HYdsl~  171 (206)
                           +  ..++|+|+|.+.|||+|+
T Consensus       215 -----~--~~p~I~LlY~pgHYdiLy  233 (234)
T 2zfy_A          215 -----G--SEPKVYLLYRPGHYDILY  233 (234)
T ss_dssp             -----T--CCCSEEEEEETTEEEEEE
T ss_pred             -----C--CCCeEEEEECCCCcccCC
Confidence                 2  246799999988999986

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.61  E-value=9.5e-16  Score=135.02  Aligned_cols=96  Identities=14%  Similarity=0.171  Sum_probs=79.1

Q ss_pred             chhHHHHHHHHHhccccccccccC-CChHHHhh-hcCCCCccchHHHHHHHHHHhCCeeEEEEcCCC--C---eee-eCC
Q 028650           74 VIGQKAIAATVASDTVKHSEAFIG-KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTT--R---CDL-YGQ  145 (206)
Q Consensus        74 l~lR~~vA~~I~~np~~f~~~~L~-~~~~eYc~-~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~--~---~~~-~ge  145 (206)
                      ..+|..+|.+|+.|++.|.|++.| +++++||+ +|+.+..|||+|||.|||++|+++|.|+..+.+  .   ... |-+
T Consensus       171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~  250 (284)
T 4dhi_B          171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS  250 (284)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC
T ss_pred             HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC
Confidence            469999999999999999995555 68999999 999999999999999999999999999987642  1   234 633


Q ss_pred             Cccccccc-CCCeEEEEecCcccccccccc
Q 028650          146 CSHFQEKK-YSERVMLIYDELHYDAVAISA  174 (206)
Q Consensus       146 ~~~~~~~~-~~~~i~L~Y~G~HYdsl~~~~  174 (206)
                           +.. -...|.|+|.+.|||.|+..+
T Consensus       251 -----~~~~~~p~I~LLYrpgHYDILY~~~  275 (284)
T 4dhi_B          251 -----DDQQIAPEITLLYRPGHYDVIYKKD  275 (284)
T ss_dssp             -----CCSCCCCSEEEEEETTEEEEEEECC
T ss_pred             -----CCCCCCCEEEEeecCCCccccccCC
Confidence                 111 125699999999999999764

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.34  E-value=1.7e-12  Score=118.54  Aligned_cols=91  Identities=15%  Similarity=0.222  Sum_probs=75.9

Q ss_pred             chhHHHHHHHHHhccccccccccC-CChHHHhh-hcCCCCccchHHHHHHHHHHhCCeeEEEEcCCCC-----eeeeCCC
Q 028650           74 VIGQKAIAATVASDTVKHSEAFIG-KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR-----CDLYGQC  146 (206)
Q Consensus        74 l~lR~~vA~~I~~np~~f~~~~L~-~~~~eYc~-~I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~~-----~~~~ge~  146 (206)
                      ..+|..++.+|+.|++.|.|++.| .++++||+ +|+.+..|||+|||.|||++|+++|.|+..+.+.     ...|++ 
T Consensus       301 ~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~-  379 (399)
T 4ddg_A          301 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE-  379 (399)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT-
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC-
Confidence            369999999999999999984433 58999999 9999999999999999999999999999766432     234544 


Q ss_pred             cccccccCCCeEEEEecCccccccc
Q 028650          147 SHFQEKKYSERVMLIYDELHYDAVA  171 (206)
Q Consensus       147 ~~~~~~~~~~~i~L~Y~G~HYdsl~  171 (206)
                            +....|+|+|..-|||.|+
T Consensus       380 ------~~~~~I~LLYrPgHYDiLY  398 (399)
T 4ddg_A          380 ------GSEPKVYLLYRPGHYDILY  398 (399)
T ss_dssp             ------TCCCCCEEEEETBEEEEEE
T ss_pred             ------CCCCEEEEEEcCCccccCC
Confidence                  2256799999988999986

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=84.53  E-value=0.4  Score=40.30  Aligned_cols=19  Identities=42%  Similarity=0.562  Sum_probs=15.3

Q ss_pred             CEeecc-cccceeeecCCCC
Q 028650            1 MLIYDG-LHYDALAISPFEG   19 (206)
Q Consensus         1 ~liYsG-IHYD~l~l~~~~~   19 (206)
                      +|+|+| +|||+|...+...
T Consensus       145 ~L~Y~g~~HYdSL~~~~d~~  164 (219)
T 3phu_A          145 NLLHSGQTHFDALRILPQFE  164 (219)
T ss_dssp             EEEEETTTEEEEEEECTTTC
T ss_pred             EEEECCCcCchhheECCCCC
Confidence            378999 9999998876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	9e-07

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 9e-07
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 93  EAFI--GKSNQDYCSW-IQDPEKWGGAIELSILADYYGS--EIAAYDIQTTRCDLYGQCS 147
             FI      +D+C+  ++        I+++ L+       ++   D   T  +      
Sbjct: 145 RHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALN-----H 199

Query: 148 HFQEKKYSERVMLIYDELHYDAV 170
           H   +  +  V L+Y   HY+ +
Sbjct: 200 HVFPEAATPSVYLLYKTSHYNIL 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.58

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-15  Score=127.66  Aligned_cols=92  Identities=11%  Similarity=0.186  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHHhccccccccccC-CChHHHhhh-cCCCCccchHHHHHHHHHHhCCeeEEEEcCCCC--ee--eeCCCcc
Q 028650           75 IGQKAIAATVASDTVKHSEAFIG-KSNQDYCSW-IQDPEKWGGAIELSILADYYGSEIAAYDIQTTR--CD--LYGQCSH  148 (206)
Q Consensus        75 ~lR~~vA~~I~~np~~f~~~~L~-~~~~eYc~~-I~~~~~WGG~iEL~aLs~~~~~~I~v~~~~~~~--~~--~~ge~~~  148 (206)
                      -+|..++.+++.|++.|.+++.+ .++++||.| |+.+..|||++||.|||++|+++|.|+.++...  +.  .+++   
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~---  204 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE---  204 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC---
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCC---
Confidence            48999999999999999984433 578999987 899999999999999999999999999876432  21  2222   


Q ss_pred             cccccCCCeEEEEecCccccccccc
Q 028650          149 FQEKKYSERVMLIYDELHYDAVAIS  173 (206)
Q Consensus       149 ~~~~~~~~~i~L~Y~G~HYdsl~~~  173 (206)
                          +...+|+|+|.+.|||.|+..
T Consensus       205 ----~~~~~I~Lly~pgHYdiLY~~  225 (228)
T d1tffa_         205 ----AATPSVYLLYKTSHYNILYAA  225 (228)
T ss_dssp             ----CSSCSEEEEEETTEEEEEEEC
T ss_pred             ----CCCCEEEEEeCCCCcccCccC
Confidence                235689999999999999854