Citrus Sinensis ID: 028652

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
MLSKPRLIDFVNIPLVASVLPLIKYSLTSILQLSKEEGPAPVPTPAKVSSTPALNYITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDLQYKEDKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTADPLKGYP
ccccccHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccEEEEEEEEccccccccEEEEEEcEEEEEEEccccccEEEccccccccccccccEEEEEccEEEEEEEEcccccccccEEEcccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccc
ccccccEEcHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccEEEEEEEEcccccccEEEEEcccEEEEEEEccccccEEEEEccccccccccccEEEEEccEEEEEEEccccccHHHcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccc
mlskprlidfvniplvaSVLPLIKYSLTSILQLskeegpapvptpakvsstpalnyitlgsfswdqdneKVKIYISLEGVVQDKMEAEFKQWSFdvkfhdvqgknyrftsprlnqeivpekskvlvkPTRVVIMLFKAskgnwldlqykedklkpnldkerdpMAGIMDLMKNMYEEGDDEMKRTIAKAWtdarsgktadplkgyp
mlskprlidfvniplVASVLPLIKYSLTSILQLSKEEGPAPVPTPAKVSSTPALNYITLGsfswdqdnEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYrftsprlnqeivpekskvlvkpTRVVIMLFkaskgnwldlqykedklkpnldkerdpMAGIMDLMKNMYEEGDDEMKRTIAKawtdarsgktadplkgyp
MLSKPRLIDFVNIPLVASVLPLIKYSLTSILQLSKEEGPAPVPTPAKVSSTPALNYITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDLQYKEDKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTADPLKGYP
******LIDFVNIPLVASVLPLIKYSLTSILQL*******************ALNYITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDLQYK*********************************************************
****PR*****************************************************GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLD*************************************************************
MLSKPRLIDFVNIPLVASVLPLIKYSLTSILQLSK************VSSTPALNYITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDLQYKEDKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTD**************
***KPRLIDFVNIPLVASVLPLIKYSLTSILQLSKEE**************PALNYITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDLQY**********KERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSG**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLSKPRLIDFVNIPLVASVLPLIKYSLTSILQLSKEEGPAPVPTPAKVSSTPALNYITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDLQYKEDKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTADPLKGYP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query206 2.2.26 [Sep-21-2011]
Q9CXW3229 Calcyclin-binding protein yes no 0.742 0.668 0.361 1e-19
Q6AYK6229 Calcyclin-binding protein yes no 0.742 0.668 0.361 2e-19
Q3T168230 Calcyclin-binding protein yes no 0.766 0.686 0.350 5e-19
Q4R4P3228 Calcyclin-binding protein N/A no 0.766 0.692 0.350 2e-18
Q9HB71228 Calcyclin-binding protein no no 0.766 0.692 0.350 3e-18
Q5R6Z8228 Calcyclin-binding protein yes no 0.766 0.692 0.350 3e-18
>sp|Q9CXW3|CYBP_MOUSE Calcyclin-binding protein OS=Mus musculus GN=Cacybp PE=1 SV=1 Back     alignment and function desciption
 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 13/166 (7%)

Query: 37  EGPAPVPTPAKVSSTPALNYITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWS 93
           E PA V  P     T     + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + S
Sbjct: 59  EKPAAVVAPLTTGYT-----VKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERS 113

Query: 94  FDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDL-----QY 148
           FD+   ++ GKNY      L + I  E S   VK   V+I+  K ++    D      + 
Sbjct: 114 FDLLVKNLNGKNYSMIVNNLLKPISVESSSKKVKTDTVIILCRKKAENTRWDYLTQVEKE 173

Query: 149 KEDKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDAR 194
            ++K KP+ D E DP  G+M+++K +YE+GDD+MKRTI KAW ++R
Sbjct: 174 CKEKEKPSYDTEADPSEGLMNVLKKIYEDGDDDMKRTINKAWVESR 219
May be involved in calcium-dependent ubiquitination and subsequent proteasomal degradation of target proteins. Probably serves as a molecular bridge in ubiquitin E3 complexes. Participates in the ubiquitin-mediated degradation of beta-catenin (CTNNB1).
Mus musculus (taxid: 10090)
>sp|Q6AYK6|CYBP_RAT Calcyclin-binding protein OS=Rattus norvegicus GN=Cacybp PE=1 SV=1 Back     alignment and function description
>sp|Q3T168|CYBP_BOVIN Calcyclin-binding protein OS=Bos taurus GN=CACYBP PE=2 SV=1 Back     alignment and function description
>sp|Q4R4P3|CYBP_MACFA Calcyclin-binding protein OS=Macaca fascicularis GN=CACYBP PE=2 SV=1 Back     alignment and function description
>sp|Q9HB71|CYBP_HUMAN Calcyclin-binding protein OS=Homo sapiens GN=CACYBP PE=1 SV=2 Back     alignment and function description
>sp|Q5R6Z8|CYBP_PONAB Calcyclin-binding protein OS=Pongo abelii GN=CACYBP PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query206
225443859218 PREDICTED: calcyclin-binding protein [Vi 0.956 0.903 0.707 1e-78
255557303217 Calcyclin-binding protein, putative [Ric 0.932 0.884 0.717 7e-77
224113071221 predicted protein [Populus trichocarpa] 0.907 0.846 0.659 2e-70
351721122215 uncharacterized protein LOC100527228 [Gl 0.907 0.869 0.659 9e-70
449466298217 PREDICTED: calcyclin-binding protein-lik 0.912 0.866 0.680 1e-69
351724475219 uncharacterized protein LOC100500062 [Gl 0.810 0.762 0.718 3e-68
388503246218 unknown [Lotus japonicus] 0.810 0.766 0.736 7e-68
357475237221 Calcyclin-binding protein [Medicago trun 0.961 0.895 0.627 7e-67
388507150221 unknown [Medicago truncatula] 0.961 0.895 0.622 2e-66
242058737221 hypothetical protein SORBIDRAFT_03g03502 0.733 0.683 0.768 2e-65
>gi|225443859|ref|XP_002276421.1| PREDICTED: calcyclin-binding protein [Vitis vinifera] gi|297740707|emb|CBI30889.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 143/202 (70%), Positives = 170/202 (84%), Gaps = 5/202 (2%)

Query: 4   KPRLIDFVNIPLVASVLPLIKYSLTSILQLSKEEGPAPVPTPAKVSSTPALNYITLGSFS 63
           +PR++  ++    + +  L K S  ++   S  + PAP+PTPA  +STPALNY+TLGSFS
Sbjct: 21  RPRIVSLIS----SEIRNLEKLSKAAV-STSTLQTPAPLPTPASATSTPALNYVTLGSFS 75

Query: 64  WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSK 123
           WDQDNEKVKIY+SLEGV Q+KM+  FK  S DVKFH+VQGKNYR   P+LN+EIVPEK K
Sbjct: 76  WDQDNEKVKIYVSLEGVEQEKMDTLFKPTSIDVKFHEVQGKNYRCAIPKLNKEIVPEKCK 135

Query: 124 VLVKPTRVVIMLFKASKGNWLDLQYKEDKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMK 183
           V++KPTRV+I LFKASKGNWLDL++KEDKLKP+LDKERDPMAGIMDLMKNMYEEGDDEMK
Sbjct: 136 VVIKPTRVIITLFKASKGNWLDLKFKEDKLKPDLDKERDPMAGIMDLMKNMYEEGDDEMK 195

Query: 184 RTIAKAWTDARSGKTADPLKGY 205
           +TIAKAW+DARSGKTADPLKGY
Sbjct: 196 QTIAKAWSDARSGKTADPLKGY 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255557303|ref|XP_002519682.1| Calcyclin-binding protein, putative [Ricinus communis] gi|223541099|gb|EEF42655.1| Calcyclin-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224113071|ref|XP_002332656.1| predicted protein [Populus trichocarpa] gi|118489272|gb|ABK96441.1| unknown [Populus trichocarpa x Populus deltoides] gi|222832702|gb|EEE71179.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351721122|ref|NP_001236687.1| uncharacterized protein LOC100527228 [Glycine max] gi|255631828|gb|ACU16281.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449466298|ref|XP_004150863.1| PREDICTED: calcyclin-binding protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351724475|ref|NP_001236291.1| uncharacterized protein LOC100500062 [Glycine max] gi|255628923|gb|ACU14806.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388503246|gb|AFK39689.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357475237|ref|XP_003607904.1| Calcyclin-binding protein [Medicago truncatula] gi|85719369|gb|ABC75374.1| SGS; HSP20-like chaperone [Medicago truncatula] gi|355508959|gb|AES90101.1| Calcyclin-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388507150|gb|AFK41641.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|242058737|ref|XP_002458514.1| hypothetical protein SORBIDRAFT_03g035020 [Sorghum bicolor] gi|241930489|gb|EES03634.1| hypothetical protein SORBIDRAFT_03g035020 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query206
GENEDB_PFALCIPARUM|PFL1845c228 PFL1845c "calcyclin binding pr 0.810 0.732 0.363 8.2e-28
UNIPROTKB|Q8I542228 PFL1845c "Calcyclin binding pr 0.810 0.732 0.363 8.2e-28
UNIPROTKB|F1S710230 CACYBP "Uncharacterized protei 0.766 0.686 0.380 1e-22
MGI|MGI:1270839229 Cacybp "calcyclin binding prot 0.834 0.751 0.362 1e-22
RGD|1303146229 Cacybp "calcyclin binding prot 0.834 0.751 0.362 1e-22
UNIPROTKB|Q3T168230 CACYBP "Calcyclin-binding prot 0.766 0.686 0.374 1.6e-22
UNIPROTKB|E1BQN9221 CACYBP "Uncharacterized protei 0.796 0.742 0.360 5.5e-22
UNIPROTKB|Q5R370185 CACYBP "Calcyclin-binding prot 0.766 0.854 0.362 1.1e-21
UNIPROTKB|Q9HB71228 CACYBP "Calcyclin-binding prot 0.766 0.692 0.362 1.1e-21
FB|FBgn0029882230 CG3226 [Drosophila melanogaste 0.703 0.630 0.324 1.3e-15
GENEDB_PFALCIPARUM|PFL1845c PFL1845c "calcyclin binding protein, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 64/176 (36%), Positives = 112/176 (63%)

Query:    31 LQLSKEEGPAPVPTPAKVS-STPALNYITLGSFSWDQDNEKVKIYISLEGVV---QDKME 86
             L+++K + P  + T  KV  + P ++Y ++ SF+W+Q+  KV I+++++ V    ++K+ 
Sbjct:    47 LKINKNQMPNKI-TETKVQLNDPIVSYNSVQSFAWNQERNKVTIFLTVKNVHTVGEEKIS 105

Query:    87 AEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDL 146
               F++ SF++K +DV  K+YRF   +L  +I+P K    VK   V + L K    +W +L
Sbjct:   106 TVFEERSFEIKMNDVDKKHYRFCIKKLCDKIIPNKCSFKVKKDSVHVTLVKQENKHWENL 165

Query:   147 QYKED---KLKP-NLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKT 198
              +KE    K+KP ++D++ +P A +M++MK +Y+EGD +MKRTIAKAW +A   K+
Sbjct:   166 HFKESPMSKIKPPSMDEQAEPSAMLMNMMKQLYQEGDSDMKRTIAKAWCEANEKKS 221
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q8I542 PFL1845c "Calcyclin binding protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|F1S710 CACYBP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1270839 Cacybp "calcyclin binding protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1303146 Cacybp "calcyclin binding protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T168 CACYBP "Calcyclin-binding protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQN9 CACYBP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R370 CACYBP "Calcyclin-binding protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HB71 CACYBP "Calcyclin-binding protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0029882 CG3226 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028284001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (218 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025402001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (347 aa)
   •    0.571
GSVIVG00007284001
SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (544 aa)
   •    0.464
04A18_50
SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_39, whole genome shotg [...] (190 aa)
   •    0.459
GSVIVG00019996001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (157 aa)
   •    0.428
GSVIVG00033164001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (188 aa)
   •    0.420
GSVIVG00005967001
SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (321 aa)
   •    0.410

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
cd0646892 cd06468, p23_CacyBP, p23_like domain found in prot 1e-33
cd0646384 cd06463, p23_like, Proteins containing this p23_li 1e-14
pfam0496978 pfam04969, CS, CS domain 5e-12
pfam0500278 pfam05002, SGS, SGS domain 1e-11
cd0646684 cd06466, p23_CS_SGT1_like, p23_like domain similar 2e-06
PLN03088356 PLN03088, PLN03088, SGT1, suppressor of G2 allele 0.001
>gnl|CDD|107225 cd06468, p23_CacyBP, p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information 
 Score =  115 bits (289), Expect = 1e-33
 Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 59  LGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQ 115
           +  ++WDQ ++ VKIYI+L+GV Q   + ++ EF + SF++K HD+ GKNYRFT  RL +
Sbjct: 1   ITKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLK 60

Query: 116 EIVPEKSKVLVKPTRVVIMLFKASKGNWLDL 146
           +I PEKS   VK  R+VI L K  +  W  L
Sbjct: 61  KIDPEKSSFKVKTDRIVITLAKKKEKKWESL 91

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes, in mouse endometrial events, and in thymocyte development. Length = 92
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>gnl|CDD|218355 pfam04969, CS, CS domain Back     alignment and domain information
>gnl|CDD|218373 pfam05002, SGS, SGS domain Back     alignment and domain information
>gnl|CDD|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 206
KOG3260224 consensus Calcyclin-binding protein CacyBP [Signal 100.0
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 100.0
KOG1309196 consensus Suppressor of G2 allele of skp1 [Signal 100.0
cd0646892 p23_CacyBP p23_like domain found in proteins simil 99.88
cd0648887 p23_melusin_like p23_like domain similar to the C- 99.88
COG5091368 SGT1 Suppressor of G2 allele of skp1 and related p 99.86
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 99.86
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 99.86
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 99.83
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 99.81
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 99.75
PF0500282 SGS: SGS domain ; InterPro: IPR007699 This domain 99.74
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 99.74
cd0646384 p23_like Proteins containing this p23_like domain 99.73
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 99.72
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.71
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 99.69
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 99.65
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 99.63
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 99.59
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 99.55
KOG2265179 consensus Nuclear distribution protein NUDC [Signa 99.55
KOG1667320 consensus Zn2+-binding protein Melusin/RAR1, conta 99.34
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.18
PF0903279 Siah-Interact_N: Siah interacting protein, N termi 98.24
COG0071146 IbpA Molecular chaperone (small heat shock protein 98.14
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 97.99
KOG4379 596 consensus Uncharacterized conserved protein (tumor 97.97
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 97.72
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 97.71
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 97.6
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 96.94
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 96.91
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 96.9
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 96.83
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 96.74
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 96.57
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 96.57
PRK10743137 heat shock protein IbpA; Provisional 96.56
PRK11597142 heat shock chaperone IbpB; Provisional 96.06
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 96.05
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 95.75
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 94.6
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 94.24
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 93.95
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 91.02
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 90.04
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=9.5e-50  Score=320.86  Aligned_cols=198  Identities=38%  Similarity=0.610  Sum_probs=174.1

Q ss_pred             hhHhhhccCCcccchHHHHHHHHHHhhhhccc------cCCCCC----CCCCCCCCCCcceeeeecceeeeeCCCEEEEE
Q 028652            5 PRLIDFVNIPLVASVLPLIKYSLTSILQLSKE------EGPAPV----PTPAKVSSTPALNYITLGSFSWDQDNEKVKIY   74 (206)
Q Consensus         5 ~~ll~~a~R~~v~~v~~~l~~~~~~le~~~~~------~~~~~~----~~~~~~~~~~~~~~~~i~~y~W~Qt~~~V~I~   74 (206)
                      +.||++|+|||   |+++|+.|+++||+++..      +..++.    +.+++..|..+.|.+.++.|+|+|+.++|++|
T Consensus        13 ~~ll~~Akr~R---V~d~ltseks~~E~ei~n~~~~kak~kae~~~~~~~s~s~~pvs~~yl~~vt~ygWDQs~kfVK~y   89 (224)
T KOG3260|consen   13 RQLLNIAKRPR---VLDLLTSEKSNLEKEIDNAVSSKAKPKAEVTVPAPVSSSGKPVSSSYLNYVTLYGWDQSNKFVKMY   89 (224)
T ss_pred             HHHHHHhcccH---HHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCccccCCcchhhhHHHhhhcCccccCCeeEEE
Confidence            57999999999   999999999999984321      111222    22233344455666888999999999999999


Q ss_pred             EEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCCCCCcccccccc----
Q 028652           75 ISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDLQYKE----  150 (206)
Q Consensus        75 I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~W~~L~~~~----  150 (206)
                      |++.||..++|+|+|+++||.+.+++++|++|.+.+++|+++|.|+.|+.+|+++.|.|.|+|.+..+|..|+..+    
T Consensus        90 ItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~~rwd~Lt~~~Ke~K  169 (224)
T KOG3260|consen   90 ITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVENTRWDYLTQVEKECK  169 (224)
T ss_pred             EEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhcccchHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999888888999998543    


Q ss_pred             CccCCCCCCCCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 028652          151 DKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTADPLKGY  205 (206)
Q Consensus       151 ~k~kp~~d~~~dp~~~l~~lfkkiY~~gDde~kRam~Ks~~ES~~~~~~~~~~~~  205 (206)
                      ++.+|+.|++.||++|||++|++||++||++|||+|+|||+|||.+++.+|..|.
T Consensus       170 ek~kpsl~ke~DP~~glmnvmKk~YeDGD~~mK~tIaKAWtesr~k~a~g~~~g~  224 (224)
T KOG3260|consen  170 EKEKPSLDKETDPSEGLMNVMKKIYEDGDDDMKQTIAKAWTESREKQAKGDTEGL  224 (224)
T ss_pred             hccCccccccCChHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhcCCccCC
Confidence            3468999999999999999999999999999999999999999999999998874

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only] Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms] Back     alignment and domain information
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown] Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
1x5m_A127 Solution Structure Of The Core Domain Of Calcyclin 4e-06
2jtt_C35 Solution Structure Of Calcium Loaded S100a6 Bound T 4e-05
>pdb|1X5M|A Chain A, Solution Structure Of The Core Domain Of Calcyclin Binding Protein; Siah-Interacting Protein (Sip) Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 38  GPAPVPTPAKVSSTPALNYITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSF 94
           G + V  P     T     + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SF
Sbjct: 4   GSSGVVAPITTGYT-----VKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSF 58
Query: 95  DVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFK 137
           D+   ++ GK+Y      L + I  E S   VK   V+I+  K
Sbjct: 59  DLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRK 101
>pdb|2JTT|C Chain C, Solution Structure Of Calcium Loaded S100a6 Bound To C- Terminal Siah-1 Interacting Protein Length = 35 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 2e-31
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 4e-18
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 1e-17
2jtt_C35 Calcyclin-binding protein; S100A6, SIAH-1 interact 4e-12
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 3e-07
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 3e-05
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127 Back     alignment and structure
 Score =  110 bits (276), Expect = 2e-31
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 43  PTPAKVSSTPALNYITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFH 99
            +   V+       + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   
Sbjct: 4   GSSGVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVK 63

Query: 100 DVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKG-NWLDLQYKEDKLKPNLD 158
           ++ GK+Y      L + I  E S   VK   V+I+  K  +   W  L   E + K    
Sbjct: 64  NLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKE--- 120

Query: 159 KERDPMAG 166
            +  P +G
Sbjct: 121 -KSGPSSG 127
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114 Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92 Back     alignment and structure
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus} Length = 35 Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 134 Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query206
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 99.92
2o30_A131 Nuclear movement protein; MCSG, structural genomic 99.91
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 99.88
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 99.86
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 99.86
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 99.85
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 99.84
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 99.82
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 99.8
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 99.77
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 99.75
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 99.73
2jtt_C35 Calcyclin-binding protein; S100A6, SIAH-1 interact 99.72
1ysm_A77 Calcyclin-binding protein; helix-turn-helix, metal 98.34
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 98.28
4fei_A102 Heat shock protein-related protein; stress respons 98.16
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.07
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 98.04
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 97.92
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 97.85
2a26_A50 Calcyclin-binding protein; helical hairpin, dimeri 97.82
1gme_A151 Heat shock protein 16.9B; small heat shock protein 97.74
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 97.73
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 97.6
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 97.45
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 97.29
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 97.0
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 96.61
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 92.14
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=99.92  E-value=1.8e-24  Score=166.86  Aligned_cols=104  Identities=30%  Similarity=0.492  Sum_probs=92.8

Q ss_pred             CCCCCcceeeeecceeeeeCCCEEEEEEEecCC---CCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceE
Q 028652           48 VSSTPALNYITLGSFSWDQDNEKVKIYISLEGV---VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKV  124 (206)
Q Consensus        48 ~~~~~~~~~~~i~~y~W~Qt~~~V~I~I~lk~v---~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~  124 (206)
                      +++++..|++.+++|+|+|+.+.|+|+|+++++   +++++.|+|++++|+|.+.+.+|++|.|.+.+||++|+|++|+|
T Consensus         9 ~a~~~~~y~~~~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~   88 (127)
T 1x5m_A            9 VAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSK   88 (127)
T ss_dssp             CCCCCCCCCEECCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEE
T ss_pred             ccCCccccccCccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEE
Confidence            344334566899999999999999999999998   88999999999999999987778899998867999999999999


Q ss_pred             EEcCCEEEEEEEeCCCC-CccccccccC
Q 028652          125 LVKPTRVVIMLFKASKG-NWLDLQYKED  151 (206)
Q Consensus       125 kv~~~kIeI~L~K~~~~-~W~~L~~~~~  151 (206)
                      ++.+++|+|+|+|++++ +|++|+..+.
T Consensus        89 ~v~~~kVei~L~K~~~~~~W~~L~~~~~  116 (127)
T 1x5m_A           89 KVKTDTVLILCRKKVENTRWDYLTQVEK  116 (127)
T ss_dssp             EEETTEEEEEEECSSSSCCCSSSBHHHH
T ss_pred             EEeCCEEEEEEEECCCCCCCCccccccc
Confidence            99999999999999987 9999996553
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus} Back     alignment and structure
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1 Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1 Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 206
d1wh0a_134 b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas 2e-21
d1rl1a_92 b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo 3e-14
d1wgva_124 b.15.1.4 (A:) NudC domain containing protein 3, NU 4e-13
d1wfia_131 b.15.1.4 (A:) Nuclear migration protein nudC {Mous 8e-10
d1ejfa_110 b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien 2e-09
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 2e-21
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 16/129 (12%)

Query: 37  EGPAPVPTPAKVSSTPALNYITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDV 96
            G + V  P        +N   + + S+++  + V +++ ++ + +D     F++  F +
Sbjct: 3   SGSSGVDEPE-----SMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTL 57

Query: 97  KFHDVQGKNYRFT-----------SPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLD 145
            F    G   R               +L   I PE+       +R+ I L K     W  
Sbjct: 58  IFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGG 117

Query: 146 LQYKEDKLK 154
           L+    ++ 
Sbjct: 118 LEAPAARVG 126
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Length = 131 Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query206
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 99.9
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 99.85
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 99.81
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 99.78
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 99.76
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 97.61
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 97.53
d2a26a147 Calcyclin-binding protein, CacyBP {Human (Homo sap 97.41
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.7e-24  Score=152.61  Aligned_cols=89  Identities=24%  Similarity=0.406  Sum_probs=84.6

Q ss_pred             cceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCC
Q 028652           60 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS  139 (206)
Q Consensus        60 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~  139 (206)
                      .||+|+||++.|+|+|+++++.++++.|+|++++|.+.+...+|..|.+.+ +||++|+|++|+|++.+++|+|+|+|++
T Consensus         3 ~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~~~~~kiei~L~K~~   81 (92)
T d1rl1a_           3 IKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKL-ELLHPIIPEQSTFKVLSTKIEIKLKKPE   81 (92)
T ss_dssp             CCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEE-CBSSCCCGGGEEEEECSSSEEEEEECSS
T ss_pred             CceeEEeCCCEEEEEEEeCCCChHheEEEEecCEEEEEEEcCCCcEEEEEE-EcCcccCchhcEEEEeCCEEEEEEEECC
Confidence            589999999999999999999999999999999999999888888999987 9999999999999999999999999999


Q ss_pred             CCCccccccc
Q 028652          140 KGNWLDLQYK  149 (206)
Q Consensus       140 ~~~W~~L~~~  149 (206)
                      +++|++|++.
T Consensus        82 ~~~W~~L~~~   91 (92)
T d1rl1a_          82 AVRWEKLEGQ   91 (92)
T ss_dssp             CCCCSSSBTT
T ss_pred             CCcCcCcccC
Confidence            8999999854
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2a26a1 a.2.16.1 (A:1-47) Calcyclin-binding protein, CacyBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure