Citrus Sinensis ID: 028668

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MVPVRFLPLHDHFYPNGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEcccccEEEEEEEEEcccccEEEEEEEccccccEEcccccEEEccccEEEEEEEEEcccccccccccccccccEEEEEEEEEcccccccHHHHHcccccccEEEEEEEEEccccccccHHHHHHHHHccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccccEEEEEEEEccccccccEEEEEEEEEEccccEEEEEEEccccccEEEcccccEEccccEEEEEEEEEEEccHccccccccccccEEEEEEEEEcccccccHHHHccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEcEEEEHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mvpvrflplhdhfypngavsslilpisstfpagkQVRSAIKIKNtskshvafkfqttapkscfmrppgailapgeSLIATVFKFvelpennekpmyqksRDKFKIISMKVkadvdyvpelfdeQKDQTAAEQILRVVflnperpepALEKLKRQLADADAAVAarkkppedtgpriigeglvIDEWKERRERYLARQQVEGVDSV
Flexible Loop (DISEMBL)
MVPVRFLPLHDHFYPNGAVSSLILPISSTFPAGKQVRSAIKikntskshvAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVelpennekpmyqksrdkFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVaarkkppedtgpriigeglvidewKERRERYlarqqvegvdsv
Low Complexity Region (SEG)
MVPVRFLPLHDHFYPNGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLadadaavaaRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Disordered region (IsUnstruct)
***VRFLPLHDHFYPNGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP*************KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL************************************IIGEGLVIDEWKE*****************
Disordered Region (DISOPRED)
*VPVRFL*****************PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV****************KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV********************************************************************
Disordered Region (DISEMBL)
MVPVRFLPLHDHFYPNGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQ***************EDTGPRIIGEGLVIDEWKERRERYL***********
Disordered Region (DISPRO)
*VPVRFLPLHDHFYPNGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPVRFLPLHDHFYPNGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q8VYN2	295	Vesicle-associated protei	no	no	0.843	0.586	0.843	7e-81
Q1ECE0	266	Vesicle-associated protei	no	no	0.843	0.650	0.775	8e-75
Q8LPQ7	287	Vesicle-associated protei	no	no	0.834	0.595	0.745	2e-63
Q9LVU1	220	Vesicle-associated protei	no	no	0.565	0.527	0.317	1e-07
Q8VZ95	256	Vesicle-associated protei	no	no	0.541	0.433	0.279	3e-06
Q9SHC8	239	Vesicle-associated protei	no	no	0.575	0.493	0.283	2e-05
Q84WW5	239	Vesicle-associated protei	no	no	0.551	0.472	0.284	2e-05
P40075	244	Vesicle-associated membra	yes	no	0.395	0.331	0.372	2e-05
B9DHD7	386	Vesicle-associated protei	no	no	0.526	0.279	0.318	2e-05
Q6Q595	175	Vesicle-associated membra	no	no	0.497	0.582	0.294	8e-05

>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1

 Score =  299 bits (766), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 146/173 (84%), Positives = 160/173 (92%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PENNE
Sbjct: 123 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPENNE 182

Query: 93  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
           KPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  PALEKLK
Sbjct: 183 KPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEKLK 242

Query: 153 RQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
           RQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 243 RQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 295

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1

 Score =  279 bits (714), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 135/174 (77%), Positives = 156/174 (89%), Gaps = 1/174 (0%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSAIK+KNTSKSH AFKFQTTAPKSC+MRPPG +LAPGES+ ATVFKFVE PENNE
Sbjct: 92  GKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFATVFKFVEHPENNE 151

Query: 93  K-PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKL 151
           K P+ QKS+ KFKI+S+KVK  V+YVPELFDEQKDQ A EQ+LRV+F++ +RP  ALEKL
Sbjct: 152 KQPLNQKSKVKFKIMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFIDADRPSAALEKL 211

Query: 152 KRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
           KRQL +A+AAV ARKKPP +TGPR++GEGLVIDEWKERRE+YLARQQVE VDS+
Sbjct: 212 KRQLDEAEAAVEARKKPPPETGPRVVGEGLVIDEWKERREKYLARQQVESVDSL 265

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1

 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/173 (74%), Positives = 145/173 (83%), Gaps = 2/173 (1%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSAIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFKFVE PENNE
Sbjct: 115 GKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVEPPENNE 174

Query: 93  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
           KPM QKS  KFKI+S+K+K   DY+PELF+EQKD  + EQ++RVVFL+PE P   +EKLK
Sbjct: 175 KPMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPNSMMEKLK 234

Query: 153 RQLADADAAVAARKKPPED-TGPRIIGEGLVIDEWKERRERYLARQQVEGVDS 204
            QLA+ADAA  ARKK  E   GP+ IGEGLVIDEWK+RRERYLA+QQ  GVD+
Sbjct: 235 SQLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ-GGVDA 286

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 30  FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
           F   KQ    +K+ N ++++VAFK +TT+PK  F+RP   ++ P +S I      V L  
Sbjct: 21  FELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIR----VTLQA 76

Query: 90  NNEKPMYQKSRDKFKIISMKV--KADVDYVPE-LFDEQKDQTAAEQILRVVFLNPERPEP 146
             E P   + +DKF + S  V    DVD +P+  F +   +T  E  L+V ++ P   + 
Sbjct: 77  QREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITPSTTQR 136

Query: 147 ALE 149
           + E
Sbjct: 137 SSE 139

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 7/118 (5%)

Query: 30  FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
           F   KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P     +T    V +  
Sbjct: 34  FELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCEVLVTMQA 89

Query: 90  NNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFLNPERP 144
             E P   + +DKF +  +     V   +  PE+F ++      E  LRV ++ P RP
Sbjct: 90  QKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPRP 147

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 9/127 (7%)

Query: 23  ILPISSTFP--AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 80
           I P+   FP    KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P  S    
Sbjct: 8   IDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSSEV- 66

Query: 81  VFKFVELPENNEKPMYQKSRDKF---KIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 137
               V +    E P   + +DKF    +++       D   E+F ++      E  LRVV
Sbjct: 67  ---LVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVV 123

Query: 138 FLNPERP 144
           ++ P RP
Sbjct: 124 YVAPPRP 130

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%)

Query: 30  FPAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP 88
           F   KQ   ++++ N T+   VAFK +TT P+   +RP   ++ PG+S   T    V + 
Sbjct: 18  FELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVT----VTMQ 73

Query: 89  ENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL--NPER 143
              E P+  + +DKF + ++ V       + + E+F+++  +   +  LRVV++  NP  
Sbjct: 74  AQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIPANPPS 133

Query: 144 PEP 146
           P P
Sbjct: 134 PVP 136

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 31  PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 90
           P  +Q      I N S   +AFK +TTAPK   +RP  A++APGE++   V  F+ L   
Sbjct: 16  PLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FLGL--- 71

Query: 91  NEKPMYQ-KSRDKFKIISMKVKADVD 115
            E+P    K RDKF +I++    D++
Sbjct: 72  TEEPAADFKCRDKFLVITLPSPYDLN 97

Targets proteins containing a FFAT motif to endoplasmic reticulum membranes. Regulates phospholipid biosynthesis by modulating the subcellular localization of the transcriptional repressor OPI1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 34  KQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 93
           KQ    +++ NT+  +VAFK +TT+PK   +RP   ++AP  +   TV     +    E 
Sbjct: 21  KQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI----MQAFKEP 76

Query: 94  PMYQKSRDKFKIISMKVKA---DVDYVPELFDEQKDQTAAEQILRVVFLNP-ERPE 145
           P     +DKF I S  V A   D D    +F + + +   E  LRV  + P + PE
Sbjct: 77  PPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSDSPE 132

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS22 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 31  PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 90
           P  KQ    IK++N  +  V FK +T+AP    +RP  AI+   ES+   +  F+ LP++
Sbjct: 13  PLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVNVQIV-FLGLPKS 71

Query: 91  NEKPMYQKSRDKFKIISMKVKADVDYV---------PELFDEQKDQTAAEQI 133
                  + RDKF I+++ + A    V         P L ++ KD    ++I
Sbjct: 72  TADDEMDQKRDKFLIVTLPIPAAYQNVEDGELLSDWPNLEEQYKDDIVFKKI 123

Targets proteins containing a FFAT motif to membranes (By similarity). Involved in regulation of phospholipid metabolism.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
224116236	235	predicted protein [Populus trichocarpa]	0.843	0.736	0.895	3e-84
255567425	281	structural molecule, putative [Ricinus c	0.843	0.615	0.884	7e-82
297804004	300	vesicle-associated membrane family prote	0.843	0.576	0.849	5e-80
334186769	314	vesicle-associated membrane family prote	0.843	0.550	0.843	4e-79
18415696	295	vesicle-associated membrane family prote	0.843	0.586	0.843	4e-79
224076792	233	predicted protein [Populus trichocarpa]	0.843	0.742	0.890	5e-78
388503260	266	unknown [Lotus japonicus]	0.858	0.661	0.778	3e-77
359495700	264	PREDICTED: vesicle-associated protein 4-	0.946	0.734	0.760	4e-77
357144664	235	PREDICTED: vesicle-associated protein 4-	0.843	0.736	0.832	3e-74
357475961	266	Vesicle-associated membrane protein-asso	0.834	0.642	0.827	4e-74

>gi|224116236|ref|XP_002317246.1| predicted protein [Populus trichocarpa] gi|222860311|gb|EEE97858.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (810), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/173 (89%), Positives = 163/173 (94%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSAI+IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKFVELPENNE
Sbjct: 63  GKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVELPENNE 122

Query: 93  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
           KPM QKS+ KFKI+S+KVK  +DYVPELFDEQKDQ A EQILRV+FL+PERP PALEKLK
Sbjct: 123 KPMEQKSKVKFKIMSLKVKGVMDYVPELFDEQKDQVAIEQILRVIFLDPERPSPALEKLK 182

Query: 153 RQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
           RQLADADAAV ARKKPPED GPRIIGEGLVIDEWKERRERYLARQQ EGVDSV
Sbjct: 183 RQLADADAAVEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQGEGVDSV 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567425|ref|XP_002524692.1| structural molecule, putative [Ricinus communis] gi|223536053|gb|EEF37711.1| structural molecule, putative [Ricinus communis]

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 153/173 (88%), Positives = 161/173 (93%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKFVE PENNE
Sbjct: 109 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNE 168

Query: 93  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
           KP+ QKS+ KFKI+S+KV   +DYVPELF+EQKDQ A EQILRVVFL+PERP PALEKLK
Sbjct: 169 KPVEQKSKVKFKIMSLKVNGMMDYVPELFEEQKDQIAMEQILRVVFLDPERPSPALEKLK 228

Query: 153 RQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
           RQLADADAAV ARKKPPED GPRIIGEGLVIDEWKE RERYLARQQVEGVDSV
Sbjct: 229 RQLADADAAVEARKKPPEDAGPRIIGEGLVIDEWKEGRERYLARQQVEGVDSV 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804004|ref|XP_002869886.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297315722|gb|EFH46145.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 147/173 (84%), Positives = 161/173 (93%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PENNE
Sbjct: 128 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPENNE 187

Query: 93  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
           KPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PERP PAL+KLK
Sbjct: 188 KPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERPNPALDKLK 247

Query: 153 RQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
           RQLA+ADAAV ARKKPPE+TGP+IIGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 248 RQLAEADAAVEARKKPPEETGPKIIGEGLVIDEWKERRERYLAQQQGEGADSV 300

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186769|ref|NP_001190786.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|332659055|gb|AEE84455.1| vesicle-associated membrane family protein [Arabidopsis thaliana]

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 146/173 (84%), Positives = 160/173 (92%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PENNE
Sbjct: 142 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPENNE 201

Query: 93  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
           KPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  PALEKLK
Sbjct: 202 KPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEKLK 261

Query: 153 RQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
           RQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 262 RQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415696|ref|NP_567627.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|75161506|sp|Q8VYN2.1|VAP42_ARATH RecName: Full=Vesicle-associated protein 4-2; AltName: Full=Plant VAP homolog 4-2; Short=AtPVA42; AltName: Full=VAMP-associated protein 4-2 gi|17979373|gb|AAL49912.1| putative membrane associated protein [Arabidopsis thaliana] gi|20465773|gb|AAM20375.1| putative membrane associated protein [Arabidopsis thaliana] gi|21592907|gb|AAM64857.1| putative membrane associated protein [Arabidopsis thaliana] gi|332659054|gb|AEE84454.1| vesicle-associated membrane family protein [Arabidopsis thaliana]

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 146/173 (84%), Positives = 160/173 (92%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PENNE
Sbjct: 123 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPENNE 182

Query: 93  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
           KPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  PALEKLK
Sbjct: 183 KPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEKLK 242

Query: 153 RQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
           RQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 243 RQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076792|ref|XP_002304997.1| predicted protein [Populus trichocarpa] gi|222847961|gb|EEE85508.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 154/173 (89%), Positives = 161/173 (93%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSAI+IKNT KSHVAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKF+ELPE NE
Sbjct: 61  GKQVRSAIRIKNTCKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFIELPEINE 120

Query: 93  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
           KPM QKSR KFKI+S+KVK  +DYVPELFDEQKDQ A EQILRV FLNPERP PALEKLK
Sbjct: 121 KPMEQKSRVKFKIMSLKVKGVMDYVPELFDEQKDQVAVEQILRVFFLNPERPGPALEKLK 180

Query: 153 RQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
           RQLADADAA+ ARKKPPED GPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Sbjct: 181 RQLADADAALEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503260|gb|AFK39696.1| unknown [Lotus japonicus]

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/176 (77%), Positives = 161/176 (91%)

Query: 30  FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
           +  GKQVRSAI IKNT K+HVAFKFQTTAPKSC+MRPPG IL+PGES+IATVFKFVE PE
Sbjct: 91  YEPGKQVRSAIAIKNTCKTHVAFKFQTTAPKSCYMRPPGGILSPGESIIATVFKFVEPPE 150

Query: 90  NNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALE 149
           NNEKP+ +KS+ KFKI+S+KV+ + DYVPELFDEQ+DQ A EQ+LRV+FL+PERP PA++
Sbjct: 151 NNEKPLDRKSKVKFKIMSLKVQGETDYVPELFDEQRDQVAVEQVLRVIFLDPERPSPAMD 210

Query: 150 KLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
           KLKRQLA+A+AA+ +RKKPPE+TGPR+ GEGLVIDEWKERRERYLARQQVEGVDSV
Sbjct: 211 KLKRQLAEAEAALESRKKPPEETGPRVAGEGLVIDEWKERRERYLARQQVEGVDSV 266

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495700|ref|XP_002275178.2| PREDICTED: vesicle-associated protein 4-2 [Vitis vinifera] gi|297745648|emb|CBI40859.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 159/209 (76%), Positives = 175/209 (83%), Gaps = 15/209 (7%)

Query: 12  HFYPNGAVSSLILPISST-------------FPA--GKQVRSAIKIKNTSKSHVAFKFQT 56
           + +P+G+VSS+   +  T             FP   GKQVRSAI+IKNTSKSHVAFKFQT
Sbjct: 56  NLHPSGSVSSVARSLLPTRRRLRLDPSNKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQT 115

Query: 57  TAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDY 116
           TAPKSCFMRPPGAILAPGESLIATVFKFVE PENNEKPM QKS+ KFKI+S+KVK  +DY
Sbjct: 116 TAPKSCFMRPPGAILAPGESLIATVFKFVEHPENNEKPMEQKSKVKFKIMSLKVKGPMDY 175

Query: 117 VPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRI 176
           VPE+FDE KDQ A EQILRVVFL+ ERP PAL+KLKRQLA+A+AAV ARKKPPED GPRI
Sbjct: 176 VPEMFDELKDQVAVEQILRVVFLDVERPSPALDKLKRQLAEAEAAVEARKKPPEDAGPRI 235

Query: 177 IGEGLVIDEWKERRERYLARQQVEGVDSV 205
           IGEGLVIDEWKERRERYLARQQVEGVDSV
Sbjct: 236 IGEGLVIDEWKERRERYLARQQVEGVDSV 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357144664|ref|XP_003573371.1| PREDICTED: vesicle-associated protein 4-2-like [Brachypodium distachyon]

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 144/173 (83%), Positives = 159/173 (91%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSA++IKN SKSHVAFKFQTTAPKSCFMRPPG ILAPGES+IATVFKFVE PENNE
Sbjct: 63  GKQVRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKFVEHPENNE 122

Query: 93  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
           KP+ QK +DKFKI+S+KVK  V+YVPELFDEQKDQ A EQILRVVFL+ ERP   L++LK
Sbjct: 123 KPLDQKCKDKFKIVSLKVKGPVEYVPELFDEQKDQVAVEQILRVVFLDAERPSAQLDRLK 182

Query: 153 RQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
           RQLA+A+AA+ ARKKPPEDTGPRI+GEGLVIDEWKERRERYLARQQVEGVDSV
Sbjct: 183 RQLAEAEAALEARKKPPEDTGPRIVGEGLVIDEWKERRERYLARQQVEGVDSV 235

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475961|ref|XP_003608266.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi|87240479|gb|ABD32337.1| Major sperm protein [Medicago truncatula] gi|355509321|gb|AES90463.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula]

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 144/174 (82%), Positives = 156/174 (89%), Gaps = 3/174 (1%)

Query: 33  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
           GKQVRSAI+IKNTSKS+VAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKFVE PENNE
Sbjct: 95  GKQVRSAIRIKNTSKSNVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEQPENNE 154

Query: 93  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
           KP  +KS  KFKI+S+KVK  +DYVPELFDEQKDQ A EQILRVVFL+PERP P LEKLK
Sbjct: 155 KP--EKSGLKFKIMSLKVKGSIDYVPELFDEQKDQVAVEQILRVVFLDPERPSPILEKLK 212

Query: 153 RQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVE-GVDSV 205
           RQLADADAA+  RKKP ED GP+IIGEGLVIDEWKERRERYLA+QQ +  VDSV
Sbjct: 213 RQLADADAALEERKKPAEDAGPKIIGEGLVIDEWKERRERYLAKQQGDVVVDSV 266

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
UNIPROTKB|Q6YZ10	233	P0473D02.15 "cDNA clone:001-01	0.878	0.772	0.758	7e-70
TAIR|locus:2166582	266	MAMI "membrane-associated mann	0.858	0.661	0.734	1.5e-67
TAIR|locus:2138401	287	AT4G05060 [Arabidopsis thalian	0.848	0.606	0.698	3.1e-60
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.565	0.527	0.317	8.1e-10
UNIPROTKB|Q5F419	151	VAPA "Uncharacterized protein"	0.536	0.728	0.286	1.1e-07
TAIR|locus:2101766	256	VAP27-1 "VAMP/SYNAPTOBREVIN-AS	0.565	0.453	0.28	8e-07
SGD|S000000922	244	SCS2 "Integral ER membrane pro	0.531	0.446	0.338	9.3e-07
TAIR|locus:2055557	239	PVA12 "plant VAP homolog 12" [	0.590	0.506	0.290	1.2e-06
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.585	0.502	0.287	2.3e-06
SGD|S000007228	175	SCS22 "Protein involved in reg	0.434	0.508	0.326	2.4e-06

UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 138/182 (75%), Positives = 152/182 (83%)

Query:    25 PISSTFP--AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVF 82
             P    FP   GKQVRSA+KIKN SKSHVAFKFQTTAPKSCFMRPPG ILAPGES+IATVF
Sbjct:    51 PSKLFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVF 110

Query:    83 KFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142
             KFVE PENNEKP+ QK + KFKI+S+KVK  ++YVPELFDEQK+Q A EQILRVVFL+ E
Sbjct:   111 KFVEHPENNEKPLDQKCKVKFKIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFLDAE 170

Query:   143 RPEPALEKLKRQLXXXXXXXXXRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGV 202
             R  P ++KLKRQL         RKKPPEDTGPRI+GEGLVIDEWKERRERYLARQQ+EGV
Sbjct:   171 RQTPQMDKLKRQLAEAEAALEARKKPPEDTGPRIVGEGLVIDEWKERRERYLARQQIEGV 230

Query:   203 DS 204
             DS
Sbjct:   231 DS 232

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 130/177 (73%), Positives = 150/177 (84%)

Query:    30 FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
             +  GKQVRSAIK+KNTSKSH AFKFQTTAPKSC+MRPPG +LAPGES+ ATVFKFVE PE
Sbjct:    89 YEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFATVFKFVEHPE 148

Query:    90 NNEK-PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPAL 148
             NNEK P+ QKS+ KFKI+S+KVK  V+YVPELFDEQKDQ A EQ+LRV+F++ +RP  AL
Sbjct:   149 NNEKQPLNQKSKVKFKIMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFIDADRPSAAL 208

Query:   149 EKLKRQLXXXXXXXXXRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
             EKLKRQL         RKKPP +TGPR++GEGLVIDEWKERRE+YLARQQVE VDS+
Sbjct:   209 EKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVIDEWKERREKYLARQQVESVDSL 265

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006970 "response to osmotic stress" evidence=IEP

TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 123/176 (69%), Positives = 139/176 (78%)

Query:    30 FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
             +  GKQVRSAIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFKFVE PE
Sbjct:   112 YEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVEPPE 171

Query:    90 NNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALE 149
             NNEKPM QKS  KFKI+S+K+K   DY+PELF+EQKD  + EQ++RVVFL+PE P   +E
Sbjct:   172 NNEKPMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPNSMME 231

Query:   150 KLKRQLXXXXXXXXXRKKPPED-TGPRIIGEGLVIDEWKERRERYLARQQVEGVDS 204
             KLK QL         RKK  E   GP+ IGEGLVIDEWK+RRERYLA+QQ  GVD+
Sbjct:   232 KLKSQLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ-GGVDA 286

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 39/123 (31%), Positives = 63/123 (51%)

Query:    30 FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
             F   KQ    +K+ N ++++VAFK +TT+PK  F+RP   ++ P +S I  V     L  
Sbjct:    21 FELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRV----TLQA 76

Query:    90 NNEKPMYQKSRDKFKIISMKVK--ADVDYVPE-LFDEQKDQTAAEQILRVVFLNPERPEP 146
               E P   + +DKF + S  V    DVD +P+  F +   +T  E  L+V ++ P   + 
Sbjct:    77 QREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITPSTTQR 136

Query:   147 ALE 149
             + E
Sbjct:   137 SSE 139

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 33/115 (28%), Positives = 57/115 (49%)

Query:    36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
             V + +K++N S   V FK +TTAP+   +RP   I+ PG S+I +V     L   +  P 
Sbjct:    32 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSSVIVSVM----LQPFDYDPN 87

Query:    96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEK 150
              +KS+ KF + ++    ++  +  ++ E K     +  LR VF  P   +  + K
Sbjct:    88 -EKSKHKFMVQTIYAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNENDKLVSK 141

GO:0005198 "structural molecule activity" evidence=IEA

TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 35/125 (28%), Positives = 59/125 (47%)

Query:    25 PISSTFP--AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVF 82
             P+   FP    KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P     +T  
Sbjct:    27 PLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCE 82

Query:    83 KFVELPENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL 139
               V +    E P   + +DKF +  +     V   +  PE+F ++      E  LRV ++
Sbjct:    83 VLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYV 142

Query:   140 NPERP 144
              P RP
Sbjct:   143 APPRP 147

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

SGD|S000000922 SCS2 "Integral ER membrane protein, regulates phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 128 (50.1 bits), Expect = 9.3e-07, P = 9.3e-07
 Identities = 40/118 (33%), Positives = 59/118 (50%)

Query:    31 PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 90
             P  +Q      I N S   +AFK +TTAPK   +RP  A++APGE++   V  F+ L E 
Sbjct:    16 PLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FLGLTE- 73

Query:    91 NEKPMYQKSRDKFKIISMKV------KADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142
              E     K RDKF +I++        KA  D   +L  E K Q  +++I     ++P+
Sbjct:    74 -EPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISKKIKVKYLISPD 130

GO:0005634 "nucleus" evidence=IEA

GO:0042992 "negative regulation of transcription factor import into nucleus" evidence=IMP;IPI

GO:0031965 "nuclear membrane" evidence=IEA;IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0033149 "FFAT motif binding" evidence=IMP;IPI

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IGI;IMP

GO:0006348 "chromatin silencing at telomere" evidence=IGI;IMP

GO:0048309 "endoplasmic reticulum inheritance" evidence=IGI;IMP

GO:0005934 "cellular bud tip" evidence=IDA

GO:0090158 "endoplasmic reticulum membrane organization" evidence=IGI

GO:0060304 "regulation of phosphatidylinositol dephosphorylation" evidence=IGI

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0032377 "regulation of intracellular lipid transport" evidence=IMP

TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 38/131 (29%), Positives = 62/131 (47%)

Query:    25 PISSTFP--AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVF 82
             P+   FP    KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P  S  + V 
Sbjct:    10 PVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSS--SEVL 67

Query:    83 KFVELPENNEKPMYQKSRDKFK---IISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL 139
               V +    E P   + +DKF    +++       D   E+F ++      E  LRVV++
Sbjct:    68 --VTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYV 125

Query:   140 NPERP-EPALE 149
              P RP  P  E
Sbjct:   126 APPRPPSPVRE 136

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006605 "protein targeting" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 38/132 (28%), Positives = 66/132 (50%)

Query:    23 ILPISSTFP--AGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIA 79
             I P    FP    KQ   ++++ N T+   VAFK +TT P+   +RP   ++ PG+S   
Sbjct:     9 IHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNV 68

Query:    80 TVFKFVELPENNEKPMYQKSRDKFKIISMKVK---ADVDYVPELFDEQKDQTAAEQILRV 136
             TV     +    E P+  + +DKF + ++ V       + + E+F+++  +   +  LRV
Sbjct:    69 TV----TMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRV 124

Query:   137 VFL--NPERPEP 146
             V++  NP  P P
Sbjct:   125 VYIPANPPSPVP 136

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

SGD|S000007228 SCS22 "Protein involved in regulation of phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 30/92 (32%), Positives = 48/92 (52%)

Query:    23 ILPISSTF--PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 80
             I+P    F  P  KQ    IK++N  +  V FK +T+AP    +RP  AI+   ES+   
Sbjct:     3 IVPEKLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVNVQ 62

Query:    81 VFKFVELPENNEKPMYQKSRDKFKIISMKVKA 112
             +  F+ LP++       + RDKF I+++ + A
Sbjct:    63 IV-FLGLPKSTADDEMDQKRDKFLIVTLPIPA 93

GO:0016020 "membrane" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IGI

GO:0006348 "chromatin silencing at telomere" evidence=IGI;IDA;IMP

GO:0005575 "cellular_component" evidence=ND

GO:0090158 "endoplasmic reticulum membrane organization" evidence=IGI

GO:0003674 "molecular_function" evidence=ND

GO:0060304 "regulation of phosphatidylinositol dephosphorylation" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	3e-21
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	1e-05

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 84.0 bits (208), Expect = 3e-21
 Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 29  TFPA--GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVE 86
            F A   KQ  S + + N S   VAFK +TT PK   +RP   IL PGES+  T+ +   
Sbjct: 11  FFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESVTITITR--- 67

Query: 87  LPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 127
            P + E    +K  DKF I   +   D     E F      
Sbjct: 68  QPFDKEPGDPKK--DKFVIQYTEAPDDAKDAKEAFKRAWKN 106

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 31  PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 90
           P   + +    ++N S   V FK +TTAPK   +RP   ++ P  ++   V   +     
Sbjct: 14  PLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEV---ILQGLT 70

Query: 91  NEKPMYQKSRDKFKIISMKVKAD 113
            E     K RDKF I S +    
Sbjct: 71  EEPAPDFKCRDKFLIQSYRFDWR 93

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG0439	218	consensus VAMP-associated protein involved in inos	99.96
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.93
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	99.86
PF14874	102	PapD-like: Flagellar-associated PapD-like	98.03
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	96.12
PF14646	426	MYCBPAP: MYCBP-associated protein family	94.58
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	92.69
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	89.99
PF06030	121	DUF916: Bacterial protein of unknown function (DUF	88.43
PRK09918	230	putative fimbrial chaperone protein; Provisional	87.07
PRK15249	253	fimbrial chaperone protein StbB; Provisional	85.77
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	84.09

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.8e-29  Score=212.18  Aligned_cols=176  Identities=35%  Similarity=0.475  Sum_probs=152.4

Q ss_pred             CeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEE
Q 028668           25 PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK  104 (205)
Q Consensus        25 pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFL  104 (205)
                      +|.|.+++.+++++.|+|+|+++.++|||||||+|++|+||||.|+|.||+++.|.|.+   +|. ...|.+++|+|||+
T Consensus        16 ~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~---q~~-~~~P~d~~~r~kF~   91 (218)
T KOG0439|consen   16 ELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTH---QPF-EKSPPDFKSRHKFL   91 (218)
T ss_pred             eEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEe---ccC-ccCchhhcccceEE
Confidence            79999999999999999999999999999999999999999999999999999999998   673 34577888999999


Q ss_pred             EEEEEeCCC-CCChhhhhhccC--CCcceEEEeEEEEeCCCCCChhHHHH---HHhhhhHHHHHHhhCCCCCCC---CCc
Q 028668          105 IISMKVKAD-VDYVPELFDEQK--DQTAAEQILRVVFLNPERPEPALEKL---KRQLADADAAVAARKKPPEDT---GPR  175 (205)
Q Consensus       105 Iqs~~v~~~-~d~~~elfk~~~--~~~i~e~KLrV~f~~p~~ps~~~e~l---~~~l~~a~~~~~~~~~~~~~~---~~~  175 (205)
                      ||++.++.+ .....++|+..+  +..+.+.+++|.|+.|..+....+..   .++.....+...+........   .+.
T Consensus        92 v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (218)
T KOG0439|consen   92 IQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEATKEASDGEVCVKSK  171 (218)
T ss_pred             EEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCccccccccccccCcccccchhh
Confidence            999999986 567899999988  78889999999999987776655555   556677777777777776543   577


Q ss_pred             eeccceeechh------------------hHhHHHHHHHhhhcccCC
Q 028668          176 IIGEGLVIDEW------------------KERRERYLARQQVEGVDS  204 (205)
Q Consensus       176 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~  204 (205)
                      ..++++++++|                  +++++++++.+|.+...|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (218)
T KOG0439|consen  172 EFGEKLELKEELKAFKLKANKVDEERLLKKKKEGRLLAELQAELVIS  218 (218)
T ss_pred             hhhccccchhhhhccccccccccccchhhhhhhHHHHHhhhhhhccC
Confidence            88999999999                  899999999999876543

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.93  E-value=2.7e-26  Score=195.60  Aligned_cols=112  Identities=22%  Similarity=0.310  Sum_probs=103.3

Q ss_pred             eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEE
Q 028668           26 ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKI  105 (205)
Q Consensus        26 L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFLI  105 (205)
                      +.|.-++...+++.+-|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+|   +++..++..+.+|+|||||
T Consensus         9 ~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVil---q~l~eEpapdfKCrdKFLi   85 (242)
T COG5066           9 TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVIL---QGLTEEPAPDFKCRDKFLI   85 (242)
T ss_pred             eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEe---eccccCCCCCccccceeEE
Confidence            5666678899999999999999999999999999999999999999999999999999   7888888889999999999


Q ss_pred             EEEEeCCCC--CChhhhhhccCCCcceEEEeEEEEeC
Q 028668          106 ISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFLN  140 (205)
Q Consensus       106 qs~~v~~~~--d~~~elfk~~~~~~i~e~KLrV~f~~  140 (205)
                      |++..+.+.  .+..++|+...+.-|+++|++|+|..
T Consensus        86 qs~~~~~~l~g~d~ad~wt~~sk~~i~~rkIrcvyse  122 (242)
T COG5066          86 QSYRFDWRLSGSDFADHWTSSSKKPIWTRKIRCVYSE  122 (242)
T ss_pred             EEeccChhhccchHHHHHHhhccccchhhheeEEeec
Confidence            999998654  45699999999888999999999984

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=99.86  E-value=4.5e-21  Score=144.53  Aligned_cols=95  Identities=31%  Similarity=0.422  Sum_probs=75.3

Q ss_pred             eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEE
Q 028668           26 ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKI  105 (205)
Q Consensus        26 L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFLI  105 (205)
                      +.|..++++..++.|+|+|+|+.+||||||||+|.+|+|+|+.|+|.||+++.|.|++   ++..... . ...+|||+|
T Consensus        10 i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~---~~~~~~~-~-~~~~dkf~I   84 (109)
T PF00635_consen   10 IFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITF---QPFDFEP-S-NKKKDKFLI   84 (109)
T ss_dssp             EEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTT-T-STSSEEEEE
T ss_pred             eEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEE---EecccCC-C-CCCCCEEEE
Confidence            7899999999999999999999999999999999999999999999999999999999   5644332 1 223999999


Q ss_pred             EEEEeCCCCC----ChhhhhhccC
Q 028668          106 ISMKVKADVD----YVPELFDEQK  125 (205)
Q Consensus       106 qs~~v~~~~d----~~~elfk~~~  125 (205)
                      +++.++++..    ....+|++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~  108 (109)
T PF00635_consen   85 QSIVVPDNATDPKKDFKQIWKNGK  108 (109)
T ss_dssp             EEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred             EEEEcCCCccchhhhHHHHHhccC
Confidence            9999987753    3566777654

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=98.03  E-value=4.7e-05  Score=56.78  Aligned_cols=58  Identities=24%  Similarity=0.352  Sum_probs=50.0

Q ss_pred             eeee-cCCCCeEEEEEEEEcCCCCeEEEEEeeCC--CcceeecCCceeeCCCCeEEEEEEe
Q 028668           26 ISST-FPAGKQVRSAIKIKNTSKSHVAFKFQTTA--PKSCFMRPPGAILAPGESLIATVFK   83 (205)
Q Consensus        26 L~F~-~e~~k~~s~~LtLtN~S~~~VAFKVKTTa--Pk~Y~VRP~~GiI~Pges~~I~Vtl   83 (205)
                      |.|- ...+...+..|+|+|.|..+..|+|+...  ...|.|.|..|.|+||++..+.|++
T Consensus        11 ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~   71 (102)
T PF14874_consen   11 LDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTF   71 (102)
T ss_pred             EEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEE
Confidence            4443 34778889999999999999999998643  5689999999999999999999999

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=96.12  E-value=0.092  Score=40.33  Aligned_cols=61  Identities=23%  Similarity=0.336  Sum_probs=50.7

Q ss_pred             ceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCC----C-----cceeecCCceeeCCCCeEEEEEEe
Q 028668           22 LILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTA----P-----KSCFMRPPGAILAPGESLIATVFK   83 (205)
Q Consensus        22 ~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTa----P-----k~Y~VRP~~GiI~Pges~~I~Vtl   83 (205)
                      .|.|.++.+..++ .+..++|+|.++.++.+.+....    +     ..|.|-|+.-.|+||++..|.|..
T Consensus         3 ~i~~trii~~~~~-~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~   72 (122)
T PF00345_consen    3 QISPTRIIFNESQ-RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR   72 (122)
T ss_dssp             EESSSEEEEETTS-SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred             EEccEEEEEeCCC-CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence            3667778888755 47899999999999999988653    1     268999999999999999999943

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PF14646 MYCBPAP: MYCBP-associated protein family

Probab=94.58  E-value=1.4  Score=41.39  Aligned_cols=116  Identities=13%  Similarity=0.263  Sum_probs=78.8

Q ss_pred             cceeCeeeecCCCCeEEEEEE-EEcCCCCeEEEEEeeCC------------CcceeecCCceeeCCCCeEEEEEEeeccC
Q 028668           21 SLILPISSTFPAGKQVRSAIK-IKNTSKSHVAFKFQTTA------------PKSCFMRPPGAILAPGESLIATVFKFVEL   87 (205)
Q Consensus        21 ~~i~pL~F~~e~~k~~s~~Lt-LtN~S~~~VAFKVKTTa------------Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~   87 (205)
                      ....-+.|.-.++......|. |.|.+...|-|..+--.            ...|......|+|.||++..+.|++   +
T Consensus       234 ~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F---~  310 (426)
T PF14646_consen  234 SISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMF---K  310 (426)
T ss_pred             CcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEE---e
Confidence            344568999999998888888 99999999999976432            4678999999999999999999998   4


Q ss_pred             CCCCCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCCCChhHHHHHHhhhh
Q 028668           88 PENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLAD  157 (205)
Q Consensus        88 p~~~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p~~ps~~~e~l~~~l~~  157 (205)
                      |...     ...++...+..-+.         +|.    ......+|..+-+++..-....+.+++.|++
T Consensus       311 s~~~-----Gif~E~W~L~t~P~---------l~~----~~~l~v~L~G~~~~~~~~~~~~~~~~~~l~~  362 (426)
T PF14646_consen  311 SRKV-----GIFKERWELRTFPP---------LFG----GASLTVRLHGVCTPPDEYLDKRKMLEEELAR  362 (426)
T ss_pred             CCCc-----eEEEEEEEEEEecc---------ccC----CCceEEEEEEEEcCchHhHHHHHHHHHHHHH
Confidence            5321     22345555554322         222    1124567777766664444455555555533

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=92.69  E-value=0.5  Score=30.84  Aligned_cols=43  Identities=26%  Similarity=0.171  Sum_probs=34.5

Q ss_pred             EEEEcCCCCeEE-EEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668           40 IKIKNTSKSHVA-FKFQTTAPKSCFMRPPGAILAPGESLIATVFK   83 (205)
Q Consensus        40 LtLtN~S~~~VA-FKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl   83 (205)
                      ++++|.++.++. .+|+|+ =+-..+..+...|.||++..|.|++
T Consensus         2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~y   45 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVTY   45 (45)
T ss_pred             EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEEC
Confidence            689999987654 566654 6777888888999999999999873

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=89.99  E-value=1  Score=34.44  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=34.2

Q ss_pred             EEEEEEEcCCCCeEEEEEeeCCCcceee-cCCce-eeCCCCeEEEEEEee
Q 028668           37 RSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGA-ILAPGESLIATVFKF   84 (205)
Q Consensus        37 s~~LtLtN~S~~~VAFKVKTTaPk~Y~V-RP~~G-iI~Pges~~I~Vtl~   84 (205)
                      .-+|+|.|.+.++..|.|+...+..+.+ .+... .|.||++..+.|.+.
T Consensus        34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~   83 (118)
T PF11614_consen   34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT   83 (118)
T ss_dssp             EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred             EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence            3789999999999999999988888888 66444 599999999888873

>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function

Probab=88.43  E-value=6  Score=31.12  Aligned_cols=66  Identities=18%  Similarity=0.221  Sum_probs=46.6

Q ss_pred             ccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEe-----eCCCcc--eeec------------------CCceeeC
Q 028668           18 AVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQ-----TTAPKS--CFMR------------------PPGAILA   72 (205)
Q Consensus        18 ~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVK-----TTaPk~--Y~VR------------------P~~GiI~   72 (205)
                      .+.-......+...+++..+-.++|+|.|++.+.|++.     |+..+.  |.-.                  |..-.|+
T Consensus        11 Q~~~~~~YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~   90 (121)
T PF06030_consen   11 QIDKNVSYFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLP   90 (121)
T ss_pred             ccCCCCCeEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEEC
Confidence            33444555677889999999999999999999999986     333332  2111                  2224678


Q ss_pred             CCCeEEEEEEe
Q 028668           73 PGESLIATVFK   83 (205)
Q Consensus        73 Pges~~I~Vtl   83 (205)
                      |+++..|.+++
T Consensus        91 ~~~sk~V~~~i  101 (121)
T PF06030_consen   91 PNESKTVTFTI  101 (121)
T ss_pred             CCCEEEEEEEE
Confidence            88888877776

>PRK09918 putative fimbrial chaperone protein; Provisional

Probab=87.07  E-value=6.3  Score=34.14  Aligned_cols=108  Identities=16%  Similarity=0.132  Sum_probs=69.1

Q ss_pred             ccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCC-----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCC
Q 028668           20 SSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAP-----KSCFMRPPGAILAPGESLIATVFKFVELPENNEKP   94 (205)
Q Consensus        20 ~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaP-----k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p   94 (205)
                      ...+.+.++.|.. ++...+++|+|.++.++.........     .-|.|-|+.-.|+||++..|.|.+.   .   ..|
T Consensus        25 ~v~l~~tRvi~~~-~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~---~---~lp   97 (230)
T PRK09918         25 GMVPETSVVIVEE-SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILK---S---GSP   97 (230)
T ss_pred             eEEEccEEEEEEC-CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEEC---C---CCC
Confidence            4556777887775 55778999999998876665543211     2599999999999999999999872   1   123


Q ss_pred             CCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCC
Q 028668           95 MYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE  142 (205)
Q Consensus        95 ~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p~  142 (205)
                      .+.  ..-|.+....++...+.      +..=+.....++++-|-+..
T Consensus        98 ~dr--Es~f~l~v~~IP~~~~~------~~~l~ia~r~~iklfyRP~~  137 (230)
T PRK09918         98 LNT--EHLLRVSFEGVPPKPGG------KNKVVMPIRQDLPVLIQPAA  137 (230)
T ss_pred             CCe--eEEEEEEEEEcCCCCCC------CCEEEEEEEeEEEEEEeCCC
Confidence            322  23577777777754321      11112223556676665543

>PRK15249 fimbrial chaperone protein StbB; Provisional

Probab=85.77  E-value=21  Score=31.40  Aligned_cols=87  Identities=16%  Similarity=0.202  Sum_probs=59.0

Q ss_pred             ccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCC------C-----cceeecCCceeeCCCCeEEEEEEeeccCC
Q 028668           20 SSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTA------P-----KSCFMRPPGAILAPGESLIATVFKFVELP   88 (205)
Q Consensus        20 ~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTa------P-----k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p   88 (205)
                      ...|.+.++.|..++ ...+|+|.|.++.++.-..-+..      |     .-|.|-|+.--|+||+...|.|...   .
T Consensus        29 ~l~l~~TRviy~~~~-~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~---~  104 (253)
T PRK15249         29 SVTILGSRIIYPSTA-SSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN---N  104 (253)
T ss_pred             EEEeCceEEEEeCCC-cceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc---C
Confidence            356788899997665 67889999999876554442211      1     1399999999999999999999972   1


Q ss_pred             CCCCCCCCCCCCceEEEEEEEeCCC
Q 028668           89 ENNEKPMYQKSRDKFKIISMKVKAD  113 (205)
Q Consensus        89 ~~~e~p~~~~~kDKFLIqs~~v~~~  113 (205)
                       ....|.+..  --|.+....+++.
T Consensus       105 -~~~lP~DRE--Slf~lnv~eIP~~  126 (253)
T PRK15249        105 -TKKLPQDRE--SVFWFNVLQVPPT  126 (253)
T ss_pred             -CCCCCCCce--EEEEEEeeecCCC
Confidence             111233322  3466666666653

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.09  E-value=2.7  Score=31.87  Aligned_cols=51  Identities=18%  Similarity=0.288  Sum_probs=32.8

Q ss_pred             CCeEEEEEEEEcCCCCeEEEEEeeC-----C---Ccceee-------------cCCceeeCCCCeEEEEEEe
Q 028668           33 GKQVRSAIKIKNTSKSHVAFKFQTT-----A---PKSCFM-------------RPPGAILAPGESLIATVFK   83 (205)
Q Consensus        33 ~k~~s~~LtLtN~S~~~VAFKVKTT-----a---Pk~Y~V-------------RP~~GiI~Pges~~I~Vtl   83 (205)
                      +...+.+|+|+|.++..+.|++.-.     .   .+.|..             -|..=.|.||++..|.|++
T Consensus         7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti   78 (112)
T PF06280_consen    7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTI   78 (112)
T ss_dssp             -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEE
T ss_pred             CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEE
Confidence            4557889999999999999997644     1   122221             1223368999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
3ikk_A	127	Crystal Structure Analysis Of Msp Domain Length = 1		7e-05
2rr3_A	130	Solution Structure Of The Complex Between Human Vap		2e-04
2cri_A	147	Solution Structure Of The Msp Domain Of Mouse Vamp-		4e-04
1z9o_A	128	1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp		7e-04

>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 31  PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 90
           P    V + +K+ N +  +V FK +TTAP+   +RP   I+  G S+  +V     L   
Sbjct: 23  PFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPF 78
Query: 91  NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 138
           +  P  +KS+ KF + SM    D   +  ++ E K +   +  LR VF
Sbjct: 79  DYDP-NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 125

>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 31  PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 90
           P    V + +K++N S   V FK +TTAP+   +RP   I+ PG ++  +V     L   
Sbjct: 23  PFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----LQPF 78
Query: 91  NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142
           +  P  +KS+ KF + ++    +   +  ++ E K     +  LR VF  P 
Sbjct: 79  DYDP-NEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPN 129

>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 36  VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
           V + +K++N S   V FK +TTAP+   +RP   I+ PG  +  +V     L   +  P 
Sbjct: 33  VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM----LQPFDYDP- 87
Query: 96  YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142
            +KS+ KF + ++    ++  +  ++ E K     +  LR VF  P 
Sbjct: 88  NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134

>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 31  PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 90
           P    V + +K++N S   V FK +TTAP+   +RP   ++ PG  +  +V     L   
Sbjct: 24  PFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM----LQPF 79
Query: 91  NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 138
           +  P  +KS+ KF + ++    ++  +  ++ E K     +  LR VF
Sbjct: 80  DYDP-NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVF 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
2cri_A	147	Vesicle-associated membrane protein-associated pro	3e-26
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	1e-24
1z9l_A	128	Vesicle-associated membrane protein-associated pro	2e-24
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	4e-17
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	3e-10
1row_A	109	SSP-19, MSP-domain protein like family member; bet	1e-07

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score = 97.5 bits (242), Expect = 3e-26
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 29  TFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP 88
             P    V + +K++N S   V FK +TTAP+   +RP   I+ PG            + 
Sbjct: 26  KGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSI-----VTVSVML 80

Query: 89  ENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPAL 148
           +  +    +KS+ KF + ++    ++  +  ++ E K     +  LR VF  P   +   
Sbjct: 81  QPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNENDKLN 140

Query: 149 EKLK 152
           +   
Sbjct: 141 DSGP 144

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score = 93.2 bits (231), Expect = 1e-24
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 12/121 (9%)

Query: 30  FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
                + ++ I + N +K+ VAFK +TTAP+   ++P  +   PG S        +++  
Sbjct: 31  SIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS--------IDIIV 82

Query: 90  NNEKPMYQKSRDKFKIISMKVKADVDYVP----ELFDEQKDQTAAEQILRVVFLNPERPE 145
           +    +   ++D+F I++ +++      P    + + E       E  LR   +   +P 
Sbjct: 83  SPHGGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPN 142

Query: 146 P 146
            
Sbjct: 143 S 143

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score = 92.4 bits (229), Expect = 2e-24
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 29  TFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP 88
             P    V + +K++N S   V FK +TTAP+   +RP   ++ PG  +  +V       
Sbjct: 22  KGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM-----L 76

Query: 89  ENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 138
           +  +    +KS+ KF + ++    ++  +  ++ E K     +  LR VF
Sbjct: 77  QPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVF 126

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 73.0 bits (179), Expect = 4e-17
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 29  TFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP 88
             P   +    IKI N     + +  +TT  +   + PP  +L P E ++  V       
Sbjct: 20  NAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNA 79

Query: 89  ENNEKPMYQKSRDKFKIISMKV--KADVDYVPELFDEQKDQTAAEQILRVVF 138
              +      + D+  I        A   +  E F  Q D     + L + +
Sbjct: 80  ATED-----LNNDRITIEWTNTPDGAAKQFRREWF--QGDGMVRRKNLPIEY 124

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 54.5 bits (131), Expect = 3e-10
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 25  PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKF 84
           P +  +PA     S   I + S S +AFK +++  +   +RP    +         + + 
Sbjct: 15  PPTGNYPA-TGGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR- 72

Query: 85  VELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 127
                    P      DK  I   +V A+       F     Q
Sbjct: 73  --------LPG-PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ 106

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 11/103 (10%)

Query: 25  PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKF 84
           P + T PA   V S  K+ N     + FK +++      + P    + P  S    + + 
Sbjct: 7   PPACTVPA-AGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR- 64

Query: 85  VELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 127
                        K  DK  +      AD       F      
Sbjct: 65  --------TAGAPK-EDKLVVHFASAPADATDAQAAFVAVAPA 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
2cri_A	147	Vesicle-associated membrane protein-associated pro	100.0
1z9l_A	128	Vesicle-associated membrane protein-associated pro	100.0
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	99.97
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.96
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.94
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.94
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	98.23
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	97.65
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	97.62
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	96.97
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	94.9
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	94.22
1yew_A	382	Particulate methane monooxygenase, B subunit; memb	87.26
3q48_A	257	Chaperone CUPB2; IG fold, periplasmic chaperone; 2	86.15
3rfr_A	419	PMOB; membrane, oxidoreductase; 2.68A {Methylocyst	81.44

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=100.00  E-value=1.1e-32  Score=221.66  Aligned_cols=119  Identities=26%  Similarity=0.440  Sum_probs=107.0

Q ss_pred             cceeC---eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 028668           21 SLILP---ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ   97 (205)
Q Consensus        21 ~~i~p---L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~   97 (205)
                      ..|.|   |.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+|   ++....  +++
T Consensus        15 L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~~--p~~   89 (147)
T 2cri_A           15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDYD--PNE   89 (147)
T ss_dssp             SEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCCC--TTC
T ss_pred             EEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcCC--ccc
Confidence            34555   8899999999999999999999999999999999999999999999999999999999   675432  357


Q ss_pred             CCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCCC
Q 028668           98 KSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERP  144 (205)
Q Consensus        98 ~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p~~p  144 (205)
                      +|+|||+||++.++++.+++.++|++..+..++++||||+|+.|...
T Consensus        90 ~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~~  136 (147)
T 2cri_A           90 KSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNEN  136 (147)
T ss_dssp             CSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred             cCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCCC
Confidence            89999999999999887778999999988899999999999887543

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=100.00  E-value=2e-32  Score=214.79  Aligned_cols=110  Identities=25%  Similarity=0.435  Sum_probs=101.5

Q ss_pred             CeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEE
Q 028668           25 PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK  104 (205)
Q Consensus        25 pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFL  104 (205)
                      .|.|.+++++++++.|+|+|+|+++||||||||+|++|+|||+.|+|.||++++|.|++   ++....  ++++|+|||+
T Consensus        18 ~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~--p~~~~~dkF~   92 (128)
T 1z9l_A           18 DLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD--PNEKSKHKFM   92 (128)
T ss_dssp             EEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC--TTCCCCCEEE
T ss_pred             eEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC--cccccCCEEE
Confidence            38999999999999999999999999999999999999999999999999999999999   675432  3568999999


Q ss_pred             EEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEe
Q 028668          105 IISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL  139 (205)
Q Consensus       105 Iqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~  139 (205)
                      ||++.++++.+++.++|++..+..++++||||+|.
T Consensus        93 V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~  127 (128)
T 1z9l_A           93 VQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE  127 (128)
T ss_dssp             EEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred             EEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence            99999999877789999999888999999999995

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=99.97  E-value=6.4e-32  Score=218.86  Aligned_cols=120  Identities=22%  Similarity=0.281  Sum_probs=104.4

Q ss_pred             cceeC---eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 028668           21 SLILP---ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ   97 (205)
Q Consensus        21 ~~i~p---L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~   97 (205)
                      ..|.|   |.|.++++++++|.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+|   ++..     ..
T Consensus        19 L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~-----~~   90 (152)
T 1wic_A           19 LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGL-----TV   90 (152)
T ss_dssp             BCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSS-----CC
T ss_pred             EEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCcc-----cC
Confidence            44444   7899999999999999999999999999999999999999999999999999999999   5652     13


Q ss_pred             CCCceEEEEEEEeC--CCC--CChhhhhhccCCCcceEEEeEEEEeCCC-CCChhH
Q 028668           98 KSRDKFKIISMKVK--ADV--DYVPELFDEQKDQTAAEQILRVVFLNPE-RPEPAL  148 (205)
Q Consensus        98 ~~kDKFLIqs~~v~--~~~--d~~~elfk~~~~~~i~e~KLrV~f~~p~-~ps~~~  148 (205)
                      +++|||+||++.++  ++.  +++.++|++..+..++++||+|+|+++. ++|+++
T Consensus        91 ~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~  146 (152)
T 1wic_A           91 SAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLML  146 (152)
T ss_dssp             CSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCC
T ss_pred             CCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCccc
Confidence            78999999999998  443  3578999999888999999999999864 445554

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.96  E-value=4.1e-28  Score=190.71  Aligned_cols=109  Identities=17%  Similarity=0.183  Sum_probs=93.5

Q ss_pred             CeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEE
Q 028668           25 PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK  104 (205)
Q Consensus        25 pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFL  104 (205)
                      .|.|.++++++++|.|+|+|+|+++||||||||+|++|+|||++|+|.||+++.|.|+|   ++.... +. ...+|||+
T Consensus        16 ~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~-~~-~~~kDKf~   90 (126)
T 1msp_A           16 KIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAA-TE-DLNNDRIT   90 (126)
T ss_dssp             CEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGG-GS-CCSSCEEE
T ss_pred             eEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCC-CC-ccCCCEEE
Confidence            58999999999999999999999999999999999999999999999999999999999   675443 22 34599999


Q ss_pred             EEEEEeCCCCC-ChhhhhhccCCCcceEEEeEEEEe
Q 028668          105 IISMKVKADVD-YVPELFDEQKDQTAAEQILRVVFL  139 (205)
Q Consensus       105 Iqs~~v~~~~d-~~~elfk~~~~~~i~e~KLrV~f~  139 (205)
                      ||++.++++.+ .....|....+ .+..++|+|.|.
T Consensus        91 Vq~~~~p~~~~~~~~~~wf~~d~-~~~~k~L~V~Yn  125 (126)
T 1msp_A           91 IEWTNTPDGAAKQFRREWFQGDG-MVRRKNLPIEYN  125 (126)
T ss_dssp             EEEEECCTTCCSSCCTHHHHSSS-CCEEEEEEEEEE
T ss_pred             EEEEECCCCcchhhhHHhhcCCC-ceEEEEEEEEec
Confidence            99999998863 34555555444 578999999996

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.94  E-value=1.5e-26  Score=178.43  Aligned_cols=102  Identities=15%  Similarity=0.144  Sum_probs=86.6

Q ss_pred             cceeC--eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCC
Q 028668           21 SLILP--ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQK   98 (205)
Q Consensus        21 ~~i~p--L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~   98 (205)
                      ..|.|  |.|.++   ..++.|+|+|+|+.+||||||||+|++|||||+.|+|+||++++|.|++   |++       ..
T Consensus         3 L~i~P~~l~F~~~---~~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~~   69 (109)
T 1row_A            3 LTADPPACTVPAA---GVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------AP   69 (109)
T ss_dssp             CEEESSSEEEETT---CEEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------CC
T ss_pred             EEEECCEeEEeCC---CCeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------CC
Confidence            34555  677766   3479999999999999999999999999999999999999999999999   553       24


Q ss_pred             CCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEE
Q 028668           99 SRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  137 (205)
Q Consensus        99 ~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~  137 (205)
                      ++|||+||++.++++..+..++|++....  ++.+|++.
T Consensus        70 ~~dKflvq~~~~~~~~~d~~~~fk~~~~~--g~~~i~l~  106 (109)
T 1row_A           70 KEDKLVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS  106 (109)
T ss_dssp             EEEEEEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred             CCCEEEEEEEECCCCCCCHHHHhhcCCCC--ceEEEEEE
Confidence            69999999999998877789999997653  56677664

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.94  E-value=8e-26  Score=176.52  Aligned_cols=103  Identities=21%  Similarity=0.276  Sum_probs=87.9

Q ss_pred             ceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCc
Q 028668           22 LILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRD  101 (205)
Q Consensus        22 ~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kD  101 (205)
                      .+.|..+.|++. ..++.|+|+|+|+.+||||||||+|+.|||||+.|+|+||++++|.|++   +++       ..++|
T Consensus        12 ~~~p~~l~F~~~-gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~-------~~k~D   80 (116)
T 1m1s_A           12 NVDPPTGNYPAT-GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG-------PPKED   80 (116)
T ss_dssp             EEESSEEEECTT-CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC-------CSCEE
T ss_pred             ecCCCeEEEecC-CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC-------CCCCC
Confidence            355655556554 4699999999999999999999999999999999999999999999999   554       14699


Q ss_pred             eEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEE
Q 028668          102 KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  137 (205)
Q Consensus       102 KFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~  137 (205)
                      ||+||++.++++..++.++|++...  .++.+|++.
T Consensus        81 KflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~  114 (116)
T 1m1s_A           81 KIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI  114 (116)
T ss_dssp             EEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred             EEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence            9999999999877778999999765  477888764

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=1.2e-05  Score=61.30  Aligned_cols=66  Identities=18%  Similarity=0.232  Sum_probs=53.7

Q ss_pred             cccceeC--eeeecC-CCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCC
Q 028668           19 VSSLILP--ISSTFP-AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE   89 (205)
Q Consensus        19 ~~~~i~p--L~F~~e-~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~   89 (205)
                      .+.+-+|  |.|..- .+...+..+.|+|.++.++.|++++.+  -|.|.|+.|.|.||+++.|.|+.   .|.
T Consensus        23 ~~~l~~p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F---~P~   91 (122)
T 2ys4_A           23 RAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEF---EPQ   91 (122)
T ss_dssp             CCCCCCCSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEE---CCS
T ss_pred             CcEECCCCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEE---EcC
Confidence            3444445  445443 566788999999999999999999854  69999999999999999999999   564

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=97.65  E-value=0.00014  Score=57.24  Aligned_cols=60  Identities=13%  Similarity=0.148  Sum_probs=50.7

Q ss_pred             Ceeee-cCCCCeEEEEEEEEcCCCCeEEEEEeeC------CCcceeecCCceeeCCCCeEEEEEEee
Q 028668           25 PISST-FPAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKF   84 (205)
Q Consensus        25 pL~F~-~e~~k~~s~~LtLtN~S~~~VAFKVKTT------aPk~Y~VRP~~GiI~Pges~~I~Vtl~   84 (205)
                      .+.|- ..+++..+++|+|+|++.-+..|++...      .+.-+.|.|+.|.|.||+++.|.|+++
T Consensus        33 ~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~   99 (140)
T 3qbt_B           33 EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY   99 (140)
T ss_dssp             EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred             eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence            45565 4478889999999999999999999853      234588999999999999999999995

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.62  E-value=0.0001  Score=54.44  Aligned_cols=58  Identities=10%  Similarity=0.119  Sum_probs=48.5

Q ss_pred             eeeecC-CCCeEEEEEEEEcCCCCeEEEEEeeCC-C--cceeecCCceeeCCCCeEEEEEEe
Q 028668           26 ISSTFP-AGKQVRSAIKIKNTSKSHVAFKFQTTA-P--KSCFMRPPGAILAPGESLIATVFK   83 (205)
Q Consensus        26 L~F~~e-~~k~~s~~LtLtN~S~~~VAFKVKTTa-P--k~Y~VRP~~GiI~Pges~~I~Vtl   83 (205)
                      +.|--- .+...+..++|+|+++.++.|++.... .  ..|.+.|+.|.|.||++..|.|++
T Consensus        17 ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f   78 (112)
T 2e6j_A           17 LDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF   78 (112)
T ss_dssp             EEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred             EecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence            444333 577888999999999999999996422 1  569999999999999999999999

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=96.97  E-value=0.0018  Score=58.12  Aligned_cols=61  Identities=15%  Similarity=0.178  Sum_probs=50.6

Q ss_pred             Ceeee-cCCCCeEEEEEEEEcCCCCeEEEEEeeCCCc-c-----eeecCCceeeCCCCeEEEEEEeec
Q 028668           25 PISST-FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPK-S-----CFMRPPGAILAPGESLIATVFKFV   85 (205)
Q Consensus        25 pL~F~-~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk-~-----Y~VRP~~GiI~Pges~~I~Vtl~~   85 (205)
                      .+.|- ..++...+.+|+|+|++.-+..|.+.....+ .     +.|.|+.|.|.||+++.|.|++.+
T Consensus        36 ~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v  103 (366)
T 3qis_A           36 EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  103 (366)
T ss_dssp             EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence            35553 4688999999999999999999999864222 2     559999999999999999999954

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=94.90  E-value=0.078  Score=43.83  Aligned_cols=56  Identities=18%  Similarity=0.305  Sum_probs=48.4

Q ss_pred             eeee-cCCCCeEEEEEEEEcCCCCeEEE-EEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668           26 ISST-FPAGKQVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK   83 (205)
Q Consensus        26 L~F~-~e~~k~~s~~LtLtN~S~~~VAF-KVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl   83 (205)
                      +.|- +. ++..+..++|+|.++.++.. +|+|+ -+...+.++.+.|.||++..|.|++
T Consensus       126 ~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~s-cgct~~~~~~~~i~PGe~~~i~v~~  183 (220)
T 2qsv_A          126 LDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTR-NPALTAVPDRTEIKPGGSTLLRIAV  183 (220)
T ss_dssp             EEEEECT-TSCEEEEEEEEECSSSCEEEEEEEEC-STTEEEEESCSEECTTCEEEEEEEE
T ss_pred             EeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeC-CCCEeeecCCccCCCCCEEEEEEEE
Confidence            4454 34 78889999999999999998 88876 4788888999999999999999999

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=94.22  E-value=0.14  Score=42.30  Aligned_cols=51  Identities=12%  Similarity=0.053  Sum_probs=45.6

Q ss_pred             CCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668           32 AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK   83 (205)
Q Consensus        32 ~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl   83 (205)
                      .++..+..++++|+++.++-++.-.. |.....++..+.|+||++..|.|++
T Consensus        17 ~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~   67 (220)
T 2qsv_A           17 PEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL   67 (220)
T ss_dssp             TTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred             CCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence            56677789999999999999997654 8888889999999999999999999

>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A

Probab=87.26  E-value=4.2  Score=36.99  Aligned_cols=70  Identities=24%  Similarity=0.256  Sum_probs=53.4

Q ss_pred             CCCCccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceee---------cC------------CceeeC
Q 028668           14 YPNGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM---------RP------------PGAILA   72 (205)
Q Consensus        14 ~~~~~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~V---------RP------------~~GiI~   72 (205)
                      ++++.|.+-+..-.|. .+++..+-+++++|.++++|-..==+|+.-+|.-         -|            +..-|.
T Consensus       245 ~~~~~V~~~v~~A~Y~-vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~  323 (382)
T 1yew_A          245 LPAPTVSVKVEDATYR-VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLA  323 (382)
T ss_dssp             CCCCSEEEEEEEEEEE-SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBC
T ss_pred             CCCCceEEEeeccEEe-cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcC
Confidence            6677777777766665 4789999999999999999988866777766632         12            123489


Q ss_pred             CCCeEEEEEEee
Q 028668           73 PGESLIATVFKF   84 (205)
Q Consensus        73 Pges~~I~Vtl~   84 (205)
                      |||+.+|+|+.+
T Consensus       324 PGETr~~~v~a~  335 (382)
T 1yew_A          324 PGETRTVDVTAS  335 (382)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCceeEEEEEee
Confidence            999999999984

>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}

Probab=86.15  E-value=15  Score=31.23  Aligned_cols=111  Identities=14%  Similarity=0.196  Sum_probs=70.8

Q ss_pred             cccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCC------C----cceeecCCceeeCCCCeEEEEEEeeccCC
Q 028668           19 VSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTA------P----KSCFMRPPGAILAPGESLIATVFKFVELP   88 (205)
Q Consensus        19 ~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTa------P----k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p   88 (205)
                      -.+.|.+.++.|+.++. ..+|+|+|.++.++.--+-...      |    .-|.|-|+.--|+||+...|.|..   ..
T Consensus        28 A~v~i~~TRvIy~~~~k-~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~---~~  103 (257)
T 3q48_A           28 AGLIAQGTRVVFPASER-EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY---LK  103 (257)
T ss_dssp             ---CCSCSEEEEETTCS-EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE---CC
T ss_pred             eeEEEcceEEEEeCCCc-EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE---CC
Confidence            35778889999988765 4899999999887665543221      1    139999999999999999999987   22


Q ss_pred             CCCCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCC
Q 028668           89 ENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE  142 (205)
Q Consensus        89 ~~~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p~  142 (205)
                      .  ..|.+..  .-|.+....++...+.     ....=+.....+|++-|-+..
T Consensus       104 ~--~LP~DrE--Slf~lnv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~~  148 (257)
T 3q48_A          104 A--PLPTDRE--SLFWLNILEVPPRDED-----ENNALQFSFRSRFKLFFRPSQ  148 (257)
T ss_dssp             C--CCCSSSC--EEEEEEEEEECCC--------------CCEEEEEEEEEECTT
T ss_pred             C--CCCCCce--eEEEEEeeecCCCCCC-----CCceEEEEEEEEEEEEEeccc
Confidence            1  1233332  3677777777764322     111113345788888887654

>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A

Probab=81.44  E-value=4.4  Score=37.24  Aligned_cols=66  Identities=21%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             CCccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCccee--------------------e-cCCceeeCCC
Q 028668           16 NGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF--------------------M-RPPGAILAPG   74 (205)
Q Consensus        16 ~~~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~--------------------V-RP~~GiI~Pg   74 (205)
                      ++.|.+-|..-.|. .+++..+-+++++|.++++|-+.==+|+.-+|.                    + .|+  -|.||
T Consensus       281 ~~~V~~~v~~A~Y~-vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG  357 (419)
T 3rfr_A          281 KEQVTTELNGGVYK-VPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG  357 (419)
T ss_dssp             SCCCEEEEEEEEEE-SSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred             CCceEEEEeceEEe-cCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence            55555555555554 378999999999999999998875566665554                    1 122  59999


Q ss_pred             CeEEEEEEee
Q 028668           75 ESLIATVFKF   84 (205)
Q Consensus        75 es~~I~Vtl~   84 (205)
                      |+.+++|..+
T Consensus       358 ETrt~~V~a~  367 (419)
T 3rfr_A          358 ESKEIVVKIQ  367 (419)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEEEEEee
Confidence            9999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	8e-22
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	6e-17
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	6e-17
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	2e-14

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.0 bits (210), Expect = 8e-22
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 13/125 (10%)

Query: 30  FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
                + ++ I + N +K+ VAFK +TTAP+   ++P  +   PG S+   V     L  
Sbjct: 31  SIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT- 89

Query: 90  NNEKPMYQKSRDKFKIISMKVKADVDYVP----ELFDEQKDQTAAEQILRVVFLNPERP- 144
                    ++D+F I++ +++      P    + + E       E  LR   +   +P 
Sbjct: 90  -------VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPN 142

Query: 145 EPALE 149
              L 
Sbjct: 143 SLMLS 147

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.0 bits (174), Expect = 6e-17
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 11/105 (10%)

Query: 23  ILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVF 82
           + P +  +PA     S   I + S S +AFK +++  +   +RP    +         + 
Sbjct: 6   VDPPTGNYPA-TGGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDIN 64

Query: 83  KFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 127
           +                 DK  I   +V A+       F     Q
Sbjct: 65  RLPG----------PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ 99

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.0 bits (174), Expect = 6e-17
 Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 14/109 (12%)

Query: 25  PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKF 84
           P + T PA   V S  K+ N     + FK +++      + P    + P  S    + + 
Sbjct: 5   PPACTVPA-AGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR- 62

Query: 85  VELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQI 133
                        K  DK  +      AD       F        A  +
Sbjct: 63  --------TAGAPK-EDKLVVHFASAPADATDAQAAF---VAVAPAGTV 99

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.9 bits (158), Expect = 2e-14
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 30  FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVF--KFVEL 87
            P   +    IK+ N+S   + +  +TT  K   + PP  +L P E+++  V    F   
Sbjct: 19  APYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFG 78

Query: 88  PENNEKPMYQKSRDKFKIISMKV--KADVDYVPELFDEQKDQTAAEQILRVVFL 139
            E+        + D+  +        A   +  E F  Q D     + L + + 
Sbjct: 79  QED-------TNNDRITVEWTNTPDGAAKQFRREWF--QGDGMVRRKNLPIEYN 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.96
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.96
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.9
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.9
d2co7b1	128	Periplasmic chaperone SafB {Salmonella typhimurium	92.93
d1p5va1	141	Chaperone protein Caf1m {Yersinia pestis [TaxId: 6	92.46
d2j2za1	124	Pilus chaperone PapD, N-domain {Escherichia coli [	89.41
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	89.28
d3bwuc1	121	Periplasmic chaperone FimC {Escherichia coli [TaxI	85.93

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.2e-29  Score=201.17  Aligned_cols=112  Identities=21%  Similarity=0.328  Sum_probs=100.4

Q ss_pred             CeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEE
Q 028668           25 PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK  104 (205)
Q Consensus        25 pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFL  104 (205)
                      .|.|.++++++++|.|+|+|+|+++||||||||+|++|+|||+.|+|.||++++|.|++   ++.     ....++|||+
T Consensus        26 ~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~---~~~-----~~~~~kdKFl   97 (152)
T d1wica_          26 ELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGG-----LTVSAQDRFL   97 (152)
T ss_dssp             CBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSS-----SCCCSSCCEE
T ss_pred             CeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEE---CCC-----CcccCCCcEE
Confidence            48899999999999999999999999999999999999999999999999999999999   443     3467899999


Q ss_pred             EEEEEeCCCCC----ChhhhhhccCCCcceEEEeEEEEeCCCCC
Q 028668          105 IISMKVKADVD----YVPELFDEQKDQTAAEQILRVVFLNPERP  144 (205)
Q Consensus       105 Iqs~~v~~~~d----~~~elfk~~~~~~i~e~KLrV~f~~p~~p  144 (205)
                      |+++.+++..+    ++.++|+...+..++++||+|+|+.+..|
T Consensus        98 i~~~~v~~~~~~~~~d~~~~wk~~~~~~i~~~kLkv~~~~~~~p  141 (152)
T d1wica_          98 IMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKP  141 (152)
T ss_dssp             EEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSS
T ss_pred             EEEEEeCCCCCCCccCHHHHhhcCCcCcEEEEEEEEEEeCCCCC
Confidence            99999976542    36789999888899999999999987544

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=3.5e-28  Score=189.30  Aligned_cols=119  Identities=17%  Similarity=0.196  Sum_probs=100.5

Q ss_pred             CCCCccccceeC---eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCC
Q 028668           14 YPNGAVSSLILP---ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN   90 (205)
Q Consensus        14 ~~~~~~~~~i~p---L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~   90 (205)
                      +|.|.+  .|.|   |.|.+++++.+++.|+|+|+|+.+||||||||+|++|+|||+.|+|.||+++.|.|+|   ++..
T Consensus         2 ~p~~~l--~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~---~~~~   76 (124)
T d1grwa_           2 VPPGDI--QTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSC---DAFA   76 (124)
T ss_dssp             CCCCCE--EEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CCCC
T ss_pred             cCCCce--EECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEE---ecCC
Confidence            355532  3555   9999999999999999999999999999999999999999999999999999999999   6653


Q ss_pred             CCCCCCCCCCceEEEEEEEeCCCC-CChhhhhhccCCCcceEEEeEEEEeC
Q 028668           91 NEKPMYQKSRDKFKIISMKVKADV-DYVPELFDEQKDQTAAEQILRVVFLN  140 (205)
Q Consensus        91 ~e~p~~~~~kDKFLIqs~~v~~~~-d~~~elfk~~~~~~i~e~KLrV~f~~  140 (205)
                      .  ..+.+++|||+||++.++++. +.....|+...+ .+.+++|+|.|.+
T Consensus        77 ~--~~~~~~~dkF~v~~~~~p~~~~~~~~~~w~~~~~-~~~~~~l~V~Y~p  124 (124)
T d1grwa_          77 F--GQEDTNNDRITVEWTNTPDGAAKQFRREWFQGDG-MVRRKNLPIEYNP  124 (124)
T ss_dssp             G--GGSCCTTCEEEEEEEECCSSCCSSCCGGGGTSSS-CCEEEEEEEEEEC
T ss_pred             C--CCcccCCceEEEEEEECCCccHHHHHHHHhccCC-ceEEEEEEEEeCC
Confidence            3  345688999999999998654 445677776544 6789999999975

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=2.7e-23  Score=158.09  Aligned_cols=102  Identities=18%  Similarity=0.199  Sum_probs=83.8

Q ss_pred             eeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCce
Q 028668           23 ILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDK  102 (205)
Q Consensus        23 i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDK  102 (205)
                      +.|....|+. ...+++|+|+|.|+.+||||||||+|.+|+|+|+.|+|.||+++.|.|++   +|+       ...+||
T Consensus         3 ~dP~~~~f~~-~~g~~~~~l~N~s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~---~~~-------~~~~DK   71 (107)
T d1rowa_           3 ADPPACTVPA-AGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------APKEDK   71 (107)
T ss_dssp             EESSSEEEET-TCEEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------CCEEEE
T ss_pred             eCCCcceeeC-CCCeEEEEEEcCCCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEe---CCC-------CCCCCE
Confidence            4454444443 34788999999999999999999999999999999999999999999999   553       235899


Q ss_pred             EEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEE
Q 028668          103 FKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  137 (205)
Q Consensus       103 FLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~  137 (205)
                      |+||++.++++.++..++|++....  ++..+++.
T Consensus        72 f~I~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl~  104 (107)
T d1rowa_          72 LVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS  104 (107)
T ss_dssp             EEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred             EEEEEEECCCCCcCHHHHhhcCCCC--CcEEEEEE
Confidence            9999999999988899999987654  44455543

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=5.4e-23  Score=156.59  Aligned_cols=96  Identities=21%  Similarity=0.211  Sum_probs=81.4

Q ss_pred             eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEE
Q 028668           26 ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKI  105 (205)
Q Consensus        26 L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFLI  105 (205)
                      |.|+++.   .+++++|+|.|+.+||||||||+|++|+|+|++|+|+||++++|.|++   +++.       ..+|||+|
T Consensus        11 l~F~~~~---g~~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~---~~~~-------~~~DKf~I   77 (109)
T d1m1sa_          11 GNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPGP-------PKEDKIVI   77 (109)
T ss_dssp             EEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSCC-------SCEEEEEE
T ss_pred             EEeecCC---CcEEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEe---CCCC-------CCCCEEEE
Confidence            6665443   468999999999999999999999999999999999999999999999   5541       35899999


Q ss_pred             EEEEeCCCCCChhhhhhccCCCcceEEEeEE
Q 028668          106 ISMKVKADVDYVPELFDEQKDQTAAEQILRV  136 (205)
Q Consensus       106 qs~~v~~~~d~~~elfk~~~~~~i~e~KLrV  136 (205)
                      +++.++++.++..++|++....  .+..+++
T Consensus        78 ~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl  106 (109)
T d1m1sa_          78 QYAEVPAEETDPMAPFKAGAQQ--GEIIVKL  106 (109)
T ss_dssp             EEEEECTTCCCTTHHHHTTCCC--EEEEEEE
T ss_pred             EEEECCCCCcCHHHHHhcCCCC--CcEEEEE
Confidence            9999999988889999997765  3444443

>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.93  E-value=0.63  Score=33.66  Aligned_cols=85  Identities=11%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             cceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeC-----CCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCC
Q 028668           21 SLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM   95 (205)
Q Consensus        21 ~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTT-----aPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~   95 (205)
                      +.+..-++-|..++ ...+++|+|.++.++-..+...     ....|.|-|+.--|+||++..|.|...   ..  ..|.
T Consensus         7 v~l~~TRvi~~~~~-~~~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI~~~---~~--~lp~   80 (128)
T d2co7b1           7 VKLGATRVIYHAGT-AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT---GG--DMPT   80 (128)
T ss_dssp             CEESCSEEEEETTS-SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEEC---CC--CCCS
T ss_pred             EEECCeEEEEcCCC-CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEEEec---CC--CCCC
Confidence            34556677776654 5788999999998876665432     233599999999999999999999872   21  1233


Q ss_pred             CCCCCceEEEEEEEeCCC
Q 028668           96 YQKSRDKFKIISMKVKAD  113 (205)
Q Consensus        96 ~~~~kDKFLIqs~~v~~~  113 (205)
                      +.  .--|.+....+++.
T Consensus        81 dr--Es~f~l~i~~IP~~   96 (128)
T d2co7b1          81 DR--ETLQWVCIKAVPPE   96 (128)
T ss_dssp             SS--CEEEEEEEEEECCC
T ss_pred             Cc--EEEEEEEEEEcCCC
Confidence            22  23577666666654

>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Chaperone protein Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=92.46  E-value=1  Score=33.08  Aligned_cols=85  Identities=12%  Similarity=0.050  Sum_probs=59.2

Q ss_pred             cceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCC-------cceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 028668           21 SLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAP-------KSCFMRPPGAILAPGESLIATVFKFVELPENNEK   93 (205)
Q Consensus        21 ~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaP-------k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~   93 (205)
                      +.|...++-|+.++. ...++|+|.++.++...+.....       .-|.|-|+...|+||++..|.|..   ...  ..
T Consensus         8 v~l~~TRvIy~~~~~-~~s~~v~N~~~~p~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p~~~~~lRI~~---~~~--~l   81 (141)
T d1p5va1           8 VTIGESRIIYPLDAA-GVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ---AGG--VF   81 (141)
T ss_dssp             EEESCSEEEEETTCS-CEEEEEEECSSSCEEEEEEECC---------CEEEESSEEEECTTCEEEEEEEE---CSC--CC
T ss_pred             eEeCccEEEEcCCCc-EEEEEEEeCCCCCEEEEEEEEcCCCCcCCCCCeEEcCCeEEECCCCceEEEEEe---cCC--CC
Confidence            456667778877654 67899999999998888765432       129999999999999999999986   221  12


Q ss_pred             CCCCCCCceEEEEEEEeCCC
Q 028668           94 PMYQKSRDKFKIISMKVKAD  113 (205)
Q Consensus        94 p~~~~~kDKFLIqs~~v~~~  113 (205)
                      |.+.  .--|.+....++..
T Consensus        82 P~Dr--Eslf~l~i~~IP~~   99 (141)
T d1p5va1          82 PRDK--ESLKWLCVKGIPPK   99 (141)
T ss_dssp             CSSS--CEEEEEEEEEEC--
T ss_pred             CCcc--eEEEEEEEEEcCCC
Confidence            3333  23577666666654

>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Pilus chaperone PapD, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=1.9  Score=30.86  Aligned_cols=105  Identities=13%  Similarity=0.187  Sum_probs=62.1

Q ss_pred             eeCeeeecCCCCeEEEEEEEEcCCCC-eEEEEEeeC--C-----CcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCC
Q 028668           23 ILPISSTFPAGKQVRSAIKIKNTSKS-HVAFKFQTT--A-----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKP   94 (205)
Q Consensus        23 i~pL~F~~e~~k~~s~~LtLtN~S~~-~VAFKVKTT--a-----Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p   94 (205)
                      |...++-|..+ ...++++|+|.+++ ++--...+.  .     ..-|.|-|+.--|+||++..+.|.+.   ......|
T Consensus         4 l~~TRvI~~~~-~~~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI~~~---~~~~~lP   79 (124)
T d2j2za1           4 LDRTRAVFDGS-EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTT---PDISKLP   79 (124)
T ss_dssp             ESCSEEEEETT-SSEEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEEEEC---GGGGGSC
T ss_pred             eCCcEEEEeCC-CCEEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEEEEc---CCCCCCC
Confidence            45556667654 45688999998764 443333221  1     12389999999999999999999972   1111123


Q ss_pred             CCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeC
Q 028668           95 MYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLN  140 (205)
Q Consensus        95 ~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~  140 (205)
                      .+.  .--|.+....+++..+.       ..+ .....++|++-|-+
T Consensus        80 ~dr--Es~~~l~i~~IP~~~~~-------~~~l~i~~r~~iklFyRP  117 (124)
T d2j2za1          80 QDR--ESLFYFNLREIPPRSEK-------ANVLQIALQTKIKLFYRP  117 (124)
T ss_dssp             SSS--CEEEEEEEEEECCCCCC-------SSEEEEEEEEEEEEEEEC
T ss_pred             Cce--eEEEEEEEEecCCCCCC-------CCEEEEEEeeEEEEEECC
Confidence            332  23566666666654321       111 22336667776655

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=89.28  E-value=0.24  Score=34.99  Aligned_cols=57  Identities=21%  Similarity=0.198  Sum_probs=48.8

Q ss_pred             eecCCCCeEEEEEEEEcCCCCeEE-EEEeeCCCcceeecCCceeeCCCCeEEEEEEee
Q 028668           28 STFPAGKQVRSAIKIKNTSKSHVA-FKFQTTAPKSCFMRPPGAILAPGESLIATVFKF   84 (205)
Q Consensus        28 F~~e~~k~~s~~LtLtN~S~~~VA-FKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~   84 (205)
                      ...+++...+-.++++|..+..+. .++--+.|.-..+.|..--|.||++..+++.+.
T Consensus        11 ~~v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~Vt   68 (103)
T d1w8oa1          11 VALEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTIT   68 (103)
T ss_dssp             EEECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEEE
T ss_pred             eeeCCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEEE
Confidence            467899999999999999876653 466667899999999998999999999999983

>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone FimC
species: Escherichia coli [TaxId: 562]

Probab=85.93  E-value=3.5  Score=29.17  Aligned_cols=83  Identities=11%  Similarity=0.193  Sum_probs=52.6

Q ss_pred             eeCeeeecCCCCeEEEEEEEEcCCCC-eEEEEE-----eeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCC
Q 028668           23 ILPISSTFPAGKQVRSAIKIKNTSKS-HVAFKF-----QTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMY   96 (205)
Q Consensus        23 i~pL~F~~e~~k~~s~~LtLtN~S~~-~VAFKV-----KTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~   96 (205)
                      +..-++-|+.++ ..+.++|+|.+++ ++---.     ..+....|.|-|+.--|+||+...|.|...   ..+ ..|.+
T Consensus         4 l~~TRvI~~~~~-~~~~~~i~N~~~~~~~lvq~wv~~~d~~~~~~fivtPPl~rl~p~~~q~vRI~~~---~~~-~lp~d   78 (121)
T d3bwuc1           4 LGATRVIYPAGQ-KQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDA---TNN-QLPQD   78 (121)
T ss_dssp             ESCSEEEEETTC-SEEEEEEEECCTTCEEEEEEEEEETTSCCCSSEEEESSEEEEESSEEEEEEEEEC---STT-CSCSS
T ss_pred             ECceEEEEcCCC-ceEEEEEEECCCCccEEEEEEEEcCCCCcCCCeeECCCcEEeCCCCeeEEEEEec---CCC-CCCCC
Confidence            344566666544 6689999998754 433222     123444699999999999999999999872   221 12333


Q ss_pred             CCCCceEEEEEEEeCC
Q 028668           97 QKSRDKFKIISMKVKA  112 (205)
Q Consensus        97 ~~~kDKFLIqs~~v~~  112 (205)
                      .  .--|.+....+++
T Consensus        79 r--Eslf~l~i~~IP~   92 (121)
T d3bwuc1          79 R--ESLFWMNVKAIPS   92 (121)
T ss_dssp             S--CEEEEEEEEEEEC
T ss_pred             e--EEEEEEEEEEcCC
Confidence            2  2356666666654