Citrus Sinensis ID: 028674

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHPYIDF
cHHHHcccccccccEEEEEEccccccccccccHHHHHHccHHcccccccEEEEccccccEEEEEcccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
cHHHHHcccccccEEEEEEEEcccccccccccHHHHHHcccccccccccEEEEEcccccccEccccEEEEEEEEEcccccccccHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccEEEccccccccccccEEEEEcEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccEcc
MRKLGETKLKLKSTVIAVFIAseensaitgvGVDALVKDgllnklkggplywidtadkqpcigtggmipwklhvtgklfhsglphkainPLELAMEALKVIQTRfykdfpphpkeqvygfetpstmkptqwsypggginqipgectvsgdvrltpfynVTDVMKRLQEYVDDINENIekldtrgpvskyvlpdenirgrhpyidf
mrklgetklklKSTVIAVFIaseensaitgvGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEniekldtrgpvskyvlpdenirgrhpyidf
MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHPYIDF
*********KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET***MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL**************
MRK****KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRG*HPYIDF
MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHPYIDF
MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHPYIDF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVxxxxxxxxxxxxxxxxxxxxxGPVSKYVLPDENIRGRHPYIDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query205 2.2.26 [Sep-21-2011]
P54638447 Acetylornithine deacetyla yes no 0.926 0.425 0.521 9e-54
B2SQY5376 Succinyl-diaminopimelate yes no 0.721 0.393 0.25 1e-06
Q3BVJ3376 Succinyl-diaminopimelate yes no 0.707 0.385 0.254 2e-06
Q5H1C8376 Succinyl-diaminopimelate yes no 0.721 0.393 0.25 3e-06
Q2P492376 Succinyl-diaminopimelate yes no 0.721 0.393 0.25 3e-06
Q8PMJ5376 Succinyl-diaminopimelate yes no 0.692 0.377 0.253 3e-06
Q8PAU0376 Succinyl-diaminopimelate yes no 0.668 0.364 0.267 4e-06
Q4USS4376 Succinyl-diaminopimelate yes no 0.668 0.364 0.267 4e-06
B0RW53376 Succinyl-diaminopimelate yes no 0.668 0.364 0.267 4e-06
Q87F49377 Succinyl-diaminopimelate yes no 0.624 0.339 0.263 2e-05
>sp|P54638|ARGE_DICDI Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE PE=1 SV=2 Back     alignment and function desciption
 Score =  209 bits (532), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 125/190 (65%)

Query: 3   KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCI 62
           +L   K  LK ++ AVFI SEEN  I G+GVDAL   G +N  K GP+YW+D+AD QP I
Sbjct: 149 QLATEKPALKHSIFAVFIVSEENDEIPGIGVDALDHSGKMNPCKNGPVYWVDSADSQPTI 208

Query: 63  GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET 122
           GTGG   W L   GK  HS +P++ +N +EL  EAL  IQ RFY DF PHPKE  Y F+ 
Sbjct: 209 GTGGAQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDC 268

Query: 123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDT 182
            STMKPT W    G  N IPGE T+ GD+RLTPFY++ ++  +++ Y+ DIN NI +L  
Sbjct: 269 SSTMKPTLWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRN 328

Query: 183 RGPVSKYVLP 192
           RGP SKY +P
Sbjct: 329 RGPYSKYDVP 338

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 6
>sp|B2SQY5|DAPE_XANOP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dapE PE=3 SV=1 Back     alignment and function description
>sp|Q3BVJ3|DAPE_XANC5 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dapE PE=3 SV=1 Back     alignment and function description
>sp|Q5H1C8|DAPE_XANOR Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) GN=dapE PE=3 SV=2 Back     alignment and function description
>sp|Q2P492|DAPE_XANOM Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dapE PE=3 SV=1 Back     alignment and function description
>sp|Q8PMJ5|DAPE_XANAC Succinyl-diaminopimelate desuccinylase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=dapE PE=3 SV=1 Back     alignment and function description
>sp|Q8PAU0|DAPE_XANCP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=dapE PE=3 SV=2 Back     alignment and function description
>sp|Q4USS4|DAPE_XANC8 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dapE PE=3 SV=2 Back     alignment and function description
>sp|B0RW53|DAPE_XANCB Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris pv. campestris (strain B100) GN=dapE PE=3 SV=1 Back     alignment and function description
>sp|Q87F49|DAPE_XYLFT Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=dapE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query205
224126285 435 predicted protein [Populus trichocarpa] 0.965 0.455 0.888 1e-102
229463815 330 N2-acetylornithine deacetylase [Populus 0.965 0.6 0.888 1e-102
224138900 435 predicted protein [Populus trichocarpa] 0.965 0.455 0.888 1e-101
229463817 330 N2-acetylornithine deacetylase [Populus 0.965 0.6 0.888 1e-101
356541481 438 PREDICTED: acetylornithine deacetylase-l 0.970 0.454 0.874 1e-101
297742105 340 unnamed protein product [Vitis vinifera] 0.965 0.582 0.868 1e-100
147779898 433 hypothetical protein VITISV_016426 [Viti 0.965 0.457 0.868 1e-100
225427220 433 PREDICTED: acetylornithine deacetylase [ 0.965 0.457 0.868 1e-100
356541483 450 PREDICTED: acetylornithine deacetylase-l 0.970 0.442 0.824 2e-98
357482393 439 N-acetylornithine deacetylase-like prote 0.965 0.451 0.853 3e-98
>gi|224126285|ref|XP_002329517.1| predicted protein [Populus trichocarpa] gi|222870226|gb|EEF07357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/198 (88%), Positives = 190/198 (95%)

Query: 1   MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQP 60
           M+KLGETKLKLKSTV+AVFIA+EENS+ITGVGVDALVKDGLLNKLKGGPL+WIDTADKQP
Sbjct: 141 MKKLGETKLKLKSTVVAVFIANEENSSITGVGVDALVKDGLLNKLKGGPLFWIDTADKQP 200

Query: 61  CIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF 120
           CIGTGGMIPWKLH TGKLFHSGLPHKAINPLEL MEALK IQ+RFY+DFPPH +EQVYGF
Sbjct: 201 CIGTGGMIPWKLHFTGKLFHSGLPHKAINPLELGMEALKEIQSRFYEDFPPHKEEQVYGF 260

Query: 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKL 180
            TPSTMKPTQWSYPGGGINQIP ECT+SGDVRLTPFY+V DVM +LQEYVD+INENIEKL
Sbjct: 261 ATPSTMKPTQWSYPGGGINQIPAECTISGDVRLTPFYSVKDVMDKLQEYVDEINENIEKL 320

Query: 181 DTRGPVSKYVLPDENIRG 198
           DTRGPVSKYVLP+EN+RG
Sbjct: 321 DTRGPVSKYVLPEENLRG 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|229463815|gb|ACQ66333.1| N2-acetylornithine deacetylase [Populus maximowiczii x Populus nigra] Back     alignment and taxonomy information
>gi|224138900|ref|XP_002326718.1| predicted protein [Populus trichocarpa] gi|222834040|gb|EEE72517.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|229463817|gb|ACQ66334.1| N2-acetylornithine deacetylase [Populus maximowiczii x Populus nigra] Back     alignment and taxonomy information
>gi|356541481|ref|XP_003539204.1| PREDICTED: acetylornithine deacetylase-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297742105|emb|CBI33892.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147779898|emb|CAN74783.1| hypothetical protein VITISV_016426 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427220|ref|XP_002280473.1| PREDICTED: acetylornithine deacetylase [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541483|ref|XP_003539205.1| PREDICTED: acetylornithine deacetylase-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357482393|ref|XP_003611482.1| N-acetylornithine deacetylase-like protein [Medicago truncatula] gi|355512817|gb|AES94440.1| N-acetylornithine deacetylase-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query205
DICTYBASE|DDB_G0267380447 argE "acetylornithine deacetyl 0.926 0.425 0.521 6.5e-51
DICTYBASE|DDB_G0267380 argE "acetylornithine deacetylase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 99/190 (52%), Positives = 125/190 (65%)

Query:     3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCI 62
             +L   K  LK ++ AVFI SEEN  I G+GVDAL   G +N  K GP+YW+D+AD QP I
Sbjct:   149 QLATEKPALKHSIFAVFIVSEENDEIPGIGVDALDHSGKMNPCKNGPVYWVDSADSQPTI 208

Query:    63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET 122
             GTGG   W L   GK  HS +P++ +N +EL  EAL  IQ RFY DF PHPKE  Y F+ 
Sbjct:   209 GTGGAQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDC 268

Query:   123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDT 182
              STMKPT W    G  N IPGE T+ GD+RLTPFY++ ++  +++ Y+ DIN NI +L  
Sbjct:   269 SSTMKPTLWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRN 328

Query:   183 RGPVSKYVLP 192
             RGP SKY +P
Sbjct:   329 RGPYSKYDVP 338


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.139   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       205   0.00096  111 3  11 22  0.39    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.16u 0.11s 18.27t   Elapsed:  00:00:01
  Total cpu time:  18.16u 0.11s 18.27t   Elapsed:  00:00:01
  Start:  Sat May 11 06:51:02 2013   End:  Sat May 11 06:51:03 2013
GO:0005615 "extracellular space" evidence=IDA
GO:0045335 "phagocytic vesicle" evidence=IDA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0008777 "acetylornithine deacetylase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0006526 "arginine biosynthetic process" evidence=IEA
GO:0044351 "macropinocytosis" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
cd08012423 cd08012, M20_ArgE-related, M20 Peptidases with sim 1e-131
cd08659365 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo 3e-17
pfam07687107 pfam07687, M20_dimer, Peptidase dimerisation domai 8e-17
PRK08651394 PRK08651, PRK08651, succinyl-diaminopimelate desuc 1e-13
cd08011390 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with 2e-12
TIGR01910375 TIGR01910, DapE-ArgE, acetylornithine deacetylase 1e-11
pfam01546310 pfam01546, Peptidase_M20, Peptidase family M20/M25 3e-10
COG0624409 COG0624, ArgE, Acetylornithine deacetylase/Succiny 2e-09
PRK13983400 PRK13983, PRK13983, diaminopimelate aminotransfera 1e-08
cd03894372 cd03894, M20_ArgE, M20 Peptidase acetylornithine d 3e-08
cd05675426 cd05675, M20_yscS_like, M20 Peptidase, carboxypept 5e-08
cd05650393 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with 6e-08
PRK08588377 PRK08588, PRK08588, succinyl-diaminopimelate desuc 8e-08
cd05649376 cd05649, M20_ArgE_DapE_like4, M20 Peptidases with 3e-06
PRK07522385 PRK07522, PRK07522, acetylornithine deacetylase; P 1e-05
cd05651342 cd05651, M20_ArgE_DapE_like5, M20 Peptidases with 2e-05
TIGR01246370 TIGR01246, dapE_proteo, succinyl-diaminopimelate d 2e-05
cd03891366 cd03891, M20_DapE_proteobac, M20 Peptidase proteob 7e-05
TIGR01891363 TIGR01891, amidohydrolases, amidohydrolase 2e-04
cd03873237 cd03873, Zinc_peptidase_like, Zinc peptidases M18, 7e-04
cd08018365 cd08018, M20_Acy1_amhX_like, M20 Peptidase Aminoac 0.001
PRK13009375 PRK13009, PRK13009, succinyl-diaminopimelate desuc 0.001
cd05652335 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases 0.002
>gnl|CDD|193560 cd08012, M20_ArgE-related, M20 Peptidases with simlarity to acetylornithine deacetylases Back     alignment and domain information 
 Score =  375 bits (964), Expect = e-131
 Identities = 149/199 (74%), Positives = 167/199 (83%)

Query: 1   MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQP 60
            R+L E K  LK TV+AVFIA+EENS I GVGVD LVK G L+ LK GP+YW+D+AD QP
Sbjct: 130 FRQLAERKPALKRTVVAVFIANEENSEIPGVGVDGLVKQGKLDPLKSGPVYWVDSADSQP 189

Query: 61  CIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF 120
           CIGTGG+I WKL  TGKLFHSGLPHKAIN LELAMEAL  IQ RFY+DFPPHPKE+ YGF
Sbjct: 190 CIGTGGVITWKLKATGKLFHSGLPHKAINALELAMEALAEIQKRFYEDFPPHPKEERYGF 249

Query: 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKL 180
            T STMKPTQWSYPGGGINQIPGE T+SGD+RLTPFY+V +V K+L++YV DIN NIE+L
Sbjct: 250 ATSSTMKPTQWSYPGGGINQIPGEATISGDIRLTPFYDVAEVQKKLEKYVADINANIERL 309

Query: 181 DTRGPVSKYVLPDENIRGR 199
            TRGPVSKYVLPDE  RGR
Sbjct: 310 PTRGPVSKYVLPDEGGRGR 328

Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16)-related subfamily. Proteins in this subfamily have not yet been characterized, but have been predicted to have deacetylase activity. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 423
>gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like Back     alignment and domain information
>gnl|CDD|219515 pfam07687, M20_dimer, Peptidase dimerisation domain Back     alignment and domain information
>gnl|CDD|236323 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>gnl|CDD|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases Back     alignment and domain information
>gnl|CDD|233632 TIGR01910, DapE-ArgE, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40 Back     alignment and domain information
>gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|237578 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|193514 cd03894, M20_ArgE, M20 Peptidase acetylornithine deacetylase Back     alignment and domain information
>gnl|CDD|193550 cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like Back     alignment and domain information
>gnl|CDD|193527 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases Back     alignment and domain information
>gnl|CDD|181490 PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>gnl|CDD|193526 cd05649, M20_ArgE_DapE_like4, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases Back     alignment and domain information
>gnl|CDD|236039 PRK07522, PRK07522, acetylornithine deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|193528 cd05651, M20_ArgE_DapE_like5, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases Back     alignment and domain information
>gnl|CDD|162269 TIGR01246, dapE_proteo, succinyl-diaminopimelate desuccinylase, proteobacterial clade Back     alignment and domain information
>gnl|CDD|193511 cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase Back     alignment and domain information
>gnl|CDD|233621 TIGR01891, amidohydrolases, amidohydrolase Back     alignment and domain information
>gnl|CDD|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42 Back     alignment and domain information
>gnl|CDD|193565 cd08018, M20_Acy1_amhX_like, M20 Peptidase Aminoacylase 1 amhX_like subfamily Back     alignment and domain information
>gnl|CDD|237265 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>gnl|CDD|193529 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 205
PRK08588377 succinyl-diaminopimelate desuccinylase; Reviewed 99.95
COG1473392 AbgB Metal-dependent amidase/aminoacylase/carboxyp 99.95
PRK06915422 acetylornithine deacetylase; Validated 99.94
TIGR01910375 DapE-ArgE acetylornithine deacetylase or succinyl- 99.94
PRK13013427 succinyl-diaminopimelate desuccinylase; Reviewed 99.94
PLN02280478 IAA-amino acid hydrolase 99.93
TIGR01892364 AcOrn-deacetyl acetylornithine deacetylase (ArgE). 99.93
PRK07522385 acetylornithine deacetylase; Provisional 99.93
PRK05111383 acetylornithine deacetylase; Provisional 99.93
TIGR01246370 dapE_proteo succinyl-diaminopimelate desuccinylase 99.93
PRK13009375 succinyl-diaminopimelate desuccinylase; Reviewed 99.93
PRK08651394 succinyl-diaminopimelate desuccinylase; Reviewed 99.92
TIGR01891363 amidohydrolases amidohydrolase. This model represe 99.92
TIGR01900373 dapE-gram_pos succinyl-diaminopimelate desuccinyla 99.92
PLN02693437 IAA-amino acid hydrolase 99.92
PRK08737364 acetylornithine deacetylase; Provisional 99.92
PRK08652347 acetylornithine deacetylase; Provisional 99.92
PRK13007352 succinyl-diaminopimelate desuccinylase; Reviewed 99.92
PRK07338402 hypothetical protein; Provisional 99.92
PRK06133410 glutamate carboxypeptidase; Reviewed 99.92
PRK13004399 peptidase; Reviewed 99.91
PRK09290413 allantoate amidohydrolase; Reviewed 99.91
TIGR03526395 selenium_YgeY putative selenium metabolism hydrola 99.91
PRK13983400 diaminopimelate aminotransferase; Provisional 99.91
PRK00466346 acetyl-lysine deacetylase; Validated 99.91
PRK06837427 acetylornithine deacetylase; Provisional 99.91
TIGR03320395 ygeY M20/DapE family protein YgeY. Members of this 99.91
PRK12892412 allantoate amidohydrolase; Reviewed 99.9
TIGR01880400 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase 99.9
PRK12893412 allantoate amidohydrolase; Reviewed 99.9
PRK09133472 hypothetical protein; Provisional 99.89
PRK12891414 allantoate amidohydrolase; Reviewed 99.89
PRK08262486 hypothetical protein; Provisional 99.89
PRK12890414 allantoate amidohydrolase; Reviewed 99.89
PRK07473376 carboxypeptidase; Provisional 99.89
PRK06446436 hypothetical protein; Provisional 99.88
PRK08596421 acetylornithine deacetylase; Validated 99.88
PRK04443348 acetyl-lysine deacetylase; Provisional 99.88
TIGR01879401 hydantase amidase, hydantoinase/carbamoylase famil 99.88
PRK08201456 hypothetical protein; Provisional 99.87
TIGR01883361 PepT-like peptidase T-like protein. This model rep 99.87
PRK09104464 hypothetical protein; Validated 99.86
KOG2275420 consensus Aminoacylase ACY1 and related metalloexo 99.86
PRK07906426 hypothetical protein; Provisional 99.85
TIGR03176406 AllC allantoate amidohydrolase. This enzyme cataly 99.85
TIGR01902336 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d 99.85
PRK07907449 hypothetical protein; Provisional 99.84
TIGR01886466 dipeptidase dipeptidase PepV. This model represent 99.84
COG0624409 ArgE Acetylornithine deacetylase/Succinyl-diaminop 99.83
PRK07079469 hypothetical protein; Provisional 99.83
PRK13381404 peptidase T; Provisional 99.82
PF07687111 M20_dimer: Peptidase dimerisation domain This fami 99.82
PRK07318466 dipeptidase PepV; Reviewed 99.82
PRK05469408 peptidase T; Provisional 99.8
PRK13799591 unknown domain/N-carbamoyl-L-amino acid hydrolase 99.79
PRK13590591 putative bifunctional OHCU decarboxylase/allantoat 99.79
PRK07205444 hypothetical protein; Provisional 99.77
PRK15026 485 aminoacyl-histidine dipeptidase; Provisional 99.77
TIGR01882410 peptidase-T peptidase T. This model represents a t 99.76
TIGR01887447 dipeptidaselike dipeptidase, putative. This model 99.76
PRK06156520 hypothetical protein; Provisional 99.73
TIGR01893 477 aa-his-dipept aminoacyl-histidine dipeptidase. 99.65
PRK08554438 peptidase; Reviewed 99.57
KOG2276473 consensus Metalloexopeptidases [Amino acid transpo 98.96
COG4187 553 RocB Arginine degradation protein (predicted deacy 98.8
COG2195414 PepD Di- and tripeptidases [Amino acid transport a 98.51
PF01546189 Peptidase_M20: Peptidase family M20/M25/M40 This f 97.8
TIGR01893477 aa-his-dipept aminoacyl-histidine dipeptidase. 94.41
PF04389179 Peptidase_M28: Peptidase family M28; InterPro: IPR 94.2
TIGR03107350 glu_aminopep glutamyl aminopeptidase. This model r 93.48
PF05343292 Peptidase_M42: M42 glutamyl aminopeptidase; InterP 93.23
PRK09961344 exoaminopeptidase; Provisional 92.52
PRK09864356 putative peptidase; Provisional 92.5
PRK15026485 aminoacyl-histidine dipeptidase; Provisional 92.4
COG1363355 FrvX Cellulase M and related proteins [Carbohydrat 91.34
PRK10199346 alkaline phosphatase isozyme conversion aminopepti 90.9
TIGR03106343 trio_M42_hydro hydrolase, peptidase M42 family. Th 87.56
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information 
Probab=99.95  E-value=1.3e-26  Score=192.87  Aligned_cols=162  Identities=23%  Similarity=0.321  Sum_probs=139.2

Q ss_pred             hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCc
Q 028674            2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS   81 (205)
Q Consensus         2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Ha   81 (205)
                      +.|++.+..++++|.|+|++|||.|+   .|+++|++++.+++  +|++++.||+...+.++++|..+++|+++|+++|+
T Consensus       113 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~G~~~~~~~~~~~~--~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Hs  187 (377)
T PRK08588        113 IELKEQGQLLNGTIRLLATAGEEVGE---LGAKQLTEKGYADD--LDALIIGEPSGHGIVYAHKGSMDYKVTSTGKAAHS  187 (377)
T ss_pred             HHHHHcCCCCCCcEEEEEEcccccCc---hhHHHHHhcCccCC--CCEEEEecCCCceeEEEEEEEEEEEEEEEeechhc
Confidence            46777888889999999999999987   79999999876543  57899999988888899999999999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHH
Q 028674           82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD  161 (205)
Q Consensus        82 s~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~  161 (205)
                      |.|+.|.|||..+++++.++.++..+ +...     ....+..+++++.++ +|...|+||++|++++|+|+.|+++.++
T Consensus       188 s~p~~g~nAi~~~~~~l~~l~~~~~~-~~~~-----~~~~~~~t~~v~~i~-gG~~~nvip~~~~~~~d~R~~p~~~~~~  260 (377)
T PRK08588        188 SMPELGVNAIDPLLEFYNEQKEYFDS-IKKH-----NPYLGGLTHVVTIIN-GGEQVNSVPDEAELEFNIRTIPEYDNDQ  260 (377)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHhhh-hccc-----CccCCCCceeeeEEe-CCCcCCcCCCeEEEEEEeccCCCCCHHH
Confidence            99999999999999999999875322 2211     112235788999998 9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 028674          162 VMKRLQEYVDDINE  175 (205)
Q Consensus       162 i~~~i~~~i~~~~~  175 (205)
                      +.++|++.+++...
T Consensus       261 v~~~i~~~~~~~~~  274 (377)
T PRK08588        261 VISLLQEIINEVNQ  274 (377)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988653

>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only] Back     alignment and domain information
>PRK06915 acetylornithine deacetylase; Validated Back     alignment and domain information
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PLN02280 IAA-amino acid hydrolase Back     alignment and domain information
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) Back     alignment and domain information
>PRK07522 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK05111 acetylornithine deacetylase; Provisional Back     alignment and domain information
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade Back     alignment and domain information
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>TIGR01891 amidohydrolases amidohydrolase Back     alignment and domain information
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>PLN02693 IAA-amino acid hydrolase Back     alignment and domain information
>PRK08737 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK08652 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK07338 hypothetical protein; Provisional Back     alignment and domain information
>PRK06133 glutamate carboxypeptidase; Reviewed Back     alignment and domain information
>PRK13004 peptidase; Reviewed Back     alignment and domain information
>PRK09290 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase Back     alignment and domain information
>PRK13983 diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>PRK00466 acetyl-lysine deacetylase; Validated Back     alignment and domain information
>PRK06837 acetylornithine deacetylase; Provisional Back     alignment and domain information
>TIGR03320 ygeY M20/DapE family protein YgeY Back     alignment and domain information
>PRK12892 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase Back     alignment and domain information
>PRK12893 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK09133 hypothetical protein; Provisional Back     alignment and domain information
>PRK12891 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK08262 hypothetical protein; Provisional Back     alignment and domain information
>PRK12890 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK07473 carboxypeptidase; Provisional Back     alignment and domain information
>PRK06446 hypothetical protein; Provisional Back     alignment and domain information
>PRK08596 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK04443 acetyl-lysine deacetylase; Provisional Back     alignment and domain information
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>PRK08201 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01883 PepT-like peptidase T-like protein Back     alignment and domain information
>PRK09104 hypothetical protein; Validated Back     alignment and domain information
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07906 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03176 AllC allantoate amidohydrolase Back     alignment and domain information
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase Back     alignment and domain information
>PRK07907 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01886 dipeptidase dipeptidase PepV Back     alignment and domain information
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07079 hypothetical protein; Provisional Back     alignment and domain information
>PRK13381 peptidase T; Provisional Back     alignment and domain information
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 [] Back     alignment and domain information
>PRK07318 dipeptidase PepV; Reviewed Back     alignment and domain information
>PRK05469 peptidase T; Provisional Back     alignment and domain information
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>PRK07205 hypothetical protein; Provisional Back     alignment and domain information
>PRK15026 aminoacyl-histidine dipeptidase; Provisional Back     alignment and domain information
>TIGR01882 peptidase-T peptidase T Back     alignment and domain information
>TIGR01887 dipeptidaselike dipeptidase, putative Back     alignment and domain information
>PRK06156 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase Back     alignment and domain information
>PRK08554 peptidase; Reviewed Back     alignment and domain information
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] Back     alignment and domain information
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase Back     alignment and domain information
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR03107 glu_aminopep glutamyl aminopeptidase Back     alignment and domain information
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK09961 exoaminopeptidase; Provisional Back     alignment and domain information
>PRK09864 putative peptidase; Provisional Back     alignment and domain information
>PRK15026 aminoacyl-histidine dipeptidase; Provisional Back     alignment and domain information
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional Back     alignment and domain information
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
3pfo_A433 Putative acetylornithine deacetylase; metal bindin 5e-17
2rb7_A364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 2e-16
3tx8_A369 Succinyl-diaminopimelate desuccinylase; peptidase, 3e-15
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 8e-13
2f7v_A369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 1e-10
1cg2_A393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 6e-10
3isz_A377 Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b 1e-05
1vgy_A393 Succinyl-diaminopimelate desuccinylase; structural 4e-05
1lfw_A470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 1e-04
3rza_A396 Tripeptidase; phosphorylase/hydrolase-like, struct 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433 Back     alignment and structure
 Score = 77.4 bits (191), Expect = 5e-17
 Identities = 27/197 (13%), Positives = 49/197 (24%), Gaps = 29/197 (14%)

Query: 1   MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWID------ 54
           +  +        + V    +  EE    TG G  + +  G          Y  D      
Sbjct: 156 LDAIRTAGYAPDARVHVQTVTEEE---STGNGALSTLMRG----------YRADACLIPE 202

Query: 55  -TADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAM---EALKVIQTRFYKDFP 110
            T          G + ++L V G   H        + +  AM    A +           
Sbjct: 203 PTGH-TLTRAQVGAVWFRLRVRGTPVHVAYSETGTSAILSAMHLIRAFEEYTKELNAQAV 261

Query: 111 PHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169
             P       + P           GG   +     C +   + L       + M+ +++ 
Sbjct: 262 RDP--WFGQVKNPIKFNVGIIK--GGDWASSTAAWCELDCRLGLLTGDTPQEAMRGIEKC 317

Query: 170 VDDINENIEKLDTRGPV 186
           + D       L      
Sbjct: 318 LADAQATDSFLSENPAE 334
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Length = 364 Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Length = 369 Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356 Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Length = 369 Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393 Back     alignment and structure
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Length = 377 Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Length = 393 Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Length = 470 Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Length = 396 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query205
3io1_A445 Aminobenzoyl-glutamate utilization protein; peptid 99.93
3pfo_A433 Putative acetylornithine deacetylase; metal bindin 99.93
3ram_A394 HMRA protein; two-domain, catalytic (alpha-beta-al 99.93
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 99.93
1vgy_A393 Succinyl-diaminopimelate desuccinylase; structural 99.93
3tx8_A369 Succinyl-diaminopimelate desuccinylase; peptidase, 99.93
1xmb_A418 IAA-amino acid hydrolase homolog 2; structural gen 99.92
3isz_A377 Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b 99.92
2f7v_A369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 99.92
1ysj_A404 Protein YXEP; M20 family peptidase, dinuclear meta 99.91
1cg2_A393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 99.91
2rb7_A364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 99.91
3rza_A396 Tripeptidase; phosphorylase/hydrolase-like, struct 99.88
3dlj_A485 Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti 99.87
3n5f_A408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 99.87
3gb0_A373 Peptidase T; NP_980509.1, aminopeptidase PEPT, pep 99.87
3pfe_A472 Succinyl-diaminopimelate desuccinylase; metal bind 99.87
2pok_A481 Peptidase, M20/M25/M40 family; M20 family peptidas 99.86
3ife_A434 Peptidase T; metallopeptidase, aminopeptidase, hyd 99.85
2zog_A479 Cytosolic non-specific dipeptidase; metallopeptida 99.85
1z2l_A423 Allantoate amidohydrolase; ALLC, purine cataboli a 99.84
2v8h_A474 Beta-alanine synthase; amidohydrolase, alpha and b 99.84
3khx_A492 Putative dipeptidase sacol1801; DAPE, metallopepti 99.84
1fno_A417 Peptidase T; metallo peptidase, protease, hydrolas 99.81
2qyv_A 487 XAA-His dipeptidase; YP_718209.1, structural genom 99.77
1lfw_A470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 99.75
3mru_A 490 Aminoacyl-histidine dipeptidase; metalloprotease, 99.75
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 98.5
4h2k_A269 Succinyl-diaminopimelate desuccinylase; DAPE, MCSG 98.22
3t68_A268 Succinyl-diaminopimelate desuccinylase; DAPE, csgi 98.08
2fvg_A340 Endoglucanase; TM1049, structural genomics, joint 97.74
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 96.13
2wyr_A332 Cobalt-activated peptidase TET1; hydrolase, large 95.92
2gre_A349 Deblocking aminopeptidase; structural genomi prote 95.67
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 95.57
1vhe_A373 Aminopeptidase/glucanase homolog; structural genom 95.08
1y0y_A353 FRV operon protein FRVX; aminopeptidase, PDZ, hydr 94.57
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 93.23
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 92.41
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 92.03
3mru_A490 Aminoacyl-histidine dipeptidase; metalloprotease, 92.0
1ylo_A348 Hypothetical protein SF2450; structural genomics, 86.18
2afw_A329 Glutaminyl-peptide cyclotransferase; alpha-beta pr 85.86
3kl9_A355 PEPA, glutamyl aminopeptidase; tetrahedral aminope 85.62
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 84.9
4fuu_A309 Leucine aminopeptidase; phosphorylase/hydrolase li 83.13
1vho_A346 Endoglucanase; structural genomics, unknown functi 81.44
4f9u_A312 CG32412; alpha/beta hydrolase, PGlu formation, PE, 81.05
2vpu_A354 TET3, 354AA long hypothetical operon protein FRV; 80.53
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Back     alignment and structure
Probab=99.93  E-value=2.7e-26  Score=193.62  Aligned_cols=155  Identities=19%  Similarity=0.207  Sum_probs=131.0

Q ss_pred             hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC----CCceeeecc---cEEEEEEE
Q 028674            2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD----KQPCIGTGG---MIPWKLHV   74 (205)
Q Consensus         2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~----~~i~~~~~g---~~~~~i~~   74 (205)
                      ++|++.+.+++++|.|+|++|||. +   .|+++|+++|.+++  +|++|..|+++    +.+.++.+|   ..+++|++
T Consensus       163 ~~L~~~~~~~~g~v~l~f~p~EE~-~---~Ga~~~i~~g~~~~--~d~~~~~h~~~~~~~g~i~~~~~g~~a~~~~~i~v  236 (445)
T 3io1_A          163 HVLKQYAAQLNGVIKLIFQPAEEG-T---RGARAMVAAGVVDD--VDYFTAIHIGTGVPAGTVVCGGDNFMATTKFDVQF  236 (445)
T ss_dssp             HHHHHTGGGCCSEEEEEEESCTTT-T---CHHHHHHHTTTTTT--CSEEEEEEEEEEEETTBEESCCCCBCEEEEEEEEE
T ss_pred             HHHHhCcCcCCceEEEEEeccccc-c---chHHHHHHcCCccc--cceeEEEeccCCCCCCeEEEecCCeeEEEEEEEEE
Confidence            567777788999999999999995 4   59999999987765  68999998753    456555444   47999999


Q ss_pred             EeecCCc-cCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeec
Q 028674           75 TGKLFHS-GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL  153 (205)
Q Consensus        75 ~G~~~Ha-s~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~  153 (205)
                      +|+++|+ +.|+.|+|||..+++++..|+.+ .+...           +..+++++.++ +|+..|+||++|++.+|+|+
T Consensus       237 ~Gk~~HaGs~P~~g~nAi~~aa~~i~~l~~l-~~~~~-----------~~~~~~vg~i~-gG~~~NvIP~~a~~~~~iR~  303 (445)
T 3io1_A          237 SGVAAHAGGKPEDGRNALLAAAQAALGLHAI-PPHSA-----------GASRVNVGVMQ-AGTGRNVVPSSALLKVETRG  303 (445)
T ss_dssp             ECCCSSTTCCGGGCCCHHHHHHHHHHHHHTC-CCBTT-----------BCEEEEEEEEE-ECSCTTSCCCEEEEEEEEEE
T ss_pred             EeecCCCCCCCcCCcCHHHHHHHHHHHHHHH-HhhcC-----------CCeEEEEEEEe-cCCCCceeCCeEEEEEEEec
Confidence            9999998 79999999999999999999865 22222           24778999999 88999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 028674          154 TPFYNVTDVMKRLQEYVDDINE  175 (205)
Q Consensus       154 ~~~~~~~~i~~~i~~~i~~~~~  175 (205)
                      ++.++.+++.++|++.++.++.
T Consensus       304 ~~~~~~~~i~~~i~~~~~~~a~  325 (445)
T 3io1_A          304 ESEAINQYVFERAQHVVAGAAA  325 (445)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887654
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Back     alignment and structure
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Back     alignment and structure
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Back     alignment and structure
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Back     alignment and structure
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Back     alignment and structure
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Back     alignment and structure
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Back     alignment and structure
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Back     alignment and structure
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Back     alignment and structure
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Back     alignment and structure
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Back     alignment and structure
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Back     alignment and structure
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Back     alignment and structure
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Back     alignment and structure
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} Back     alignment and structure
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Back     alignment and structure
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Back     alignment and structure
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A Back     alignment and structure
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Back     alignment and structure
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Back     alignment and structure
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Back     alignment and structure
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Back     alignment and structure
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 205
d1lfwa2196 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactoba 3e-11
d1vgya2113 d.58.19.1 (A:181-293) Succinyl-diaminopimelate des 6e-11
d1cg2a2113 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudom 2e-08
d1ysja2115 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subti 2e-06
d1xmba2119 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mo 2e-05
d1z2la2117 d.58.19.1 (A:213-329) Allantoate amidohydrolase Al 3e-05
>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 196 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Aminopeptidase PepV
species: Lactobacillus delbrueckii [TaxId: 1584]

 Score = 57.6 bits (138), Expect = 3e-11
 Identities = 18/183 (9%), Positives = 42/183 (22%), Gaps = 21/183 (11%)

Query: 14  TVIAVFIASEENSAITGVGVDA-----LVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMI 68
           T+   F   +           A     +        + G  L  +  A +          
Sbjct: 5   TLEFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYESFLADKELDG 64

Query: 69  P-------WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
                     + + G+  H+  P    N        L             H   +V   +
Sbjct: 65  SFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHED 124

Query: 122 TPSTMKPTQWSYP--------GGGI-NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172
                                      +  G+ ++  +VR     +   ++K++ +    
Sbjct: 125 FYGKKLGIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG 184

Query: 173 INE 175
           I +
Sbjct: 185 ILD 187
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} Length = 113 Back     information, alignment and structure
>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 113 Back     information, alignment and structure
>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Length = 115 Back     information, alignment and structure
>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119 Back     information, alignment and structure
>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query205
d1vgya2113 Succinyl-diaminopimelate desuccinylase {Neisseria 99.85
d1ysja2115 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 99.84
d1xmba2119 IAA-amino acid hydrolase {Mouse-ear cress (Arabido 99.84
d1cg2a2113 Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 99.77
d1lfwa2196 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 99.73
d1z2la2117 Allantoate amidohydrolase AllC {Escherichia coli [ 99.7
d1r3na2116 Peptidase-like beta-alanine synthase {Yeast (Sacch 99.69
d1vgya1262 Succinyl-diaminopimelate desuccinylase, catalytic 98.96
d1ysja1261 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 98.4
g1q7l.1280 Aminoacylase-1, catalytic domain {Human (Homo sapi 98.38
d1xmba1273 IAA-amino acid hydrolase, catalytic domain {Mouse- 98.16
d1cg2a1276 Carboxypeptidase G2, catalytic domain {Pseudomonas 97.6
d1fnoa3113 Peptidase T (tripeptidase) {Salmonella typhimurium 97.45
d1lfwa1272 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 97.13
d2grea2233 Deblocking aminopeptidase YhfE {Bacillus cereus [T 95.36
d1rtqa_291 Aminopeptidase {Aeromonas proteolytica [TaxId: 671 95.07
d1tkja1277 Aminopeptidase {Streptomyces griseus [TaxId: 1911] 94.14
d1y0ya2255 Frv operon protein FrvX, catalytic domain {Pyrococ 90.4
d3bi1a3304 Glutamate carboxypeptidase II FOLH1 {Human (Homo s 89.58
d1fnoa4295 Peptidase T (tripeptidase), catalytic domain {Salm 88.15
d1de4c3294 Transferrin receptor ectodomain, protease-like dom 86.17
d1yloa2264 Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 85.91
d1vhoa2248 Putative endoglucanase TM1048, catalytic domain {T 85.01
d1vhea2275 Hypothetical protein YsdC, catalytic domain {Bacil 81.03
d2fvga2255 Endoglucanase TM1049 {Thermotoga maritima [TaxId: 80.76
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Succinyl-diaminopimelate desuccinylase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.85  E-value=2.6e-21  Score=131.90  Aligned_cols=104  Identities=25%  Similarity=0.379  Sum_probs=87.8

Q ss_pred             ccEEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCC-CcceeECCe
Q 028674           66 GMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPG-GGINQIPGE  144 (205)
Q Consensus        66 g~~~~~i~~~G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g-~~~nvip~~  144 (205)
                      |+.+++|+++|+++|+|+|+.|+|||..+++++.++.....+..        ..+..+.+++++.++ +| ...|+||++
T Consensus         1 Gsl~~~i~i~Gk~gHaa~P~~g~NpI~~~~~~i~~l~~~~~~~~--------~~~~~~~~~~~t~i~-~G~~~~NvIP~~   71 (113)
T d1vgya2           1 GSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEG--------NEYFPPTSFQISNIN-GGTGATNVIPGE   71 (113)
T ss_dssp             EEEEEEEEEECBCEETTCGGGCBCHHHHHHHHHHHHHHCCCCCC--------CSSCCCCEEEEEEEE-ECCSCTTEECSE
T ss_pred             CceEEEEEEEEEeecccCcccCCCcHHHHHHHHHHHHhhhcccC--------cccCCCcEEEEEEEE-ecccccccCCCc
Confidence            67889999999999999999999999999999999876532221        122346889999999 66 577999999


Q ss_pred             EEEEEEeecCCCCCHHHHHHHHHHHHHHHhhcch
Q 028674          145 CTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE  178 (205)
Q Consensus       145 ~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~  178 (205)
                      |++.+|+|+.+.++.+++.++|++.+++.+.+.+
T Consensus        72 a~~~~~iR~~~~~~~~~i~~~i~~i~~~~~~~~~  105 (113)
T d1vgya2          72 LNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYD  105 (113)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             eEEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence            9999999999999999999999999988765544
>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Back     information, alignment and structure
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure